Query 030134
Match_columns 182
No_of_seqs 205 out of 1367
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:03:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030134.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030134hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01486 K-box: K-box region; 99.9 5.5E-24 1.2E-28 156.5 9.9 87 26-112 14-100 (100)
2 KOG0014 MADS box transcription 97.5 1.7E-05 3.8E-10 63.7 -0.3 75 29-103 112-191 (195)
3 PF06005 DUF904: Protein of un 95.3 0.37 7.9E-06 33.5 9.4 52 58-114 1-52 (72)
4 COG3074 Uncharacterized protei 92.5 2.5 5.5E-05 29.4 9.0 53 58-115 1-53 (79)
5 PRK15422 septal ring assembly 91.6 3.3 7.2E-05 29.3 9.0 63 58-125 1-67 (79)
6 PF06698 DUF1192: Protein of u 88.8 0.79 1.7E-05 30.7 3.8 31 49-79 12-42 (59)
7 cd07429 Cby_like Chibby, a nuc 87.6 0.97 2.1E-05 33.9 4.1 26 87-112 72-97 (108)
8 PF08317 Spc7: Spc7 kinetochor 87.4 16 0.00035 31.9 12.3 87 32-123 185-273 (325)
9 PF06156 DUF972: Protein of un 84.2 9.4 0.0002 28.4 7.9 50 60-114 7-56 (107)
10 PRK13169 DNA replication intia 84.1 8.9 0.00019 28.7 7.8 49 60-113 7-55 (110)
11 smart00787 Spc7 Spc7 kinetocho 81.8 18 0.0004 31.7 10.1 87 33-124 181-269 (312)
12 PF01166 TSC22: TSC-22/dip/bun 81.1 4.1 8.8E-05 27.2 4.4 28 83-110 17-44 (59)
13 smart00030 CLb CLUSTERIN Beta 80.3 15 0.00032 30.5 8.3 75 53-127 7-92 (206)
14 COG2433 Uncharacterized conser 80.1 22 0.00047 34.2 10.4 85 29-115 420-509 (652)
15 smart00338 BRLZ basic region l 79.9 14 0.00029 24.5 6.8 41 72-116 15-55 (65)
16 PRK10884 SH3 domain-containing 75.6 45 0.00096 27.6 10.3 22 30-51 92-113 (206)
17 PF00170 bZIP_1: bZIP transcri 75.0 21 0.00045 23.5 7.0 39 73-115 16-54 (64)
18 PF07106 TBPIP: Tat binding pr 73.8 15 0.00032 28.9 6.6 52 29-81 114-165 (169)
19 PF01093 Clusterin: Clusterin; 73.8 22 0.00047 32.8 8.4 75 53-127 1-86 (436)
20 PRK10884 SH3 domain-containing 73.5 36 0.00078 28.1 9.0 10 35-44 90-99 (206)
21 PF07926 TPR_MLP1_2: TPR/MLP1/ 73.3 38 0.00081 25.7 10.6 51 62-112 74-130 (132)
22 PF07716 bZIP_2: Basic region 72.7 22 0.00047 22.7 6.8 39 72-114 14-52 (54)
23 KOG1962 B-cell receptor-associ 69.6 59 0.0013 27.2 9.4 52 60-111 157-210 (216)
24 TIGR02449 conserved hypothetic 69.2 33 0.00072 23.3 7.8 51 62-112 1-53 (65)
25 PF13758 Prefoldin_3: Prefoldi 69.0 10 0.00023 27.9 4.3 17 27-43 8-24 (99)
26 PF10504 DUF2452: Protein of u 68.0 30 0.00065 27.7 7.0 43 59-101 28-73 (159)
27 PF05529 Bap31: B-cell recepto 67.2 46 0.001 26.6 8.3 55 60-114 124-188 (192)
28 PF06156 DUF972: Protein of un 65.3 32 0.0007 25.5 6.4 37 81-117 16-52 (107)
29 PF14645 Chibby: Chibby family 64.7 11 0.00025 28.3 4.0 25 87-111 71-95 (116)
30 KOG4797 Transcriptional regula 63.2 38 0.00083 25.5 6.4 42 65-109 45-89 (123)
31 TIGR02338 gimC_beta prefoldin, 63.2 23 0.0005 26.0 5.3 45 66-111 61-105 (110)
32 PF06005 DUF904: Protein of un 59.5 55 0.0012 22.5 6.8 37 79-115 10-46 (72)
33 smart00340 HALZ homeobox assoc 58.7 27 0.00059 21.9 4.1 26 90-115 8-33 (44)
34 KOG4797 Transcriptional regula 57.7 20 0.00044 27.0 4.1 30 81-110 68-97 (123)
35 TIGR02894 DNA_bind_RsfA transc 57.2 1E+02 0.0022 24.8 12.0 60 55-114 77-138 (161)
36 PF15254 CCDC14: Coiled-coil d 55.9 1.1E+02 0.0024 30.5 9.7 82 27-113 390-481 (861)
37 KOG2751 Beclin-like protein [S 54.5 1.1E+02 0.0024 28.3 9.0 74 1-89 155-228 (447)
38 PRK00888 ftsB cell division pr 52.9 51 0.0011 24.2 5.6 35 81-115 28-62 (105)
39 KOG0963 Transcription factor/C 52.4 1.4E+02 0.003 28.9 9.6 86 30-115 120-210 (629)
40 PF14662 CCDC155: Coiled-coil 52.4 1.3E+02 0.0029 24.8 11.3 77 28-115 19-95 (193)
41 PRK11637 AmiB activator; Provi 50.9 1.9E+02 0.0041 26.1 11.7 43 60-102 74-118 (428)
42 KOG0804 Cytoplasmic Zn-finger 50.6 72 0.0016 29.7 7.2 50 60-109 360-411 (493)
43 PF04977 DivIC: Septum formati 50.3 63 0.0014 21.4 5.5 30 84-113 21-50 (80)
44 COG4467 Regulator of replicati 50.2 91 0.002 23.5 6.5 48 60-112 7-54 (114)
45 PRK13169 DNA replication intia 49.4 87 0.0019 23.4 6.4 36 81-116 16-51 (110)
46 PRK13729 conjugal transfer pil 49.2 67 0.0015 30.0 6.9 45 63-112 78-122 (475)
47 PF07888 CALCOCO1: Calcium bin 48.8 2.5E+02 0.0054 26.8 10.7 26 86-111 212-237 (546)
48 PF04849 HAP1_N: HAP1 N-termin 47.2 36 0.00078 30.0 4.7 54 61-114 97-187 (306)
49 PF03980 Nnf1: Nnf1 ; InterPr 47.2 75 0.0016 23.0 5.8 38 77-114 70-107 (109)
50 KOG0709 CREB/ATF family transc 45.5 24 0.00051 32.8 3.4 23 57-79 233-255 (472)
51 KOG3119 Basic region leucine z 44.9 83 0.0018 26.9 6.5 43 72-118 204-246 (269)
52 PHA02109 hypothetical protein 44.0 90 0.002 25.6 6.1 48 41-100 171-220 (233)
53 PF04899 MbeD_MobD: MbeD/MobD 43.5 1.1E+02 0.0023 21.1 8.5 50 65-114 3-55 (70)
54 PF10211 Ax_dynein_light: Axon 42.7 1.4E+02 0.0031 24.1 7.3 9 3-11 95-103 (189)
55 PF02151 UVR: UvrB/uvrC motif; 42.3 70 0.0015 18.7 4.1 33 62-94 3-35 (36)
56 PF04880 NUDE_C: NUDE protein, 41.4 65 0.0014 25.9 5.0 42 63-113 2-43 (166)
57 PF09789 DUF2353: Uncharacteri 41.1 2.5E+02 0.0054 24.9 9.0 76 33-113 32-112 (319)
58 PF10018 Med4: Vitamin-D-recep 40.9 1.9E+02 0.0041 23.2 9.2 56 60-117 4-59 (188)
59 PLN02320 seryl-tRNA synthetase 40.9 3.2E+02 0.0069 25.8 10.7 78 32-114 68-150 (502)
60 TIGR02209 ftsL_broad cell divi 38.9 1.1E+02 0.0024 20.7 5.4 33 82-114 26-58 (85)
61 PRK11637 AmiB activator; Provi 38.4 3E+02 0.0065 24.8 12.1 78 29-115 45-124 (428)
62 PF12329 TMF_DNA_bd: TATA elem 38.3 1.3E+02 0.0028 20.6 6.1 30 84-113 30-59 (74)
63 PF13870 DUF4201: Domain of un 38.2 2E+02 0.0042 22.6 12.0 83 30-115 12-105 (177)
64 PF15243 ANAPC15: Anaphase-pro 37.3 42 0.0009 24.4 3.0 23 61-83 28-50 (92)
65 PF09798 LCD1: DNA damage chec 36.3 2.3E+02 0.005 27.7 8.6 53 62-114 5-60 (654)
66 PF04508 Pox_A_type_inc: Viral 36.0 50 0.0011 18.0 2.4 16 32-47 2-17 (23)
67 PRK09413 IS2 repressor TnpA; R 35.9 1.8E+02 0.0039 21.4 7.0 28 84-111 75-102 (121)
68 PRK15422 septal ring assembly 35.4 1.6E+02 0.0035 20.8 5.7 34 80-113 11-44 (79)
69 COG4467 Regulator of replicati 35.0 1.1E+02 0.0024 23.0 5.0 33 85-117 20-52 (114)
70 cd00632 Prefoldin_beta Prefold 35.0 1.7E+02 0.0037 21.0 7.2 47 66-113 57-103 (105)
71 PF12537 DUF3735: Protein of u 34.7 71 0.0015 21.7 3.7 25 60-84 47-71 (72)
72 PF06721 DUF1204: Protein of u 34.6 2.5E+02 0.0054 23.3 7.4 79 31-110 15-100 (228)
73 PRK09039 hypothetical protein; 33.7 3.4E+02 0.0073 24.0 9.3 48 30-98 136-183 (343)
74 KOG0971 Microtubule-associated 33.5 5.6E+02 0.012 26.5 12.4 86 27-113 328-429 (1243)
75 PF04999 FtsL: Cell division p 32.9 1.4E+02 0.003 21.0 5.2 33 82-114 37-69 (97)
76 PF11365 DUF3166: Protein of u 32.3 1.3E+02 0.0028 22.0 4.9 31 83-113 11-41 (96)
77 KOG0930 Guanine nucleotide exc 31.4 97 0.0021 27.4 4.8 41 56-105 9-49 (395)
78 KOG0946 ER-Golgi vesicle-tethe 31.2 5.7E+02 0.012 25.9 12.3 83 27-114 614-698 (970)
79 PF15619 Lebercilin: Ciliary p 31.0 2.9E+02 0.0064 22.5 8.3 25 90-114 167-191 (194)
80 PF08946 Osmo_CC: Osmosensory 30.0 1.2E+02 0.0025 19.3 3.7 24 81-104 20-43 (46)
81 COG2433 Uncharacterized conser 29.2 2.8E+02 0.006 27.0 7.7 15 33-47 354-368 (652)
82 KOG0837 Transcriptional activa 29.1 3.3E+02 0.0071 23.7 7.5 53 59-115 200-255 (279)
83 PF01763 Herpes_UL6: Herpesvir 28.5 2.2E+02 0.0049 27.2 7.0 48 71-118 353-401 (557)
84 PF07798 DUF1640: Protein of u 28.2 3E+02 0.0065 21.7 8.3 53 58-110 44-96 (177)
85 COG4026 Uncharacterized protei 27.7 3.9E+02 0.0085 22.9 9.5 59 51-112 96-160 (290)
86 PF04111 APG6: Autophagy prote 27.2 4.2E+02 0.0092 23.1 11.2 68 31-112 43-110 (314)
87 smart00338 BRLZ basic region l 27.0 1.8E+02 0.004 18.8 5.2 28 83-110 36-63 (65)
88 PF10226 DUF2216: Uncharacteri 26.7 2.8E+02 0.0062 22.9 6.5 30 80-109 48-77 (195)
89 TIGR02449 conserved hypothetic 26.3 2.1E+02 0.0046 19.4 5.9 31 84-114 4-34 (65)
90 COG0216 PrfA Protein chain rel 26.2 4.9E+02 0.011 23.5 9.7 89 2-106 10-102 (363)
91 PF07558 Shugoshin_N: Shugoshi 25.6 97 0.0021 19.4 2.9 32 80-111 14-45 (46)
92 PRK14127 cell division protein 25.2 2.4E+02 0.0051 21.1 5.4 28 88-115 38-65 (109)
93 TIGR00012 L29 ribosomal protei 24.9 1.3E+02 0.0028 19.3 3.5 27 54-80 1-27 (55)
94 TIGR01950 SoxR redox-sensitive 24.7 2.7E+02 0.0059 21.3 5.9 54 57-110 57-110 (142)
95 PF06937 EURL: EURL protein; 24.7 97 0.0021 27.0 3.6 36 42-77 203-238 (285)
96 PRK13923 putative spore coat p 24.6 3.3E+02 0.0071 22.0 6.4 27 86-112 110-136 (170)
97 PLN02372 violaxanthin de-epoxi 24.6 5.3E+02 0.011 24.0 8.4 43 33-87 363-405 (455)
98 KOG3759 Uncharacterized RUN do 24.0 6.3E+02 0.014 24.0 9.2 29 54-85 198-229 (621)
99 PF11629 Mst1_SARAH: C termina 23.9 1.2E+02 0.0026 19.5 3.0 12 55-66 5-16 (49)
100 PF10186 Atg14: UV radiation r 23.6 4.2E+02 0.0092 21.8 9.8 23 30-52 26-48 (302)
101 PF15397 DUF4618: Domain of un 23.5 4.8E+02 0.01 22.5 9.7 83 32-115 121-221 (258)
102 cd04769 HTH_MerR2 Helix-Turn-H 23.5 2.9E+02 0.0064 20.0 6.3 54 57-110 56-109 (116)
103 cd01109 HTH_YyaN Helix-Turn-He 23.2 2.9E+02 0.0063 19.9 6.8 53 57-110 57-109 (113)
104 PF07889 DUF1664: Protein of u 22.9 3.5E+02 0.0076 20.7 8.3 45 67-112 49-93 (126)
