Query 030138
Match_columns 182
No_of_seqs 187 out of 805
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 09:07:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02552 isopentenyl-diphospha 100.0 2E-34 4.4E-39 247.6 10.5 108 69-176 3-132 (247)
2 KOG0142 Isopentenyl pyrophosph 100.0 2.1E-31 4.6E-36 225.5 3.0 105 70-176 2-120 (225)
3 COG1443 Idi Isopentenyldiphosp 99.9 2.2E-27 4.7E-32 197.2 4.4 85 87-175 2-91 (185)
4 PLN02791 Nudix hydrolase homol 99.9 9.4E-26 2E-30 218.6 7.2 84 86-175 1-91 (770)
5 cd03676 Nudix_hydrolase_3 Memb 99.9 6.4E-25 1.4E-29 175.7 8.4 82 88-175 4-94 (180)
6 PRK03759 isopentenyl-diphospha 99.9 3.2E-24 7E-29 173.4 7.3 86 85-175 2-92 (184)
7 cd02885 IPP_Isomerase Isopente 99.9 1.6E-23 3.4E-28 165.9 7.5 82 88-175 1-88 (165)
8 PRK15393 NUDIX hydrolase YfcD; 99.9 1.9E-23 4.2E-28 169.2 7.2 89 81-175 2-95 (180)
9 TIGR02150 IPP_isom_1 isopenten 99.9 2.9E-23 6.3E-28 164.3 7.6 78 91-175 1-83 (158)
10 cd04692 Nudix_Hydrolase_33 Mem 99.6 3E-16 6.4E-21 120.9 5.5 55 121-175 1-63 (144)
11 cd04697 Nudix_Hydrolase_38 Mem 99.5 1.5E-14 3.3E-19 109.2 5.1 53 123-175 1-58 (126)
12 cd04693 Nudix_Hydrolase_34 Mem 99.4 3.8E-13 8.3E-18 100.8 5.1 52 123-175 1-57 (127)
13 PRK15472 nucleoside triphospha 99.3 2.8E-12 6.1E-17 98.1 5.6 54 121-175 2-60 (141)
14 PF00293 NUDIX: NUDIX domain; 99.1 6.4E-11 1.4E-15 86.7 5.0 55 121-176 1-60 (134)
15 cd04682 Nudix_Hydrolase_23 Mem 99.1 1.8E-10 3.8E-15 86.0 5.3 52 122-175 1-58 (122)
16 cd04694 Nudix_Hydrolase_35 Mem 99.1 2.8E-10 6.1E-15 89.8 5.7 51 123-174 2-57 (143)
17 cd04681 Nudix_Hydrolase_22 Mem 99.0 3E-10 6.4E-15 84.8 5.4 51 124-175 3-56 (130)
18 cd04664 Nudix_Hydrolase_7 Memb 99.0 3.5E-10 7.7E-15 84.7 5.0 53 123-176 2-58 (129)
19 cd04696 Nudix_Hydrolase_37 Mem 99.0 6.3E-10 1.4E-14 83.1 5.7 52 123-175 3-55 (125)
20 cd04678 Nudix_Hydrolase_19 Mem 99.0 7.7E-10 1.7E-14 82.7 6.0 53 122-175 2-57 (129)
21 cd03430 GDPMH GDP-mannose glyc 99.0 8.1E-10 1.8E-14 86.2 5.5 52 122-174 12-66 (144)
22 PRK09438 nudB dihydroneopterin 99.0 9.9E-10 2.1E-14 84.6 5.7 54 121-175 6-60 (148)
23 cd03426 CoAse Coenzyme A pyrop 99.0 9.9E-10 2.2E-14 86.6 5.7 53 122-175 2-62 (157)
24 cd03674 Nudix_Hydrolase_1 Memb 98.9 1.9E-09 4.1E-14 82.7 5.9 53 122-175 2-55 (138)
25 cd04685 Nudix_Hydrolase_26 Mem 98.9 1.6E-09 3.4E-14 84.2 5.4 52 123-175 1-57 (133)
26 PRK00714 RNA pyrophosphohydrol 98.9 1.7E-09 3.8E-14 85.7 5.6 55 120-175 6-61 (156)
27 cd04679 Nudix_Hydrolase_20 Mem 98.9 2.1E-09 4.4E-14 80.2 5.5 53 122-175 2-57 (125)
28 cd04680 Nudix_Hydrolase_21 Mem 98.9 2.3E-09 4.9E-14 78.4 5.6 50 124-174 2-51 (120)
29 PRK15434 GDP-mannose mannosyl 98.9 2.7E-09 5.8E-14 86.2 6.1 55 119-174 14-71 (159)
30 cd03671 Ap4A_hydrolase_plant_l 98.9 2.5E-09 5.3E-14 82.9 5.6 55 121-176 2-57 (147)
31 cd03424 ADPRase_NUDT5 ADP-ribo 98.9 2.2E-09 4.8E-14 80.9 5.1 53 122-175 2-58 (137)
32 cd04700 DR1025_like DR1025 fro 98.9 3.5E-09 7.7E-14 82.1 5.9 55 120-175 11-68 (142)
33 cd04670 Nudix_Hydrolase_12 Mem 98.9 4.2E-09 9E-14 78.7 5.9 53 122-175 2-56 (127)
34 cd04699 Nudix_Hydrolase_39 Mem 98.9 4.8E-09 1.1E-13 77.1 5.9 51 124-175 3-58 (129)
35 cd04683 Nudix_Hydrolase_24 Mem 98.9 4E-09 8.8E-14 77.7 5.3 50 124-175 2-55 (120)
36 cd04677 Nudix_Hydrolase_18 Mem 98.9 4.5E-09 9.7E-14 78.2 5.5 56 119-175 4-59 (132)
37 cd03429 NADH_pyrophosphatase N 98.9 4.1E-09 8.8E-14 80.6 5.4 51 124-175 2-54 (131)
38 cd04673 Nudix_Hydrolase_15 Mem 98.8 1.7E-08 3.7E-13 73.7 5.8 51 124-176 2-55 (122)
39 PLN02839 nudix hydrolase 98.7 1.6E-08 3.6E-13 92.4 6.6 83 88-176 174-265 (372)
40 cd04671 Nudix_Hydrolase_13 Mem 98.7 1.8E-08 3.9E-13 76.7 5.8 52 124-176 2-56 (123)
41 cd04684 Nudix_Hydrolase_25 Con 98.7 2E-08 4.4E-13 73.7 5.6 50 124-175 2-54 (128)
42 cd04676 Nudix_Hydrolase_17 Mem 98.7 3.6E-08 7.7E-13 71.9 5.9 51 124-175 4-54 (129)
43 cd02883 Nudix_Hydrolase Nudix 98.7 3.2E-08 7E-13 70.1 5.3 52 123-175 1-54 (123)
44 cd03425 MutT_pyrophosphohydrol 98.7 4.1E-08 8.8E-13 70.7 5.7 50 124-174 3-56 (124)
45 cd03427 MTH1 MutT homolog-1 (M 98.7 5E-08 1.1E-12 73.4 6.1 51 123-175 2-55 (137)
46 PRK10776 nucleoside triphospha 98.7 4.8E-08 1E-12 71.6 5.9 50 124-174 6-59 (129)
47 cd03673 Ap6A_hydrolase Diadeno 98.6 7.3E-08 1.6E-12 71.0 5.3 52 123-175 2-56 (131)
48 cd04688 Nudix_Hydrolase_29 Mem 98.6 1.3E-07 2.8E-12 70.6 5.9 51 122-175 2-52 (126)
49 cd04691 Nudix_Hydrolase_32 Mem 98.5 1.3E-07 2.8E-12 70.7 5.3 48 127-176 5-57 (117)
50 PRK10546 pyrimidine (deoxy)nuc 98.5 2.1E-07 4.6E-12 69.8 6.2 48 126-174 7-58 (135)
51 cd04690 Nudix_Hydrolase_31 Mem 98.5 2.1E-07 4.6E-12 68.1 5.8 51 124-175 2-52 (118)
52 cd04687 Nudix_Hydrolase_28 Mem 98.5 1.8E-07 3.8E-12 70.2 5.4 51 123-175 2-54 (128)
53 cd03672 Dcp2p mRNA decapping e 98.5 3.2E-07 6.9E-12 72.2 6.1 51 124-175 3-54 (145)
54 cd04669 Nudix_Hydrolase_11 Mem 98.5 3E-07 6.4E-12 69.1 5.7 50 125-175 3-54 (121)
55 TIGR00586 mutt mutator mutT pr 98.5 3.9E-07 8.4E-12 67.3 6.2 51 123-174 5-59 (128)
56 cd04672 Nudix_Hydrolase_14 Mem 98.5 4.2E-07 9E-12 67.9 6.1 52 124-177 4-55 (123)
57 cd04511 Nudix_Hydrolase_4 Memb 98.4 7.2E-07 1.6E-11 67.5 5.6 52 123-176 14-68 (130)
58 cd03428 Ap4A_hydrolase_human_l 98.4 5.6E-07 1.2E-11 66.9 4.8 50 123-175 3-56 (130)
59 cd04689 Nudix_Hydrolase_30 Mem 98.3 1.2E-06 2.6E-11 65.2 6.1 52 122-175 1-52 (125)
60 PLN02325 nudix hydrolase 98.3 1.5E-06 3.2E-11 68.1 5.8 52 121-174 8-62 (144)
61 cd04695 Nudix_Hydrolase_36 Mem 98.3 1.4E-06 3E-11 66.0 5.3 44 131-175 11-56 (131)
62 cd03675 Nudix_Hydrolase_2 Cont 98.2 2.2E-06 4.8E-11 64.3 5.3 49 125-175 3-53 (134)
63 cd04686 Nudix_Hydrolase_27 Mem 98.1 6E-06 1.3E-10 63.0 5.6 50 124-175 2-51 (131)
64 cd04667 Nudix_Hydrolase_10 Mem 98.1 4.9E-06 1.1E-10 61.1 4.7 42 132-175 9-50 (112)
65 COG1051 ADP-ribose pyrophospha 98.1 5.7E-06 1.2E-10 65.5 5.4 55 120-175 8-64 (145)
66 PRK08999 hypothetical protein; 98.1 6.9E-06 1.5E-10 70.7 6.2 52 122-174 5-60 (312)
67 cd04674 Nudix_Hydrolase_16 Mem 98.0 1.6E-05 3.5E-10 61.6 5.4 50 125-175 7-58 (118)
68 PRK00241 nudC NADH pyrophospha 98.0 1.6E-05 3.6E-10 68.7 6.0 50 124-175 134-185 (256)
69 PRK05379 bifunctional nicotina 97.9 2.1E-05 4.5E-10 70.1 5.6 52 122-175 203-257 (340)
70 cd04662 Nudix_Hydrolase_5 Memb 97.9 2.3E-05 4.9E-10 62.1 5.1 51 124-175 2-62 (126)
71 PRK11762 nudE adenosine nucleo 97.8 3.2E-05 7E-10 62.7 5.6 51 123-174 48-102 (185)
72 cd04666 Nudix_Hydrolase_9 Memb 97.7 6.6E-05 1.4E-09 57.3 5.2 50 124-175 2-55 (122)
73 COG0494 MutT NTP pyrophosphohy 97.7 9.9E-05 2.2E-09 52.3 5.7 53 124-177 13-68 (161)
74 cd04665 Nudix_Hydrolase_8 Memb 97.6 0.00011 2.4E-09 56.6 5.1 49 125-176 3-51 (118)
75 cd03431 DNA_Glycosylase_C DNA 97.6 0.00019 4.1E-09 51.7 6.0 50 122-172 2-55 (118)
76 cd04661 MRP_L46 Mitochondrial 97.6 8.4E-05 1.8E-09 57.0 4.0 42 133-175 12-55 (132)
77 TIGR00052 nudix-type nucleosid 97.5 0.0002 4.3E-09 59.0 5.4 51 124-175 46-106 (185)
78 PRK10729 nudF ADP-ribose pyrop 97.4 0.00047 1E-08 57.7 6.6 52 123-175 50-111 (202)
79 PRK10707 putative NUDIX hydrol 97.1 0.00091 2E-08 55.5 5.4 51 124-175 32-90 (190)
