Query 030136
Match_columns 182
No_of_seqs 126 out of 542
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 14:33:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2brj_A Arabidopsis thaliana ge 98.7 3E-07 1E-11 73.8 14.2 102 68-181 42-147 (188)
2 4h6b_A Allene oxide cyclase; B 98.5 3.6E-06 1.2E-10 67.8 13.2 90 69-165 51-144 (195)
3 2q03_A Uncharacterized protein 46.8 90 0.0031 23.4 10.2 85 89-179 45-136 (138)
4 2ooj_A Hypothetical protein; s 32.2 1.6E+02 0.0054 22.1 12.3 84 89-179 41-132 (141)
5 3h6j_A Neuraminidase, sialidas 26.8 50 0.0017 28.0 3.5 58 103-162 369-436 (438)
6 2xdp_A Lysine-specific demethy 16.7 1.9E+02 0.0064 21.4 4.5 57 67-143 63-119 (123)
7 2qqr_A JMJC domain-containing 13.6 1.8E+02 0.006 21.3 3.6 56 68-143 63-118 (118)
8 2krs_A Probable enterotoxin; a 13.1 77 0.0027 20.5 1.4 16 80-95 12-27 (74)
9 2kq8_A Cell WALL hydrolase; GF 13.0 65 0.0022 20.6 1.0 16 80-95 13-28 (70)
10 1q90_L Cytochrome B6F complex 13.0 1.8E+02 0.0063 16.5 2.8 19 1-19 1-19 (32)
No 1
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=98.74 E-value=3e-07 Score=73.78 Aligned_cols=102 Identities=22% Similarity=0.159 Sum_probs=80.1
Q ss_pred CCCceeEEEEecccccCCCCCCCceeeeEEEEEEec----cCCceeEEEEEEEEcCCCCCCceEEEecccCCCCCceeee
Q 030136 68 PTLFGIVMMADDPLTETPDPQSKLVGRAQGLYGSAC----QDQLSLIMSMSFVFVDGPYNRSSISLLGNNRAMNPVREMP 143 (182)
Q Consensus 68 ~~~FG~~~v~Dd~lt~gp~~~S~~VGRaqG~~~~~~----~~~~~~~~~~~~vF~~g~~~GStl~v~G~~~~~~~~~E~a 143 (182)
....|..+.|+++|.+|-. -+.||.-+|+.+... +.+..+--.+++.|-+. | .|+++|..... +...++
T Consensus 42 ~~slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~gdryE~tyS~yfgd~---G-hISvQGpy~t~-~Dt~LA 114 (188)
T 2brj_A 42 MFGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDY---G-HLSVQGPYLTY-EDSFLA 114 (188)
T ss_dssp SSCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEEEEEEEEEECGGG---E-EEEEEEEEETT-BCEEEE
T ss_pred CcCcccEEeeccccccccc--ceeccccceEEEEEEecCCCCCcEEEEEEEEEeCCC---c-eEEEecccccc-ccceee
Confidence 3568999999999997764 588999999988775 33456777788888652 4 69999995333 336899
Q ss_pred EeeccccccceEEEEEEEEEEeccCCCCeEEEEEEEEE
Q 030136 144 IVGGTGFFRLARGYAIAQTHRMDFKTGDAIVRYNVTVV 181 (182)
Q Consensus 144 VVGGTG~Fr~ArG~a~~~t~~~~~~~~~~v~e~~V~v~ 181 (182)
|.||||.|+.|+|.++++.+.+. .-++|.+|+.