105 PF08781 DP: Transcription fac 22.8 3.8E+02 0.0082 21.0 7.7 44 61-106 1-44 (142)
106 PF10473 CENP-F_leu_zip: Leuci 22.7 3.7E+02 0.0081 20.9 10.6 39 74-113 75-113 (140)
107 cd07597 BAR_SNX8 The Bin/Amphi 22.6 4.6E+02 0.0099 21.9 7.4 47 31-79 145-191 (246)
108 PF12718 Tropomyosin_1: Tropom 22.4 3.7E+02 0.0079 20.7 8.1 16 80-95 80-95 (143)
109 KOG2417 Predicted G-protein co 22.3 6.2E+02 0.013 23.3 9.0 32 58-89 183-214 (462)
110 COG5415 Predicted integral mem 21.9 1.5E+02 0.0032 25.1 4.0 25 61-85 15-42 (251)
111 PF03670 UPF0184: Uncharacteri 21.6 3.1E+02 0.0067 19.6 7.6 52 53-112 18-72 (83)
112 cd04787 HTH_HMRTR_unk Helix-Tu 21.3 3.6E+02 0.0077 20.1 6.8 53 57-110 57-109 (133)
113 PF07407 Seadorna_VP6: Seadorn 20.9 2.8E+02 0.0061 25.0 5.8 45 54-112 25-69 (420)
114 TIGR03752 conj_TIGR03752 integ 20.6 5.8E+02 0.012 24.0 8.0 74 32-111 67-140 (472)
115 PHA01750 hypothetical protein 20.3 3E+02 0.0065 18.9 6.7 21 88-108 50-70 (75)
116 PF11853 DUF3373: Protein of u 20.1 89 0.0019 29.4 2.7 30 86-115 30-59 (489)
No 1
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.91 E-value=5.5e-24 Score=156.54 Aligned_cols=87 Identities=49% Similarity=0.741 Sum_probs=84.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 030134 26 NGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNL 105 (182)
Q Consensus 26 ~~~~~~E~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~ 105 (182)
.+.|..|+.+|+.+++.|+..+|||+||||++||++||++||++|+.||++||+||+++|+++|..|++|++.|.++|..
T Consensus 14 ~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~ 93 (100)
T PF01486_consen 14 HEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQ 93 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 030134 106 LAKKVKE 112 (182)
Q Consensus 106 L~~kl~e 112 (182)
|+.++.|
T Consensus 94 L~~~~~e 100 (100)
T PF01486_consen 94 LRQKIEE 100 (100)
T ss_pred HHHHhcC
Confidence 9999864
No 2
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=97.53 E-value=1.7e-05 Score=63.67 Aligned_cols=75 Identities=39% Similarity=0.389 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHHHH---hcccCCCCCCCCCH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHhHHHHHHHH
Q 030134 29 WTLEYSKLKARMEVLQRN---QKHFMGEDLADLSL-KELQSVEQQIDSGLKLIRSRKNQLMLQSIS-ELQKKDKLLKEQN 103 (182)
Q Consensus 29 ~~~E~~~Lk~~ie~Lq~~---~R~l~GEdL~~Ls~-kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~-~LqkKe~~L~eeN 103 (182)
+..+...++...+.|+.. +|+++|++|.++++ .+|..+|.+|+.++..+|+.+...+.+++. .++.++..+...|
T Consensus 112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (195)
T KOG0014|consen 112 KKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNFQVLQEKEKSLEAEN 191 (195)
T ss_pred hhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhhhhhcccchhccccC
Confidence 455666777777877754 99999999999999 999999999999999999999999998887 6666665554443
No 3
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.26 E-value=0.37 Score=33.50 Aligned_cols=52 Identities=27% Similarity=0.400 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 58 LSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 58 Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
+|++-|.+||..+..|+..|.. +..++.+|+.+-..|.++|..|+.......
T Consensus 1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5788999999999999998865 445677888887777788887777665544
No 4
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.47 E-value=2.5 Score=29.36 Aligned_cols=53 Identities=21% Similarity=0.376 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030134 58 LSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEK 115 (182)
Q Consensus 58 Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~ 115 (182)
+|++=|.+||..+..|+.-| .|+.-+|++|+.|...|..+-..++........
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ 53 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREALER 53 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 57888999999999999876 577778888888888777777766666555443
No 5
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=91.62 E-value=3.3 Score=29.30 Aligned_cols=63 Identities=22% Similarity=0.395 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HH-HHHHHHhHHhhhhh
Q 030134 58 LSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKK---VK-EKEKLLSQEAQCRE 125 (182)
Q Consensus 58 Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k---l~-e~~~~~~~~~~w~~ 125 (182)
+|++=|.+||..+..|+.-| .++.-+|++|+.|-..|.+++..++.- |. ++......+..|+.
T Consensus 1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wqe 67 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 67 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999877 455567788887777777776664333 21 12223334556764
No 6
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=88.79 E-value=0.79 Score=30.70 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=23.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHhHHHHH
Q 030134 49 HFMGEDLADLSLKELQSVEQQIDSGLKLIRS 79 (182)
Q Consensus 49 ~l~GEdL~~Ls~kEL~~LE~qLe~sL~~IRs 79 (182)
+..|+||+.||+.||..==..|+.=+.++|+
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEA 42 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999998755555555555543
No 7
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=87.63 E-value=0.97 Score=33.85 Aligned_cols=26 Identities=38% Similarity=0.594 Sum_probs=21.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 030134 87 QSISELQKKDKLLKEQNNLLAKKVKE 112 (182)
Q Consensus 87 ~qi~~LqkKe~~L~eeN~~L~~kl~e 112 (182)
.++..|++|.+.|+|||+.|+-|++-
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKiev 97 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEV 97 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999999854
No 8
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.36 E-value=16 Score=31.94 Aligned_cols=87 Identities=23% Similarity=0.340 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHH
Q 030134 32 EYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLM--LQSISELQKKDKLLKEQNNLLAKK 109 (182)
Q Consensus 32 E~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm--~~qi~~LqkKe~~L~eeN~~L~~k 109 (182)
.+..|+.++..|+... .+++.++..+|..|-..|...=..|..+|..+- ..++..++.+...+.++-..+...
T Consensus 185 ~~~~L~~e~~~Lk~~~-----~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~e 259 (325)
T PF08317_consen 185 RKAELEEELENLKQLV-----EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAE 259 (325)
T ss_pred HHHHHHHHHHHHHHHH-----hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555444433 338889999999999999998888888887754 577788888888888888888888
Q ss_pred HHHHHHHHhHHhhh
Q 030134 110 VKEKEKLLSQEAQC 123 (182)
Q Consensus 110 l~e~~~~~~~~~~w 123 (182)
|.+.++.......|
T Consensus 260 I~e~~~~~~~~r~~ 273 (325)
T PF08317_consen 260 IAEAEKIREECRGW 273 (325)
T ss_pred HHHHHHHHHHhcCC
Confidence 88776554433334
No 9
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=84.21 E-value=9.4 Score=28.41 Aligned_cols=50 Identities=30% Similarity=0.427 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 60 LKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 60 ~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
++.|.+||++|..-+..|..-|.++ .+|-..-..|.-||..|+..|.+..
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~-----~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQL-----QELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788888877776666655433 3444444556666666666665543
No 10
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=84.09 E-value=8.9 Score=28.74 Aligned_cols=49 Identities=29% Similarity=0.422 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 030134 60 LKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEK 113 (182)
Q Consensus 60 ~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~ 113 (182)
++-|.+||+|+..-+..|..-|.++ .+|-..-..|.-||.-|+..+.+.
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~-----~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQL-----AELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568889999988888777766543 345555666777777777777764
No 11
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=81.78 E-value=18 Score=31.72 Aligned_cols=87 Identities=22% Similarity=0.280 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHH
Q 030134 33 YSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLM--LQSISELQKKDKLLKEQNNLLAKKV 110 (182)
Q Consensus 33 ~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm--~~qi~~LqkKe~~L~eeN~~L~~kl 110 (182)
+..|+.++..|+... ++++.++..||..+-..|..-...|..++.++. .+++..+..+.....+.-..+...|
T Consensus 181 ~~~L~~e~~~L~~~~-----~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 181 KDALEEELRQLKQLE-----DELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHhH-----HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444332 678889999999999999999988888777754 5777777777777777777777777
Q ss_pred HHHHHHHhHHhhhh
Q 030134 111 KEKEKLLSQEAQCR 124 (182)
Q Consensus 111 ~e~~~~~~~~~~w~ 124 (182)
.+.++.......|.
