Query 030136
Match_columns 182
No_of_seqs 126 out of 542
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 09:05:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03018 Dirigent: Dirigent-li 100.0 9.2E-54 2E-58 337.9 19.2 144 36-182 1-144 (144)
2 PF06351 Allene_ox_cyc: Allene 97.6 0.0014 3E-08 52.9 11.7 119 35-165 5-127 (176)
3 PLN02343 allene oxide cyclase 97.0 0.014 3.1E-07 48.9 11.5 90 69-165 85-178 (229)
4 PF11528 DUF3224: Protein of u 78.6 29 0.00062 27.2 9.3 87 89-180 40-131 (134)
5 PF07172 GRP: Glycine rich pro 75.5 3.8 8.2E-05 30.3 3.3 16 1-16 1-16 (95)
6 PTZ00312 inositol-1,4,5-tripho 32.0 1.2E+02 0.0027 27.4 5.6 14 74-87 38-51 (356)
7 PF00879 Defensin_propep: Defe 19.9 2.2E+02 0.0048 18.9 3.8 13 1-13 1-13 (52)
8 KOG3358 Uncharacterized secret 19.7 61 0.0013 27.2 1.3 24 37-60 38-61 (211)
9 PF06347 SH3_4: Bacterial SH3 19.1 70 0.0015 20.3 1.3 17 80-96 6-22 (55)
10 PF08239 SH3_3: Bacterial SH3 18.8 85 0.0018 19.5 1.7 16 80-95 4-19 (55)
No 1
>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants.
Probab=100.00 E-value=9.2e-54 Score=337.94 Aligned_cols=144 Identities=51% Similarity=0.833 Sum_probs=136.0
Q ss_pred CeeEEEEEeeeeCCCCCcceEEEeecccCCCCCCCceeEEEEecccccCCCCCCCceeeeEEEEEEeccCCceeEEEEEE
Q 030136 36 TTTNLQFYFHDTLSGKNPSAVRIAQAIDTDKSPTLFGIVMMADDPLTETPDPQSKLVGRAQGLYGSACQDQLSLIMSMSF 115 (182)
Q Consensus 36 ~~t~l~fY~Hd~~~g~n~t~~~v~~~~~~~~~~~~FG~~~v~Dd~lt~gp~~~S~~VGRaqG~~~~~~~~~~~~~~~~~~ 115 (182)
|++||+|||||+++|||+|+++|++++.++. .+||+++|+|||||+||+++||+||||||+|+.+++++.+|++++++
T Consensus 1 ~~t~l~fY~H~~~~g~n~t~~~v~~~~~~~~--~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~s~~~~~~~~~~~~ 78 (144)
T PF03018_consen 1 KETHLHFYMHDIVSGPNPTAVVVAEPPGPSS--SGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSASLDGSSWFMSFTL 78 (144)
T ss_pred CceEEEEEeeecCCCCCCCEEEeccCCCCCC--CCCcEEEEEeeceEcCCCCCCccceEEEEEEEeecccCccEEEEEEE
Confidence 6899999999999999999999998875432 38999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCceEEEecccCCCCCceeeeEeeccccccceEEEEEEEEEEeccCCCCeEEEEEEEEEC
