BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030138
(182 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48965|IDI2_CAMAC Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata
GN=IPI2 PE=2 SV=1
Length = 309
Score = 153 bits (386), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 89/129 (68%), Gaps = 17/129 (13%)
Query: 30 LFFSSSHFAPRVSSIRRPLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFED 89
+F SSSH + RVSS SS ++ S MGD TDAGMDAVQRRLMFED
Sbjct: 48 VFCSSSHLSVRVSSYH------------SSVAAKATTSAMGDTATDAGMDAVQRRLMFED 95
Query: 90 ECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQV-----CLFC 144
ECILVDEND VVGH+ KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQ F
Sbjct: 96 ECILVDENDHVVGHDTKYNCHLMEKIESDNLLHRAFSVFLFNSKYELLLQQRSATKVTFP 155
Query: 145 ILWVKTCLS 153
++W TC S
Sbjct: 156 LVWTNTCCS 164
>sp|Q38929|IDI1_ARATH Isopentenyl-diphosphate Delta-isomerase I, chloroplastic
OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=3
Length = 291
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/121 (65%), Positives = 88/121 (72%), Gaps = 12/121 (9%)
Query: 38 APRVSSIRRPLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFEDECILVDEN 97
PR+S IR P A R+ S + A+ TM D + DAGMDAVQRRLMFEDECILVDEN
Sbjct: 34 PPRLSPIRSP-----APRTQLSVRAFSAV-TMTD-SNDAGMDAVQRRLMFEDECILVDEN 86
Query: 98 DRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQV-----CLFCILWVKTCL 152
DRVVGH+ KYNCHLMEKIE+ NLLHRAFSVFLFNSKYELLLQ F ++W TC
Sbjct: 87 DRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSKTKVTFPLVWTNTCC 146
Query: 153 S 153
S
Sbjct: 147 S 147
>sp|Q39472|IDI1_CLABR Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri
GN=IPI1 PE=2 SV=2
Length = 287
Score = 144 bits (362), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 85/112 (75%), Gaps = 8/112 (7%)
Query: 47 PLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENK 106
P+SL R S+ + + +TMG+ DAGMDAVQRRLMFEDECILVDEND+VVGHE+K
Sbjct: 35 PISL--TQRFSAKLTFSSQATTMGE-VVDAGMDAVQRRLMFEDECILVDENDKVVGHESK 91
Query: 107 YNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQV-----CLFCILWVKTCLS 153
YNCHLMEKIES NLLHRAFSVFLFNSKYELLLQ F ++W TC S
Sbjct: 92 YNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCS 143
>sp|O48964|IDI1_CAMAC Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata
GN=IPI1 PE=2 SV=1
Length = 235
Score = 143 bits (361), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 74/90 (82%), Gaps = 5/90 (5%)
Query: 69 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF 128
MGDA TDAGMDAVQ+RLMFED+CILVDEND VVGH+ KYNCHLMEKIES NLLHRAFSVF
Sbjct: 1 MGDAATDAGMDAVQKRLMFEDKCILVDENDNVVGHDTKYNCHLMEKIESENLLHRAFSVF 60
Query: 129 LFNSKYELLLQV-----CLFCILWVKTCLS 153
LFNSKYELLLQ F ++W TC S
Sbjct: 61 LFNSKYELLLQQRSATKVTFPLVWTNTCCS 90
>sp|Q39664|IDI2_CLAXA Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana
GN=IPI2 PE=3 SV=1
Length = 290
Score = 140 bits (353), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/144 (56%), Positives = 95/144 (65%), Gaps = 13/144 (9%)
Query: 22 SSSFSKSRLFFSSSHFAPRVSSIRRPLSLR----GASRSSSSSSSARAIST---MGDATT 74
+S K RLF S + R I P LR A S +S S R+I+T MG+A
Sbjct: 4 TSRLYKPRLFSLPSQHSFRALPILSP-PLRSSCIPAPLSVRASLSTRSIATSIAMGEAAA 62
Query: 75 DAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKY 134
DAGMDAVQRRLMF+DECILVDE D VVGHE+KYNCHL EKIES N+LHRAF+VFLFNSK+
Sbjct: 63 DAGMDAVQRRLMFDDECILVDEVDCVVGHESKYNCHLWEKIESGNMLHRAFTVFLFNSKF 122
Query: 135 ELLLQV-----CLFCILWVKTCLS 153
ELLLQ F ++W TC S
Sbjct: 123 ELLLQQRSATKVTFPLVWTNTCCS 146