T Consensus 256 ~~ae~~~~~~r~~t 269 (312)
T smart00787 256 AEAEKKLEQCRGFT 269 (312)
T ss_pred HHHHHHHHhcCCCC
Confidence 77666544433443
No 12
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=81.13 E-value=4.1 Score=27.24 Aligned_cols=28 Identities=32% Similarity=0.634 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 030134 83 QLMLQSISELQKKDKLLKEQNNLLAKKV 110 (182)
Q Consensus 83 qlm~~qi~~LqkKe~~L~eeN~~L~~kl 110 (182)
+.+.++|.+|..+...|..||..|+...
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556677777777777777777766543
No 13
>smart00030 CLb CLUSTERIN Beta chain.
Probab=80.35 E-value=15 Score=30.51 Aligned_cols=75 Identities=20% Similarity=0.265 Sum_probs=48.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHHHHHH---------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHhHHh
Q 030134 53 EDLADLSLKELQSVEQQIDSGLKLIRSRKN---------QLMLQSISELQKKDKLLKEQNNLLAKKVKEKEK--LLSQEA 121 (182)
Q Consensus 53 EdL~~Ls~kEL~~LE~qLe~sL~~IRsrK~---------qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~--~~~~~~ 121 (182)
++|..||..-=.-+.+++++||+-|..-|+ +-|+..+++.+++-......-+....||.|.+. .....+
T Consensus 7 ~~Lk~lS~~G~kyvd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~vCnetm~a 86 (206)
T smart00030 7 NELQEMSTQGSKYINKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVCNETMMA 86 (206)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666788999999998876554 445666666665544444444456777777554 344667
Q ss_pred hhhhhh
Q 030134 122 QCREQQ 127 (182)
Q Consensus 122 ~w~~~~ 127 (182)
.|+.|-
T Consensus 87 lWeECK 92 (206)
T smart00030 87 LWEECK 92 (206)
T ss_pred HHHHhH
Confidence 899764
No 14
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.13 E-value=22 Score=34.24 Aligned_cols=85 Identities=21% Similarity=0.299 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHhHHHHHHHH
Q 030134 29 WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIR-----SRKNQLMLQSISELQKKDKLLKEQN 103 (182)
Q Consensus 29 ~~~E~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~~LE~qLe~sL~~IR-----srK~qlm~~qi~~LqkKe~~L~eeN 103 (182)
...++.++...++.|+...++|..+- +.|- +++..||.+|+..-++++ .|+-+.+...|..|+++...-...-
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~-ee~k-~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~v 497 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKREL-EELK-REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRV 497 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666665555544321 1111 788999999998888877 4566678888888888877777777
Q ss_pred HHHHHHHHHHHH
Q 030134 104 NLLAKKVKEKEK 115 (182)
Q Consensus 104 ~~L~~kl~e~~~ 115 (182)
..|..++.+..+
T Consensus 498 e~L~~~l~~l~k 509 (652)
T COG2433 498 EELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHH
Confidence 778888877654
No 15
>smart00338 BRLZ basic region leucin zipper.
Probab=79.94 E-value=14 Score=24.46 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=32.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 030134 72 SGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKL 116 (182)
Q Consensus 72 ~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~~ 116 (182)
.|-.+-|.||.+.+ ..|..+...|..+|..|..++......
T Consensus 15 ~aA~~~R~rKk~~~----~~Le~~~~~L~~en~~L~~~~~~l~~e 55 (65)
T smart00338 15 EAARRSRERKKAEI----EELERKVEQLEAENERLKKEIERLRRE 55 (65)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788887655 788999999999999999998776543
No 16
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.65 E-value=45 Score=27.58 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccC
Q 030134 30 TLEYSKLKARMEVLQRNQKHFM 51 (182)
Q Consensus 30 ~~E~~~Lk~~ie~Lq~~~R~l~ 51 (182)
...+..|.++++.|+..+.++.
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666665555433
No 17
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=74.99 E-value=21 Score=23.49 Aligned_cols=39 Identities=31% Similarity=0.430 Sum_probs=28.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030134 73 GLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEK 115 (182)
Q Consensus 73 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~ 115 (182)
|-.+.|.||.+.| ..|..+...|..+|..|...+.....
T Consensus 16 AAr~~R~RKk~~~----~~Le~~~~~L~~en~~L~~~~~~L~~ 54 (64)
T PF00170_consen 16 AARRSRQRKKQYI----EELEEKVEELESENEELKKELEQLKK 54 (64)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788887665 67778888888888888877766543
No 18
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.82 E-value=15 Score=28.90 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHH
Q 030134 29 WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRK 81 (182)
Q Consensus 29 ~~~E~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~~LE~qLe~sL~~IRsrK 81 (182)
....+..|+.+++.|+..+..|.+ +-...+.+|...++.......+..|.||
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555 3344556666666666666666555555
No 19
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=73.75 E-value=22 Score=32.83 Aligned_cols=75 Identities=20% Similarity=0.276 Sum_probs=49.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHHHH---------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHhHHh
Q 030134 53 EDLADLSLKELQSVEQQIDSGLKLIRSR---------KNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEK--LLSQEA 121 (182)
Q Consensus 53 EdL~~Ls~kEL~~LE~qLe~sL~~IRsr---------K~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~--~~~~~~ 121 (182)
++|..||..--.-+..++++||.-|..- +.+-|+..+++.++|-+.....-+....+|+|.+. ......
T Consensus 1 ~~Lk~lS~~GekyvdeEik~Al~GvKqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~Cn~sm~~ 80 (436)
T PF01093_consen 1 ENLKELSEQGEKYVDEEIKNALNGVKQMKTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEVCNESMMA 80 (436)
T ss_pred CchHHHhHhCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666677888999998877644 34566677777766555555555566778877654 334567
Q ss_pred hhhhhh
Q 030134 122 QCREQQ 127 (182)
Q Consensus 122 ~w~~~~ 127 (182)
.|+-|-
T Consensus 81 lWeECk 86 (436)
T PF01093_consen 81 LWEECK 86 (436)
T ss_pred HHHHHH
Confidence 898663
No 20
>PRK10884 SH3 domain-containing protein; Provisional
Probab=73.52 E-value=36 Score=28.14 Aligned_cols=10 Identities=30% Similarity=0.534 Sum_probs=5.4
Q ss_pred HHHHHHHHHH
Q 030134 35 KLKARMEVLQ 44 (182)
Q Consensus 35 ~Lk~~ie~Lq 44 (182)
.++.++..|+
T Consensus 90 ~~~~rlp~le 99 (206)
T PRK10884 90 SLRTRVPDLE 99 (206)
T ss_pred cHHHHHHHHH
Confidence 3455555555
No 21
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=73.31 E-value=38 Score=25.66 Aligned_cols=51 Identities=22% Similarity=0.381 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 030134 62 ELQSVEQQIDSGLKLIRSRK------NQLMLQSISELQKKDKLLKEQNNLLAKKVKE 112 (182)
Q Consensus 62 EL~~LE~qLe~sL~~IRsrK------~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e 112 (182)
++..|...++.+-..+...+ -..+..+|.+++++...|..+|+.|..+|..
T Consensus 74 ~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 74 EINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555444444332 2356788999999999999999999988854
No 22
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=72.73 E-value=22 Score=22.70 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=29.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 72 SGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 72 ~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
.|..+-|.||-+.+ .+|..+...|..+|..|..++....
T Consensus 14 ~AA~r~R~rkk~~~----~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 14 EAARRSRQRKKQRE----EELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666777776554 6788888889999999988887654
No 23
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=69.62 E-value=59 Score=27.23 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 030134 60 LKELQSVEQQIDSGLKLIRS--RKNQLMLQSISELQKKDKLLKEQNNLLAKKVK 111 (182)
Q Consensus 60 ~kEL~~LE~qLe~sL~~IRs--rK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~ 111 (182)
..|+..||..++.--+..-. .|..-|..+.+++++.-..|.|+|..|+.++.
T Consensus 157 ~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 157 KADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 45677777776665544433 33345567777777777788888888888774
No 24
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=69.19 E-value=33 Score=23.34 Aligned_cols=51 Identities=25% Similarity=0.340 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 030134 62 ELQSVEQQIDSGLKLIRSRK--NQLMLQSISELQKKDKLLKEQNNLLAKKVKE 112 (182)
Q Consensus 62 EL~~LE~qLe~sL~~IRsrK--~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e 112 (182)
||+.||.+++.=|.....=| +.++.+++..++..-..|.+.|..=+.+|+.
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEa 53 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEA 53 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888776654332 3355555555555555555555555555544
No 25
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=69.02 E-value=10 Score=27.93 Aligned_cols=17 Identities=41% Similarity=0.798 Sum_probs=15.1
Q ss_pred cchHHHHHHHHHHHHHH
Q 030134 27 GNWTLEYSKLKARMEVL 43 (182)
Q Consensus 27 ~~~~~E~~~Lk~~ie~L 43 (182)
+-|..||.-||.+|+.|
T Consensus 8 q~w~aEYe~LKEEi~~l 24 (99)
T PF13758_consen 8 QTWEAEYEGLKEEIEAL 24 (99)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 46999999999999887
No 26
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=68.04 E-value=30 Score=27.66 Aligned_cols=43 Identities=23% Similarity=0.293 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHhHHHHHH
Q 030134 59 SLKELQSVEQQIDSGLKLIRSR---KNQLMLQSISELQKKDKLLKE 101 (182)
Q Consensus 59 s~kEL~~LE~qLe~sL~~IRsr---K~qlm~~qi~~LqkKe~~L~e 101 (182)
+..||..|=++++.|..-||.+ |-.++.+||..|+..-+.+.+
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile 73 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILE 73 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999965 667778888887776554443
No 27
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=67.23 E-value=46 Score=26.57 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHH----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 60 LKELQSVEQQIDSGLKLIRSR----------KNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 60 ~kEL~~LE~qLe~sL~~IRsr----------K~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
+.+|..+|..++.+-++..+. +..-..++|++|+++......+...|+++.+...
T Consensus 124 i~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 124 IKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778887777777766433 3344566777777766666666666666665543
No 28
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=65.31 E-value=32 Score=25.53 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 030134 81 KNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLL 117 (182)
Q Consensus 81 K~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~~~ 117 (182)
....|.++|..|++....|.|+|..|+..-.......
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999887665443
No 29
>PF14645 Chibby: Chibby family
Probab=64.67 E-value=11 Score=28.32 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=18.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q 030134 87 QSISELQKKDKLLKEQNNLLAKKVK 111 (182)
Q Consensus 87 ~qi~~LqkKe~~L~eeN~~L~~kl~ 111 (182)
.....++++.+.|.|||+.|+.|++
T Consensus 71 ~~~~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 71 EENQRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667778888999999888874
No 30
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=63.24 E-value=38 Score=25.52 Aligned_cols=42 Identities=24% Similarity=0.534 Sum_probs=26.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHH
Q 030134 65 SVEQQIDSGLKLIRSRKNQLM---LQSISELQKKDKLLKEQNNLLAKK 109 (182)
Q Consensus 65 ~LE~qLe~sL~~IRsrK~qlm---~~qi~~LqkKe~~L~eeN~~L~~k 109 (182)
.+.+.+|.|+.-| |++|| .++++-|+.+.+.|.+.|+.|+..