Q 030136 116 VFVDGPYNRSSISLLGNNRAMNPVREMPIVGGTGFFRLARGYAIAQTHRMDFKTGDAIVRYNVTVVH 182 (182)
Q Consensus 116 vF~~g~~~GStl~v~G~~~~~~~~~E~aVVGGTG~Fr~ArG~a~~~t~~~~~~~~~~v~e~~V~v~h 182 (182)
+|++++||||||+++|+++..+++||||||||||+|||||||++++++ .+..+.++|+|||||++|
T Consensus 79 vF~~g~~~GStl~v~G~~~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~-~~~~~~~~v~e~~v~~~h 144 (144)
T PF03018_consen 79 VFEDGEYNGSTLSVMGRDPFFEPVRELAVVGGTGEFRMARGYAKLRTV-FDSSGGNAVLELNVHLFH 144 (144)
T ss_pred EEEecccCCCeEEEeCCCcccCcccEEeEecCCCeEcceEEEEEEEEE-eecCCCCEEEEEEEEEEC
Confidence 999999999999999999999999999999999999999999999999 345588999999999999
No 2
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=97.62 E-value=0.0014 Score=52.93 Aligned_cols=119 Identities=21% Similarity=0.228 Sum_probs=74.2
Q ss_pred CCeeEEEEEeeeeCCCCCcceEEEeecccCCCCCCCceeEEEEecccccCCCCCCCceeeeEEEEEEec----cCCceeE
Q 030136 35 ETTTNLQFYFHDTLSGKNPSAVRIAQAIDTDKSPTLFGIVMMADDPLTETPDPQSKLVGRAQGLYGSAC----QDQLSLI 110 (182)
Q Consensus 35 ~~~t~l~fY~Hd~~~g~n~t~~~v~~~~~~~~~~~~FG~~~v~Dd~lt~gp~~~S~~VGRaqG~~~~~~----~~~~~~~ 110 (182)
.|...|++|=-+-.-...|.-.++-+ ......|..+=|.|+|++|-. -+-+|--+|+.+.-. +.+..+=
T Consensus 5 ~kvqel~vyeiNErdR~SPa~L~ls~-----k~~nslGDlvpFsNklY~g~l--~~rlGitaG~Cvliq~~p~k~GdryE 77 (176)
T PF06351_consen 5 TKVQELSVYEINERDRGSPAYLRLSQ-----KSVNSLGDLVPFSNKLYDGDL--QKRLGITAGICVLIQHVPEKKGDRYE 77 (176)
T ss_dssp ---EEEEEEEE--S-S--S--B--SS-----SSSS-TT-EEEEEEEEEETTS--S-EEEEEEEEEEEEEEECCCTEEEEE
T ss_pred cceEEEEEEEEcccccCCCcEEEccc-----ccchhcccccccccccccchh--hhhhcccceEEEEEEeccccCCceEE
Confidence 45667777744433211222233321 234568999999999999975 688999999987543 2333455
Q ss_pred EEEEEEEcCCCCCCceEEEecccCCCCCceeeeEeeccccccceEEEEEEEEEEe
Q 030136 111 MSMSFVFVDGPYNRSSISLLGNNRAMNPVREMPIVGGTGFFRLARGYAIAQTHRM 165 (182)
Q Consensus 111 ~~~~~vF~~g~~~GStl~v~G~~~~~~~~~E~aVVGGTG~Fr~ArG~a~~~t~~~ 165 (182)
-.+++.|-+ .| .|+++|..-..+ ..-++|.||||-|+.|+|-+++..+-+
T Consensus 78 aiySfyfGd---yG-hISvqGpy~t~e-DtyLAVTGGtGiF~g~~GqVkL~qivf 127 (176)
T PF06351_consen 78 AIYSFYFGD---YG-HISVQGPYLTYE-DTYLAVTGGTGIFEGVYGQVKLHQIVF 127 (176)