>sp|Q39471|IDI2_CLABR Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri
GN=IPI2 PE=3 SV=2
Length = 286
Score = 140 bits (352), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/120 (64%), Positives = 87/120 (72%), Gaps = 16/120 (13%)
Query: 40 RVSSIRRPLSLRGASRSSSSSSSARAIST---MGDATTDAGMDAVQRRLMFEDECILVDE 96
R S I PLSLR S S R+I+T MG+A DAGMDAVQRRLMF+DECILVDE
Sbjct: 29 RSSRIAAPLSLR-------VSLSTRSIATSIAMGEAA-DAGMDAVQRRLMFDDECILVDE 80
Query: 97 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQV-----CLFCILWVKTC 151
DRVVGHE+KYNCH+ EKIES N+LHRAFSVFLFNSK+ELLLQ F ++W TC
Sbjct: 81 VDRVVGHESKYNCHMWEKIESGNMLHRAFSVFLFNSKFELLLQQRSATKVTFPLVWTNTC 140
>sp|Q42553|IDI2_ARATH Isopentenyl-diphosphate Delta-isomerase II, chloroplastic
OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1
Length = 284
Score = 137 bits (345), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/112 (66%), Positives = 80/112 (71%), Gaps = 10/112 (8%)
Query: 46 RPLSLRGASRSSSSSSSARAIS-TMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHE 104
RPLS S S + RA S T T DAGMDAVQRRLMFEDECILVDE DRVVGH+
Sbjct: 31 RPLS----SISPRKLPNFRAFSGTAMTDTKDAGMDAVQRRLMFEDECILVDETDRVVGHD 86
Query: 105 NKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQV-----CLFCILWVKTC 151
+KYNCHLME IE+ NLLHRAFSVFLFNSKYELLLQ F ++W TC
Sbjct: 87 SKYNCHLMENIEAKNLLHRAFSVFLFNSKYELLLQQRSNTKVTFPLVWTNTC 138
>sp|P15496|IDI1_YEAST Isopentenyl-diphosphate Delta-isomerase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=IDI1 PE=1 SV=2
Length = 288
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 61/112 (54%), Gaps = 13/112 (11%)
Query: 47 PLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENK 106
PL R +RSS +S+ T +G D Q +LM E+ CI++D +D +G K
Sbjct: 37 PLQQRPNTRSSETSNDESG------ETCFSGHDEEQIKLMNEN-CIVLDWDDNAIGAGTK 89
Query: 107 YNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQV-----CLFCILWVKTCLS 153
CHLME IE LLHRAFSVF+FN + ELLLQ F LW TC S
Sbjct: 90 KVCHLMENIEK-GLLHRAFSVFIFNEQGELLLQQRATEKITFPDLWTNTCCS 140
>sp|Q1LZ95|IDI1_BOVIN Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1
PE=2 SV=2
Length = 227
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 69 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF 128
M + +TD +D Q +LM E CILVDENDR +G E K NCHL E IE LLHRAFSVF
Sbjct: 1 MPEVSTD-DLDERQVQLMAE-MCILVDENDRRIGAETKKNCHLNENIER-GLLHRAFSVF 57
Query: 129 LFNSKYELLLQ 139
LFN++ +LLLQ
Sbjct: 58 LFNTENKLLLQ 68
>sp|Q5R8R6|IDI1_PONAB Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo abelii GN=IDI1
PE=2 SV=2
Length = 227
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 69 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF 128
M + TD +D Q +L+ E CIL+DEND +G E K NCHL E IE LLHRAFSVF
Sbjct: 1 MPEINTDH-LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVF 57
Query: 129 LFNSKYELLLQ 139
LFN++ +LLLQ
Sbjct: 58 LFNTENKLLLQ 68
>sp|Q4R4W5|IDI1_MACFA Isopentenyl-diphosphate Delta-isomerase 1 OS=Macaca fascicularis
GN=IDI1 PE=2 SV=2
Length = 227
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 69 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF 128
M + TD +D Q +L+ E CIL+DEND +G E K NCHL E IE LLHRAFSVF
Sbjct: 1 MPEINTDH-LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVF 57
Query: 129 LFNSKYELLLQ 139
LFN++ +LLLQ
Sbjct: 58 LFNTENKLLLQ 68
>sp|Q9BXS1|IDI2_HUMAN Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo sapiens GN=IDI2
PE=1 SV=1
Length = 227
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 74 TDAGMDAVQRRLM--FEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFN 131