80 cd04663 Nudix_Hydrolase_6 Memb 97.0 0.0021 4.6E-08 50.7 6.1 52 124-177 2-55 (126)
81 TIGR02705 nudix_YtkD nucleosid 96.6 0.004 8.6E-08 50.8 5.1 49 124-175 26-74 (156)
82 PRK15009 GDP-mannose pyrophosp 96.6 0.0042 9.1E-08 51.6 5.2 52 123-175 46-107 (191)
83 COG2816 NPY1 NTP pyrophosphohy 96.3 0.005 1.1E-07 55.0 4.5 49 124-173 146-195 (279)
84 PLN02709 nudix hydrolase 96.3 0.0076 1.7E-07 52.0 5.3 58 118-176 29-98 (222)
85 cd03670 ADPRase_NUDT9 ADP-ribo 96.2 0.0079 1.7E-07 50.4 4.8 38 136-174 51-88 (186)
86 KOG3084 NADH pyrophosphatase I 96.1 0.0072 1.6E-07 55.3 4.3 49 124-173 189-240 (345)
87 KOG4313 Thiamine pyrophosphoki 95.9 0.016 3.5E-07 51.9 5.5 78 90-174 106-193 (306)
88 PLN03143 nudix hydrolase; Prov 95.2 0.067 1.4E-06 47.8 7.0 80 93-175 94-188 (291)
89 KOG2839 Diadenosine and diphos 95.0 0.06 1.3E-06 44.2 5.5 53 121-174 8-64 (145)
90 KOG3041 Nucleoside diphosphate 94.7 0.12 2.6E-06 45.0 7.0 49 125-174 76-131 (225)
91 KOG0648 Predicted NUDIX hydrol 93.8 0.07 1.5E-06 48.2 3.8 93 78-174 69-171 (295)
92 PF14815 NUDIX_4: NUDIX domain 90.2 0.66 1.4E-05 34.2 4.7 42 127-170 2-47 (114)
93 COG4112 Predicted phosphoester 82.2 1.8 3.9E-05 37.0 3.8 53 120-173 59-125 (203)
94 KOG3069 Peroxisomal NUDIX hydr 71.4 9 0.0002 34.1 5.2 52 123-175 44-104 (246)
95 PF13869 NUDIX_2: Nucleotide h 59.1 13 0.00027 31.9 3.6 55 116-173 38-95 (188)
96 COG4119 Predicted NTP pyrophos 50.7 28 0.00062 28.9 4.3 33 144-177 35-67 (161)
97 PF00571 CBS: CBS domain CBS d 45.5 23 0.0005 22.2 2.5 21 89-109 31-51 (57)
98 PRK10880 adenine DNA glycosyla 43.3 30 0.00064 31.8 3.7 31 120-150 228-262 (350)
99 PF02743 Cache_1: Cache domain 42.6 24 0.00053 24.2 2.4 49 91-140 19-69 (81)
100 TIGR01084 mutY A/G-specific ad 42.0 36 0.00078 30.1 3.9 33 119-151 223-260 (275)
101 cd04643 CBS_pair_30 The CBS do 34.0 56 0.0012 22.5 3.2 21 89-109 93-113 (116)
102 cd04627 CBS_pair_14 The CBS do 33.3 43 0.00094 23.8 2.6 22 89-110 100-121 (123)
103 KOG4195 Transient receptor pot 31.6 73 0.0016 28.7 4.1 51 124-175 118-179 (275)
104 smart00359 PUA Putative RNA-bi 31.2 52 0.0011 22.1 2.6 17 88-104 34-50 (77)
105 cd04620 CBS_pair_7 The CBS dom 30.7 51 0.0011 22.9 2.5 21 89-109 92-112 (115)
106 cd04609 CBS_pair_PALP_assoc2 T 30.2 73 0.0016 21.6 3.2 20 90-109 88-107 (110)
107 cd04619 CBS_pair_6 The CBS dom 29.8 56 0.0012 23.0 2.6 21 89-109 91-111 (114)
108 cd04582 CBS_pair_ABC_OpuCA_ass 29.5 54 0.0012 22.3 2.5 21 89-109 83-103 (106)
109 cd04641 CBS_pair_28 The CBS do 29.4 56 0.0012 23.1 2.6 21 89-109 97-117 (120)
110 PRK13910 DNA glycosylase MutY; 29.2 64 0.0014 28.9 3.4 27 123-150 187-216 (289)
111 cd04601 CBS_pair_IMPDH This cd 28.9 61 0.0013 22.0 2.6 21 89-109 87-107 (110)
112 PF05198 IF3_N: Translation in 28.1 57 0.0012 23.7 2.4 25 89-113 13-37 (76)
113 cd04590 CBS_pair_CorC_HlyC_ass 28.0 64 0.0014 22.1 2.6 21 89-109 88-108 (111)
114 PF04099 Sybindin: Sybindin-li 27.8 71 0.0015 25.3 3.1 19 124-142 1-19 (142)
115 cd04606 CBS_pair_Mg_transporte 27.8 59 0.0013 22.5 2.5 21 89-109 85-105 (109)
116 cd04602 CBS_pair_IMPDH_2 This 27.2 54 0.0012 22.9 2.2 21 89-109 91-111 (114)
117 smart00116 CBS Domain in cysta 26.9 55 0.0012 18.2 1.8 21 89-109 24-44 (49)
118 KOG1689 mRNA cleavage factor I 26.6 1.1E+02 0.0024 26.6 4.2 51 118-175 66-123 (221)
119 PF11141 DUF2914: Protein of u 26.4 66 0.0014 22.6 2.5 15 90-104 47-61 (66)
120 PF08842 Mfa2: Fimbrillin-A as 26.3 71 0.0015 26.2 3.0 17 124-140 30-46 (283)
121 PF13585 CHU_C: C-terminal dom 26.1 61 0.0013 23.4 2.3 32 122-153 26-57 (87)
122 cd04583 CBS_pair_ABC_OpuCA_ass 25.7 68 0.0015 21.8 2.4 21 89-109 86-106 (109)
123 cd04596 CBS_pair_DRTGG_assoc T 25.6 69 0.0015 22.1 2.4 22 89-110 85-106 (108)
124 PF08918 PhoQ_Sensor: PhoQ Sen 25.5 84 0.0018 26.9 3.3 55 125-180 75-147 (180)
125 cd04607 CBS_pair_NTP_transfera 25.5 75 0.0016 22.0 2.6 21 89-109 90-110 (113)
126 cd04615 CBS_pair_2 The CBS dom 25.3 67 0.0014 22.1 2.3 21 89-109 90-110 (113)
127 cd04603 CBS_pair_KefB_assoc Th 25.2 73 0.0016 22.3 2.5 21 89-109 88-108 (111)
128 KOG1404 Alanine-glyoxylate ami 25.0 70 0.0015 30.8 3.0 46 119-169 34-79 (442)
129 PF13970 DUF4221: Domain of un 25.0 1.3E+02 0.0028 26.3 4.6 46 91-137 284-329 (333)
130 cd04642 CBS_pair_29 The CBS do 24.5 74 0.0016 22.7 2.5 21 89-109 103-123 (126)
131 cd04604 CBS_pair_KpsF_GutQ_ass 24.3 81 0.0017 21.6 2.6 22 89-110 91-112 (114)
132 COG5428 Uncharacterized conser 24.3 62 0.0014 23.8 2.0 19 85-103 27-45 (69)
133 PF04525 Tub_2: Tubby C 2; In 24.2 2.7E+02 0.0058 22.5 5.9 55 88-154 27-86 (187)
134 PF07494 Reg_prop: Two compone 24.1 82 0.0018 17.7 2.1 19 120-138 2-20 (24)
135 cd04585 CBS_pair_ACT_assoc2 Th 23.7 73 0.0016 21.9 2.3 21 89-109 99-119 (122)
136 COG3501 VgrG Uncharacterized p 22.7 69 0.0015 31.3 2.6 27 155-181 153-179 (550)
137 cd04611 CBS_pair_PAS_GGDEF_DUF 22.6 87 0.0019 21.3 2.5 20 90-109 89-108 (111)
138 cd04587 CBS_pair_CAP-ED_DUF294 22.0 73 0.0016 21.8 2.0 21 89-109 90-110 (113)
139 cd04600 CBS_pair_HPP_assoc Thi 22.0 88 0.0019 21.9 2.5 22 89-110 101-122 (124)
140 PF13994 PgaD: PgaD-like prote 21.5 82 0.0018 24.8 2.4 27 76-102 110-138 (138)
141 PRK11543 gutQ D-arabinose 5-ph 21.4 88 0.0019 26.9 2.7 23 89-111 295-317 (321)
142 cd04631 CBS_pair_18 The CBS do 21.1 98 0.0021 21.7 2.5 21 89-109 102-122 (125)
143 PTZ00314 inosine-5'-monophosph 21.1 1.1E+02 0.0023 29.3 3.5 24 88-111 192-215 (495)
144 cd04617 CBS_pair_4 The CBS dom 20.7 1.6E+02 0.0034 20.7 3.6 32 78-109 79-115 (118)
145 PF08915 tRNA-Thr_ED: Archaea- 20.6 46 0.00099 27.2 0.8 15 143-157 118-132 (138)
146 cd04614 CBS_pair_1 The CBS dom 20.4 99 0.0022 21.4 2.4 21 89-109 73-93 (96)
No 1
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=100.00 E-value=2e-34 Score=247.56 Aligned_cols=108 Identities=58% Similarity=0.819 Sum_probs=98.7
Q ss_pred cCCCCccccccHHHHHhhhcCeEEEeecCCcEEeeeechhchhhhccccCCccEEEEEEEEEcCCCcEEEEe-----ecC
Q 030138 69 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQV-----CLF 143 (182)
Q Consensus 69 ~~~~~~~~~~d~~Q~~~M~eE~vdLVDe~d~~iG~~~R~~~Hr~e~i~~~GLlHRAfsVfLFNs~GeLLLQq-----~~f 143 (182)
+|.|...++||+.|+++|++|.|+|||+||+++|.++|++||+++++.++|+|||||+|||||++|+||||| ++|
T Consensus 3 ~~~~~~~~~~~~~q~~~~~~e~v~lvDe~d~~~G~~~r~~~H~~~~~~~~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~ 82 (247)
T PLN02552 3 TMADATWAGMDAVQRRLMFEDECILVDENDNVVGHDSKYNCHLFEKIEPRGLLHRAFSVFLFNSKYELLLQQRAATKVTF 82 (247)
T ss_pred ccccccccccCHHHHhhhhcCeEEEEcCCCCEEeeeEHhhhhccccccCCCceEEEEEEEEEcCCCeEEEEEecCCCCCC
Confidence 577889999999999999889999999999999999999999865554489999999999999999999999 789
Q ss_pred CCceecccccCcCCCCC-----------------HHHHHHhhhhccCceE
Q 030138 144 CILWVKTCLSMDCHWVV-----------------QICGLTWEMTDSNILF 176 (182)
Q Consensus 144 PglWDnTcgGHplaGEs-----------------~~eAA~REl~ee~~~~ 176 (182)
||+||+||||||.+||+ ..+||+|||.||.+.-
T Consensus 83 Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~ 132 (247)
T PLN02552 83 PLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIP 132 (247)
