Query 030134
Match_columns 182
No_of_seqs 205 out of 1367
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 14:30:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030134.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030134hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jee_A YIIU; FTSZ, septum, coi 95.3 0.29 9.8E-06 33.9 10.0 63 58-125 3-69 (81)
2 2dgc_A Protein (GCN4); basic d 83.5 4 0.00014 26.5 6.2 38 73-114 20-57 (63)
3 2wt7_A Proto-oncogene protein 83.3 6 0.00021 25.4 7.0 39 73-115 13-51 (63)
4 1t2k_D Cyclic-AMP-dependent tr 83.1 6.3 0.00022 25.0 7.0 40 73-116 12-51 (61)
5 1dh3_A Transcription factor CR 81.9 5.7 0.0002 25.0 6.3 38 73-114 12-49 (55)
6 1ci6_A Transcription factor AT 80.5 9 0.00031 24.7 7.0 40 73-116 13-52 (63)
7 1jnm_A Proto-oncogene C-JUN; B 80.4 8.9 0.00031 24.4 7.0 40 73-116 12-51 (62)
8 2w6a_A ARF GTPase-activating p 79.7 10 0.00034 24.6 8.6 53 56-108 8-62 (63)
9 2dfs_A Myosin-5A; myosin-V, in 76.6 5.1 0.00017 39.4 7.0 25 90-114 1019-1043(1080)
10 2oqq_A Transcription factor HY 76.5 8 0.00027 23.2 5.2 26 85-110 15-40 (42)
11 2v71_A Nuclear distribution pr 73.8 27 0.00094 27.5 9.4 83 27-115 13-116 (189)
12 1dip_A Delta-sleep-inducing pe 73.2 5.5 0.00019 26.9 4.4 26 83-108 18-43 (78)
13 2yy0_A C-MYC-binding protein; 70.5 9.5 0.00033 23.9 4.9 29 83-111 22-50 (53)
14 3hnw_A Uncharacterized protein 70.2 31 0.001 25.6 9.6 48 67-114 81-130 (138)
15 1gd2_E Transcription factor PA 69.5 21 0.00073 23.5 7.1 45 71-115 17-64 (70)
16 1a93_B MAX protein, coiled coi 64.8 11 0.00039 21.6 4.0 26 79-104 6-31 (34)
17 1hjb_A Ccaat/enhancer binding 63.5 33 0.0011 23.6 7.0 41 73-117 26-66 (87)
18 3hnw_A Uncharacterized protein 58.1 54 0.0018 24.2 10.6 71 28-112 65-135 (138)
19 1gu4_A CAAT/enhancer binding p 57.6 40 0.0014 22.6 7.0 41 73-117 26-66 (78)
20 3oja_B Anopheles plasmodium-re 55.2 1.1E+02 0.0037 26.9 11.0 38 77-114 520-557 (597)
21 3nmd_A CGMP dependent protein 55.1 44 0.0015 22.3 7.9 45 63-112 21-65 (72)
22 2v71_A Nuclear distribution pr 50.5 89 0.003 24.5 10.1 35 80-114 123-157 (189)
23 3s9g_A Protein hexim1; cyclin 50.1 55 0.0019 23.2 6.3 25 86-110 64-88 (104)
24 1go4_E MAD1 (mitotic arrest de 49.5 37 0.0013 24.0 5.4 31 87-117 12-42 (100)
25 2jee_A YIIU; FTSZ, septum, coi 47.8 63 0.0021 22.0 6.3 36 80-115 13-48 (81)
26 1gk7_A Vimentin; intermediate 45.9 43 0.0015 19.5 4.9 29 83-111 9-37 (39)
27 1ytz_T Troponin T; muscle, THI 42.3 57 0.0019 23.2 5.5 32 54-85 38-69 (107)
28 3s4r_A Vimentin; alpha-helix, 42.0 66 0.0022 22.1 5.7 33 63-95 11-45 (93)
29 1m1j_C Fibrinogen gamma chain; 41.9 38 0.0013 29.7 5.4 47 1-54 25-71 (409)
30 3na7_A HP0958; flagellar bioge 41.7 1.3E+02 0.0045 23.9 11.3 38 59-96 88-127 (256)
31 2aze_A Transcription factor DP 41.4 1.1E+02 0.0039 23.1 8.0 47 59-107 3-49 (155)
32 3thf_A Protein shroom; coiled- 41.0 60 0.002 25.6 5.9 37 74-114 10-46 (190)
33 2w6b_A RHO guanine nucleotide 40.6 67 0.0023 20.2 5.3 33 84-116 7-39 (56)
34 1j1d_C Troponin I, TNI; THIN f 39.9 1.1E+02 0.0038 22.6 8.6 33 53-85 53-85 (133)
35 3m9b_A Proteasome-associated A 37.4 50 0.0017 27.1 5.1 23 82-104 70-92 (251)
36 3o0z_A RHO-associated protein 36.9 1.4E+02 0.0049 22.9 9.9 37 81-117 98-134 (168)
37 3anw_B GINS23, putative unchar 36.9 68 0.0023 24.7 5.6 49 33-82 82-132 (171)