+D +D V RR + E+ I+VDEND+V+G + K NCHL E IE LLHRAFSV LFN
Sbjct: 2 SDINLDWVDRRQLQRLEEMLIVVDENDKVIGADTKRNCHLNENIEK-GLLHRAFSVVLFN 60
Query: 132 SKYELLLQ 139
+K +L+Q
Sbjct: 61 TKNRILIQ 68
>sp|Q13907|IDI1_HUMAN Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo sapiens GN=IDI1
PE=1 SV=2
Length = 227
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 45/62 (72%), Gaps = 2/62 (3%)
Query: 78 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELL 137
+D Q +L+ E CIL+DEND +G E K NCHL E IE LLHRAFSVFLFN++ +LL
Sbjct: 9 LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLL 66
Query: 138 LQ 139
LQ
Sbjct: 67 LQ 68
>sp|P58044|IDI1_MOUSE Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus musculus GN=Idi1
PE=2 SV=1
Length = 227
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 45/62 (72%), Gaps = 2/62 (3%)
Query: 78 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELL 137
+D Q +L+ E CIL+DEND +G + K NCHL E I+ LLHRAFSVFLFN++ +LL
Sbjct: 9 LDEKQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLL 66
Query: 138 LQ 139
LQ
Sbjct: 67 LQ 68
>sp|O35586|IDI1_MESAU Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus
GN=IDI1 PE=2 SV=1
Length = 227
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 45/62 (72%), Gaps = 2/62 (3%)
Query: 78 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELL 137
+D Q +L+ E CIL+DEND +G + K NCHL E I+ LLHRAFSVFLFN++ +LL
Sbjct: 9 LDEQQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLL 66
Query: 138 LQ 139
LQ
Sbjct: 67 LQ 68
>sp|O35760|IDI1_RAT Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattus norvegicus
GN=Idi1 PE=2 SV=2
Length = 227
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
Query: 76 AGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYE 135
+ +D Q +L+ E CIL+DEND +G + K NCHL E I+ L+HRAFSVFLFN++ +
Sbjct: 7 SNLDEKQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLIHRAFSVFLFNTENK 64
Query: 136 LLLQ 139
LLLQ
Sbjct: 65 LLLQ 68
>sp|Q8BFZ6|IDI2_MOUSE Isopentenyl-diphosphate Delta-isomerase 2 OS=Mus musculus GN=Idi2
PE=2 SV=1
Length = 227
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 46/63 (73%), Gaps = 4/63 (6%)
Query: 78 MDAVQ-RRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYEL 136
+D +Q +RL E+ CI++D+ D+++G + K NCHLME I LLHRAFSV LFN K EL
Sbjct: 9 LDELQLKRL--EEMCIVIDKQDQIIGADTKKNCHLMENINK-GLLHRAFSVVLFNMKNEL 65
Query: 137 LLQ 139
L+Q
Sbjct: 66 LVQ 68
>sp|Q10132|IDI1_SCHPO Isopentenyl-diphosphate Delta-isomerase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=idi1 PE=2 SV=2
Length = 229
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 69 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF 128
M D Q RLM E+ CI+VDEND + + K CHLME I LLHRAFS+F
Sbjct: 3 MSSQQEKKDYDEEQLRLM-EEVCIVVDENDVPLRYGTKKECHLMENINK-GLLHRAFSMF 60
Query: 129 LFNSKYELLLQV-----CLFCILWVKTCLS 153
+F+ + LLLQ F LW TC S
Sbjct: 61 IFDEQNRLLLQQRAEEKITFPSLWTNTCCS 90
>sp|O42641|IDI1_PHARH Isopentenyl-diphosphate Delta-isomerase OS=Phaffia rhodozyma GN=IDI
PE=3 SV=1
Length = 251
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 79 DAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESL-NLLHRAFSVFLFN-SKYEL 136
D Q RLM E+ CILV+ +D G +K CHLM I + +LLHRAFSVFLF S L
Sbjct: 23 DEEQVRLM-EERCILVNPDDVAYGEASKKTCHLMSNINAPKDLLHRAFSVFLFRPSDGAL 81
Query: 137 LLQ-----VCLFCILWVKTCLS 153
LLQ F +W TC S
Sbjct: 82 LLQRRADEKITFPGMWTNTCCS 103
>sp|Q9NH02|IDI_DICDI Isopentenyl-diphosphate Delta-isomerase OS=Dictyostelium discoideum