T ss_pred CcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCC
Confidence 99999999999999854 5789999999998764
No 2
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=2.1e-31 Score=225.53 Aligned_cols=105 Identities=48% Similarity=0.621 Sum_probs=95.3
Q ss_pred CCCCccccccHHHHHhhhcCeEEEeecCCcEEeeeechhchhhhccccCCccEEEEEEEEEcCCCcEEEEe-----ecCC
Q 030138 70 GDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQV-----CLFC 144 (182)
Q Consensus 70 ~~~~~~~~~d~~Q~~~M~eE~vdLVDe~d~~iG~~~R~~~Hr~e~i~~~GLlHRAfsVfLFNs~GeLLLQq-----~~fP 144 (182)
|.++.++++|+.|.++|. |.|++||+||++||..+|++||.+|+|+ +|++|||||||+||++|+||||| .+||
T Consensus 2 ~~~~~~~~~d~~Q~~~l~-e~ci~VDenD~~IG~~tk~~cHl~eni~-kglLHRaFSVFlFns~~~lLlQqRS~~KitFP 79 (225)
T KOG0142|consen 2 MSETNLSGMDEQQVKLLA-ENCILVDENDNVIGAGTKKNCHLMENIE-KGLLHRAFSVFLFNSKNELLLQQRSDEKITFP 79 (225)
T ss_pred CccccccccCHHHHHHHh-hheEeeccccccccchhhhhhhcchhHH-hhhhhheeeEEEecCcchHHHhhhcccccccc
Confidence 567899999999999996 6999999999999999999999999999 79999999999999999999999 8899
Q ss_pred CceecccccCcCCCCC---------HHHHHHhhhhccCceE
Q 030138 145 ILWVKTCLSMDCHWVV---------QICGLTWEMTDSNILF 176 (182)
Q Consensus 145 glWDnTcgGHplaGEs---------~~eAA~REl~ee~~~~ 176 (182)
|+|+|||||||++... ...||+|-|+.|.+-+
T Consensus 80 ~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp 120 (225)
T KOG0142|consen 80 GLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIP 120 (225)
T ss_pred chhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCC
Confidence 9999999999994432 3468999999887643
No 3
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=99.94 E-value=2.2e-27 Score=197.22 Aligned_cols=85 Identities=25% Similarity=0.327 Sum_probs=79.2
Q ss_pred hcCeEEEeecCCcEEeeeechhchhhhccccCCccEEEEEEEEEcCCCcEEEEe-----ecCCCceecccccCcCCCCCH
Q 030138 87 FEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQV-----CLFCILWVKTCLSMDCHWVVQ 161 (182)
Q Consensus 87 ~eE~vdLVDe~d~~iG~~~R~~~Hr~e~i~~~GLlHRAfsVfLFNs~GeLLLQq-----~~fPglWDnTcgGHplaGEs~ 161 (182)
.+|.|+++|++|+++|.++|..||.|+.+. +|||||+||||.+|+||||| ++|||.|||||||||+.||+.
T Consensus 2 ~~e~vill~~~d~~~G~~~k~~~Ht~d~~~----LHrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~ 77 (185)
T COG1443 2 MTEDVILLNDDDVPTGTAEKLAAHTGDTPR----LHRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESN 77 (185)
T ss_pred CceeEEEECCCCCccccchhhhhhccccHH----HHhhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCch
Confidence 368999999999999999999999974442 89999999999999999999 899999999999999999999
Q ss_pred HHHHHhhhhccCce
Q 030138 162 ICGLTWEMTDSNIL 175 (182)
Q Consensus 162 ~eAA~REl~ee~~~ 175 (182)
.+||+|-+.+|++.
T Consensus 78 ~~A~~rRl~~ELGi 91 (185)
T COG1443 78 EDAARRRLAYELGI 91 (185)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999998764
No 4
>PLN02791 Nudix hydrolase homolog
Probab=99.92 E-value=9.4e-26 Score=218.64 Aligned_cols=84 Identities=18% Similarity=0.176 Sum_probs=79.6
Q ss_pred hhcCeEEEeecCCcEEee-eechhchhhhccccCCccEEEEEEEEEcC-CCcEEEEe-----ecCCCceecccccCcCCC
Q 030138 86 MFEDECILVDENDRVVGH-ENKYNCHLMEKIESLNLLHRAFSVFLFNS-KYELLLQV-----CLFCILWVKTCLSMDCHW 158 (182)
Q Consensus 86 M~eE~vdLVDe~d~~iG~-~~R~~~Hr~e~i~~~GLlHRAfsVfLFNs-~GeLLLQq-----~~fPglWDnTcgGHplaG 158 (182)
|.+|+|||||++|+++|. ..|.+||+ +|+|||||||||||. +|+||||| ++|||+||+||||||.+|
T Consensus 1 ~~eE~~DI~De~g~~~G~~~~R~evH~------~Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aG 74 (770)
T PLN02791 1 MMEEHLDVLTAAGEKTGVSKPRGEVHR------DGDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAG 74 (770)
T ss_pred CCceEEEEECCCCCCCCccccHHhhcc------CCCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCC
Confidence 457999999999999999 69999998 899999999999997 69999999 789999999999999999
Q ss_pred CCHHHHHHhhhhccCce
Q 030138 159 VVQICGLTWEMTDSNIL 175 (182)
Q Consensus 159 Es~~eAA~REl~ee~~~ 175 (182)
|++++||.|||+||.++
T Consensus 75 Es~~eAA~REL~EELGI 91 (770)
T PLN02791 75 DTSLLSAQRELEEELGI 91 (770)
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 99999999999999885
No 5
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.91 E-value=6.4e-25 Score=175.69 Aligned_cols=82 Identities=7% Similarity=-0.062 Sum_probs=75.8
Q ss_pred cCeEEEeecCCcEEeeeechhchhhhccccCCccEEEEEEE--EEcCC--CcEEEEe-----ecCCCceecccccCcCCC
Q 030138 88 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF--LFNSK--YELLLQV-----CLFCILWVKTCLSMDCHW 158 (182)
Q Consensus 88 eE~vdLVDe~d~~iG~~~R~~~Hr~e~i~~~GLlHRAfsVf--LFNs~--GeLLLQq-----~~fPglWDnTcgGHplaG 158 (182)
+|+++|||++|+++|...|..+|+ +|++||+|||+ ++|++ |+||||| ++|||+||++||||+.+|
T Consensus 4 ~E~~~v~d~~~~~~~~~~r~~~~~------~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~g 77 (180)
T cd03676 4 NELYAVYGPFGEPLFEIERAASRL------FGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHG 77 (180)
T ss_pred CcceeeECCCCCEeEEEEeccccc------CCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCC
Confidence 589999999999999999999998 89999999976 55776 8999999 679999999999999999
Q ss_pred CCHHHHHHhhhhccCce
Q 030138 159 VVQICGLTWEMTDSNIL 175 (182)
Q Consensus 159 Es~~eAA~REl~ee~~~ 175 (182)
|++.+||.|||.||-++
T Consensus 78 E~~~~aA~REl~EE~Gl 94 (180)
T cd03676 78 EGPEETLVKECDEEAGL 94 (180)
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 99999999999999653
No 6
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.90 E-value=3.2e-24 Score=173.42 Aligned_cols=86 Identities=21% Similarity=0.259 Sum_probs=79.5
Q ss_pred hhhcCeEEEeecCCcEEeeeechhchhhhccccCCccEEEEEEEEEcCCCcEEEEe-----ecCCCceecccccCcCCCC
Q 030138 85 LMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQV-----CLFCILWVKTCLSMDCHWV 159 (182)
Q Consensus 85 ~M~eE~vdLVDe~d~~iG~~~R~~~Hr~e~i~~~GLlHRAfsVfLFNs~GeLLLQq-----~~fPglWDnTcgGHplaGE 159 (182)
+|..|+||+||+||+++|.++|+++|+ ++|++|+||+|+|+|++|++|||| ..|||+|++++|||+.+||
T Consensus 2 ~~~~E~~~~vd~~~~~~g~~~r~~~~~-----~~~~~h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GE 76 (184)
T PRK03759 2 MMETELVVLLDEQGVPTGTAEKAAAHT-----ADTPLHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGE 76 (184)
T ss_pred CCCceeEEEECCCCCCcccccHHHHHh-----cCCCeeeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCC
Confidence 355689999999999999999999996 279999999999999999999998 4799999999999999999
Q ss_pred CHHHHHHhhhhccCce
Q 030138 160 VQICGLTWEMTDSNIL 175 (182)
Q Consensus 160 s~~eAA~REl~ee~~~ 175 (182)
+.++||+|||.||-++
T Consensus 77 t~~~aa~REl~EEtGl 92 (184)
T PRK03759 77 SLEDAVIRRCREELGV 92 (184)
T ss_pred CHHHHHHHHHHHHhCC
Confidence 9999999999999654
No 7
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.89 E-value=1.6e-23 Score=165.91 Aligned_cols=82 Identities=41% Similarity=0.513 Sum_probs=77.8
Q ss_pred cCeEEEeecCCcEEeeeechhchhhhccccCCcc-EEEEEEEEEcCCCcEEEEe-----ecCCCceecccccCcCCCCCH
Q 030138 88 EDECILVDENDRVVGHENKYNCHLMEKIESLNLL-HRAFSVFLFNSKYELLLQV-----CLFCILWVKTCLSMDCHWVVQ 161 (182)
Q Consensus 88 eE~vdLVDe~d~~iG~~~R~~~Hr~e~i~~~GLl-HRAfsVfLFNs~GeLLLQq-----~~fPglWDnTcgGHplaGEs~ 161 (182)
+|+|++||++++++|.++|+.+|+ +|++ |++|+|+|+|++|++|||| ..|||+|++.+|||+.+||+.