T ss_dssp EEEEEE-GG---GE-EEEEEEEEETTS--EEEEEEEEEETTTT-EEEEEEEEEET
T ss_pred EEEEEEecc---cc-eEEEeccccccc-ceeEEEeccCceeecceEEEEEEEeec
Confidence 566777854 24 799999876553 468999999999999999999887754
No 3
>PLN02343 allene oxide cyclase
Probab=97.02 E-value=0.014 Score=48.88 Aligned_cols=90 Identities=23% Similarity=0.245 Sum_probs=71.3
Q ss_pred CCceeEEEEecccccCCCCCCCceeeeEEEEEEecc----CCceeEEEEEEEEcCCCCCCceEEEecccCCCCCceeeeE
Q 030136 69 TLFGIVMMADDPLTETPDPQSKLVGRAQGLYGSACQ----DQLSLIMSMSFVFVDGPYNRSSISLLGNNRAMNPVREMPI 144 (182)
Q Consensus 69 ~~FG~~~v~Dd~lt~gp~~~S~~VGRaqG~~~~~~~----~~~~~~~~~~~vF~~g~~~GStl~v~G~~~~~~~~~E~aV 144 (182)
...|+++=|.|+|++|- .-|-+|--.|+.+.-.. .+..+=-.+++.|-| | | .|++||..-.-+. .-++|
T Consensus 85 ~sLGDlVPFsNKlY~g~--L~kRlGiTaG~Cvliq~~pek~gDryEa~ySfyfGD--y-G-HisvqGpyltyeD-t~Lai 157 (229)
T PLN02343 85 NALGDLVPFTNKLYTGD--LKKRLGITAGLCVLIQHVPEKKGDRYEAIYSFYFGD--Y-G-HISVQGPYLTYED-TYLAI 157 (229)
T ss_pred ccccceeccccccccch--hhhhhcccceeEEEEEeccccCCceeEEEEEEEecC--c-c-eeEEecccccccc-ceEEe
Confidence 56899999999999986 34779999999875432 344566777888855 2 4 6999999766544 58999
Q ss_pred eeccccccceEEEEEEEEEEe
Q 030136 145 VGGTGFFRLARGYAIAQTHRM 165 (182)
Q Consensus 145 VGGTG~Fr~ArG~a~~~t~~~ 165 (182)
.||+|-|..|+|-+++..+.+
T Consensus 158 TGGsGiFega~GqvkL~qivf 178 (229)
T PLN02343 158 TGGSGIFEGAYGQVKLHQIVF 178 (229)
T ss_pred ecCcceeecceeEEEEeeeee
Confidence 999999999999999887664
No 4
>PF11528 DUF3224: Protein of unknown function (DUF3224); InterPro: IPR021607 This bacterial family of proteins has no known function. ; PDB: 2OOJ_B 2Q03_B.
Probab=78.64 E-value=29 Score=27.17 Aligned_cols=87 Identities=18% Similarity=0.174 Sum_probs=49.8
Q ss_pred CCceeeeEEEEEEecc-CCceeEEEEEEEE-cCCCCCCc-eEEEecccCCCCCceeeeEe--eccccccceEEEEEEEEE
Q 030136 89 SKLVGRAQGLYGSACQ-DQLSLIMSMSFVF-VDGPYNRS-SISLLGNNRAMNPVREMPIV--GGTGFFRLARGYAIAQTH 163 (182)
Q Consensus 89 S~~VGRaqG~~~~~~~-~~~~~~~~~~~vF-~~g~~~GS-tl~v~G~~~~~~~~~E~aVV--GGTG~Fr~ArG~a~~~t~ 163 (182)
-.+.|++++-++.+-. ++...+..+.-+= .-...+|| .|+-.|.........+|-|| -|||++...+|-..+...
