BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030136
         (182 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P13240|DR206_PEA Disease resistance response protein 206 OS=Pisum sativum GN=PI206
           PE=2 SV=2
          Length = 184

 Score = 67.8 bits (164), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 12/150 (8%)

Query: 39  NLQFYFHDTL-SGKNP----SAVRIA-QAIDTDK-SP-TLFGIVMMADDPLTETPDPQSK 90
           NL FYFHD L +GKN     SA+  A + +   K +P + FG +++ DDP+T +    SK
Sbjct: 33  NLVFYFHDILYNGKNAANATSAIVAAPEGVSLTKLAPQSHFGNIIVFDDPITLSHSLSSK 92

Query: 91  LVGRAQGLYGSACQDQLSLIMSMSFVFVDGPYNRSSISLLGNNRAMNPVREMPIVGGTGF 150
            VGRAQG Y    ++  +  +S +FV ++  +++ +I+  G +  +   R++ + GGTG 
Sbjct: 93  QVGRAQGFYIYDTKNTYTSWLSFTFV-LNSTHHQGTITFAGADPIVAKTRDISVTGGTGD 151

Query: 151 FRLARGYAIAQTHRMDFKTGDAIVRYNVTV 180
           F + RG A   T   +   G+A  R  V +
Sbjct: 152 FFMHRGIATITTDAFE---GEAYFRLGVYI 178


>sp|Q0BU03|RL33_GRABC 50S ribosomal protein L33 OS=Granulibacter bethesdensis (strain
           ATCC BAA-1260 / CGDNIH1) GN=rpmG PE=3 SV=1
          Length = 55

 Score = 31.6 bits (70), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 148 TGFFRLARGYAIAQTHRMDFKTGDAIVRYNVT 179
           TGFF + +  A AQT +++F+  D +VR +VT
Sbjct: 17  TGFFYVTKKNARAQTGKLEFRKYDPVVRKHVT 48


>sp|Q91447|MP2K1_SERCA Dual specificity mitogen-activated protein kinase kinase 1
           (Fragment) OS=Serinus canaria GN=MAP2K1 PE=2 SV=1
          Length = 388

 Score = 30.4 bits (67), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 63  DTDKSPTLFGIVMMADDPLTETPDPQSKLVGRAQGLYGSACQDQLSLIMSMSFVFVDGP 121
           D+ +   +FG  +  D P+TET  P+ +  GR    YGS  +  +++   + ++  + P
Sbjct: 260 DSKELELMFGCPVEGDSPVTET-SPRQRAPGRPMSSYGSDSRPPMAIFELLDYIVNEPP 317


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.132    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,153,515
Number of Sequences: 539616
Number of extensions: 2321175
Number of successful extensions: 4145
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4142
Number of HSP's gapped (non-prelim): 4
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)