T Consensus 1 ~e~~~~~d~~~~~~g~~~r~~~~~------~~~~~~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~ 74 (165)
T cd02885 1 EELVILVDEDDNPIGTAEKLEAHL------KGTLLHRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGV 74 (165)
T ss_pred CcEEEEECCCCCCccccCHHHHhh------cCCcceeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCH
Confidence 589999999999999999999998 7888 9999999999999999998 579999999999999999999
Q ss_pred HHHHHhhhhccCce
Q 030138 162 ICGLTWEMTDSNIL 175 (182)
Q Consensus 162 ~eAA~REl~ee~~~ 175 (182)
++||.||+.||-++
T Consensus 75 ~eaa~REl~EEtGl 88 (165)
T cd02885 75 KDAAQRRLREELGI 88 (165)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999554
No 8
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.89 E-value=1.9e-23 Score=169.17 Aligned_cols=89 Identities=18% Similarity=0.106 Sum_probs=84.2
Q ss_pred HHHHhhhcCeEEEeecCCcEEeeeechhchhhhccccCCccEEEEEEEEEcCCCcEEEEe-----ecCCCceecccccCc
Q 030138 81 VQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQV-----CLFCILWVKTCLSMD 155 (182)
Q Consensus 81 ~Q~~~M~eE~vdLVDe~d~~iG~~~R~~~Hr~e~i~~~GLlHRAfsVfLFNs~GeLLLQq-----~~fPglWDnTcgGHp 155 (182)
+|++.|..|+|+|||+||+++|..+|..+|+ +|+.|+++.|+|+|++|++|||+ ..|||+|+..+|||+
T Consensus 2 ~~~~~~~~e~~~~~d~~~~~~g~~~~~~~~~------~~~~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~v 75 (180)
T PRK15393 2 EQRRLASTEWVDIVNENNEVIAQASREQMRA------QCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVV 75 (180)
T ss_pred CCCCCCCceEEEEECCCCCEeeEEEHHHHhh------CCCceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcC
Confidence 5888999999999999999999999999998 89999999999999999999998 468999999999999
Q ss_pred CCCCCHHHHHHhhhhccCce
Q 030138 156 CHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 156 laGEs~~eAA~REl~ee~~~ 175 (182)
..||+.++||.|||.||-++
T Consensus 76 e~GEs~~eAA~REL~EEtGl 95 (180)
T PRK15393 76 QAGEQLLESARREAEEELGI 95 (180)
T ss_pred CCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999665
No 9
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.89 E-value=2.9e-23 Score=164.29 Aligned_cols=78 Identities=37% Similarity=0.511 Sum_probs=72.5
Q ss_pred EEEeecCCcEEeeeechhchhhhccccCCccEEEEEEEEEcCCCcEEEEe-----ecCCCceecccccCcCCCCCHHHHH
Q 030138 91 CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQV-----CLFCILWVKTCLSMDCHWVVQICGL 165 (182)
Q Consensus 91 vdLVDe~d~~iG~~~R~~~Hr~e~i~~~GLlHRAfsVfLFNs~GeLLLQq-----~~fPglWDnTcgGHplaGEs~~eAA 165 (182)
+++||++|+++|...|+.+|+ ++|++||+++|+|+|.+|++|||| ..|||+|++++||||..|| .+||
T Consensus 1 ~~~~d~~~~~~g~~~r~~~~~-----~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa 73 (158)
T TIGR02150 1 VILVDENDNPIGTASKAEVHL-----QETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAA 73 (158)
T ss_pred CEEECCCCCEeeeeeHHHhhh-----cCCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHH
Confidence 589999999999999999995 269999999999999999999998 4799999999999999999 4999
Q ss_pred HhhhhccCce
Q 030138 166 TWEMTDSNIL 175 (182)
Q Consensus 166 ~REl~ee~~~ 175 (182)
.|||.||-++
T Consensus 74 ~REl~EE~Gl 83 (158)
T TIGR02150 74 IRRLREELGI 83 (158)
T ss_pred HHHHHHHHCC
Confidence 9999999655
No 10
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=3e-16 Score=120.94 Aligned_cols=55 Identities=18% Similarity=0.141 Sum_probs=51.8
Q ss_pred cEEEEEEEEEcCC---CcEEEEe-----ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 121 LHRAFSVFLFNSK---YELLLQV-----CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 121 lHRAfsVfLFNs~---GeLLLQq-----~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
|||||+|||+|.+ |++|+|| ..|||+|++++|||+..||+..+||.|||.||-++
T Consensus 1 ~h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl 63 (144)
T cd04692 1 WHRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGL 63 (144)
T ss_pred CceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCC
Confidence 7999999999998 9999998 57999999999999999999999999999999765
No 11
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=1.5e-14 Score=109.17 Aligned_cols=53 Identities=17% Similarity=0.079 Sum_probs=49.6
Q ss_pred EEEEEEEEcCCCcEEEEe-----ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 123 RAFSVFLFNSKYELLLQV-----CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 123 RAfsVfLFNs~GeLLLQq-----~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
|||+|+|+|++|++|||| ..+||+|+++.|||+..||+..+||+||+.||-++
T Consensus 1 ~~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl 58 (126)
T cd04697 1 RATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGI 58 (126)
T ss_pred CeEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCC
Confidence 689999999999999998 46899999999999999999999999999999764
No 12
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.39 E-value=3.8e-13 Score=100.76 Aligned_cols=52 Identities=25% Similarity=0.121 Sum_probs=48.0
Q ss_pred EEEEEEEEcCCCcEEEEe-----ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 123 RAFSVFLFNSKYELLLQV-----CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 123 RAfsVfLFNs~GeLLLQq-----~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
++|.|+++|.+|++|||| ..+||+|++.+|||+..||+. +||+||+.||-++
T Consensus 1 ~~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl 57 (127)
T cd04693 1 LVVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGL 57 (127)
T ss_pred CeEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCC
Confidence 579999999999999997 358999999999999999999 9999999999765
No 13
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.31 E-value=2.8e-12 Score=98.07 Aligned_cols=54 Identities=15% Similarity=-0.059 Sum_probs=49.3
Q ss_pred cEEEEEEEEEcCCCcEEEEe-----ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 121 LHRAFSVFLFNSKYELLLQV-----CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 121 lHRAfsVfLFNs~GeLLLQq-----~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
.+|+|.++|++.+|++|||| ..|||+|++. |||+.+||+..+||.|||.||-++
T Consensus 2 ~~r~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lP-gG~ve~gEs~~~aa~REl~EEtGl 60 (141)
T PRK15472 2 RQRTIVCPLIQNDGAYLLCKMADDRGVFPGQWALS-GGGVEPGERIEEALRREIREELGE 60 (141)
T ss_pred cceeEEEEEEecCCEEEEEEecccCCCCCCceeCC-cccCCCCCCHHHHHHHHHHHHHCC
Confidence 36899999999999999988 4699999999 688999999999999999999874
No 14
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.13 E-value=6.4e-11 Score=86.72 Aligned_cols=55 Identities=20% Similarity=0.077 Sum_probs=48.8
Q ss_pred cEEEEEEEEEcCCCcEEEEe---e--cCCCceecccccCcCCCCCHHHHHHhhhhccCceE
Q 030138 121 LHRAFSVFLFNSKYELLLQV---C--LFCILWVKTCLSMDCHWVVQICGLTWEMTDSNILF 176 (182)
Q Consensus 121 lHRAfsVfLFNs~GeLLLQq---~--~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~~ 176 (182)
||+++.++|+|++|++||+| . .+|++|.+. ||++..||+..+||+||+.||-++-
T Consensus 1 ~~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~p-gG~i~~~E~~~~aa~REl~EE~g~~ 60 (134)
T PF00293_consen 1 WRRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELP-GGGIEPGESPEEAARRELKEETGLD 60 (134)
T ss_dssp EEEEEEEEEEETTTEEEEEEESTTSSSSTTEEESS-EEEECTTSHHHHHHHHHHHHHHSEE
T ss_pred CCCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecc-eeeEEcCCchhhhHHhhhhhcccce
Confidence 69999999999999988887 2 378999995 8999999999999999999997554
No 15
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.08 E-value=1.8e-10 Score=85.99 Aligned_cols=52 Identities=15% Similarity=0.017 Sum_probs=46.2
Q ss_pred EEEEEEEEEcCCCcEEEEe------ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 122 HRAFSVFLFNSKYELLLQV------CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 122 HRAfsVfLFNs~GeLLLQq------~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
|.++.++++|+ |++|||| ..|||+|+.. ||++..||+..+||.||+.||-++
T Consensus 1 ~~v~~~~~~~~-g~vLl~~r~~~~~~~~~g~w~~P-gG~ve~gE~~~~aa~RE~~EE~Gl 58 (122)
T cd04682 1 SGVALALLIGD-GRLLLQLRDDKPGIPYPGHWDLP-GGHREGGETPLECVLRELLEEIGL 58 (122)
T ss_pred CceEEEEEEcC-CEEEEEEccCCCCCCCCCcEeCC-CccccCCCCHHHHHHHHHHHHhCC
Confidence 67888888887 9999988 3699999976 899999999999999999999765
No 16
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.05 E-value=2.8e-10 Score=89.78 Aligned_cols=51 Identities=20% Similarity=0.108 Sum_probs=46.5
Q ss_pred EEEEEEEEcCCCcEEEEe-----ecCCCceecccccCcCCCCCHHHHHHhhhhccCc
Q 030138 123 RAFSVFLFNSKYELLLQV-----CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNI 174 (182)
Q Consensus 123 RAfsVfLFNs~GeLLLQq-----~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~ 174 (182)
.+|+|+|+|.+|++|||| ..|||+|++. |||+..||+.++||+||+.||-+
T Consensus 2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~P-gG~v~~~E~~~~aa~RE~~EE~g 57 (143)