38 1am9_A Srebp-1A, protein (ster 36.1 71 0.0024 21.2 5.0 28 87-114 50-77 (82)
39 1e52_A Excinuclease ABC subuni 35.2 32 0.0011 22.2 2.9 42 54-95 13-58 (63)
40 2zxx_A Geminin; coiled-coil, c 34.3 66 0.0023 21.8 4.5 33 82-114 36-68 (79)
41 3q4f_C DNA repair protein XRCC 34.0 44 0.0015 26.2 4.0 24 86-109 160-183 (186)
42 1uii_A Geminin; human, DNA rep 32.1 1.2E+02 0.0041 20.7 5.6 29 82-110 48-76 (83)
43 1g6u_A Domain swapped dimer; d 31.6 83 0.0028 18.6 6.9 36 35-80 4-39 (48)
44 1j1e_C Troponin I, TNI; THIN f 31.5 1.8E+02 0.0062 22.5 7.6 32 54-85 54-85 (180)
45 1ci6_A Transcription factor AT 31.1 1E+02 0.0035 19.5 5.8 32 81-112 31-62 (63)
46 3s4r_A Vimentin; alpha-helix, 30.1 1.3E+02 0.0045 20.5 9.1 32 82-113 51-82 (93)
47 3ghg_A Fibrinogen alpha chain; 30.1 1.1E+02 0.0038 27.8 6.5 14 32-45 65-78 (562)
48 2l5g_A GPS2 protein, G protein 29.3 66 0.0023 18.7 3.3 20 87-106 15-34 (38)
49 3gp4_A Transcriptional regulat 28.6 1.7E+02 0.0057 21.2 9.1 58 57-115 59-116 (142)
50 3p57_A Myocyte-specific enhanc 28.5 16 0.00054 25.4 0.6 13 1-13 61-73 (90)
51 2v66_B Nuclear distribution pr 28.2 1.6E+02 0.0056 21.0 9.8 28 88-115 36-63 (111)
52 2aze_B Transcription factor E2 28.1 1.1E+02 0.0036 21.6 5.0 36 80-115 6-41 (106)
53 1t2k_D Cyclic-AMP-dependent tr 27.8 1.1E+02 0.0038 18.9 5.4 29 82-110 31-59 (61)
54 3m48_A General control protein 27.4 80 0.0027 17.8 3.3 25 90-114 3-27 (33)
55 3qh9_A Liprin-beta-2; coiled-c 26.5 1.5E+02 0.0052 20.0 6.9 38 78-115 17-54 (81)
56 2oxj_A Hybrid alpha/beta pepti 26.4 95 0.0032 17.6 4.0 26 89-114 3-28 (34)
57 1nkp_B MAX protein, MYC proto- 25.5 1.3E+02 0.0045 19.7 4.9 22 89-110 56-77 (83)
58 1wlq_A Geminin; coiled-coil; 2 25.3 1.5E+02 0.005 20.2 5.0 31 82-112 40-70 (83)
59 2k48_A Nucleoprotein; viral pr 25.1 1.9E+02 0.0064 20.6 7.3 23 62-84 43-65 (107)
60 1p9i_A Cortexillin I/GCN4 hybr 25.1 88 0.003 16.9 3.1 18 96-113 8-25 (31)
61 1nlw_A MAD protein, MAX dimeri 25.0 1.4E+02 0.0049 19.7 5.0 25 88-112 48-72 (80)
62 3w03_C DNA repair protein XRCC 24.9 1.5E+02 0.0052 23.0 5.8 29 84-112 149-177 (184)
63 2oa5_A Hypothetical protein BQ 24.1 46 0.0016 23.9 2.4 24 89-112 10-33 (110)
64 1nkp_A C-MYC, MYC proto-oncoge 23.2 1.7E+02 0.006 19.6 5.2 17 97-113 69-85 (88)
65 3gpv_A Transcriptional regulat 22.9 2.2E+02 0.0075 20.6 8.3 56 57-113 73-128 (148)
66 2dfs_A Myosin-5A; myosin-V, in 22.8 4.6E+02 0.016 25.6 9.9 11 35-45 925-935 (1080)
67 2xus_A Breast cancer metastasi 22.1 1.4E+02 0.0049 18.2 5.6 18 80-97 25-42 (49)
68 1t6f_A Geminin; coiled-coil, c 22.1 1.2E+02 0.0042 17.4 4.4 26 82-107 9-34 (37)
69 3na7_A HP0958; flagellar bioge 20.8 3.1E+02 0.011 21.6 7.9 8 88-95 98-105 (256)
70 2wvr_A Geminin; DNA replicatio 20.4 1.9E+02 0.0066 22.9 5.6 33 82-114 117-149 (209)
No 1
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.26 E-value=0.29 Score=33.87 Aligned_cols=63 Identities=22% Similarity=0.375 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHhHHhhhhh
Q 030134 58 LSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVK----EKEKLLSQEAQCRE 125 (182)
Q Consensus 58 Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~----e~~~~~~~~~~w~~ 125 (182)
+|++=|.+||..++.|+..| .+|.-+|++|+.|-..|..+|..++..-. ++..-...+..|..