T Consensus 45 aIDNKIeQAMDLV---KtHLmfAVREEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 45 AIDNKIEQAMDLV---KTHLMFAVREEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred eechHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666 45555 366666777666666666666554
No 31
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=63.22 E-value=23 Score=25.98 Aligned_cols=45 Identities=22% Similarity=0.421 Sum_probs=26.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 030134 66 VEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVK 111 (182)
Q Consensus 66 LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~ 111 (182)
+++..+.++..|..|+..+ ...|..|.++...|.+.-..++.+|.
T Consensus 61 v~~~~~e~~~~l~~r~e~i-e~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETL-ELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred heecHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666665433 56666666666655555555555443
No 32
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=59.53 E-value=55 Score=22.54 Aligned_cols=37 Identities=32% Similarity=0.378 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030134 79 SRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEK 115 (182)
Q Consensus 79 srK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~ 115 (182)
..|.+-..+.|..|+.+...|.++|..|.....+...
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~ 46 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELKEENEELKE 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3577888899999999999999999999977655443
No 33
>smart00340 HALZ homeobox associated leucin zipper.
Probab=58.72 E-value=27 Score=21.88 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=21.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030134 90 SELQKKDKLLKEQNNLLAKKVKEKEK 115 (182)
Q Consensus 90 ~~LqkKe~~L~eeN~~L~~kl~e~~~ 115 (182)
+.|++=-..|.++|+.|++.+.+...
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677778899999999999988753
No 34
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=57.74 E-value=20 Score=26.96 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 030134 81 KNQLMLQSISELQKKDKLLKEQNNLLAKKV 110 (182)
Q Consensus 81 K~qlm~~qi~~LqkKe~~L~eeN~~L~~kl 110 (182)
-.+.+.++|.+|-.+...|..||..|+.-+
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 467889999999999999999999998654
No 35
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=57.20 E-value=1e+02 Score=24.76 Aligned_cols=60 Identities=18% Similarity=0.266 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 55 LADLSLKELQSVEQQIDSGLKLIRS--RKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 55 L~~Ls~kEL~~LE~qLe~sL~~IRs--rK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
.++|++++....=++|......... .-++-+.+++..|+.+...|..+|..|.+++....
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4779999988877777765333332 22445667888888888888888888888776544
No 36
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=55.86 E-value=1.1e+02 Score=30.50 Aligned_cols=82 Identities=29% Similarity=0.340 Sum_probs=43.5
Q ss_pred cchHHHHHHHHHHHHHHHHHhccc-CCC-CC--C--CCCHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhH
Q 030134 27 GNWTLEYSKLKARMEVLQRNQKHF-MGE-DL--A--DLSLKELQS----VEQQIDSGLKLIRSRKNQLMLQSISELQKKD 96 (182)
Q Consensus 27 ~~~~~E~~~Lk~~ie~Lq~~~R~l-~GE-dL--~--~Ls~kEL~~----LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe 96 (182)
+-++.|.+-|+.++..|...+|-- ..+ .- . +|-+--|+. |+.||..+++.. +++...-++|-|-.
T Consensus 390 QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~-----e~lq~kneellk~~ 464 (861)
T PF15254_consen 390 QPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQ-----ELLQSKNEELLKVI 464 (861)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhH-----HHHHHhHHHHHHHH
Confidence 345667777777776666555541 111 11 1 233445554 566666665542 23333444555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030134 97 KLLKEQNNLLAKKVKEK 113 (182)
Q Consensus 97 ~~L~eeN~~L~~kl~e~ 113 (182)
..+.+||+.|.+.+.+.
T Consensus 465 e~q~~Enk~~~~~~~ek 481 (861)
T PF15254_consen 465 ENQKEENKRLRKMFQEK 481 (861)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56667777777666554
No 37
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=54.49 E-value=1.1e+02 Score=28.29 Aligned_cols=74 Identities=18% Similarity=0.259 Sum_probs=44.1
Q ss_pred ChHHHHHHhhhhhhhhhhccCCCCCccchHHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhHHHHHH
Q 030134 1 MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSR 80 (182)
Q Consensus 1 M~~iLeRY~~~s~~~~~~~~~~~e~~~~~~~E~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~~LE~qLe~sL~~IRsr 80 (182)
|.++.+.|++|-......+ .+ .++..+..+.+.+....+++.- -+++|..=|.+|+..|...+++
T Consensus 155 ~~~e~~~Y~~~l~~Le~~~---~~------~~~~~~~~e~~~l~~eE~~L~q------~lk~le~~~~~l~~~l~e~~~~ 219 (447)
T KOG2751|consen 155 AEDEVDTYKACLQRLEQQN---QD------VSEEDLLKELKNLKEEEERLLQ------QLEELEKEEAELDHQLKELEFK 219 (447)
T ss_pred HHHHHHHHHHHHHHHhhcC---cc------cchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888764432211 11 1344455555555555444432 1456666678888899999999
Q ss_pred HHHHHHHHH
Q 030134 81 KNQLMLQSI 89 (182)
Q Consensus 81 K~qlm~~qi 89 (182)
|.++..++-
T Consensus 220 ~~~~~e~~~ 228 (447)
T KOG2751|consen 220 AERLNEEED 228 (447)
T ss_pred HHHHHHHHH
Confidence 987765443
No 38
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=52.89 E-value=51 Score=24.24 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030134 81 KNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEK 115 (182)
Q Consensus 81 K~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~ 115 (182)
+..-+..++..++++...+..+|..|+.++.....
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34456677788888888889999999998877643
No 39
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=52.45 E-value=1.4e+02 Score=28.93 Aligned_cols=86 Identities=20% Similarity=0.246 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCHH-HHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 030134 30 TLEYSKLKARMEVLQRNQKHFMGEDLADLSLK-ELQSVEQQIDSGLKL----IRSRKNQLMLQSISELQKKDKLLKEQNN 104 (182)
Q Consensus 30 ~~E~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~k-EL~~LE~qLe~sL~~----IRsrK~qlm~~qi~~LqkKe~~L~eeN~ 104 (182)
..|..+|+.+++.+....-.+.+-++.-..++ .|..+|..++...+. +-....+-..+....|+..+..+.+.|.
T Consensus 120 ~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~ 199 (629)
T KOG0963|consen 120 SEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLE 199 (629)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888887777776655543 567777777776663 3444444555666667777777777777
Q ss_pred HHHHHHHHHHH
Q 030134 105 LLAKKVKEKEK 115 (182)
Q Consensus 105 ~L~~kl~e~~~ 115 (182)
.+.+++..++.
T Consensus 200 ~le~ki~~lq~ 210 (629)
T KOG0963|consen 200 ELEKKISSLQS 210 (629)
T ss_pred HHHHHHHHHHH
Confidence 77777766543
No 40
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=52.43 E-value=1.3e+02 Score=24.76 Aligned_cols=77 Identities=22% Similarity=0.315 Sum_probs=47.2
Q ss_pred chHHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 030134 28 NWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLA 107 (182)
Q Consensus 28 ~~~~E~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~ 107 (182)
.+..|+.+|+..|+.......+| |+ |+..|..++...= ==..+...+.+++++|+.--+.|.|+|+.|.
T Consensus 19 ~L~~en~kL~~~ve~~ee~na~L-~~--------e~~~L~~q~~s~Q--qal~~aK~l~eEledLk~~~~~lEE~~~~L~ 87 (193)
T PF14662_consen 19 KLADENAKLQRSVETAEEGNAQL-AE--------EITDLRKQLKSLQ--QALQKAKALEEELEDLKTLAKSLEEENRSLL 87 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777776655553 22 3444444444321 1133455677788888888888888888877
Q ss_pred HHHHHHHH
Q 030134 108 KKVKEKEK 115 (182)
Q Consensus 108 ~kl~e~~~ 115 (182)
.+....++
T Consensus 88 aq~rqlEk 95 (193)
T PF14662_consen 88 AQARQLEK 95 (193)
T ss_pred HHHHHHHH
Confidence 77665544
No 41
>PRK11637 AmiB activator; Provisional
Probab=50.92 E-value=1.9e+02 Score=26.07 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHhHHHHHHH
Q 030134 60 LKELQSVEQQIDSGLKLIRSRKNQ--LMLQSISELQKKDKLLKEQ 102 (182)
Q Consensus 60 ~kEL~~LE~qLe~sL~~IRsrK~q--lm~~qi~~LqkKe~~L~ee 102 (182)
.++|..|+.+|...-..|+....+ .+..+|..++++...++++
T Consensus 74 ~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 74 LAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777776666654433 3445555555544443333
No 42
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=50.60 E-value=72 Score=29.72 Aligned_cols=50 Identities=30% Similarity=0.297 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 030134 60 LKELQSVEQQIDS--GLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKK 109 (182)
Q Consensus 60 ~kEL~~LE~qLe~--sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k 109 (182)
+.|..+|++.+.. +.++|=.+|.+.+...+..+++..+.+.|+|+.|.+-
T Consensus 360 ~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~kn 411 (493)
T KOG0804|consen 360 ITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKN 411 (493)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555544443 5566777888888888999999888888999888653
No 43
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=50.25 E-value=63 Score=21.44 Aligned_cols=30 Identities=33% Similarity=0.402 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 030134 84 LMLQSISELQKKDKLLKEQNNLLAKKVKEK 113 (182)
Q Consensus 84 lm~~qi~~LqkKe~~L~eeN~~L~~kl~e~ 113 (182)
-+..+|..++++...+..+|..|..++...
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445678899999999999999999999876
No 44
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=50.24 E-value=91 Score=23.46 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 030134 60 LKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKE 112 (182)
Q Consensus 60 ~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e 112 (182)
++-+..||+||-.-++.|-.-|.++ .+|-..-..|+-+|..|++.+.+
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l-----~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHL-----GSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHhhHHHHHHHhCC
Confidence 4567788888877666555544432 22222233344444444555544
No 45
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=49.42 E-value=87 Score=23.41 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 030134 81 KNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKL 116 (182)
Q Consensus 81 K~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~~ 116 (182)
....|.+++..|++....|.|+|..|+..-......
T Consensus 16 ~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~ 51 (110)
T PRK13169 16 NLGVLLKELGALKKQLAELLEENTALRLENDKLRER 51 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999886655443
No 46
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=49.22 E-value=67 Score=30.03 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 030134 63 LQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKE 112 (182)
Q Consensus 63 L~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e 112 (182)
+..||++|+.- | +-.++|..+..+++.|.+.|..+|..|+.++..
T Consensus 78 asELEKqLaaL----r-qElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 78 AAQMQKQYEEI----R-RELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHH----H-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666554 2 223567777888899999999999999999843
No 47
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=48.76 E-value=2.5e+02 Score=26.84 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=13.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 030134 86 LQSISELQKKDKLLKEQNNLLAKKVK 111 (182)
Q Consensus 86 ~~qi~~LqkKe~~L~eeN~~L~~kl~ 111 (182)
..+..+++.+...|.++...|..+..