T cd04694 2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPP-GGHVELGENLLEAGLRELNEETG 57 (143)
T ss_pred cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECc-ccccCCCCCHHHHHHHHHHHHHC
Confidence 468999999999999998 3799999998 79999999999999999999944
No 17
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.05 E-value=3e-10 Score=84.80 Aligned_cols=51 Identities=18% Similarity=-0.079 Sum_probs=46.1
Q ss_pred EEEEEEEcCCCcEEEEe---ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 124 AFSVFLFNSKYELLLQV---CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 124 AfsVfLFNs~GeLLLQq---~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
||.|+|+|++|++||+| ..+||+|+.- |||+..||+..+||.||+.||-++
T Consensus 3 av~~~i~~~~~~vLL~~r~~~~~~~~w~~P-gG~ve~gEs~~~aa~RE~~EEtGl 56 (130)
T cd04681 3 AVGVLILNEDGELLVVRRAREPGKGTLDLP-GGFVDPGESAEEALIREIREETGL 56 (130)
T ss_pred eEEEEEEcCCCcEEEEEecCCCCCCcEeCC-ceeecCCCCHHHHHHHHHHHHhCC
Confidence 78999999999999988 3478999995 999999999999999999999764
No 18
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.02 E-value=3.5e-10 Score=84.69 Aligned_cols=53 Identities=13% Similarity=0.019 Sum_probs=47.0
Q ss_pred EEEEEEEEcC--CCcEEEEe--ecCCCceecccccCcCCCCCHHHHHHhhhhccCceE
Q 030138 123 RAFSVFLFNS--KYELLLQV--CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNILF 176 (182)
Q Consensus 123 RAfsVfLFNs--~GeLLLQq--~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~~ 176 (182)
|.+.|++||. +|++||+| ..+||+|+. .|||+..||+..+||.||+.||-++-
T Consensus 2 ~~~~v~~~~~~~~~~vLL~~r~~~~~~~w~~-PgG~ve~~Es~~~aa~RE~~EE~Gl~ 58 (129)
T cd04664 2 RSVLVVPYRLTGEGRVLLLRRSDKYAGFWQS-VTGGIEDGESPAEAARREVAEETGLD 58 (129)
T ss_pred cEEEEEEEEeCCCCEEEEEEeCCCCCCcccc-cCcccCCCCCHHHHHHHHHHHHHCCC
Confidence 6799999999 99999987 338999996 69999999999999999999997653
No 19
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.00 E-value=6.3e-10 Score=83.12 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=47.4
Q ss_pred EEEEEEEEcCCCcEEEEe-ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 123 RAFSVFLFNSKYELLLQV-CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 123 RAfsVfLFNs~GeLLLQq-~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
.++.++|+|++|++||+| ..|+|+|.+- |||+..||+..+||.||+.||-++
T Consensus 3 ~~v~~~i~~~~~~iLL~r~~~~~~~w~lP-GG~ve~gEs~~~aa~REl~EEtGl 55 (125)
T cd04696 3 VTVGALIYAPDGRILLVRTTKWRGLWGVP-GGKVEWGETLEEALKREFREETGL 55 (125)
T ss_pred cEEEEEEECCCCCEEEEEccCCCCcEeCC-ceeccCCCCHHHHHHHHHHHHhCC
Confidence 468899999999999998 5689999986 999999999999999999999775
No 20
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.00 E-value=7.7e-10 Score=82.66 Aligned_cols=53 Identities=17% Similarity=0.006 Sum_probs=47.7
Q ss_pred EEEEEEEEEcCCCcEEEEe---ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 122 HRAFSVFLFNSKYELLLQV---CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 122 HRAfsVfLFNs~GeLLLQq---~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
..++.++|+|.+|++||+| ..++|+|+.- |||+..||+..+||.||+.||-+.
T Consensus 2 ~~~v~~ii~~~~~~iLl~~r~~~~~~~~w~~P-GG~ve~gEt~~~Aa~REl~EE~Gl 57 (129)
T cd04678 2 RVGVGVFVLNPKGKVLLGKRKGSHGAGTWALP-GGHLEFGESFEECAAREVLEETGL 57 (129)
T ss_pred ceEEEEEEECCCCeEEEEeccCCCCCCeEECC-cccccCCCCHHHHHHHHHHHHhCC
Confidence 4579999999999999998 2489999996 899999999999999999999763
No 21
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=98.97 E-value=8.1e-10 Score=86.17 Aligned_cols=52 Identities=10% Similarity=-0.132 Sum_probs=47.2
Q ss_pred EEEEEEEEEcCCCcEEEEe---ecCCCceecccccCcCCCCCHHHHHHhhhhccCc
Q 030138 122 HRAFSVFLFNSKYELLLQV---CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNI 174 (182)
Q Consensus 122 HRAfsVfLFNs~GeLLLQq---~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~ 174 (182)
-.++.++|+|.+|++||+| ..+||+|+.- ||++..||+..+||+||++||-+
T Consensus 12 ~v~v~~vI~~~~g~vLl~~R~~~p~~g~w~lP-GG~ve~gEs~~~aa~RE~~EE~G 66 (144)
T cd03430 12 LVSIDLIVENEDGQYLLGKRTNRPAQGYWFVP-GGRIRKNETLTEAFERIAKDELG 66 (144)
T ss_pred eEEEEEEEEeCCCeEEEEEccCCCCCCcEECC-CceecCCCCHHHHHHHHHHHHHC
Confidence 3489999999999999987 4589999988 99999999999999999999955
No 22
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=98.97 E-value=9.9e-10 Score=84.63 Aligned_cols=54 Identities=7% Similarity=-0.025 Sum_probs=46.7
Q ss_pred cEEEEEEEEEcCCCcEEEEe-ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 121 LHRAFSVFLFNSKYELLLQV-CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 121 lHRAfsVfLFNs~GeLLLQq-~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
.+-++.++++|.+|++||+| ...||.|+. .|||+..||+..+||+|||.||-++
T Consensus 6 ~~~~v~~vi~~~~~~vLl~~r~~~~~~W~l-PgG~ve~gEs~~~aa~REl~EEtGl 60 (148)
T PRK09438 6 RPVSVLVVIYTPDLGVLMLQRADDPDFWQS-VTGSLEEGETPAQTAIREVKEETGI 60 (148)
T ss_pred CceEEEEEEEeCCCeEEEEEecCCCCcEeC-CcccCCCCCCHHHHHHHHHHHHhCc
Confidence 45679999999999988876 446899997 5899999999999999999999554
No 23
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=98.97 E-value=9.9e-10 Score=86.64 Aligned_cols=53 Identities=13% Similarity=-0.122 Sum_probs=47.0
Q ss_pred EEEEEEEEEcCC--CcEEEEe-----ecCCCceecccccCcCCC-CCHHHHHHhhhhccCce
Q 030138 122 HRAFSVFLFNSK--YELLLQV-----CLFCILWVKTCLSMDCHW-VVQICGLTWEMTDSNIL 175 (182)
Q Consensus 122 HRAfsVfLFNs~--GeLLLQq-----~~fPglWDnTcgGHplaG-Es~~eAA~REl~ee~~~ 175 (182)
|.||.|+|+|.+ +++|||| ..+||+|+.. |||+..| |+..+||.||+.||-++
T Consensus 2 ~~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lP-GG~ve~gdEs~~eaa~REl~EEtGl 62 (157)
T cd03426 2 RAAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFP-GGKVDPGDEDPVATALREAEEEIGL 62 (157)
T ss_pred ceEEEEEEEeCCCceEEEEEEcccccccCCCcEECC-CCCcCCCcCCHHHHHHHHHHHHhCC
Confidence 789999999987 5899887 3589999986 8999999 99999999999999654
No 24
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=98.93 E-value=1.9e-09 Score=82.71 Aligned_cols=53 Identities=15% Similarity=0.018 Sum_probs=47.3
Q ss_pred EEEEEEEEEcCC-CcEEEEeecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 122 HRAFSVFLFNSK-YELLLQVCLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 122 HRAfsVfLFNs~-GeLLLQq~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
|++++++|||.+ |++||.|....|.|.. .|||+..||+..+||.|||.||-++
T Consensus 2 ~~~~~~~v~~~~~~~vLLv~r~~~~~w~l-PgG~ve~gE~~~~aa~REl~EEtGl 55 (138)
T cd03674 2 HFTASAFVVNPDRGKVLLTHHRKLGSWLQ-PGGHIDPDESLLEAALRELREETGI 55 (138)
T ss_pred cEEEEEEEEeCCCCeEEEEEEcCCCcEEC-CceecCCCCCHHHHHHHHHHHHHCC
Confidence 999999999998 9988877334799998 5999999999999999999999765
No 25
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.93 E-value=1.6e-09 Score=84.18 Aligned_cols=52 Identities=15% Similarity=-0.044 Sum_probs=46.3
Q ss_pred EEEEEEEEcCCCcEEEEe--e---cCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 123 RAFSVFLFNSKYELLLQV--C---LFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 123 RAfsVfLFNs~GeLLLQq--~---~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
|+|.|+|||.+|++|+|| . .++++|+. .|||+..||+..+||+||+.||-++
T Consensus 1 ~~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~-PgG~ve~gE~~~~a~~Re~~EE~G~ 57 (133)
T cd04685 1 RAARVVLLDPDDRVLLLRGDDPDSPGPDWWFT-PGGGVEPGESPEQAARRELREETGI 57 (133)
T ss_pred CeEEEEEEcCCCeEEEEEEeCCCCCCCCEEEC-CcCCCCCCCCHHHHHHHHHHHHHCC
Confidence 689999999999999998 2 27889999 5899999999999999999999553
No 26
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=98.92 E-value=1.7e-09 Score=85.65 Aligned_cols=55 Identities=9% Similarity=-0.093 Sum_probs=50.1
Q ss_pred ccEEEEEEEEEcCCCcEEEEe-ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 120 LLHRAFSVFLFNSKYELLLQV-CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 120 LlHRAfsVfLFNs~GeLLLQq-~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
-+|.++.++|+|.+|++||+| ...|+.|++. |||+..||+..+||.||+.||-++
T Consensus 6 ~~~~~v~~~i~~~~g~vLL~~r~~~~~~w~~P-~G~~~~gE~~~~aa~REl~EEtG~ 61 (156)
T PRK00714 6 GYRPNVGIILLNRQGQVFWGRRIGQGHSWQFP-QGGIDPGETPEQAMYRELYEEVGL 61 (156)
T ss_pred CCCCeEEEEEEecCCEEEEEEEcCCCCeEECC-cccCCCCcCHHHHHHHHHHHHhCC
Confidence 388899999999999999998 4458999999 799999999999999999999775
No 27
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.92 E-value=2.1e-09 Score=80.16 Aligned_cols=53 Identities=11% Similarity=-0.041 Sum_probs=47.5
Q ss_pred EEEEEEEEEcCCCcEEEEe---ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 122 HRAFSVFLFNSKYELLLQV---CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 122 HRAfsVfLFNs~GeLLLQq---~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
|.++.++|+|.+|++||+| ..++|.|+.- |||+..||+..+||.||+.||-+.