T Consensus 3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 69 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999876 56667888888888888888887655322 22333334556764
No 2
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=83.52 E-value=4 Score=26.46 Aligned_cols=38 Identities=29% Similarity=0.289 Sum_probs=31.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 73 GLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 73 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
|-.+.|.||.+.+ .+|..+...|..+|..|...+....
T Consensus 20 AArrsR~RK~~~~----~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 20 AARRSRARKLQRM----KQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888887655 7899999999999999999886654
No 3
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=83.27 E-value=6 Score=25.41 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=31.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030134 73 GLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEK 115 (182)
Q Consensus 73 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~ 115 (182)
|-.+-|.||.+.+ .+|..+...|..+|..|...|.....
T Consensus 13 AA~rcR~rKk~~~----~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 13 AAAKCRNRRRELT----DTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456688887665 78999999999999999999977554
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=83.08 E-value=6.3 Score=25.05 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=32.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 030134 73 GLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKL 116 (182)
Q Consensus 73 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~~ 116 (182)
|-.+-|.||.+.+ ..|..+...|..+|..|..+|......
T Consensus 12 AA~k~R~rKk~~~----~~Le~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 12 AASRSRQKRKVWV----QSLEKKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556688887655 789999999999999999999876543
No 5
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=81.93 E-value=5.7 Score=25.00 Aligned_cols=38 Identities=21% Similarity=0.367 Sum_probs=29.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 73 GLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 73 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
|-.+-|.||...+ .+|..+...|..+|..|..++....
T Consensus 12 sA~rSR~RKk~~~----~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 12 AARESRRKKKEYV----KSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677776544 7889999999999999999987654
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=80.46 E-value=9 Score=24.67 Aligned_cols=40 Identities=20% Similarity=0.187 Sum_probs=31.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 030134 73 GLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKL 116 (182)
Q Consensus 73 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~~ 116 (182)
|-.+-|.+|-+- +..|..+...|..+|..|..+|......
T Consensus 13 AA~R~R~KKk~~----~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 13 AATRYRQKKRAE----QEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777544 4788889999999999999999876654
No 7
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=80.44 E-value=8.9 Score=24.43 Aligned_cols=40 Identities=30% Similarity=0.277 Sum_probs=32.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 030134 73 GLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKL 116 (182)
Q Consensus 73 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~~ 116 (182)
|-.+-|.||.+.+ .+|..+...|..+|..|..++......
T Consensus 12 AA~k~R~rKk~~~----~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 12 AASKSRKRKLERI----ARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788887665 799999999999999999999776543
No 8
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=79.72 E-value=10 Score=24.56 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 030134 56 ADLSLKELQSVEQQIDSGLKLIRS--RKNQLMLQSISELQKKDKLLKEQNNLLAK 108 (182)
Q Consensus 56 ~~Ls~kEL~~LE~qLe~sL~~IRs--rK~qlm~~qi~~LqkKe~~L~eeN~~L~~ 108 (182)
++.++.|-..+-+-|-+|=.+|-. +=+.-|.+++.-|++|...|+-+|..|+.
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 467888888888777777666642 23445678888899999999999988873
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=76.56 E-value=5.1 Score=39.36 Aligned_cols=25 Identities=36% Similarity=0.351 Sum_probs=21.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 90 SELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 90 ~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
++|+.|...|.++|..|+.++.+.+
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888889999999999888766
No 10
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=76.47 E-value=8 Score=23.22 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 030134 85 MLQSISELQKKDKLLKEQNNLLAKKV 110 (182)
Q Consensus 85 m~~qi~~LqkKe~~L~eeN~~L~~kl 110 (182)
|.....+|..|...|+.||..|++.+
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 44456777778888888888888766
No 11
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=73.79 E-value=27 Score=27.45 Aligned_cols=83 Identities=19% Similarity=0.204 Sum_probs=43.4
Q ss_pred cchHHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHH-HHHHHHHHHhHHHHHHHHHH--HHH----------------
Q 030134 27 GNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQ-SVEQQIDSGLKLIRSRKNQL--MLQ---------------- 87 (182)
Q Consensus 27 ~~~~~E~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~-~LE~qLe~sL~~IRsrK~ql--m~~---------------- 87 (182)
.+|...+..++.+++.++...--|.. +-+||. .||.+|+.+=+++|.-+.++ +..
T Consensus 13 ~ywk~~~~~~~q~~~~le~El~EFqe------sSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~ 86 (189)
T 2v71_A 13 AYWKELSMKYKQSFQEARDELVEFQE------GSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQS 86 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777666666666666544332221 122221 34444444444444332221 112
Q ss_pred --HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030134 88 --SISELQKKDKLLKEQNNLLAKKVKEKEK 115 (182)
Q Consensus 88 --qi~~LqkKe~~L~eeN~~L~~kl~e~~~ 115 (182)
+|..|++....|.+.+..|..+|.+.+.