T Consensus 212 ~~q~~e~~~ri~~LEedi~~l~qk~~ 237 (546)
T PF07888_consen 212 KEQLAEARQRIRELEEDIKTLTQKEK 237 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555553
No 48
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=47.18 E-value=36 Score=29.99 Aligned_cols=54 Identities=26% Similarity=0.399 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhHHHH------HHHHHHHH-------------------------------HHHHHHHHhHHHHHHHH
Q 030134 61 KELQSVEQQIDSGLKLIR------SRKNQLML-------------------------------QSISELQKKDKLLKEQN 103 (182)
Q Consensus 61 kEL~~LE~qLe~sL~~IR------srK~qlm~-------------------------------~qi~~LqkKe~~L~eeN 103 (182)
.....||.+|..++..|. +.|++|+. -.++.|++|.+.|.++|
T Consensus 97 ~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN 176 (306)
T PF04849_consen 97 ERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEEN 176 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 667789999999888887 45666641 12588999999999999
Q ss_pred HHHHHHHHHHH
Q 030134 104 NLLAKKVKEKE 114 (182)
Q Consensus 104 ~~L~~kl~e~~ 114 (182)
..|+.......
T Consensus 177 ~~LR~Ea~~L~ 187 (306)
T PF04849_consen 177 EQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHhh
Confidence 99999877654
No 49
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=47.18 E-value=75 Score=22.99 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 77 IRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 77 IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
||+.=......+++.|+.+...+..+|..|...|.+..
T Consensus 70 i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 70 IRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444555567789999999999999999999997643
No 50
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=45.50 E-value=24 Score=32.82 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHH
Q 030134 57 DLSLKELQSVEQQIDSGLKLIRS 79 (182)
Q Consensus 57 ~Ls~kEL~~LE~qLe~sL~~IRs 79 (182)
+.++-+..-|=+-=|..|++||.
T Consensus 233 G~slPs~lPLTKaEEriLKrvRR 255 (472)
T KOG0709|consen 233 GYSLPSKLPLTKAEERILKRVRR 255 (472)
T ss_pred cCcCcccCCchHHHHHHHHHHHH
Confidence 34555555555666777888874
No 51
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=44.95 E-value=83 Score=26.94 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=31.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 030134 72 SGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLS 118 (182)
Q Consensus 72 ~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~~~~ 118 (182)
.|+++=|.+.-+.. .+++.|...|..+|..|+.++.+......
T Consensus 204 ~A~~kSR~~~k~~~----~e~~~r~~~leken~~lr~~v~~l~~el~ 246 (269)
T KOG3119|consen 204 EAVRKSRDKRKQKE----DEMAHRVAELEKENEALRTQVEQLKKELA 246 (269)
T ss_pred HHHHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555554443333 78889999999999999999988776543
No 52
>PHA02109 hypothetical protein
Probab=43.96 E-value=90 Score=25.62 Aligned_cols=48 Identities=19% Similarity=0.387 Sum_probs=30.6
Q ss_pred HHHHHHhcccCCCCCCCCC--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 030134 41 EVLQRNQKHFMGEDLADLS--LKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLK 100 (182)
Q Consensus 41 e~Lq~~~R~l~GEdL~~Ls--~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~ 100 (182)
|......|...||.|++|+ ++++-.||-.|| .+.++...++.|...+.
T Consensus 171 E~ID~~~~~~t~~~L~~~~~~L~~I~~L~~ki~------------~LS~E~~Q~~~Ki~N~R 220 (233)
T PHA02109 171 ERIDQVERSHTGENLEGLTDKLKQISELTIKLE------------ALSDEACQVKHKILNLR 220 (233)
T ss_pred HHHHHHHhccchhhhhhhhHHHHhhHHHHHHHH------------HHHHHHHHHHHHHHHHH
Confidence 3333444777899999987 667777766554 45566666666654443
No 53
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=43.54 E-value=1.1e+02 Score=21.10 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=34.8
Q ss_pred HHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 65 SVEQQIDSGLKLIR---SRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 65 ~LE~qLe~sL~~IR---srK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
.||.+|-+||..+- +++-+-..+...+|+..-..-..+|..|+.++....
T Consensus 3 eLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls 55 (70)
T PF04899_consen 3 ELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLS 55 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 58999999887765 566667777888888776655666666666655543
No 54
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=42.74 E-value=1.4e+02 Score=24.05 Aligned_cols=9 Identities=22% Similarity=0.486 Sum_probs=5.2
Q ss_pred HHHHHHhhh
Q 030134 3 RILERYERY 11 (182)
Q Consensus 3 ~iLeRY~~~ 11 (182)
.+|++|+..
T Consensus 95 ~~l~~y~~l 103 (189)
T PF10211_consen 95 MTLDAYQTL 103 (189)
T ss_pred HHHHHHHHH
Confidence 456666554
No 55
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=42.31 E-value=70 Score=18.70 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030134 62 ELQSVEQQIDSGLKLIRSRKNQLMLQSISELQK 94 (182)
Q Consensus 62 EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~Lqk 94 (182)
.|..|+..+..|...-+=-+--.+.++|..|++
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 467788888888887777777777777777764
No 56
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=41.39 E-value=65 Score=25.86 Aligned_cols=42 Identities=19% Similarity=0.457 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 030134 63 LQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEK 113 (182)
Q Consensus 63 L~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~ 113 (182)
|..+|..|..|+.+ +-||..+| +.||. |.+++..|+..+.+.
T Consensus 2 LeD~EsklN~AIER-----nalLE~EL---dEKE~-L~~~~QRLkDE~RDL 43 (166)
T PF04880_consen 2 LEDFESKLNQAIER-----NALLESEL---DEKEN-LREEVQRLKDELRDL 43 (166)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHH---HHHHH-HHHCH----------
T ss_pred HHHHHHHHHHHHHH-----hHHHHHHH---HHHHH-HHHHHHHHHHHHHHH
Confidence 67788999888875 56666555 33333 555555555555443
No 57
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=41.08 E-value=2.5e+02 Score=24.92 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHhcccC-----CCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 030134 33 YSKLKARMEVLQRNQKHFM-----GEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLA 107 (182)
Q Consensus 33 ~~~Lk~~ie~Lq~~~R~l~-----GEdL~~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~ 107 (182)
++.|+.+...|++..+-+. +.|..-...++= ..|..-|...|.+ +.-+..++..|++|...++..++.|+
T Consensus 32 AEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~----~~La~lL~~sre~-Nk~L~~Ev~~Lrqkl~E~qGD~KlLR 106 (319)
T PF09789_consen 32 AEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKEN----KNLAQLLSESREQ-NKKLKEEVEELRQKLNEAQGDIKLLR 106 (319)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccch----hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 3445555566666666555 333222222222 2333344455544 34566789999999999999999999
Q ss_pred HHHHHH
Q 030134 108 KKVKEK 113 (182)
Q Consensus 108 ~kl~e~ 113 (182)
.++...
T Consensus 107 ~~la~~ 112 (319)
T PF09789_consen 107 EKLARQ 112 (319)
T ss_pred HHHHhh
Confidence 988653
No 58
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=40.94 E-value=1.9e+02 Score=23.18 Aligned_cols=56 Identities=25% Similarity=0.309 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 030134 60 LKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLL 117 (182)
Q Consensus 60 ~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~~~ 117 (182)
+.+|......|..+|..+ ...+-+...|..|++....|.+.-+.+.+.|.+.....
T Consensus 4 ~~~L~~~d~~L~~~L~~l--~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L 59 (188)
T PF10018_consen 4 AEDLIEADDELSSALEEL--QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKEL 59 (188)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999987 45666677788888877777777777777777665544
No 59
>PLN02320 seryl-tRNA synthetase
Probab=40.91 E-value=3.2e+02 Score=25.81 Aligned_cols=78 Identities=12% Similarity=0.188 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHH
Q 030134 32 EYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVE---QQIDSGLKLIRSRKNQLMLQSISELQKK--DKLLKEQNNLL 106 (182)
Q Consensus 32 E~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~~LE---~qLe~sL~~IRsrK~qlm~~qi~~LqkK--e~~L~eeN~~L 106 (182)
++..++...+.+..+++.. |-+ ++++++..|. .++..-+..+|.+++.+-. +|....++ ...|.++-+.|
T Consensus 68 D~k~ir~n~~~v~~~l~~R-~~~---~~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk-~i~~~~~~~~~~~l~~~~k~l 142 (502)
T PLN02320 68 DFKWIRDNKEAVAINIRNR-NSN---ANLELVLELYENMLALQKEVERLRAERNAVAN-KMKGKLEPSERQALVEEGKNL 142 (502)
T ss_pred CHHHHHhCHHHHHHHHHhc-CCC---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhCCCCHHHHHHHHHHH
Confidence 4566777778887777765 334 3488888887 4556666677777766432 33221111 12455555555
Q ss_pred HHHHHHHH
Q 030134 107 AKKVKEKE 114 (182)
Q Consensus 107 ~~kl~e~~ 114 (182)
+.++.+.+
T Consensus 143 k~~i~~le 150 (502)
T PLN02320 143 KEGLVTLE 150 (502)
T ss_pred HHHHHHHH
Confidence 55555543
No 60
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=38.92 E-value=1.1e+02 Score=20.73 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 82 NQLMLQSISELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 82 ~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
...+..++..++++...+..+|..|+.++....
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 346677889999999999999999999987654
No 61
>PRK11637 AmiB activator; Provisional
Probab=38.37 E-value=3e+02 Score=24.78 Aligned_cols=78 Identities=10% Similarity=0.142 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHhHHHHHHHHHHH
Q 030134 29 WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQ--LMLQSISELQKKDKLLKEQNNLL 106 (182)
Q Consensus 29 ~~~E~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~~LE~qLe~sL~~IRsrK~q--lm~~qi~~LqkKe~~L~eeN~~L 106 (182)
...+...++.+++.++..+.. .-+++..++.+|+..-.+|.....+ -...+|..++++...+..+-..+
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~---------~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~ 115 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQ---------QQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKL 115 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666654433 1234556666666655555544333 35566666666666666666666
Q ss_pred HHHHHHHHH
Q 030134 107 AKKVKEKEK 115 (182)
Q Consensus 107 ~~kl~e~~~ 115 (182)
+.+|.....
T Consensus 116 q~~l~~~~~ 124 (428)
T PRK11637 116 EQQQAAQER 124 (428)
T ss_pred HHHHHHHHH
Confidence 666655443
No 62
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=38.30 E-value=1.3e+02 Score=20.61 Aligned_cols=30 Identities=33% Similarity=0.323 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 030134 84 LMLQSISELQKKDKLLKEQNNLLAKKVKEK 113 (182)
Q Consensus 84 lm~~qi~~LqkKe~~L~eeN~~L~~kl~e~ 113 (182)
-....|..|+.+...+......|..++...
T Consensus 30 ~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~ 59 (74)
T PF12329_consen 30 KLNNTIKKLRAKIKELEKQIKELKKKLEEL 59 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 63
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=38.23 E-value=2e+02 Score=22.61 Aligned_cols=83 Identities=22% Similarity=0.381 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHhccc--CCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHH---------HHHHHHHHHhHHH
Q 030134 30 TLEYSKLKARMEVLQRNQKHF--MGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLM---------LQSISELQKKDKL 98 (182)
Q Consensus 30 ~~E~~~Lk~~ie~Lq~~~R~l--~GEdL~~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm---------~~qi~~LqkKe~~ 98 (182)
...+..|+..+..++..+++. +||+ |.+-|-.+|.-.-..-..+|..|-.+|. ...+...+.|...
