Query 030134
Match_columns 182
No_of_seqs 205 out of 1367
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 14:30:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030134.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030134hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r8ea1 a.6.1.3 (A:3-120) Tran 34.6 53 0.0038 21.1 6.5 10 57-66 61-70 (118)
2 d1e52a_ a.2.9.1 (A:) C-termina 33.1 20 0.0015 21.1 3.2 35 62-96 18-52 (56)
3 d1nkpb_ a.38.1.1 (B:) Max prot 31.4 52 0.0038 20.0 5.8 21 90-110 57-77 (83)
4 d1uklc_ a.38.1.1 (C:) SREBP-2 29.1 40 0.0029 19.6 4.2 24 87-110 33-56 (61)
5 d1am9a_ a.38.1.1 (A:) SREBP-1a 27.6 57 0.0042 19.8 5.0 33 81-113 41-76 (80)
6 d2azeb1 e.63.1.2 (B:201-301) T 27.2 75 0.0055 20.5 6.2 34 82-115 3-36 (101)
7 d2azea1 e.63.1.1 (A:199-346) T 21.7 1.2E+02 0.0089 21.0 7.7 24 61-84 2-25 (148)
8 d1nlwa_ a.38.1.1 (A:) Mad prot 20.7 68 0.0049 19.2 4.3 19 92-110 59-77 (79)
9 d1t27a_ d.129.3.4 (A:) Phoshat 17.9 51 0.0037 25.3 3.8 39 41-79 219-259 (269)
10 d3d19a2 a.29.13.1 (A:145-274) 17.4 1.4E+02 0.0099 19.8 7.4 62 28-89 35-96 (130)
No 1
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=34.60 E-value=53 Score=21.05 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=6.0
Q ss_pred CCCHHHHHHH
Q 030134 57 DLSLKELQSV 66 (182)
Q Consensus 57 ~Ls~kEL~~L 66 (182)
++|++|+..+
T Consensus 61 g~sl~eIk~~ 70 (118)
T d1r8ea1 61 GTPLEEMKKA 70 (118)
T ss_dssp TCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 3667666554
No 2
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=33.08 E-value=20 Score=21.10 Aligned_cols=35 Identities=6% Similarity=0.093 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhH
Q 030134 62 ELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 96 (182)
Q Consensus 62 EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe 96 (182)
.+..||.++..+.....--|.-.+.|+|..|++..
T Consensus 18 ~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~l 52 (56)
T d1e52a_ 18 KIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 52 (56)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 37788888888888888888888888888887653
No 3
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.35 E-value=52 Score=20.00 Aligned_cols=21 Identities=38% Similarity=0.373 Sum_probs=9.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHH
Q 030134 90 SELQKKDKLLKEQNNLLAKKV 110 (182)
Q Consensus 90 ~~LqkKe~~L~eeN~~L~~kl 110 (182)
..|......|..+|..|..+|
T Consensus 57 ~~l~~~~~~l~~~~~~L~~~l 77 (83)
T d1nkpb_ 57 HTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344445555555544
No 4
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.09 E-value=40 Score=19.58 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=16.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q 030134 87 QSISELQKKDKLLKEQNNLLAKKV 110 (182)
Q Consensus 87 ~qi~~LqkKe~~L~eeN~~L~~kl 110 (182)
+-|..|+++...|.+++..|+...
T Consensus 33 ~YI~~Lq~~~~~L~~e~~~L~~~~ 56 (61)
T d1uklc_ 33 DYIKYLQQVNHKLRQENMVLKLAN 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777888887776654
No 5
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.60 E-value=57 Score=19.76 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=21.5
Q ss_pred HHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 030134 81 KNQLML---QSISELQKKDKLLKEQNNLLAKKVKEK 113 (182)
Q Consensus 81 K~qlm~---~qi~~LqkKe~~L~eeN~~L~~kl~e~ 113 (182)
|..+|. +-|..|+++...|.++|..|+..+...
T Consensus 41 K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk~~~~~~ 76 (80)
T d1am9a_ 41 KSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555554 345566667777888888887776554
No 6
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.18 E-value=75 Score=20.51 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030134 82 NQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEK 115 (182)
Q Consensus 82 ~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~ 115 (182)
.+-+..+|+.|..+|+.|-+.-..+...|.....
T Consensus 3 ~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lte 36 (101)
T d2azeb1 3 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 36 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567789999999999999998888888877543
No 7
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.69 E-value=1.2e+02 Score=20.99 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 030134 61 KELQSVEQQIDSGLKLIRSRKNQL 84 (182)
Q Consensus 61 kEL~~LE~qLe~sL~~IRsrK~ql 84 (182)
.|.+.||........+|+.++.+|
T Consensus 2 Qe~~~Le~E~~~~~erI~~K~~~L 25 (148)
T d2azea1 2 QECQNLEVERQRRLERIKQKQSQL 25 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888988888888998887654
No 8
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.71 E-value=68 Score=19.21 Aligned_cols=19 Identities=11% Similarity=0.191 Sum_probs=9.0
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 030134 92 LQKKDKLLKEQNNLLAKKV 110 (182)
Q Consensus 92 LqkKe~~L~eeN~~L~~kl 110 (182)
+......|..++..|+.++
T Consensus 59 l~~~~~~L~~~~~~L~~~l 77 (79)
T d1nlwa_ 59 AVHQIDQLQREQRHLKRQL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333344445555555554
No 9
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.89 E-value=51 Score=25.31 Aligned_cols=39 Identities=13% Similarity=0.406 Sum_probs=31.3
Q ss_pred HHHHHHhcccCC--CCCCCCCHHHHHHHHHHHHHHhHHHHH
Q 030134 41 EVLQRNQKHFMG--EDLADLSLKELQSVEQQIDSGLKLIRS 79 (182)
Q Consensus 41 e~Lq~~~R~l~G--EdL~~Ls~kEL~~LE~qLe~sL~~IRs 79 (182)
..+-..+|++.. ++=-+||++++..+|.+....|.++|.
T Consensus 219 ~~~l~~HRq~fcW~DeW~gmTmedIR~~E~e~q~~L~~~~~ 259 (269)
T d1t27a_ 219 RLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQ 259 (269)
T ss_dssp HHHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHheeHHHHcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 556667777654 445679999999999999999998885
No 10
>d3d19a2 a.29.13.1 (A:145-274) Uncharacterized protein BCE_G9241_1042 {Bacillus cereus [TaxId: 1396]}
Probab=17.44 E-value=1.4e+02 Score=19.83 Aligned_cols=62 Identities=8% Similarity=-0.062 Sum_probs=48.9
Q ss_pred chHHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 030134 28 NWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 89 (182)
Q Consensus 28 ~~~~E~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi 89 (182)
.+..+........+.|-..-+.+.|--..+.+...|.+|-++...++..+|.=|.++....+
T Consensus 35 ~li~~A~~f~~~Fe~Ll~~a~~l~~~~~~~~~~~~l~~ln~~~~~~~~~~~~FK~~~~~~~l 96 (130)
T d3d19a2 35 KLVDTARNFSNDFDELMYQAIDLESMKPQSQTAPLLDQFLDQNRVSVASLRDFKKTARDLIE 96 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777777777777889999999999999999999999988775443
Done!