T Consensus 87 ~~~~~~Lq~el~~l~~~~~~l~~~ireLEq 116 (189)
T 2v71_A 87 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2666666666777777778777766543
No 12
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=73.16 E-value=5.5 Score=26.92 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Q 030134 83 QLMLQSISELQKKDKLLKEQNNLLAK 108 (182)
Q Consensus 83 qlm~~qi~~LqkKe~~L~eeN~~L~~ 108 (182)
+++.++|.+|..|...|..||..|+.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777776667777766654
No 13
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=70.47 E-value=9.5 Score=23.87 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 030134 83 QLMLQSISELQKKDKLLKEQNNLLAKKVK 111 (182)
Q Consensus 83 qlm~~qi~~LqkKe~~L~eeN~~L~~kl~ 111 (182)
..|..++.+|+.|...|.+++..|+.++.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556777888888888888888887764
No 14
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=70.24 E-value=31 Score=25.62 Aligned_cols=48 Identities=25% Similarity=0.187 Sum_probs=22.5
Q ss_pred HHHHHHHhHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 67 EQQIDSGLKLIRSRKNQLML--QSISELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 67 E~qLe~sL~~IRsrK~qlm~--~qi~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
+.+++.--+.|=+=|.++.. ..++.+.++...|.+++..|.+++...+
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444432 2334455555555566666666555544
No 15
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=69.47 E-value=21 Score=23.54 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=30.9
Q ss_pred HHHhHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030134 71 DSGLKLIRSRKNQLM---LQSISELQKKDKLLKEQNNLLAKKVKEKEK 115 (182)
Q Consensus 71 e~sL~~IRsrK~qlm---~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~ 115 (182)
-.|=+..|.||.+-| ..++..|......|..+|..|+..+.....
T Consensus 17 R~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 17 RAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667888888765 345666666666677888888887766543
No 16
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=64.81 E-value=11 Score=21.56 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 030134 79 SRKNQLMLQSISELQKKDKLLKEQNN 104 (182)
Q Consensus 79 srK~qlm~~qi~~LqkKe~~L~eeN~ 104 (182)
.||++-....|++|+++...|.++-+
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 36777777788887777666655543
No 17
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=63.49 E-value=33 Score=23.57 Aligned_cols=41 Identities=27% Similarity=0.243 Sum_probs=29.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 030134 73 GLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLL 117 (182)
Q Consensus 73 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~~~ 117 (182)
|.++=|.++.+-- .++..+...|..+|..|+.+|.......
T Consensus 26 AarrSR~krk~r~----~e~~~r~~~Le~EN~~Lr~~v~~L~~E~ 66 (87)
T 1hjb_A 26 AVRKSRDKAKMRN----LETQHKVLELTAENERLQKKVEQLSREL 66 (87)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544333 5677788889999999999998876654
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=58.09 E-value=54 Score=24.24 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 030134 28 NWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLA 107 (182)
Q Consensus 28 ~~~~E~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~ 107 (182)
+...|+-+++.+++.|+.....+ -+|+..|=+.|..+-.+ ..-...++.+|+++...|++++..|.
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~---------~kE~~~lK~el~~~~~k-----~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENK---------DKEIYDLKHELIAAQIK-----AESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777776544433 44555554444443332 33345567777888888888888877
Q ss_pred HHHHH
Q 030134 108 KKVKE 112 (182)
Q Consensus 108 ~kl~e 112 (182)
.++.+
T Consensus 131 ~~~~~ 135 (138)
T 3hnw_A 131 TELND 135 (138)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77654
No 19
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=57.65 E-value=40 Score=22.63 Aligned_cols=41 Identities=27% Similarity=0.243 Sum_probs=29.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 030134 73 GLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLL 117 (182)
Q Consensus 73 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~~~ 117 (182)
|.++-|.++-+-- .++..+...|..+|..|+.+|.......
T Consensus 26 AakrSR~krk~r~----~e~~~r~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 26 AVRKSRDKAKMRN----LETQHKVLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554433 5677888899999999999998776543
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=55.17 E-value=1.1e+02 Score=26.87 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 77 IRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 77 IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
.+.++.+.+.+++++.+++.+.+.++...+++++.+..
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~ 557 (597)
T 3oja_B 520 FKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKR 557 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhh
Confidence 34455555666666666666666666666666665543
No 21
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=55.10 E-value=44 Score=22.27 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 030134 63 LQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKE 112 (182)
Q Consensus 63 L~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e 112 (182)
+..|+..|......||.+... |.+|.+......++...|+.++..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~-----I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDAL-----IDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888876543 566666666666666677776643
No 22
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=50.47 E-value=89 Score=24.47 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 80 RKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 80 rK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
|+......++.++..|-....|.|..|...|.+..