T Consensus 40 G~l~Gts~~~~L~~y~~~g~a~yva~E~~~Gtl~Gr~GsFvl~h~G~~~~g~~~~~~~VVPgSGTGeL~Gl~Gsg~~~~~ 119 (134)
T PF11528_consen 40 GDLEGTSTGEYLMAYDPDGSAGYVAFERFTGTLDGRSGSFVLQHSGTFDAGTASSSFTVVPGSGTGELAGLSGSGTITID 119 (134)
T ss_dssp TTEEEEEEEEEEEEEECTTEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEE-TT--EETTTTEEEEEEEEEE
T ss_pred eEEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCCchhhcCCEEEEEEEEC
Confidence 4577888888886644 4545555443211 11123554 22333443333345789999 999999999999887643
Q ss_pred EeccCCCCeEEEEEEEE
Q 030136 164 RMDFKTGDAIVRYNVTV 180 (182)
Q Consensus 164 ~~~~~~~~~v~e~~V~v 180 (182)
. +...++|+..+
T Consensus 120 ~-----g~h~y~f~y~l 131 (134)
T PF11528_consen 120 E-----GQHAYDFEYTL 131 (134)
T ss_dssp T-----TCEEEEEEEEE
T ss_pred C-----CCceeeEEEEC
Confidence 2 44576777655
No 5
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=75.51 E-value=3.8 Score=30.35 Aligned_cols=16 Identities=19% Similarity=0.112 Sum_probs=8.7
Q ss_pred CchhHHHHHHHHHHHH
Q 030136 1 MAKLSAVVSLLISRLV 16 (182)
Q Consensus 1 ma~~~~~~~~~~~~~~ 16 (182)
||...++|+.|+++++
T Consensus 1 MaSK~~llL~l~LA~l 16 (95)
T PF07172_consen 1 MASKAFLLLGLLLAAL 16 (95)
T ss_pred CchhHHHHHHHHHHHH
Confidence 7877655554444333
No 6
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=31.99 E-value=1.2e+02 Score=27.40 Aligned_cols=14 Identities=50% Similarity=0.736 Sum_probs=11.4
Q ss_pred EEEEecccccCCCC
Q 030136 74 VMMADDPLTETPDP 87 (182)
Q Consensus 74 ~~v~Dd~lt~gp~~ 87 (182)
+-|.|||+|-|-++
T Consensus 38 v~v~ddp~ty~~~~ 51 (356)
T PTZ00312 38 VPVVDDPLTYGSSP 51 (356)
T ss_pred eeeccCccccCCCC
Confidence 67889999988765
No 7
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=19.92 E-value=2.2e+02 Score=18.89 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=7.7
Q ss_pred CchhHHHHHHHHH
Q 030136 1 MAKLSAVVSLLIS 13 (182)
Q Consensus 1 ma~~~~~~~~~~~ 13 (182)
|.+|.++..+|++
T Consensus 1 MRTL~LLaAlLLl 13 (52)
T PF00879_consen 1 MRTLALLAALLLL 13 (52)
T ss_pred CcHHHHHHHHHHH
Confidence 7777765554433
No 8
>KOG3358 consensus Uncharacterized secreted protein SDF2 (Stromal cell-derived factor 2), contains MIR domains [General function prediction only]
Probab=19.67 E-value=61 Score=27.15 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=17.1
Q ss_pred eeEEEEEeeeeCCCCCcceEEEee
Q 030136 37 TTNLQFYFHDTLSGKNPSAVRIAQ 60 (182)
Q Consensus 37 ~t~l~fY~Hd~~~g~n~t~~~v~~ 60 (182)
...+++--||+-.|...-+..|.+
T Consensus 38 ~~~~RLHSHDVkYGSgSGQQSVTg 61 (211)
T KOG3358|consen 38 KHKFRLHSHDVKYGSGSGQQSVTG 61 (211)
T ss_pred ccceeeeccccCccCCCCcceeec
Confidence 368999999999876555544443
No 9
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=19.05 E-value=70 Score=20.30 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=14.0
Q ss_pred ccccCCCCCCCceeeeE
Q 030136 80 PLTETPDPQSKLVGRAQ 96 (182)
Q Consensus 80 ~lt~gp~~~S~~VGRaq 96 (182)
+|+.+|+.+|+++.++.
T Consensus 6 ~lr~~P~~~~~vv~~l~ 22 (55)
T PF06347_consen 6 NLRSGPSSNSPVVARLE 22 (55)
T ss_pred EEEcCCCCCCCEEEEEC
Confidence 57889999999887763
No 10
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=18.78 E-value=85 Score=19.53 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=13.0
Q ss_pred ccccCCCCCCCceeee
Q 030136 80 PLTETPDPQSKLVGRA 95 (182)
Q Consensus 80 ~lt~gp~~~S~~VGRa 95 (182)
.|+.+|+.+|+.|+.+
T Consensus 4 nvR~~p~~~s~~i~~l 19 (55)
T PF08239_consen 4 NVRSGPSTNSPVIGQL 19 (55)
T ss_dssp EEESSSSTTSTEEEEE
T ss_pred EEEeCCCCCChhhEEE
Confidence 3678899999988875
Done!