GN=ipi PE=2 SV=1
Length = 239
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 77 GMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYEL 136
G + +Q LM E ECI+VD +D+ + +K HLM I + LLHRAFS+FLFN + +L
Sbjct: 15 GHNEIQIELMKE-ECIVVDNDDKPIRPGSKKETHLMVNINN-GLLHRAFSIFLFNGEGKL 72
Query: 137 LLQV-----CLFCILWVKTCLSMDCHWVV 160
LLQ F W T S W+V
Sbjct: 73 LLQQRALEKITFPGYWTNTVCSHPL-WIV 100
>sp|A8GDW2|IDI_SERP5 Isopentenyl-diphosphate Delta-isomerase OS=Serratia proteamaculans
(strain 568) GN=idi PE=3 SV=1
Length = 179
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 92 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQVCLF-----CIL 146
ILVD +D +G ++K H LLHRAFS+F+F+S+ LLLQ F L
Sbjct: 6 ILVDADDNAIGSQSKTRVHQQ------GLLHRAFSIFIFDSQGRLLLQQRAFSKYHSAGL 59
Query: 147 WVKTC 151
W +C
Sbjct: 60 WTNSC 64
>sp|Q6D3F5|IDI_ERWCT Isopentenyl-diphosphate Delta-isomerase OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=idi PE=3 SV=1
Length = 179
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 6/50 (12%)
Query: 90 ECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQ 139
E +LVDEND+ G K H+ + LHRA +V++FNS+ +LLLQ
Sbjct: 5 EVVLVDENDKPTGVMEKQEAHVKGE------LHRAITVYIFNSRQQLLLQ 48
>sp|Q5YYB6|IDI_NOCFA Isopentenyl-diphosphate Delta-isomerase OS=Nocardia farcinica
(strain IFM 10152) GN=idi PE=3 SV=1
Length = 175
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 93 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQV-----CLFCILW 147
LVDE R VG C + E LHRAFSV LF++ +LLQ F +LW
Sbjct: 5 LVDEAGRAVG-----ACPVAEAHRDPGKLHRAFSVLLFDTAGRVLLQQRAAVKTRFPLLW 59
Query: 148 VKTC 151
TC
Sbjct: 60 ANTC 63
>sp|B1VTW2|IDI_STRGG Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces griseus
subsp. griseus (strain JCM 4626 / NBRC 13350) GN=idi
PE=3 SV=1
Length = 197
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 93 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQ 139
LVDEN +G K H ++ LHRAFSVFLF+ + LLLQ
Sbjct: 24 LVDENGTTIGTAEKLAAH-----QAPGQLHRAFSVFLFDEQGRLLLQ 65
>sp|Q5P011|IDI1_AROAE Isopentenyl-diphosphate Delta-isomerase 1 OS=Aromatoleum aromaticum
(strain EbN1) GN=idi1 PE=3 SV=1
Length = 177
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 88 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQ 139
ED+ ILVDEND +G E K H LHRA S+F+F+S LLLQ
Sbjct: 2 EDQVILVDENDTEIGVEGKMIAH------RSGSLHRAISIFIFDSADRLLLQ 47
>sp|Q5NWG5|IDI2_AROAE Isopentenyl-diphosphate Delta-isomerase 2 OS=Aromatoleum aromaticum
(strain EbN1) GN=idi2 PE=3 SV=1
Length = 189
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 88 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQ 139
ED+ ILVDE+D VG K H LHRA S+F+F+S L+LQ
Sbjct: 2 EDQVILVDEHDNKVGFAGKMAAH------QRGALHRAISIFVFDSHSRLMLQ 47
>sp|Q82MJ7|IDI_STRAW Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces avermitilis
(strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804
/ NRRL 8165 / MA-4680) GN=idi PE=3 SV=1
Length = 197
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 93 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQ 139
LVDEN +G K H + LHRAFSVFLF+ + LLLQ
Sbjct: 24 LVDENGTTIGTAEKLAAH-----QPPGQLHRAFSVFLFDEQGRLLLQ 65
>sp|Q9X7Q6|IDI_STRCO Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=idi PE=3 SV=1
Length = 197
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 93 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQ 139
LVDEN +G K + H + LHRAFSVFLF+ + LL+Q
Sbjct: 24 LVDENGVTIGTAEKLSAH-----QPPGRLHRAFSVFLFDERGRLLIQ 65
>sp|A9AST0|IDI_BURM1 Isopentenyl-diphosphate Delta-isomerase OS=Burkholderia multivorans