T Consensus 123 r~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe 157 (189)
T 2v71_A 123 RAKRATIMSLEDFEQRLNQAIERNAFLESELDEKE 157 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666778888888888888888888887754
No 23
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=50.11 E-value=55 Score=23.17 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=19.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 030134 86 LQSISELQKKDKLLKEQNNLLAKKV 110 (182)
Q Consensus 86 ~~qi~~LqkKe~~L~eeN~~L~~kl 110 (182)
-.+|.+|..+...|..+|..|+..-
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888887643
No 24
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=49.48 E-value=37 Score=24.03 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=26.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 030134 87 QSISELQKKDKLLKEQNNLLAKKVKEKEKLL 117 (182)
Q Consensus 87 ~qi~~LqkKe~~L~eeN~~L~~kl~e~~~~~ 117 (182)
+++..|+++...|..+|..|++.+...+...
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999998876554
No 25
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=47.84 E-value=63 Score=21.96 Aligned_cols=36 Identities=33% Similarity=0.400 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030134 80 RKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEK 115 (182)
Q Consensus 80 rK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~ 115 (182)
.|-+-+.+.|.-|+-....|.++|..|.....+...
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467778889999999999999999999988877544
No 26
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=45.94 E-value=43 Score=19.50 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 030134 83 QLMLQSISELQKKDKLLKEQNNLLAKKVK 111 (182)
Q Consensus 83 qlm~~qi~~LqkKe~~L~eeN~~L~~kl~ 111 (182)
+-+.+.+...-.|++.|..+|+.|..+|.
T Consensus 9 q~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 9 QELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666788999999999988873
No 27
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=42.28 E-value=57 Score=23.23 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=26.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 030134 54 DLADLSLKELQSVEQQIDSGLKLIRSRKNQLM 85 (182)
Q Consensus 54 dL~~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm 85 (182)
+|++|+.++|+.+=++|-.-+..+=+-|..+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE 69 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEKYDFA 69 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 89999999999998888888877776665543
No 28
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=42.00 E-value=66 Score=22.11 Aligned_cols=33 Identities=18% Similarity=0.444 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHh
Q 030134 63 LQSVEQQIDSGLKLIRS--RKNQLMLQSISELQKK 95 (182)
Q Consensus 63 L~~LE~qLe~sL~~IRs--rK~qlm~~qi~~LqkK 95 (182)
|+.|-..|-.=|.+||. .-+..|..+|..++.+
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455555555555552 2333444444444433
No 29
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=41.87 E-value=38 Score=29.67 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=26.1
Q ss_pred ChHHHHHHhhhhhhhhhhccCCCCCccchHHHHHHHHHHHHHHHHHhcccCCCC
Q 030134 1 MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGED 54 (182)
Q Consensus 1 M~~iLeRY~~~s~~~~~~~~~~~e~~~~~~~E~~~Lk~~ie~Lq~~~R~l~GEd 54 (182)
++++|-+|++-....- . . -+..-.+++.++..+..|-+.+.....++
T Consensus 25 i~d~L~k~e~~V~~~l--~--~---LE~~l~elsn~ts~v~~Lvk~iq~~~~~~ 71 (409)
T 1m1j_C 25 IADFFNKYRLTTDGEL--L--E---IEGLLQQATNSTGSIEYLIQHIKTIYPSE 71 (409)
T ss_dssp HHHHHHHHHHHHHHHH--H--H---HHHHHHHHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHhcchhHH--H--H---HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3578888887543311 1 0 02334566666666666666655555554
No 30
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=41.69 E-value=1.3e+02 Score=23.91 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHhH
Q 030134 59 SLKELQSVEQQIDSGLKLIRSRKNQLM--LQSISELQKKD 96 (182)
Q Consensus 59 s~kEL~~LE~qLe~sL~~IRsrK~qlm--~~qi~~LqkKe 96 (182)
+.+|+..|.+.++.+=++|...-.+++ ++.++.++...
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l 127 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQ 127 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888877777766555543 45554444433
No 31
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=41.43 E-value=1.1e+02 Score=23.14 Aligned_cols=47 Identities=23% Similarity=0.186 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 030134 59 SLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLA 107 (182)
Q Consensus 59 s~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~ 107 (182)
|..|.+.||..-..-+.+|+.+|.+|= ++...+.--+.|.+.|+.+.
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~Lq--eL~~Q~vafknLv~RN~~~e 49 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQLQ--ELILQQIAFKNLVQRNRHAE 49 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 678899999998888889987776542 22222223345555555543
No 32
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=40.96 E-value=60 Score=25.55 Aligned_cols=37 Identities=19% Similarity=0.395 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 74 LKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 74 L~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
-..|..+|.+|+ ..|++|...|.++-..|...+..+.