T Consensus 2 ~~~~~~~i~~~~~~vLL~~r~~~~~~~~w~lP-gG~ve~gEt~~eaa~RE~~EEtGl 57 (125)
T cd04679 2 RVGCGAAILRDDGKLLLVKRLRAPEAGHWGIP-GGKVDWMEAVEDAVVREIEEETGL 57 (125)
T ss_pred ceEEEEEEECCCCEEEEEEecCCCCCCeEeCC-eeeccCCCCHHHHHHHHHHHHHCC
Confidence 5679999999999999987 3468999997 999999999999999999999764
No 28
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.91 E-value=2.3e-09 Score=78.39 Aligned_cols=50 Identities=8% Similarity=-0.126 Sum_probs=45.1
Q ss_pred EEEEEEEcCCCcEEEEeecCCCceecccccCcCCCCCHHHHHHhhhhccCc
Q 030138 124 AFSVFLFNSKYELLLQVCLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNI 174 (182)
Q Consensus 124 AfsVfLFNs~GeLLLQq~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~ 174 (182)
+++++|+|.+|++||+|..+++.|+.. ||++..||+..+||+||+.||-+
T Consensus 2 ~~~~~i~~~~~~vLL~~r~~~~~w~~P-gG~ve~gEt~~~aa~REl~EEtG 51 (120)
T cd04680 2 GARAVVTDADGRVLLVRHTYGPGWYLP-GGGLERGETFAEAARRELLEELG 51 (120)
T ss_pred ceEEEEECCCCeEEEEEECCCCcEeCC-CCcCCCCCCHHHHHHHHHHHHHC
Confidence 578999999999999995566799997 89999999999999999999954
No 29
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=98.90 E-value=2.7e-09 Score=86.18 Aligned_cols=55 Identities=11% Similarity=-0.130 Sum_probs=49.3
Q ss_pred CccEEEEEEEEEcCCCcEEEEe---ecCCCceecccccCcCCCCCHHHHHHhhhhccCc
Q 030138 119 NLLHRAFSVFLFNSKYELLLQV---CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNI 174 (182)
Q Consensus 119 GLlHRAfsVfLFNs~GeLLLQq---~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~ 174 (182)
..++-++.++|+|.+|++||+| ..+||+|... ||++..||+..+||+||++||-+
T Consensus 14 ~~~~~~v~~vI~~~~g~VLL~kR~~~~~~g~W~lP-GG~VE~GEt~~~Aa~REl~EEtG 71 (159)
T PRK15434 14 STPLISLDFIVENSRGEFLLGKRTNRPAQGYWFVP-GGRVQKDETLEAAFERLTMAELG 71 (159)
T ss_pred CCceEEEEEEEECCCCEEEEEEccCCCCCCcEECC-ceecCCCCCHHHHHHHHHHHHHC
Confidence 5567799999999999999977 4678999998 99999999999999999999943
No 30
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=98.90 E-value=2.5e-09 Score=82.90 Aligned_cols=55 Identities=13% Similarity=-0.071 Sum_probs=48.8
Q ss_pred cEEEEEEEEEcCCCcEEEEe-ecCCCceecccccCcCCCCCHHHHHHhhhhccCceE
Q 030138 121 LHRAFSVFLFNSKYELLLQV-CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNILF 176 (182)
Q Consensus 121 lHRAfsVfLFNs~GeLLLQq-~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~~ 176 (182)
+|.++.++|+|.+|++||+| ...|++|+.. |||+.+||+..+||.||+.||-++-
T Consensus 2 ~~~~v~~ii~~~~~~vLL~~r~~~~~~W~~P-gG~~e~gE~~~~aA~REv~EEtGl~ 57 (147)
T cd03671 2 YRPNVGVVLFNEDGKVFVGRRIDTPGAWQFP-QGGIDEGEDPEQAALRELEEETGLD 57 (147)
T ss_pred CCceEEEEEEeCCCEEEEEEEcCCCCCEECC-cCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 57899999999999999998 5566999987 7889999999999999999997653
No 31
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=98.89 E-value=2.2e-09 Score=80.93 Aligned_cols=53 Identities=9% Similarity=-0.086 Sum_probs=47.0
Q ss_pred EEEEEEEEEcCCCcEEEEe----ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 122 HRAFSVFLFNSKYELLLQV----CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 122 HRAfsVfLFNs~GeLLLQq----~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
|+++.|+++|++|++||.+ ...+++|+.- ||++..||+..+||.||+.||-++
T Consensus 2 ~~~v~v~~~~~~~~iLl~~~~~~~~~~~~w~~P-gG~ve~gEs~~~aa~RE~~EE~Gl 58 (137)
T cd03424 2 PDAVAVLPYDDDGKVVLVRQYRPPVGGWLLELP-AGLIDPGEDPEEAARRELEEETGY 58 (137)
T ss_pred CCEEEEEEEcCCCeEEEEEeeecCCCCEEEEeC-CccCCCCCCHHHHHHHHHHHHHCC
Confidence 7899999999999988865 3468899986 899999999999999999999764
No 32
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=98.88 E-value=3.5e-09 Score=82.08 Aligned_cols=55 Identities=16% Similarity=0.042 Sum_probs=48.3
Q ss_pred ccEEEEEEEEEcCCCcEEEEe---ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 120 LLHRAFSVFLFNSKYELLLQV---CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 120 LlHRAfsVfLFNs~GeLLLQq---~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
+.=+|+.++|+|.+|++||+| ...+|.|+.. |||+.+||+.++||+|||.||-++
T Consensus 11 ~~~~av~~vv~~~~~~vLL~~r~~~~~~~~w~lP-gG~ve~gEt~~~aa~REl~EEtGl 68 (142)
T cd04700 11 VEARAAGAVILNERNDVLLVQEKGGPKKGLWHIP-SGAVEDGEFPQDAAVREACEETGL 68 (142)
T ss_pred eeeeeEEEEEEeCCCcEEEEEEcCCCCCCeEECC-ceecCCCCCHHHHHHHHHHHhhCc
Confidence 467899999999999977766 3468999999 799999999999999999999764
No 33
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.87 E-value=4.2e-09 Score=78.70 Aligned_cols=53 Identities=13% Similarity=-0.014 Sum_probs=46.3
Q ss_pred EEEEEEEEEcCCCcEEEEe--ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 122 HRAFSVFLFNSKYELLLQV--CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 122 HRAfsVfLFNs~GeLLLQq--~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
+-++.++|+|.+|++||.| ..++|+|++- |||+..||+..+||.||+.||-++
T Consensus 2 ~~~~~~~v~~~~~~vLl~~r~~~~~~~w~~P-GG~ve~gEt~~~aa~RE~~EE~Gl 56 (127)
T cd04670 2 TVGVGGLVLNEKNEVLVVQERNKTPNGWKLP-GGLVDPGEDIFDGAVREVLEETGI 56 (127)
T ss_pred eeEEEEEEEcCCCeEEEEEccCCCCCcEECC-CccCCCCCCHHHHHHHHHHHHHCC
Confidence 3468889999999988876 3379999997 999999999999999999999764
No 34
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.86 E-value=4.8e-09 Score=77.13 Aligned_cols=51 Identities=12% Similarity=-0.064 Sum_probs=44.6
Q ss_pred EEEEEEEcCCCcEEEEe-----ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 124 AFSVFLFNSKYELLLQV-----CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 124 AfsVfLFNs~GeLLLQq-----~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
++.++|+|.+|++||+| ..++|+|+.- |||+..||+..+||.||+.||-+.