T Consensus 115 ITGGTGif~gA~G~Vkl~~i~~P-----~k~~yTf~L~ 147 (188)
T 2brj_A 115 ITGGAGIFEGAYGQVKLQQLVYP-----TKLFYTFYLK 147 (188)
T ss_dssp EEEEEETTTTCEEEEEEEEEETT-----TEEEEEEEEE
T ss_pred EecCcceEcceEEEEEEEeeccC-----ceEEEEEEEe
Confidence 99999999999999999988753 2477888764
No 2
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=98.46 E-value=3.6e-06 Score=67.84 Aligned_cols=90 Identities=20% Similarity=0.210 Sum_probs=71.2
Q ss_pred CCceeEEEEecccccCCCCCCCceeeeEEEEEEec----cCCceeEEEEEEEEcCCCCCCceEEEecccCCCCCceeeeE
Q 030136 69 TLFGIVMMADDPLTETPDPQSKLVGRAQGLYGSAC----QDQLSLIMSMSFVFVDGPYNRSSISLLGNNRAMNPVREMPI 144 (182)
Q Consensus 69 ~~FG~~~v~Dd~lt~gp~~~S~~VGRaqG~~~~~~----~~~~~~~~~~~~vF~~g~~~GStl~v~G~~~~~~~~~E~aV 144 (182)
...|+++.|+++|++|.. -+-||...|+.+.-. ..+..+--.+++.|.+ .| +|+++|..-..+ ..-++|
T Consensus 51 ~slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~k~GdryEci~Tf~fGD---~G-hIsvqGpy~t~e-Ds~lAI 123 (195)
T 4h6b_A 51 NSLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQKNGDRYEALYSFYFGD---YG-HISVQGPYITYE-DSYLAI 123 (195)
T ss_dssp CCTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETTTTEEEEEEEEEEECGG---GC-EEEEEEEEETTB-CEEEEE
T ss_pred cccccccccccccccccc--cccccccccEEEEEeecCCCCCceEEEEEEEEecC---Cc-eEEEecceeccC-ceeEEE
Confidence 569999999999999986 678999999987663 2333455566788865 35 699999865443 356999
Q ss_pred eeccccccceEEEEEEEEEEe
Q 030136 145 VGGTGFFRLARGYAIAQTHRM 165 (182)
Q Consensus 145 VGGTG~Fr~ArG~a~~~t~~~ 165 (182)
+||||.|+.|+|-+++..+.+
T Consensus 124 TGGTGiF~Ga~GqVkl~qiv~ 144 (195)
T 4h6b_A 124 TGGSGIFAGCYGQAKLHQIIF 144 (195)
T ss_dssp EEESGGGTTCEEEEEEEEEET
T ss_pred ecCcceEcccEEEEEEeEeee
Confidence 999999999999999887764
No 3
>2q03_A Uncharacterized protein; YP_563039.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.80A {Shewanella denitrificans OS217} SCOP: b.159.2.1
Probab=46.84 E-value=90 Score=23.45 Aligned_cols=85 Identities=18% Similarity=0.094 Sum_probs=50.8
Q ss_pred CCceeeeEEEEEEecc-CCceeEEEEE---EEEcCCCCCCc-eEEEecccCCCCCceeeeEee--ccccccceEEEEEEE
Q 030136 89 SKLVGRAQGLYGSACQ-DQLSLIMSMS---FVFVDGPYNRS-SISLLGNNRAMNPVREMPIVG--GTGFFRLARGYAIAQ 161 (182)
Q Consensus 89 S~~VGRaqG~~~~~~~-~~~~~~~~~~---~vF~~g~~~GS-tl~v~G~~~~~~~~~E~aVVG--GTG~Fr~ArG~a~~~ 161 (182)
-.+.|+.++-++.+-. ++...++.+. -.+. ..+|| .|+-.|..........|-||= |||++...+|-..+.
T Consensus 45 G~leGts~~~~L~~~~~~G~A~yva~E~f~Gtl~--Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeLaGl~G~g~~~ 122 (138)
T 2q03_A 45 GVLQGHSEIRYLMSYQDNANATFVGFEHFTGSLG--DKKGSFILQHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFV 122 (138)
T ss_dssp SSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEET--TEEEEEEEEEEEEEETTEEEEEEEECTTCCEETTTTEEEEEEEE
T ss_pred eEEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEEC--CceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEE
Confidence 3478888888876654 4444444332 2222 22454 233344444334457888998 999999999999876
Q ss_pred EEEeccCCCCeEEEEEEE
Q 030136 162 THRMDFKTGDAIVRYNVT 179 (182)
Q Consensus 162 t~~~~~~~~~~v~e~~V~ 179 (182)
... .+..-++|+..