T Consensus 10 ~~~i~~Kk~ELi----~~L~~kL~~L~~eqe~l~ee~~~N~ 46 (190)
T 3thf_A 10 TNLIKQKMDELI----KHLNQKIVSLKREQQTISEECSAND 46 (190)
T ss_dssp CCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999887 7899999999999999988887654
No 33
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=40.64 E-value=67 Score=20.25 Aligned_cols=33 Identities=15% Similarity=0.381 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 030134 84 LMLQSISELQKKDKLLKEQNNLLAKKVKEKEKL 116 (182)
Q Consensus 84 lm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~~ 116 (182)
-+.+.+-.|+.....|..+|+.|.+-+++..++
T Consensus 7 SlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkA 39 (56)
T 2w6b_A 7 SLVDTVYALKDEVQELRQDNKKMKKSLEEEQRA 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888888888999988888775543
No 34
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=39.86 E-value=1.1e+02 Score=22.56 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=27.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 030134 53 EDLADLSLKELQSVEQQIDSGLKLIRSRKNQLM 85 (182)
Q Consensus 53 EdL~~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm 85 (182)
-++++||.++|+.+=+.|-..+..+=+-|..+-
T Consensus 53 L~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE 85 (133)
T 1j1d_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (133)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 378999999999999999888888777776554
No 35
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=37.37 E-value=50 Score=27.11 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 030134 82 NQLMLQSISELQKKDKLLKEQNN 104 (182)
Q Consensus 82 ~qlm~~qi~~LqkKe~~L~eeN~ 104 (182)
++.|.+.+..++++...|.+++.
T Consensus 70 Ne~L~~~Lk~ar~El~~LkeEle 92 (251)
T 3m9b_A 70 NSKLMETLKEARQQLLALREEVD 92 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 36
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=36.87 E-value=1.4e+02 Score=22.90 Aligned_cols=37 Identities=8% Similarity=0.105 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 030134 81 KNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLL 117 (182)
Q Consensus 81 K~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~~~ 117 (182)
|.+-+..++..++.++..+..+|+.|..+|...++..
T Consensus 98 ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~ 134 (168)
T 3o0z_A 98 RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEK 134 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888888899999999999999998776643
No 37
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=36.86 E-value=68 Score=24.74 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCC--HHHHHHHHHHHHHHhHHHHHHHH
Q 030134 33 YSKLKARMEVLQRNQKHFMGEDLADLS--LKELQSVEQQIDSGLKLIRSRKN 82 (182)
Q Consensus 33 ~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls--~kEL~~LE~qLe~sL~~IRsrK~ 82 (182)
|.+.+.-+..|+...|.-.+.|++.+. +++|..+.+.+. .|..+|-+|-
T Consensus 82 Y~rvr~yI~~Le~ei~~~~~~d~~~~~~kl~elk~~~~~l~-~L~~~Ri~KI 132 (171)
T 3anw_B 82 YERAEFYAYYLENYVRLNPRESVDTINVKLTKLANLRKKLR-DLKLIRFNKI 132 (171)
T ss_dssp HHHHHHHHHHHHHHTTCCC-------CCHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 777888899999999999988877733 468877776665 4667777774
No 38
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=36.11 E-value=71 Score=21.20 Aligned_cols=28 Identities=29% Similarity=0.321 Sum_probs=21.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 87 QSISELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 87 ~qi~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
+-|..|+.....|.+++..|+..+.+..
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456777888889999999988886644
No 39
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=35.18 E-value=32 Score=22.23 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=30.1
Q ss_pred CCCCCCHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 030134 54 DLADLSLK----ELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKK 95 (182)
Q Consensus 54 dL~~Ls~k----EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkK 95 (182)
+...++.+ -+..|+.++..|.....--+-..+.++|..|+++
T Consensus 13 ~~~~ls~~~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 13 VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp SSCCSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 44555533 3667888888888888878888888888887765
No 40
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=34.28 E-value=66 Score=21.76 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 82 NQLMLQSISELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 82 ~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
+..++.+|+.++.....|.++|..|..-..+..
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888777888899988877665543
No 41
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=33.98 E-value=44 Score=26.21 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=20.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 030134 86 LQSISELQKKDKLLKEQNNLLAKK 109 (182)
Q Consensus 86 ~~qi~~LqkKe~~L~eeN~~L~~k 109 (182)
++.|.+|+.+...|+++|..|...
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999998764
No 42
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=32.08 E-value=1.2e+02 Score=20.66 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 030134 82 NQLMLQSISELQKKDKLLKEQNNLLAKKV 110 (182)
Q Consensus 82 ~qlm~~qi~~LqkKe~~L~eeN~~L~~kl 110 (182)
+.-|.++|..|+.....|.++|..|+.-.