T Consensus 12 Rl~~~~lk~~l~k~~~ql~~ke~lge~---L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~ 88 (177)
T PF13870_consen 12 RLKNITLKHQLAKLEEQLRQKEELGEG---LHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHF 88 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777666654 5655 7777777776666666667765544443 3455777888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030134 99 LKEQNNLLAKKVKEKEK 115 (182)
Q Consensus 99 L~eeN~~L~~kl~e~~~ 115 (182)
+..++..++..|.....
T Consensus 89 ~~~~~~~l~~~l~~~~~ 105 (177)
T PF13870_consen 89 LSEELERLKQELKDREE 105 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999888876543
No 64
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=37.29 E-value=42 Score=24.42 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 030134 61 KELQSVEQQIDSGLKLIRSRKNQ 83 (182)
Q Consensus 61 kEL~~LE~qLe~sL~~IRsrK~q 83 (182)
.||.++|++.+..|..|+.+=+.
T Consensus 28 ~EL~~~Eq~~q~Wl~sI~ekd~n 50 (92)
T PF15243_consen 28 TELQQQEQQHQAWLQSIAEKDNN 50 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC
Confidence 47889999999999998876543
No 65
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=36.30 E-value=2.3e+02 Score=27.65 Aligned_cols=53 Identities=13% Similarity=0.310 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 62 ELQSVEQQIDSGLKLIRSRKNQL---MLQSISELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 62 EL~~LE~qLe~sL~~IRsrK~ql---m~~qi~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
.|..|+++-+.=+...+.++..+ ..++++.|+.-.+.|++|++.|.-.+....
T Consensus 5 kL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s 60 (654)
T PF09798_consen 5 KLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLS 60 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58888888888888888887764 468889999999999999999988876543
No 66
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=35.95 E-value=50 Score=17.96 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 030134 32 EYSKLKARMEVLQRNQ 47 (182)
Q Consensus 32 E~~~Lk~~ie~Lq~~~ 47 (182)
|+.+|+.+|..|++.+
T Consensus 2 E~~rlr~rI~dLer~L 17 (23)
T PF04508_consen 2 EMNRLRNRISDLERQL 17 (23)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5667777777776543
No 67
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=35.85 E-value=1.8e+02 Score=21.44 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 030134 84 LMLQSISELQKKDKLLKEQNNLLAKKVK 111 (182)
Q Consensus 84 lm~~qi~~LqkKe~~L~eeN~~L~~kl~ 111 (182)
-..++|..|+++...|..||..|++.+.
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888889888887763
No 68
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=35.41 E-value=1.6e+02 Score=20.82 Aligned_cols=34 Identities=35% Similarity=0.401 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 030134 80 RKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEK 113 (182)
Q Consensus 80 rK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~ 113 (182)
.|.+-..|.|.-||-....|.+.|..|...+...
T Consensus 11 ~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~ 44 (79)
T PRK15422 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA 44 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788999999999999999999999888764
No 69
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=35.02 E-value=1.1e+02 Score=23.00 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 030134 85 MLQSISELQKKDKLLKEQNNLLAKKVKEKEKLL 117 (182)
Q Consensus 85 m~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~~~ 117 (182)
+..+|..|++....|.|+|..|+-.......-.
T Consensus 20 l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL 52 (114)
T COG4467 20 LLAELGGLKQHLGSLVEENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHh
Confidence 457899999999999999999998776655443
No 70
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=34.99 E-value=1.7e+02 Score=20.99 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=27.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 030134 66 VEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEK 113 (182)
Q Consensus 66 LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~ 113 (182)
++...+.+...+-.++ +.+...|..+.++...+..+-..|+.+|.+.
T Consensus 57 v~~~~~ea~~~Le~~~-e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 57 VKQEKEEARTELKERL-ETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred hhccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544 3445566666777776777666777766554
No 71
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=34.66 E-value=71 Score=21.72 Aligned_cols=25 Identities=12% Similarity=0.291 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 030134 60 LKELQSVEQQIDSGLKLIRSRKNQL 84 (182)
Q Consensus 60 ~kEL~~LE~qLe~sL~~IRsrK~ql 84 (182)
-.|+..+|+.|......+.+||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6799999999999999999999764
No 72
>PF06721 DUF1204: Protein of unknown function (DUF1204); InterPro: IPR009596 This family represents the C terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.
Probab=34.63 E-value=2.5e+02 Score=23.33 Aligned_cols=79 Identities=22% Similarity=0.278 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCCCCH--HH----HHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHhHHHHHHHH
Q 030134 31 LEYSKLKARMEVLQRNQKHFMGEDLADLSL--KE----LQSVEQQIDSGLKLIRSRKNQLMLQSI-SELQKKDKLLKEQN 103 (182)
Q Consensus 31 ~E~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~--kE----L~~LE~qLe~sL~~IRsrK~qlm~~qi-~~LqkKe~~L~eeN 103 (182)
.+...+|..++.|- .+|-.||++++-+.. ++ -..||..+-.--++.|+||.......- ..|.+-+..++-.-
T Consensus 15 ~~a~~~k~~~~~la-~~~~~~~~~~~r~~~d~~~~~~K~deLedr~~se~KRLRsrR~~~AEn~rrs~L~kv~~l~QARi 93 (228)
T PF06721_consen 15 KEAAHAKSEHATLA-YQRTVMGQERDRCQDDAEKMNVKFDELEDRISSEQKRLRSRRINYAENNRRSALEKVASLYQARI 93 (228)
T ss_pred HHhhhhhhHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666663 567778888876543 32 346777777788888887766543222 23333333444444
Q ss_pred HHHHHHH
Q 030134 104 NLLAKKV 110 (182)
Q Consensus 104 ~~L~~kl 110 (182)
..++..|
T Consensus 94 dRvK~Hi 100 (228)
T PF06721_consen 94 DRVKAHI 100 (228)
T ss_pred HHHHHHh
Confidence 4444443
No 73
>PRK09039 hypothetical protein; Validated
Probab=33.66 E-value=3.4e+02 Score=24.00 Aligned_cols=48 Identities=21% Similarity=0.348 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHH
Q 030134 30 TLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKL 98 (182)
Q Consensus 30 ~~E~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~ 98 (182)
..++..|+.+|+.|+.. |..||..|+.+=.+.+..+. +|.+|+++...
T Consensus 136 ~~~V~~L~~qI~aLr~Q----------------la~le~~L~~ae~~~~~~~~-----~i~~L~~~L~~ 183 (343)
T PRK09039 136 LAQVELLNQQIAALRRQ----------------LAALEAALDASEKRDRESQA-----KIADLGRRLNV 183 (343)
T ss_pred hHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 34567788888888866 88888888888777755443 45566555443
No 74
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=33.47 E-value=5.6e+02 Score=26.48 Aligned_cols=86 Identities=20% Similarity=0.292 Sum_probs=49.7
Q ss_pred cchHHHHHHHHHHHHHHH-------HHhcccCCCCCCCCCHHHHHHHHHH---HHHHhHHHHHH------HHHHHHHHHH
Q 030134 27 GNWTLEYSKLKARMEVLQ-------RNQKHFMGEDLADLSLKELQSVEQQ---IDSGLKLIRSR------KNQLMLQSIS 90 (182)
Q Consensus 27 ~~~~~E~~~Lk~~ie~Lq-------~~~R~l~GEdL~~Ls~kEL~~LE~q---Le~sL~~IRsr------K~qlm~~qi~ 90 (182)
+.++.|+..++.+++.|. ...-+ .|-|-...|.-++.+||+| |-.+|-+.|.- -.|.+.++++
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmee-kG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE 406 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEE-KGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELE 406 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 356677777777765544 33322 2888888898999999976 56677777732 1123334444
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 030134 91 ELQKKDKLLKEQNNLLAKKVKEK 113 (182)
Q Consensus 91 ~LqkKe~~L~eeN~~L~~kl~e~ 113 (182)
..+.....|......|..++...
T Consensus 407 ~k~sE~~eL~r~kE~Lsr~~d~a 429 (1243)
T KOG0971|consen 407 KKNSELEELRRQKERLSRELDQA 429 (1243)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Confidence 43333444444444555554443
No 75
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=32.92 E-value=1.4e+02 Score=21.01 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 82 NQLMLQSISELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 82 ~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
...+..+++.+++....|.++|..|+-++....
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566799999999999999999999886654
No 76
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=32.26 E-value=1.3e+02 Score=22.03 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 030134 83 QLMLQSISELQKKDKLLKEQNNLLAKKVKEK 113 (182)
Q Consensus 83 qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~ 113 (182)
|+..++-.-|++|...+.++|+.|...|...
T Consensus 11 qFvEEEa~LlRRkl~ele~eN~~l~~EL~ky 41 (96)
T PF11365_consen 11 QFVEEEAELLRRKLSELEDENKQLTEELNKY 41 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777777766553
No 77
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.38 E-value=97 Score=27.43 Aligned_cols=41 Identities=29% Similarity=0.353 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 030134 56 ADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNL 105 (182)
Q Consensus 56 ~~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~ 105 (182)
.+||..|-..| -+||.||.||+ ++|+.|+.......++-..
T Consensus 9 ~~Ls~~E~~eL--------~~ir~rk~qL~-deIq~Lk~Ei~ev~~eid~ 49 (395)
T KOG0930|consen 9 NDLSEEERMEL--------ENIRRRKQELL-DEIQRLKDEIAEVMEEIDN 49 (395)
T ss_pred CCCCHHHHHhH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhh
Confidence 45777766554 47999998876 6788888776665555433
No 78
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.24 E-value=5.7e+02 Score=25.93 Aligned_cols=83 Identities=22% Similarity=0.199 Sum_probs=54.9
Q ss_pred cchHHHHHHHHHHHHHHHHHhcccCC--CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 030134 27 GNWTLEYSKLKARMEVLQRNQKHFMG--EDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNN 104 (182)
Q Consensus 27 ~~~~~E~~~Lk~~ie~Lq~~~R~l~G--EdL~~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~ 104 (182)
.....++.+|-++.+-+=...-.=-| |....+..+++.+|-.+...=-.-||. +.-+|+.++++++.|.-+|.
T Consensus 614 ~~lD~~f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~-----lD~~~e~lkQ~~~~l~~e~e 688 (970)
T KOG0946|consen 614 LALDFEFKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRE-----LDYQIENLKQMEKELQVENE 688 (970)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHH
Confidence 36678888887777766555433333 234457777777777666553223333 34577888888888888888
Q ss_pred HHHHHHHHHH
Q 030134 105 LLAKKVKEKE 114 (182)
Q Consensus 105 ~L~~kl~e~~ 114 (182)
.|..++....