T Consensus 3 ~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~P-gG~ve~gEs~~~aa~RE~~EE~Gl 58 (129)
T cd04699 3 AVAALIVKDVGRILILKRSKDERTAPGKWELP-GGKVEEGETFEEALKREVYEETGL 58 (129)
T ss_pred eEEEEEECCCCcEEEEEecCCCCCCCCcCcCC-ccCccCCCCHHHHHHHHHHHhhCc
Confidence 57888999889999987 2379999997 899999999999999999998754
No 35
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.86 E-value=4e-09 Score=77.68 Aligned_cols=50 Identities=18% Similarity=0.032 Sum_probs=43.1
Q ss_pred EEEEEEEcCCCcEEEEe----ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 124 AFSVFLFNSKYELLLQV----CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 124 AfsVfLFNs~GeLLLQq----~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
+++++|++. |++||+| ..+||+|+.. ||++..||+..+||.||+.||-++
T Consensus 2 ~v~~vi~~~-~~vLL~~r~~~~~~~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl 55 (120)
T cd04683 2 AVYVLLRRD-DEVLLQRRANTGYMDGQWALP-AGHLEKGEDAVTAAVREAREEIGV 55 (120)
T ss_pred cEEEEEEEC-CEEEEEEccCCCCCCCeEeCC-ccccCCCCCHHHHHHHHHHHHHCC
Confidence 578888875 8888887 3469999987 999999999999999999999754
No 36
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.85 E-value=4.5e-09 Score=78.22 Aligned_cols=56 Identities=20% Similarity=-0.018 Sum_probs=48.9
Q ss_pred CccEEEEEEEEEcCCCcEEEEeecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 119 NLLHRAFSVFLFNSKYELLLQVCLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 119 GLlHRAfsVfLFNs~GeLLLQq~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
-+++.++.++++|.+|++|||+....|.|+.- |||+..||+..+||.||+.||-+.
T Consensus 4 ~~~~~~~~~~v~~~~~~vLL~~r~~~~~w~~P-gG~v~~gEt~~~aa~REl~EE~Gi 59 (132)
T cd04677 4 PLILVGAGVILLNEQGEVLLQKRSDTGDWGLP-GGAMELGESLEETARRELKEETGL 59 (132)
T ss_pred cccccceEEEEEeCCCCEEEEEecCCCcEECC-eeecCCCCCHHHHHHHHHHHHhCC
Confidence 35788999999999999999983334899996 899999999999999999999764
No 37
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=98.85 E-value=4.1e-09 Score=80.57 Aligned_cols=51 Identities=12% Similarity=-0.014 Sum_probs=44.7
Q ss_pred EEEEEEEcCCCcEEEEe-ecC-CCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 124 AFSVFLFNSKYELLLQV-CLF-CILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 124 AfsVfLFNs~GeLLLQq-~~f-PglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
+|.++|+|.++++||+| ..+ +|.|+. .|||+..||+..+||.||+.||-++
T Consensus 2 ~v~i~l~~~~~~vLL~~r~~~~~~~w~l-PgG~ie~gEt~~~aA~REl~EEtGl 54 (131)
T cd03429 2 AVIVLVIDGGDRILLARQPRFPPGMYSL-LAGFVEPGESLEEAVRREVKEEVGI 54 (131)
T ss_pred eEEEEEEeCCCEEEEEEecCCCCCcCcC-CcccccCCCCHHHHHhhhhhhccCc
Confidence 68899999999998888 445 688986 5999999999999999999999765
No 38
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.76 E-value=1.7e-08 Score=73.74 Aligned_cols=51 Identities=16% Similarity=-0.062 Sum_probs=43.8
Q ss_pred EEEEEEEcCCCcEEEEe---ecCCCceecccccCcCCCCCHHHHHHhhhhccCceE
Q 030138 124 AFSVFLFNSKYELLLQV---CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNILF 176 (182)
Q Consensus 124 AfsVfLFNs~GeLLLQq---~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~~ 176 (182)
++.++|++. |++||+| ..++|.|..- |||+..||+.++||.||+.||-++-
T Consensus 2 ~v~~ii~~~-~~vLl~~r~~~~~~~~w~~P-gG~ie~gE~~~~aa~RE~~EEtGl~ 55 (122)
T cd04673 2 AVGAVVFRG-GRVLLVRRANPPDAGLWSFP-GGKVELGETLEQAALRELLEETGLE 55 (122)
T ss_pred cEEEEEEEC-CEEEEEEEcCCCCCCeEECC-CcccCCCCCHHHHHHHHHHHhhCcE
Confidence 577888885 7888887 4578999976 9999999999999999999997754
No 39
>PLN02839 nudix hydrolase
Probab=98.75 E-value=1.6e-08 Score=92.42 Aligned_cols=83 Identities=7% Similarity=-0.112 Sum_probs=69.4
Q ss_pred cCeEEEeec-CCcEEeeeechhchhhhccccCCccEEEEEEEEEc---CCCcEEEEe-----ecCCCceecccccCcCCC
Q 030138 88 EDECILVDE-NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFN---SKYELLLQV-----CLFCILWVKTCLSMDCHW 158 (182)
Q Consensus 88 eE~vdLVDe-~d~~iG~~~R~~~Hr~e~i~~~GLlHRAfsVfLFN---s~GeLLLQq-----~~fPglWDnTcgGHplaG 158 (182)
.|...|++. ++.+.....|.-+.. -|..-.+||+--|- .+++|.||| .+|||||||+++|.+-+|
T Consensus 174 nE~y~V~~~~~~~~l~~iERaA~~l------fGi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aG 247 (372)
T PLN02839 174 NELYPVKPSFNAPVFFSLERAAAPY------FGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHG 247 (372)
T ss_pred cCccccccCCCCcceEEEeeccccc------cCceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCC
Confidence 477888865 356888888877766 79988899988663 335699999 789999999999999999
Q ss_pred CCHHHHHHhhhhccCceE
Q 030138 159 VVQICGLTWEMTDSNILF 176 (182)
Q Consensus 159 Es~~eAA~REl~ee~~~~ 176 (182)
|+..+++.||..||-.++
T Consensus 248 esp~etliREa~EEAgLp 265 (372)
T PLN02839 248 ISCGENLVKECEEEAGIS 265 (372)
T ss_pred CCHHHHHHHHHHHHcCCC
Confidence 999999999999997654
No 40
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.74 E-value=1.8e-08 Score=76.70 Aligned_cols=52 Identities=13% Similarity=-0.022 Sum_probs=46.3
Q ss_pred EEEEEEEcCCCcEEEEe---ecCCCceecccccCcCCCCCHHHHHHhhhhccCceE
Q 030138 124 AFSVFLFNSKYELLLQV---CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNILF 176 (182)
Q Consensus 124 AfsVfLFNs~GeLLLQq---~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~~ 176 (182)
++.++|+|.+|++||+| ..++++|... |||+..||+..+||.||+.||-+.-
T Consensus 2 ~~~~vv~~~~~~vLl~~r~~~~~~~~w~lP-gG~ve~gEt~~~aa~REl~EEtG~~ 56 (123)
T cd04671 2 IVAAVILNNQGEVLLIQEAKRSCRGKWYLP-AGRMEPGETIEEAVKREVKEETGLD 56 (123)
T ss_pred EEEEEEEcCCCEEEEEEecCCCCCCeEECc-eeecCCCCCHHHHHHHHHHHHHCCe
Confidence 57889999999999987 4578999999 8999999999999999999997653
No 41
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=98.73 E-value=2e-08 Score=73.72 Aligned_cols=50 Identities=14% Similarity=-0.106 Sum_probs=42.7
Q ss_pred EEEEEEEcCCCcEEEEe---ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 124 AFSVFLFNSKYELLLQV---CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 124 AfsVfLFNs~GeLLLQq---~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
++.++|+|. |++||.| ..++|+|+.- |||+..||+..+||.||+.||-+.
T Consensus 2 ~~~~ii~~~-~~vLl~~~~~~~~~~~w~lP-gG~ve~gE~~~~aa~RE~~EEtGl 54 (128)
T cd04684 2 GAYAVIPRD-GKLLLIQKNGGPYEGRWDLP-GGGIEPGESPEEALHREVLEETGL 54 (128)
T ss_pred eeEEEEEeC-CEEEEEEccCCCCCCeEECC-CcccCCCCCHHHHHHHHHHHHhCc
Confidence 467788887 8888887 2368999997 899999999999999999999653
No 42
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.70 E-value=3.6e-08 Score=71.91 Aligned_cols=51 Identities=12% Similarity=-0.066 Sum_probs=43.6
Q ss_pred EEEEEEEcCCCcEEEEeecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 124 AFSVFLFNSKYELLLQVCLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 124 AfsVfLFNs~GeLLLQq~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
++.++|+|.+|++||+|..--|+|+.- |||+..||+..+||.||+.||-++
T Consensus 4 ~v~~ii~~~~~~vLl~~r~~~~~w~lP-gG~v~~~E~~~~aa~REl~EE~Gl 54 (129)
T cd04676 4 GVTAVVRDDEGRVLLIRRSDNGLWALP-GGAVEPGESPADTAVREVREETGL 54 (129)
T ss_pred eEEEEEECCCCeEEEEEecCCCcEECC-eeccCCCCCHHHHHHHHHHHHhCc
Confidence 588899999999999882222999997 899999999999999999999643
No 43
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=98.69 E-value=3.2e-08 Score=70.08 Aligned_cols=52 Identities=13% Similarity=-0.077 Sum_probs=45.2
Q ss_pred EEEEEEEEcCCCcEEEEe--ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 123 RAFSVFLFNSKYELLLQV--CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 123 RAfsVfLFNs~GeLLLQq--~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
++++++|+|.++++||+| ..++|+|+.- |||+..||+..++|.||+.||-++
T Consensus 1 ~~~~~i~~~~~~~ill~kr~~~~~~~~~~p-~G~~~~~e~~~~~a~RE~~EE~Gl 54 (123)
T cd02883 1 VAVGAVILDEDGRVLLVRRADSPGGLWELP-GGGVEPGETLEEAAIREVREETGL 54 (123)
T ss_pred CceEEEEECCCCCEEEEEEcCCCCCeEeCC-cccccCCCCHHHHHHHHHHHhhCc
Confidence 368899999999999988 2279999987 799999999999999999988654
No 44
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=98.68 E-value=4.1e-08 Score=70.73 Aligned_cols=50 Identities=10% Similarity=-0.007 Sum_probs=43.8
Q ss_pred EEEEEEEcCCCcEEEEe----ecCCCceecccccCcCCCCCHHHHHHhhhhccCc
Q 030138 124 AFSVFLFNSKYELLLQV----CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNI 174 (182)
Q Consensus 124 AfsVfLFNs~GeLLLQq----~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~ 174 (182)
++.++|+|++|++|||| ..+||+|+.- |||+..||+..++|.||+.||-+
T Consensus 3 ~~~~~i~~~~~~~Ll~~r~~~~~~~g~w~~p-~G~~~~~e~~~~~a~Re~~EE~g 56 (124)
T cd03425 3 VVAAIIIDDDGRILIAQRPAGKHLGGLWEFP-GGKVEPGETPEQALVRELREELG 56 (124)
T ss_pred EEEEEEECCCCEEEEEEeCCCCCCCCeEeCC-CcccCCCCCHHHHHHHHHHHhhC
Confidence 45677889889999987 3599999995 89999999999999999999965
No 45
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=98.67 E-value=5e-08 Score=73.38 Aligned_cols=51 Identities=12% Similarity=-0.134 Sum_probs=43.3
Q ss_pred EEEEEEEEcCCCcEEEEe---ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 123 RAFSVFLFNSKYELLLQV---CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 123 RAfsVfLFNs~GeLLLQq---~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
++..|+|.+. |++||++ ..++|+|..- |||+..||+..+||.||+.||-+.