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555554443
No 43
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=31.58 E-value=83 Score=18.62 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhHHHHHH
Q 030134 35 KLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSR 80 (182)
Q Consensus 35 ~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~~LE~qLe~sL~~IRsr 80 (182)
.|+.++..|.+ +++|.+||-.||..|+.--+++-.-
T Consensus 4 alkselqalkk----------egfspeelaaleselqalekklaal 39 (48)
T 1g6u_A 4 ALKSELQALKK----------EGFSPEELAALESELQALEKKLAAL 39 (48)
T ss_dssp HHHHHHHHHHH----------TTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45556655554 4689999999998876544444333
No 44
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=31.48 E-value=1.8e+02 Score=22.53 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=27.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 030134 54 DLADLSLKELQSVEQQIDSGLKLIRSRKNQLM 85 (182)
Q Consensus 54 dL~~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm 85 (182)
+|++|+..+|+.+=+.|-..+..+=+-|..+-
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~LEeEKYDlE 85 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 88889999999999999999888887777654
No 45
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=31.06 E-value=1e+02 Score=19.47 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 030134 81 KNQLMLQSISELQKKDKLLKEQNNLLAKKVKE 112 (182)
Q Consensus 81 K~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e 112 (182)
+.+-|..+..+|+.+...|..++..|+.-|.+
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555666677777777777777766543
No 46
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=30.10 E-value=1.3e+02 Score=20.50 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 030134 82 NQLMLQSISELQKKDKLLKEQNNLLAKKVKEK 113 (182)
Q Consensus 82 ~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~ 113 (182)
..++...|.+|+++...+.-+|..|...+...
T Consensus 51 ~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 51 GDLYEEEMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999988887654
No 47
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.09 E-value=1.1e+02 Score=27.84 Aligned_cols=14 Identities=29% Similarity=0.309 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 030134 32 EYSKLKARMEVLQR 45 (182)
Q Consensus 32 E~~~Lk~~ie~Lq~ 45 (182)
-+.+||++++.+++
T Consensus 65 rINELKnqLEdlsK 78 (562)
T 3ghg_A 65 RINKLKNSLFEYQK 78 (562)
T ss_dssp HHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34455555554443
No 48
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=29.26 E-value=66 Score=18.69 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=12.0
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 030134 87 QSISELQKKDKLLKEQNNLL 106 (182)
Q Consensus 87 ~qi~~LqkKe~~L~eeN~~L 106 (182)
++|..|+.|...|.++.-.|
T Consensus 15 eQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666665444
No 49
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=28.57 E-value=1.7e+02 Score=21.19 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030134 57 DLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEK 115 (182)
Q Consensus 57 ~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~ 115 (182)
++|++|+..+=...+.+-..+..+ .+++.+++..+.++...|...-..|..++...+.
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~~-~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEAR-AELLKKQRIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888887755544433223222 4577788888888888888888888888766443
No 50
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=28.52 E-value=16 Score=25.41 Aligned_cols=13 Identities=31% Similarity=0.721 Sum_probs=10.8
Q ss_pred ChHHHHHHhhhhh
Q 030134 1 MERILERYERYCY 13 (182)
Q Consensus 1 M~~iLeRY~~~s~ 13 (182)
|.+||+||++++.
T Consensus 61 ~~~il~rY~~~~~ 73 (90)
T 3p57_A 61 MDKVLLKYTEYNE 73 (90)
T ss_dssp HHHHHHHHHHCCS
T ss_pred HHHHHHHHHhcCc
Confidence 5789999999763
No 51
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=28.16 E-value=1.6e+02 Score=20.96 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=19.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030134 88 SISELQKKDKLLKEQNNLLAKKVKEKEK 115 (182)
Q Consensus 88 qi~~LqkKe~~L~eeN~~L~~kl~e~~~ 115 (182)
.|..|++....|...|..|..+|.+.+.
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777766543
No 52
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=28.08 E-value=1.1e+02 Score=21.60 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030134 80 RKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEK 115 (182)
Q Consensus 80 rK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~ 115 (182)
.|.+.+..+|+.|..+|+.|-+.-..+...|.....
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677889999999999999988888888877653
No 53
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=27.84 E-value=1.1e+02 Score=18.93 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 030134 82 NQLMLQSISELQKKDKLLKEQNNLLAKKV 110 (182)
Q Consensus 82 ~qlm~~qi~~LqkKe~~L~eeN~~L~~kl 110 (182)
...|..+...|+.+...|.+++..|+..|
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555666666667777777766554
No 54
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=27.41 E-value=80 Score=17.82 Aligned_cols=25 Identities=24% Similarity=0.217 Sum_probs=17.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 90 SELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 90 ~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
+.|..|...|..+|..|...+....
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3466677778888888877775543
No 55
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=26.51 E-value=1.5e+02 Score=20.04 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030134 78 RSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEK 115 (182)
Q Consensus 78 RsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~ 115 (182)
|-+|++=+..+|.+|+-|...+..+-..-.+||.....
T Consensus 17 ~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~ 54 (81)
T 3qh9_A 17 KQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKA 54 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 44788888899999999988888888888888876543
No 56
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.38 E-value=95 Score=17.61 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=17.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 89 ISELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 89 i~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
++.|..|...|..+|..|...+....
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 35566677777777777777665443
No 57
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=25.51 E-value=1.3e+02 Score=19.67 Aligned_cols=22 Identities=36% Similarity=0.314 Sum_probs=11.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q 030134 89 ISELQKKDKLLKEQNNLLAKKV 110 (182)
Q Consensus 89 i~~LqkKe~~L~eeN~~L~~kl 110 (182)
+..|+.....|..+|..|..+|
T Consensus 56 ~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 56 NHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555
No 58
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=25.34 E-value=1.5e+02 Score=20.22 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 030134 82 NQLMLQSISELQKKDKLLKEQNNLLAKKVKE 112 (182)
Q Consensus 82 ~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e 112 (182)
+..|.+.|+.++.....|.++|..|+.-...