T Consensus 689 eL~~~vq~~~ 698 (970)
T KOG0946|consen 689 ELEEEVQDFI 698 (970)
T ss_pred HHHHHHHHHH
Confidence 8888876653
No 79
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=30.98 E-value=2.9e+02 Score=22.48 Aligned_cols=25 Identities=44% Similarity=0.482 Sum_probs=13.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 90 SELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 90 ~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
.+++.+...|.++...|..+|.|.+
T Consensus 167 ~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 167 KEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445556666666666666554
No 80
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=30.01 E-value=1.2e+02 Score=19.33 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 030134 81 KNQLMLQSISELQKKDKLLKEQNN 104 (182)
Q Consensus 81 K~qlm~~qi~~LqkKe~~L~eeN~ 104 (182)
|-+=+-.+|.+|++|...|..+.-
T Consensus 20 kiedid~qIaeLe~KR~~Lv~qHP 43 (46)
T PF08946_consen 20 KIEDIDEQIAELEAKRQRLVDQHP 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344456788888888777766543
No 81
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=29.18 E-value=2.8e+02 Score=26.99 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHh
Q 030134 33 YSKLKARMEVLQRNQ 47 (182)
Q Consensus 33 ~~~Lk~~ie~Lq~~~ 47 (182)
|..++.+++..++..
T Consensus 354 Y~~yk~kl~~vEr~~ 368 (652)
T COG2433 354 YLAYKPKLEKVERKL 368 (652)
T ss_pred HHHHHHHHHHHHHhc
Confidence 334444444444443
No 82
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=29.06 E-value=3.3e+02 Score=23.69 Aligned_cols=53 Identities=30% Similarity=0.327 Sum_probs=35.8
Q ss_pred CHHHHHHHHHH-HHH--HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030134 59 SLKELQSVEQQ-IDS--GLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEK 115 (182)
Q Consensus 59 s~kEL~~LE~q-Le~--sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~ 115 (182)
...|+..||+. +.+ |..+-|.|| ++.|+.|.+|.+.|.-.|..|...+.....
T Consensus 200 e~qe~~kleRkrlrnreaa~Kcr~rk----LdrisrLEdkv~~lk~~n~~L~~~l~~l~~ 255 (279)
T KOG0837|consen 200 EDQEKIKLERKRLRNREAASKCRKRK----LDRISRLEDKVKTLKIYNRDLASELSKLKE 255 (279)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHH----HHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Confidence 34567777762 222 444444444 677899999999999999988777666544
No 83
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=28.52 E-value=2.2e+02 Score=27.18 Aligned_cols=48 Identities=27% Similarity=0.272 Sum_probs=38.8
Q ss_pred HHHhHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 030134 71 DSGLKL-IRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLS 118 (182)
Q Consensus 71 e~sL~~-IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~~~~ 118 (182)
+.+++. |..-=.+.|.++|.++=+-...|.++|..|..|+.+.+....
T Consensus 353 ~~~~r~~v~nsI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~ 401 (557)
T PF01763_consen 353 QQAFRDSVSNSINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELS 401 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 555567788999999999999999999999999999887654
No 84
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=28.20 E-value=3e+02 Score=21.71 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 030134 58 LSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKV 110 (182)
Q Consensus 58 Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl 110 (182)
.+-.|+.+++..+..++..+|+--.-+-..++..++.....|..+-..|+.++
T Consensus 44 vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 44 VTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888855444334444444444444444444444433
No 85
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=27.65 E-value=3.9e+02 Score=22.87 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=27.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHH------HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 030134 51 MGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQ------LMLQSISELQKKDKLLKEQNNLLAKKVKE 112 (182)
Q Consensus 51 ~GEdL~~Ls~kEL~~LE~qLe~sL~~IRsrK~q------lm~~qi~~LqkKe~~L~eeN~~L~~kl~e 112 (182)
.|-|++.+.++ -.++.|.+||-+-=-+--+ =|.+-..+++.|-..++.+|..|.+.+.+
T Consensus 96 iGHDvEhiD~e---lvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~elee 160 (290)
T COG4026 96 IGHDVEHIDVE---LVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEE 160 (290)
T ss_pred CCCCccccCHH---HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788777654 3344455444221111111 22333445555555555555555544443
No 86
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=27.22 E-value=4.2e+02 Score=23.10 Aligned_cols=68 Identities=18% Similarity=0.307 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 030134 31 LEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKV 110 (182)
Q Consensus 31 ~E~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl 110 (182)
.++..+..+++.|+.....+ .+||..||+.-+.....++.-+ .+...+.+.|.....+.+.+...+
T Consensus 43 ~~~~~~~~el~~le~Ee~~l---------~~eL~~LE~e~~~l~~el~~le-----~e~~~l~~eE~~~~~~~n~~~~~l 108 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEEL---------LQELEELEKEREELDQELEELE-----EELEELDEEEEEYWREYNELQLEL 108 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555444432 4566677766666665555533 344555555655566666665555
Q ss_pred HH
Q 030134 111 KE 112 (182)
Q Consensus 111 ~e 112 (182)
.+
T Consensus 109 ~~ 110 (314)
T PF04111_consen 109 IE 110 (314)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 87
>smart00338 BRLZ basic region leucin zipper.
Probab=26.95 E-value=1.8e+02 Score=18.84 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 030134 83 QLMLQSISELQKKDKLLKEQNNLLAKKV 110 (182)
Q Consensus 83 qlm~~qi~~LqkKe~~L~eeN~~L~~kl 110 (182)
+.|..+...|+.+...|..++..|+..+
T Consensus 36 ~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 36 EQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666666666665544
No 88
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=26.74 E-value=2.8e+02 Score=22.85 Aligned_cols=30 Identities=30% Similarity=0.359 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 030134 80 RKNQLMLQSISELQKKDKLLKEQNNLLAKK 109 (182)
Q Consensus 80 rK~qlm~~qi~~LqkKe~~L~eeN~~L~~k 109 (182)
|+-|..+.+|..|+.-.+.|+++|..|+.-
T Consensus 48 rrlQ~hl~EIR~LKe~NqkLqedNqELRdL 77 (195)
T PF10226_consen 48 RRLQQHLNEIRGLKEVNQKLQEDNQELRDL 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555566666655543
No 89
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=26.34 E-value=2.1e+02 Score=19.37 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 84 LMLQSISELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 84 lm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
-+.+.|+.|=..-..|..+|..|+.++....
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~ 34 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWR 34 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777778888888888776543
No 90
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=26.24 E-value=4.9e+02 Score=23.53 Aligned_cols=89 Identities=25% Similarity=0.352 Sum_probs=52.8
Q ss_pred hHHHHHHhhhhhhhhhhccCCCCCccchHHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHH
Q 030134 2 ERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRK 81 (182)
Q Consensus 2 ~~iLeRY~~~s~~~~~~~~~~~e~~~~~~~E~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~~LE~qLe~sL~~IRsrK 81 (182)
..+++||...... +..++ .. ....+|.+|-++...|+...- .++++.+++.+|+.+-.-+...+
T Consensus 10 ~~~~~r~~el~~~---L~~p~--v~-~d~~~~~~lske~a~l~~iv~----------~~~~~~~~~~~l~~a~~~l~~~~ 73 (363)
T COG0216 10 ESLLERYEELEAL---LSDPE--VI-SDPDEYRKLSKEYAELEPIVE----------KYREYKKAQEDLEDAKEMLAEEK 73 (363)
T ss_pred HHHHHHHHHHHHH---hcCcc--cc-cCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhccC
Confidence 5688888875432 22222 11 224566666666655554432 35677788888877665555444
Q ss_pred H----HHHHHHHHHHHHhHHHHHHHHHHH
Q 030134 82 N----QLMLQSISELQKKDKLLKEQNNLL 106 (182)
Q Consensus 82 ~----qlm~~qi~~LqkKe~~L~eeN~~L 106 (182)
+ .+..++|.+++.+...|.++-+.|
T Consensus 74 D~em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 74 DPEMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 455677777777776666665544
No 91
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=25.60 E-value=97 Score=19.37 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 030134 80 RKNQLMLQSISELQKKDKLLKEQNNLLAKKVK 111 (182)
Q Consensus 80 rK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~ 111 (182)
|.+..+.-.|.+|.++.-.|..+|-.|+..+.
T Consensus 14 K~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 14 KRNSALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp ----------------HHHHHHHHHHHHHHHH
T ss_pred hHhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 44556667788888888888888888887763
No 92
>PRK14127 cell division protein GpsB; Provisional
Probab=25.21 E-value=2.4e+02 Score=21.07 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=20.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030134 88 SISELQKKDKLLKEQNNLLAKKVKEKEK 115 (182)
Q Consensus 88 qi~~LqkKe~~L~eeN~~L~~kl~e~~~ 115 (182)
.++.+.+....|.++|..|+.++.+...
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677788888888888877554
No 93
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=24.86 E-value=1.3e+02 Score=19.30 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=19.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHHHH
Q 030134 54 DLADLSLKELQSVEQQIDSGLKLIRSR 80 (182)
Q Consensus 54 dL~~Ls~kEL~~LE~qLe~sL~~IRsr 80 (182)
||-.+|.+||...-..+...|-..|-.
T Consensus 1 elr~~s~~EL~~~l~~lr~eLf~Lr~~ 27 (55)
T TIGR00012 1 ELREKSKEELAKKLDELKKELFELRFQ 27 (55)
T ss_pred CHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888888887777777743
No 94
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=24.74 E-value=2.7e+02 Score=21.32 Aligned_cols=54 Identities=15% Similarity=0.112 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 030134 57 DLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKV 110 (182)
Q Consensus 57 ~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl 110 (182)
++|++|+..+=..+...-...-..-..++.+.+..+.++...|...-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~ 110 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCI 110 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388998888765543211111111223455555666666555555555554444
No 95
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=24.70 E-value=97 Score=26.96 Aligned_cols=36 Identities=25% Similarity=0.518 Sum_probs=29.4
Q ss_pred HHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhHHH
Q 030134 42 VLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLI 77 (182)
Q Consensus 42 ~Lq~~~R~l~GEdL~~Ls~kEL~~LE~qLe~sL~~I 77 (182)
.+++.+++..=|+|.+|++.||.+|=.+|-..+..|
T Consensus 203 ~~~~r~~~~SrEeL~~Mt~~EL~qL~~~L~~qIq~v 238 (285)
T PF06937_consen 203 SLQRRHPHYSREELNSMTLDELKQLNEKLLQQIQDV 238 (285)
T ss_pred cccccccccCHHHhhhCCHHHHHHHHHHHHHHHHHH
Confidence 457778889999999999999999988876555444
No 96
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=24.63 E-value=3.3e+02 Score=22.00 Aligned_cols=27 Identities=22% Similarity=0.323 Sum_probs=17.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 030134 86 LQSISELQKKDKLLKEQNNLLAKKVKE 112 (182)
Q Consensus 86 ~~qi~~LqkKe~~L~eeN~~L~~kl~e 112 (182)
.++|..|+.+...|..++..|..+..-
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~ 136 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAI 136 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777777777777777666543
No 97
>PLN02372 violaxanthin de-epoxidase
Probab=24.60 E-value=5.3e+02 Score=23.99 Aligned_cols=43 Identities=14% Similarity=0.341 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 030134 33 YSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQ 87 (182)
Q Consensus 33 ~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~ 87 (182)
.++|.+.++..++.+ ++|..++|.+|+.-+++|+..-..++..