(strain ATCC 17616 / 249) GN=idi PE=3 SV=1
Length = 176
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 88 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQ 139
E+ ILVD +DR +G K H LLHRAFS+F+F+S LLLQ
Sbjct: 2 EERLILVDTDDRPIGICEKMRAH------HEGLLHRAFSIFVFDSAGRLLLQ 47
>sp|Q7N1V4|IDI1_PHOLL Isopentenyl-diphosphate Delta-isomerase 1 OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=idi1 PE=3
SV=1
Length = 176
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 5/48 (10%)
Query: 92 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQ 139
+LVDEND VG NK + HL + + LHRAFS F+ NSK E+ +Q
Sbjct: 5 VLVDENDNRVGCINKIDAHL-----NGDHLHRAFSCFIINSKNEVYIQ 47
>sp|Q7N0A6|IDI2_PHOLL Isopentenyl-diphosphate Delta-isomerase 2 OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=idi2 PE=3
SV=1
Length = 177
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 6/48 (12%)
Query: 92 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQ 139
+LVD++D +G K + H +LHRAFS+F+F++K LLLQ
Sbjct: 6 VLVDKHDNPIGSAGKADIH------QKGMLHRAFSIFVFDNKGNLLLQ 47
>sp|A1WXH5|IDI_HALHL Isopentenyl-diphosphate Delta-isomerase OS=Halorhodospira halophila
(strain DSM 244 / SL1) GN=idi PE=3 SV=1
Length = 175
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 89 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQ-----VCLF 143
+ ++VD + VG E K H LH AF VF+FN + ELLLQ F
Sbjct: 2 EHVVIVDPEGQRVGTEEKIRAHA-----DGGTLHLAFCVFVFNPRGELLLQRRADSKYHF 56
Query: 144 CILWVKTC 151
LW TC
Sbjct: 57 SGLWSNTC 64
>sp|Q8Z3X9|IDI_SALTI Isopentenyl-diphosphate Delta-isomerase OS=Salmonella typhi GN=idi
PE=3 SV=1
Length = 181
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLL 138
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLV 48
>sp|B5F5G3|IDI_SALA4 Isopentenyl-diphosphate Delta-isomerase OS=Salmonella agona (strain
SL483) GN=idi PE=3 SV=1
Length = 181
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLL 138
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLV 48
>sp|B5RE00|IDI_SALG2 Isopentenyl-diphosphate Delta-isomerase OS=Salmonella gallinarum
(strain 287/91 / NCTC 13346) GN=idi PE=3 SV=1
Length = 181
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLL 138
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLV 48
>sp|Q8ZM82|IDI_SALTY Isopentenyl-diphosphate Delta-isomerase OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=idi PE=1 SV=1
Length = 181
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLL 138
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLV 48
>sp|B4TUQ7|IDI_SALSV Isopentenyl-diphosphate Delta-isomerase OS=Salmonella
schwarzengrund (strain CVM19633) GN=idi PE=3 SV=1
Length = 181
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLL 138
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLV 48
>sp|B5BFK4|IDI_SALPK Isopentenyl-diphosphate Delta-isomerase OS=Salmonella paratyphi A
(strain AKU_12601) GN=idi PE=3 SV=1
Length = 181
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLL 138
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLV 48
>sp|C0PY11|IDI_SALPC Isopentenyl-diphosphate Delta-isomerase OS=Salmonella paratyphi C
(strain RKS4594) GN=idi PE=3 SV=1
Length = 181
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLL 138
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLV 48
>sp|Q5PL31|IDI_SALPA Isopentenyl-diphosphate Delta-isomerase OS=Salmonella paratyphi A
(strain ATCC 9150 / SARB42) GN=idi PE=3 SV=1
Length = 181
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLL 138