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777888888887765544
No 59
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=25.13 E-value=1.9e+02 Score=20.59 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 030134 62 ELQSVEQQIDSGLKLIRSRKNQL 84 (182)
Q Consensus 62 EL~~LE~qLe~sL~~IRsrK~ql 84 (182)
|+...|.||..|-.+++.-..+.
T Consensus 43 Ei~~~E~QL~iArQKLkdAe~~~ 65 (107)
T 2k48_A 43 NITAHEQQLVTARQKLKDAEKAV 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566788888887777665544
No 60
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=25.08 E-value=88 Score=16.91 Aligned_cols=18 Identities=33% Similarity=0.296 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030134 96 DKLLKEQNNLLAKKVKEK 113 (182)
Q Consensus 96 e~~L~eeN~~L~~kl~e~ 113 (182)
...|.-+|+.|+.|++|.
T Consensus 8 lasleaenkqlkakveel 25 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456888999999998875
No 61
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=24.96 E-value=1.4e+02 Score=19.69 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=13.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 030134 88 SISELQKKDKLLKEQNNLLAKKVKE 112 (182)
Q Consensus 88 qi~~LqkKe~~L~eeN~~L~~kl~e 112 (182)
-|..|+.++..+..++..|+.+..+
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~~ 72 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQRH 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444
No 62
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=24.89 E-value=1.5e+02 Score=23.03 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 030134 84 LMLQSISELQKKDKLLKEQNNLLAKKVKE 112 (182)
Q Consensus 84 lm~~qi~~LqkKe~~L~eeN~~L~~kl~e 112 (182)
.+++.+.+|+.+...|+++|..|+.....
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999999999887654
No 63
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=24.12 E-value=46 Score=23.95 Aligned_cols=24 Identities=38% Similarity=0.410 Sum_probs=19.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q 030134 89 ISELQKKDKLLKEQNNLLAKKVKE 112 (182)
Q Consensus 89 i~~LqkKe~~L~eeN~~L~~kl~e 112 (182)
+++|..+...|+=||+.|+++|..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467778888899999999999964
No 64
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.15 E-value=1.7e+02 Score=19.55 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030134 97 KLLKEQNNLLAKKVKEK 113 (182)
Q Consensus 97 ~~L~eeN~~L~~kl~e~ 113 (182)
..|..+|..|..+|.+.
T Consensus 69 ~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 69 DLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34666777777776543
No 65
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.91 E-value=2.2e+02 Score=20.61 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 030134 57 DLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEK 113 (182)
Q Consensus 57 ~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~ 113 (182)
++|++|+..+=...+.+-..+.. -.+++.+++..+.++...|...-..|..++...
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTILH-RLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHhhhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888887775543333222222 235677778888888887777777777777543
No 66
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=22.75 E-value=4.6e+02 Score=25.61 Aligned_cols=11 Identities=36% Similarity=0.513 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 030134 35 KLKARMEVLQR 45 (182)
Q Consensus 35 ~Lk~~ie~Lq~ 45 (182)
+|..+++.|+.
T Consensus 925 ~LE~kl~eLq~ 935 (1080)
T 2dfs_A 925 GLENKIMQLQR 935 (1080)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 67
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=22.14 E-value=1.4e+02 Score=18.23 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 030134 80 RKNQLMLQSISELQKKDK 97 (182)
Q Consensus 80 rK~qlm~~qi~~LqkKe~ 97 (182)
=|.|+..+.|..++++..
T Consensus 25 LkEqlY~ERl~ql~~~Le 42 (49)
T 2xus_A 25 LKEKLFRERLSQLRLRLE 42 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355566666655555543
No 68
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=22.11 E-value=1.2e+02 Score=17.39 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 030134 82 NQLMLQSISELQKKDKLLKEQNNLLA 107 (182)
Q Consensus 82 ~qlm~~qi~~LqkKe~~L~eeN~~L~ 107 (182)
+..++..|+.-......|.++|..|.
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33444455544445555666665553
No 69
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=20.79 E-value=3.1e+02 Score=21.60 Aligned_cols=8 Identities=0% Similarity=-0.018 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 030134 88 SISELQKK 95 (182)
Q Consensus 88 qi~~LqkK 95 (182)
+|..++++
T Consensus 98 Eie~~~~~ 105 (256)
T 3na7_A 98 EEDIAKER 105 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 70
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.40 E-value=1.9e+02 Score=22.90 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134 82 NQLMLQSISELQKKDKLLKEQNNLLAKKVKEKE 114 (182)
Q Consensus 82 ~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~ 114 (182)
++-|.++|+.++.....|.++|..|+.-+....
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777788888888888888888877665543
Done!