T Consensus 123 ~~~----~G~h~Y~~~y~ 136 (138)
T 2q03_A 123 STE----NGQANYQITLQ 136 (138)
T ss_dssp ECS----TTEEEEEEEEE
T ss_pred Eec----CCceEEEEEEe
Confidence 321 24555666554
No 4
>2ooj_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.84A {Shewanella oneidensis} SCOP: b.159.2.1
Probab=32.25 E-value=1.6e+02 Score=22.09 Aligned_cols=84 Identities=15% Similarity=0.126 Sum_probs=49.9
Q ss_pred CCceeeeEEEEEEecc--CCceeEEEE---EEEEcCCCCCCc-eEEEecccCCCCCceeeeEee--ccccccceEEEEEE
Q 030136 89 SKLVGRAQGLYGSACQ--DQLSLIMSM---SFVFVDGPYNRS-SISLLGNNRAMNPVREMPIVG--GTGFFRLARGYAIA 160 (182)
Q Consensus 89 S~~VGRaqG~~~~~~~--~~~~~~~~~---~~vF~~g~~~GS-tl~v~G~~~~~~~~~E~aVVG--GTG~Fr~ArG~a~~ 160 (182)
-.+.|+.++-++.+-. ++...++.+ +-.+. ..+|| .|+-.|..........|-||= |||++...+|-..+
T Consensus 41 G~leGts~~~~L~~~~~~~G~A~yva~E~f~Gtl~--Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeL~Gl~G~g~~ 118 (141)
T 2ooj_A 41 GELEARSQGEMLSAMTAVKGSAGYVAIEQVVGKLC--GRQGSFVLQHFGIMTDGQNRLHLEVVPHSGAGELTGLYGTMAI 118 (141)
T ss_dssp SSEEEEEEEEEEEEECSSTTCEEEEEEEEEEEEET--TEEEEEEEEEEEEECC--CEEEEEECTTCCEETTTTEEEEEEE
T ss_pred eeEEEEEEEEEEEEEcCCCCcEEEEEEEEEEEEEC--CceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEE
Confidence 3467788888887755 344444443 22222 22454 234444444444558899998 99999999999988
Q ss_pred EEEEeccCCCCeEEEEEEE
Q 030136 161 QTHRMDFKTGDAIVRYNVT 179 (182)
Q Consensus 161 ~t~~~~~~~~~~v~e~~V~ 179 (182)
+.. + +..-++|+..
T Consensus 119 ~~~--~---G~h~y~ldy~ 132 (141)
T 2ooj_A 119 SIE--N---GQHFYEFSFC 132 (141)
T ss_dssp EEE--T---TEEEEEEEEE
T ss_pred EEc--C---CeEEEEEEEE
Confidence 643 2 3444555543
No 5
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
Probab=26.77 E-value=50 Score=27.95 Aligned_cols=58 Identities=28% Similarity=0.352 Sum_probs=36.9
Q ss_pred ccCCceeEEEEEEEEcCCCCCCceEEEe-cccCCCCCceeeeEeeccccc---------cceEEEEEEEE
Q 030136 103 CQDQLSLIMSMSFVFVDGPYNRSSISLL-GNNRAMNPVREMPIVGGTGFF---------RLARGYAIAQT 162 (182)
Q Consensus 103 ~~~~~~~~~~~~~vF~~g~~~GStl~v~-G~~~~~~~~~E~aVVGGTG~F---------r~ArG~a~~~t 162 (182)
+.....|-..|--.|++|.++||--++. |...+. ...-+-|=|||.| |.|.||..++.
T Consensus 369 ssspstwnivmpsyfndgghkgsgaqvevgslnir--lgtgaavwgtgyfggidnsattrlatgyyrvra 436 (438)
T 3h6j_A 369 SSSPSTWNIVMPSYFNDGGHKGSGAQVEVGSLNIR--LGTGAAVWGTGYFGGIDNSATTRLATGYYRVRA 436 (438)
T ss_dssp SSSCSCCEECCCEEEESSSEEEESEEEEECSSEEE--EEECSBSBCCSCBTTTBCSGGGCBSEEEEEEEE
T ss_pred cCCCcceeEeccceecCCCcCCccceEEeeeEEEE--eccCceeeeccccccccchhhheeccceEEEEe
Confidence 3344578888888999999999855442 222111 1222445578877 67888876653
No 6
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=16.75 E-value=1.9e+02 Score=21.36 Aligned_cols=57 Identities=23% Similarity=0.287 Sum_probs=34.3
Q ss_pred CCCCceeEEEEecccccCCCCCCCceeeeEEEEEEeccCCceeEEEEEEEEcCCCCCCceEEEecccCCCCCceeee
Q 030136 67 SPTLFGIVMMADDPLTETPDPQSKLVGRAQGLYGSACQDQLSLIMSMSFVFVDGPYNRSSISLLGNNRAMNPVREMP 143 (182)