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLV 48
>sp|B4TGV9|IDI_SALHS Isopentenyl-diphosphate Delta-isomerase OS=Salmonella heidelberg
(strain SL476) GN=idi PE=3 SV=1
Length = 181
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLL 138
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLV 48
>sp|B5QXG6|IDI_SALEP Isopentenyl-diphosphate Delta-isomerase OS=Salmonella enteritidis
PT4 (strain P125109) GN=idi PE=3 SV=1
Length = 181
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLL 138
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLV 48
>sp|B5FUF2|IDI_SALDC Isopentenyl-diphosphate Delta-isomerase OS=Salmonella dublin
(strain CT_02021853) GN=idi PE=3 SV=1
Length = 181
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLL 138
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLV 48
>sp|Q57K77|IDI_SALCH Isopentenyl-diphosphate Delta-isomerase OS=Salmonella choleraesuis
(strain SC-B67) GN=idi PE=3 SV=1
Length = 181
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLL 138
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLV 48
>sp|A9N3L5|IDI_SALPB Isopentenyl-diphosphate Delta-isomerase OS=Salmonella paratyphi B
(strain ATCC BAA-1250 / SPB7) GN=idi PE=3 SV=1
Length = 181
Score = 37.4 bits (85), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLL 138
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLV 48
>sp|B4T534|IDI_SALNS Isopentenyl-diphosphate Delta-isomerase OS=Salmonella newport
(strain SL254) GN=idi PE=3 SV=1
Length = 181
Score = 37.4 bits (85), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLL 138
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLV 48
>sp|A6TDP3|IDI_KLEP7 Isopentenyl-diphosphate Delta-isomerase OS=Klebsiella pneumoniae
subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
GN=idi PE=3 SV=1
Length = 184
Score = 37.4 bits (85), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLL 138
M + IL+DE D+ G KY H + LH AFS +LFN + +LL+
Sbjct: 1 MAGEHVILLDEQDQPAGMLEKYAAHTFD-----TPLHLAFSCWLFNQQGQLLV 48
>sp|A9MRI5|IDI_SALAR Isopentenyl-diphosphate Delta-isomerase OS=Salmonella arizonae
(strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=idi PE=3
SV=1
Length = 182
Score = 37.0 bits (84), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLL 138
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLV 48
>sp|B5XUF5|IDI_KLEP3 Isopentenyl-diphosphate Delta-isomerase OS=Klebsiella pneumoniae
(strain 342) GN=idi PE=3 SV=1
Length = 184
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLL 138
M + IL+DE D+ G KY H ++ LH AFS +LFN + + L+
Sbjct: 1 MAGEHVILLDEQDQPAGMLEKYAAHTLD-----TPLHLAFSCWLFNQQGQFLV 48
>sp|A4WE41|IDI_ENT38 Isopentenyl-diphosphate Delta-isomerase OS=Enterobacter sp. (strain
638) GN=idi PE=3 SV=1
Length = 183
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 85 LMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYE-LLLQVCLF 143
+ ++ ILV++ VVG + KY H S LH AFS +LFN + + L+ + L
Sbjct: 1 MSIQEHVILVNDQGEVVGTQEKYAAHT-----SHTSLHLAFSSWLFNDRGQCLVTRRALS 55
Query: 144 CILWVKTCLSMDCHWVVQICG 164
I W W +CG
Sbjct: 56 KIAWPGV-------WTNSVCG 69
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.130 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,630,894
Number of Sequences: 539616
Number of extensions: 1984046
Number of successful extensions: 11661
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 10435
Number of HSP's gapped (non-prelim): 946
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)