T Consensus 363 ~~~l~~~~e~~e~~i------------~~e~~~~~~e~~~~v~~~~~~~~~~~~~ 405 (455)
T PLN02372 363 LERLEKDVEEGEKTI------------VKEARQIEEELEKEVEKLGKEEESLFKR 405 (455)
T ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555433 6779999999999999999876666543
No 98
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=24.02 E-value=6.3e+02 Score=24.00 Aligned_cols=29 Identities=41% Similarity=0.635 Sum_probs=20.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHH---HHHHHHH
Q 030134 54 DLADLSLKELQSVEQQIDSGLKLIR---SRKNQLM 85 (182)
Q Consensus 54 dL~~Ls~kEL~~LE~qLe~sL~~IR---srK~qlm 85 (182)
||+.||.+||+ +|+|.|++++= .-|.||.
T Consensus 198 ~i~~lsteelr---~qVD~A~~q~VnP~k~KeQLV 229 (621)
T KOG3759|consen 198 DIDKLSTEELR---RQVDDALKQLVNPFKEKEQLV 229 (621)
T ss_pred CcccccHHHHH---HHHHHHHHHHhChHHHHHHHH
Confidence 48888888765 68999998864 3455554
No 99
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=23.90 E-value=1.2e+02 Score=19.54 Aligned_cols=12 Identities=50% Similarity=0.418 Sum_probs=7.2
Q ss_pred CCCCCHHHHHHH
Q 030134 55 LADLSLKELQSV 66 (182)
Q Consensus 55 L~~Ls~kEL~~L 66 (182)
|..+|++||++.
T Consensus 5 Lk~ls~~eL~~r 16 (49)
T PF11629_consen 5 LKFLSYEELQQR 16 (49)
T ss_dssp GGGS-HHHHHHH
T ss_pred HhhCCHHHHHHH
Confidence 456788887653
No 100
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=23.55 E-value=4.2e+02 Score=21.84 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhcccCC
Q 030134 30 TLEYSKLKARMEVLQRNQKHFMG 52 (182)
Q Consensus 30 ~~E~~~Lk~~ie~Lq~~~R~l~G 52 (182)
..++..++...+.|+...-..+.
T Consensus 26 ~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 26 RSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444443
No 101
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=23.53 E-value=4.8e+02 Score=22.45 Aligned_cols=83 Identities=22% Similarity=0.348 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhHHH------------------HHHHHHHHHHHHHHHH
Q 030134 32 EYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLI------------------RSRKNQLMLQSISELQ 93 (182)
Q Consensus 32 E~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~~LE~qLe~sL~~I------------------RsrK~qlm~~qi~~Lq 93 (182)
.++.|..+++.|...+..=+ ++|..+--.+|..|+.+.+..-..| +.+.++.|..+|..-+
T Consensus 121 qIa~L~rqlq~lk~~qqdEl-del~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~r 199 (258)
T PF15397_consen 121 QIANLVRQLQQLKDSQQDEL-DELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFR 199 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777766666655422 1223333445666665555443333 3467788888888877
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 030134 94 KKDKLLKEQNNLLAKKVKEKEK 115 (182)
Q Consensus 94 kKe~~L~eeN~~L~~kl~e~~~ 115 (182)
+-...|.++...|+..+.....
T Consensus 200 e~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 200 EEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888876543
No 102
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.53 E-value=2.9e+02 Score=20.02 Aligned_cols=54 Identities=15% Similarity=0.083 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 030134 57 DLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKV 110 (182)
Q Consensus 57 ~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl 110 (182)
+++++|+..+=...+.+-..+-..-..++.+++..+.++.+.|...-+.|...+
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (116)
T cd04769 56 GFTLAELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLARLDAFE 109 (116)
T ss_pred CCCHHHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888877644433221011111124444555555555554444444444444
No 103
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.18 E-value=2.9e+02 Score=19.86 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 030134 57 DLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKV 110 (182)
Q Consensus 57 ~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl 110 (182)
++|++|+..+=.....+-..+.. -..++.+++..+.++...|...-..|..++
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 57 GMSIKDIKEYAELRREGDSTIPE-RLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred CCCHHHHHHHHHHHccCCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888887753322221111111 234555666666666555555555555444
No 104
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=22.94 E-value=3.5e+02 Score=20.66 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=19.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 030134 67 EQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKE 112 (182)
Q Consensus 67 E~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e 112 (182)
-+||+.--..|++.|.+|. ..|+.+-.|.....|-.+..+.++.+
T Consensus 49 ~kql~~vs~~l~~tKkhLs-qRId~vd~klDe~~ei~~~i~~eV~~ 93 (126)
T PF07889_consen 49 SKQLEQVSESLSSTKKHLS-QRIDRVDDKLDEQKEISKQIKDEVTE 93 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443 34444444444444444444444433
No 105
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=22.77 E-value=3.8e+02 Score=20.98 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 030134 61 KELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLL 106 (182)
Q Consensus 61 kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L 106 (182)
.|.+.||........+|+.++.+|= ++...+.--+.|...|+.+
T Consensus 1 q~~~~Le~ek~~~~~rI~~K~~~Lq--EL~~Q~va~knLv~RN~~~ 44 (142)
T PF08781_consen 1 QECEELEEEKQRRRERIKKKKEQLQ--ELILQQVAFKNLVQRNRQL 44 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 3678899999999999988886542 2222222234455555544
No 106
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=22.66 E-value=3.7e+02 Score=20.88 Aligned_cols=39 Identities=31% Similarity=0.374 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 030134 74 LKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEK 113 (182)
Q Consensus 74 L~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~ 113 (182)
|..+|+-|..+. ..+...+.|...|.--|..+...|...
T Consensus 75 L~~l~sEk~~L~-k~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 75 LDTLRSEKENLD-KELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334444444332 334455555555555555555555443
No 107
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.62 E-value=4.6e+02 Score=21.88 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhHHHHH
Q 030134 31 LEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRS 79 (182)
Q Consensus 31 ~E~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~~LE~qLe~sL~~IRs 79 (182)
.++..|.++|+..+..+-.+.|.. +-...|...|+..+..--..|-.
T Consensus 145 ~~i~~l~~ri~~~~~kl~~l~~~~--~~~~~e~ekl~~~i~~d~~~i~~ 191 (246)
T cd07597 145 NNIQRLLKRIELNKKKLESLRAKP--DVKGAEVDKLEASIIKDKESIAN 191 (246)
T ss_pred ccHHHHHHHHHHHHHHHHHhhcCC--CCchhHHHHHHHHHhccHHHHHH
Confidence 356777778887777777777764 45556888888777654444443
No 108
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=22.41 E-value=3.7e+02 Score=20.70 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 030134 80 RKNQLMLQSISELQKK 95 (182)
Q Consensus 80 rK~qlm~~qi~~LqkK 95 (182)
||.++|-+++....++
T Consensus 80 rriq~LEeele~ae~~ 95 (143)
T PF12718_consen 80 RRIQLLEEELEEAEKK 95 (143)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4444444444444443
No 109
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=22.29 E-value=6.2e+02 Score=23.27 Aligned_cols=32 Identities=13% Similarity=0.406 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 030134 58 LSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 89 (182)
Q Consensus 58 Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi 89 (182)
.+=.|..+||++|-.+..-|-++|.+..+.++
T Consensus 183 Vee~di~~lErrL~qtmdmiisKKkk~a~~~l 214 (462)
T KOG2417|consen 183 VEETDIIQLERRLAQTMDMIISKKKKMAMAQL 214 (462)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33467899999999999999999999888775
No 110
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=21.86 E-value=1.5e+02 Score=25.11 Aligned_cols=25 Identities=36% Similarity=0.364 Sum_probs=18.4
Q ss_pred HHHHHHHHHH---HHHhHHHHHHHHHHH
Q 030134 61 KELQSVEQQI---DSGLKLIRSRKNQLM 85 (182)
Q Consensus 61 kEL~~LE~qL---e~sL~~IRsrK~qlm 85 (182)
.||.+||.|+ +.+++++++.+.++.
T Consensus 15 ~~L~rle~qi~q~~~~~~~~qs~l~~~~ 42 (251)
T COG5415 15 ADLSRLESQIHQLDVALKKSQSILSQWQ 42 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888654 567888888888765
No 111
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=21.56 E-value=3.1e+02 Score=19.55 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=34.8
Q ss_pred CCCCCCCHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 030134 53 EDLADLSLKELQSVEQQID---SGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKE 112 (182)
Q Consensus 53 EdL~~Ls~kEL~~LE~qLe---~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e 112 (182)
++.+.++..|...|..+|+ .+|-++-.|.+.| .-+.+.|.+.|+.-+.++.+
T Consensus 18 ~~~~e~~~~E~~~ins~LD~Lns~LD~LE~rnD~l--------~~~L~~LLesnrq~R~e~~~ 72 (83)
T PF03670_consen 18 EEDDEFDEEEYAAINSMLDQLNSCLDHLEQRNDHL--------HAQLQELLESNRQIRLEFQE 72 (83)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777776555 4777776665444 44556688888888887755
No 112
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=21.26 E-value=3.6e+02 Score=20.13 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 030134 57 DLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKV 110 (182)
Q Consensus 57 ~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl 110 (182)
++|++|+..+=...+.+-... ..-..++..++..+.++...|...-..|..++
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (133)
T cd04787 57 GFSLKDIKEILSHADQGESPC-PMVRRLIEQRLAETERRIKELLKLRDRMQQAV 109 (133)
T ss_pred CCCHHHHHHHHhhhccCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388888887644322221111 11134566666666666666655555555444
No 113
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=20.86 E-value=2.8e+02 Score=25.03 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 030134 54 DLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKE 112 (182)
Q Consensus 54 dL~~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e 112 (182)
+|++.|++|+-.|-+. +.-+..++++|+.|...| +|..|+..+.+
T Consensus 25 ~~~~~~~~e~~aLr~E------------N~~LKkEN~~Lk~eVerL--E~e~l~s~V~E 69 (420)
T PF07407_consen 25 ELEGVSIDENFALRME------------NHSLKKENNDLKIEVERL--ENEMLRSHVCE 69 (420)
T ss_pred cccccchhhhhhHHHH------------hHHHHHHHHHHHHHHHHH--HHHhhhhhhhh
No 114
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.59 E-value=5.8e+02 Score=23.98 Aligned_cols=74 Identities=23% Similarity=0.333 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 030134 32 EYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVK 111 (182)
Q Consensus 32 E~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~ 111 (182)
++..++.++..|....+.+.-|+= .| -+....+.++++.+|...| +-+.+++..|+.....+...-..|..++.
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~-~L-~~r~~~id~~i~~av~~~~----~~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENE-RL-QKREQSIDQQIQQAVQSET----QELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HH-HHhhhhHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444433320 00 1122345566666666554 23334555555555555555555555553
No 115
>PHA01750 hypothetical protein
Probab=20.28 E-value=3e+02 Score=18.92 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=8.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q 030134 88 SISELQKKDKLLKEQNNLLAK 108 (182)
Q Consensus 88 qi~~LqkKe~~L~eeN~~L~~ 108 (182)
+|++++.|...|.++-..+++
T Consensus 50 ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 50 EIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 334444443333333333333
No 116
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.15 E-value=89 Score=29.36 Aligned_cols=30 Identities=40% Similarity=0.462 Sum_probs=24.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030134 86 LQSISELQKKDKLLKEQNNLLAKKVKEKEK 115 (182)
Q Consensus 86 ~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~ 115 (182)
+++|++|+++...|+++-..|.+++.+.+.
T Consensus 30 ~qkie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 30 LQKIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 348899999988888888888888876554
Done!