Q Consensus 67 ~~~~FG~~~v~Dd~lt~gp~~~S~~VGRaqG~~~~~~~~~~~~~~~~~~vF~~g~~~GStl~v~G~~~~~~~~~E~a 143 (182)
++..-|..+-+.|+ +|.-.+++.+|+ .....+++.|++| |.+ .+-|+.+.....|+|
T Consensus 63 GpP~~G~~V~V~W~--DG~~y~a~f~g~-------------~~~~~YtV~FeDg----s~~-~~kR~~iyt~~E~lP 119 (123)
T 2xdp_A 63 GPPAEGEVVQVKWP--DGKLYGAKYFGS-------------NIAHMYQVEFEDG----SQI-AMKREDIYTLDEELP 119 (123)
T ss_dssp CCCCTTCEEEEECT--TSCEEEEEEEEE-------------EEEEEEEEECTTS----CEE-EEEGGGCCCSSSCCC
T ss_pred CCCCCCCEEEEEcC--CCCEEeEEEeee-------------eeEEEEEEEECCC----CeE-EecHHHccccccccc
Confidence 35567777777775 555444333333 4556778999974 544 556766655555554
No 7
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=13.62 E-value=1.8e+02 Score=21.35 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=33.0
Q ss_pred CCCceeEEEEecccccCCCCCCCceeeeEEEEEEeccCCceeEEEEEEEEcCCCCCCceEEEecccCCCCCceeee
Q 030136 68 PTLFGIVMMADDPLTETPDPQSKLVGRAQGLYGSACQDQLSLIMSMSFVFVDGPYNRSSISLLGNNRAMNPVREMP 143 (182)
Q Consensus 68 ~~~FG~~~v~Dd~lt~gp~~~S~~VGRaqG~~~~~~~~~~~~~~~~~~vF~~g~~~GStl~v~G~~~~~~~~~E~a 143 (182)
+..-|..+-+.|+ +|.-.+++-+|+ .....+++.|++ ||.+ .+-|+.+.....|+|
T Consensus 63 pP~~G~~V~V~W~--DG~~y~a~f~g~-------------~~~~~Y~V~feD----gs~~-~~kR~~iyt~~E~lP 118 (118)
T 2qqr_A 63 PPAEGEVVQVRWT--DGQVYGAKFVAS-------------HPIQMYQVEFED----GSQL-VVKRDDVYTLDEELP 118 (118)
T ss_dssp CCCTTCEEEEECT--TSCEEEEEEEEE-------------EEEEEEEEEETT----SCEE-EECGGGEEETTSCCC
T ss_pred CCCCCCEEEEEcC--CCCEeeeEEece-------------eEEEEEEEEECC----CCEE-EEcHHHeeccccCCc
Confidence 5567777777775 665444444443 455678899997 4544 445555543334443
No 8
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=13.11 E-value=77 Score=20.53 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=13.6
Q ss_pred ccccCCCCCCCceeee
Q 030136 80 PLTETPDPQSKLVGRA 95 (182)
Q Consensus 80 ~lt~gp~~~S~~VGRa 95 (182)
.|+.+|+.++++|+++
T Consensus 12 nvRs~P~~~~~vi~~l 27 (74)
T 2krs_A 12 NMRSGPGSNYGVIGTL 27 (74)
T ss_dssp EEESSSSTTTCEEEEE
T ss_pred EEEcCCCCCChHHEEE
Confidence 5889999999988875
No 9
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=12.99 E-value=65 Score=20.63 Aligned_cols=16 Identities=6% Similarity=0.245 Sum_probs=13.5
Q ss_pred ccccCCCCCCCceeee
Q 030136 80 PLTETPDPQSKLVGRA 95 (182)
Q Consensus 80 ~lt~gp~~~S~~VGRa 95 (182)
.|+.+|+.++++||++
T Consensus 13 nvRsgP~~~~~ii~~l 28 (70)
T 2kq8_A 13 NVRSGEGTNYRIIGAL 28 (70)
T ss_dssp CSSSSSSSCTTSCCCC
T ss_pred EEEcCCCCCCceEEEE
Confidence 5788999999998874
No 10
>1q90_L Cytochrome B6F complex subunit PETL; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.24.1
Probab=12.95 E-value=1.8e+02 Score=16.54 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=13.3
Q ss_pred CchhHHHHHHHHHHHHHHH
Q 030136 1 MAKLSAVVSLLISRLVAAA 19 (182)
Q Consensus 1 ma~~~~~~~~~~~~~~~~~ 19 (182)
|-++++++.+|+.++..+.
T Consensus 1 M~tiisYf~fL~~al~~t~ 19 (32)
T 1q90_L 1 MLTITSYVGLLIGALVFTL 19 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 6777888887777665543
Done!