T Consensus 2 ~~~~~~i~~~-~~vLL~~r~~~~~~~~w~~P-gG~ve~gEs~~~aa~RE~~EEtGl 55 (137)
T cd03427 2 LTTLCFIKDP-DKVLLLNRKKGPGWGGWNGP-GGKVEPGETPEECAIRELKEETGL 55 (137)
T ss_pred eEEEEEEEEC-CEEEEEEecCCCCCCeEeCC-ceeCCCCCCHHHHHHHHHHHhhCe
Confidence 5678888887 7888876 2379999876 999999999999999999999764
No 46
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=98.67 E-value=4.8e-08 Score=71.60 Aligned_cols=50 Identities=10% Similarity=-0.065 Sum_probs=42.5
Q ss_pred EEEEEEEcCCCcEEEEe----ecCCCceecccccCcCCCCCHHHHHHhhhhccCc
Q 030138 124 AFSVFLFNSKYELLLQV----CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNI 174 (182)
Q Consensus 124 AfsVfLFNs~GeLLLQq----~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~ 174 (182)
.+.++|.|.+|++|||| ..++|+|+.- ||++..||+..+||.||+.||-+
T Consensus 6 ~~~~ii~~~~~~vll~rR~~~~~~~g~w~~P-gG~~~~gE~~~~a~~Re~~EE~g 59 (129)
T PRK10776 6 IAVGIIRNPNNEIFITRRAADAHMAGKWEFP-GGKIEAGETPEQALIRELQEEVG 59 (129)
T ss_pred EEEEEEECCCCEEEEEEecCCCCCCCeEECC-ceecCCCCCHHHHHHHHHHHHHC
Confidence 34455678889999998 4589999987 89999999999999999999854
No 47
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=98.60 E-value=7.3e-08 Score=71.02 Aligned_cols=52 Identities=13% Similarity=-0.069 Sum_probs=44.5
Q ss_pred EEEEEEEEcCC---CcEEEEeecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 123 RAFSVFLFNSK---YELLLQVCLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 123 RAfsVfLFNs~---GeLLLQq~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
+++.++|++.+ |++||+|..-.+.|+.- |||+..||+..+||.||+.||-+.
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~~~~w~~P-gG~v~~gEs~~~aa~REl~EEtGl 56 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPRGDDWSLP-KGKLEPGETPPEAAVREVEEETGI 56 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCCCCcccCC-CCccCCCCCHHHHHHHHHhhhhCC
Confidence 46788888876 89999983334899988 999999999999999999999875
No 48
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.57 E-value=1.3e-07 Score=70.55 Aligned_cols=51 Identities=18% Similarity=-0.036 Sum_probs=44.5
Q ss_pred EEEEEEEEEcCCCcEEEEeecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 122 HRAFSVFLFNSKYELLLQVCLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 122 HRAfsVfLFNs~GeLLLQq~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
|||+.|++.| |++||||....++|..- |||+..||+..+||.||+.||-++
T Consensus 2 ~~v~~vi~~~--~~vLl~~~~~~~~w~lP-gG~ve~gEs~~~aa~RE~~EEtGl 52 (126)
T cd04688 2 VRAAAIIIHN--GKLLVQKNPDETFYRPP-GGGIEFGESSEEALIREFKEELGL 52 (126)
T ss_pred eEEEEEEEEC--CEEEEEEeCCCCeEECC-CccccCCCCHHHHHHHHHHHHhCC
Confidence 8899888875 49999994347899888 899999999999999999999774
No 49
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.54 E-value=1.3e-07 Score=70.67 Aligned_cols=48 Identities=15% Similarity=-0.193 Sum_probs=39.3
Q ss_pred EEEEcCCCcEEEEe-----ecCCCceecccccCcCCCCCHHHHHHhhhhccCceE
Q 030138 127 VFLFNSKYELLLQV-----CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNILF 176 (182)
Q Consensus 127 VfLFNs~GeLLLQq-----~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~~ 176 (182)
.+|++. |++||+| ..+||+|+.- ||++..||+..+||+||+.||-++-
T Consensus 5 ~vi~~~-~~vLL~rR~~~~~~~~g~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~ 57 (117)
T cd04691 5 GVLFSD-DKVLLERRSLTKNADPGKLNIP-GGHIEAGESQEEALLREVQEELGVD 57 (117)
T ss_pred EEEEEC-CEEEEEEeCCCCCCCCCeEECc-ceeecCCCCHHHHHHHHHHHHHCCC
Confidence 345554 8888876 2599999885 8999999999999999999987653
No 50
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=98.53 E-value=2.1e-07 Score=69.77 Aligned_cols=48 Identities=15% Similarity=-0.042 Sum_probs=40.1
Q ss_pred EEEEEcCCCcEEEEe----ecCCCceecccccCcCCCCCHHHHHHhhhhccCc
Q 030138 126 SVFLFNSKYELLLQV----CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNI 174 (182)
Q Consensus 126 sVfLFNs~GeLLLQq----~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~ 174 (182)
..+|++.+|++||+| ..++|+|..- ||++..||+..+||.||+.||-+
T Consensus 7 ~~~ii~~~~~vLL~~R~~~~~~~g~w~~P-gG~ve~gE~~~~a~~RE~~EE~G 58 (135)
T PRK10546 7 VAAIIERDGKILLAQRPAHSDQAGLWEFA-GGKVEPGESQPQALIRELREELG 58 (135)
T ss_pred EEEEEecCCEEEEEEccCCCCCCCcEECC-cccCCCCCCHHHHHHHHHHHHHC
Confidence 334446778999887 4589999988 99999999999999999999953
No 51
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.52 E-value=2.1e-07 Score=68.13 Aligned_cols=51 Identities=10% Similarity=-0.099 Sum_probs=43.4
Q ss_pred EEEEEEEcCCCcEEEEeecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 124 AFSVFLFNSKYELLLQVCLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 124 AfsVfLFNs~GeLLLQq~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
.+.++++|.+|++|+.|..-.+.|..- |||+..||+..+||.||+.||-+.
T Consensus 2 ~~~~~v~~~~~~vLl~~r~~~~~w~~P-gG~ve~~Es~~~aa~REl~EEtGl 52 (118)
T cd04690 2 IAAALILVRDGRVLLVRKRGTDVFYLP-GGKIEAGETPLQALIRELSEELGL 52 (118)
T ss_pred eEEEEEEecCCeEEEEEECCCCcEECC-CCccCCCCCHHHHHHHHHHHHHCC
Confidence 467888999999999773346889876 899999999999999999998664
No 52
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.52 E-value=1.8e-07 Score=70.17 Aligned_cols=51 Identities=6% Similarity=-0.140 Sum_probs=41.9
Q ss_pred EEEEEEEEcCCCcEEEEe--ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 123 RAFSVFLFNSKYELLLQV--CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 123 RAfsVfLFNs~GeLLLQq--~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
.++.++|++ +|++|++| ...+++|..- |||+..||+..+||.||+.||-++
T Consensus 2 ~~a~~iv~~-~~~vLl~~r~~~~~~~~~lP-GG~ve~gEt~~~aa~RE~~EEtGl 54 (128)
T cd04687 2 NSAKAVIIK-NDKILLIKHHDDGGVWYILP-GGGQEPGETLEDAAHRECKEEIGI 54 (128)
T ss_pred cEEEEEEEE-CCEEEEEEEEcCCCCeEECC-CcccCCCCCHHHHHHHHHHHHHCC
Confidence 356777776 57888887 4456788887 899999999999999999999764
No 53
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=98.47 E-value=3.2e-07 Score=72.22 Aligned_cols=51 Identities=10% Similarity=-0.016 Sum_probs=43.7
Q ss_pred EEEEEEEcCC-CcEEEEeecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 124 AFSVFLFNSK-YELLLQVCLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 124 AfsVfLFNs~-GeLLLQq~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
++.++|+|.+ |++||.|...++.|+.- ||++..||+..+||+|||.||-++
T Consensus 3 ~~gaii~~~~~~~vLLvr~~~~~~W~lP-GG~ve~gEs~~~AA~REl~EETGl 54 (145)
T cd03672 3 VYGAIILNEDLDKVLLVKGWKSKSWSFP-KGKINKDEDDHDCAIREVYEETGF 54 (145)
T ss_pred eeEEEEEeCCCCEEEEEEecCCCCEECC-CccCCCCcCHHHHHHHHHHHhhCc
Confidence 4778899975 68888884466799998 999999999999999999999654
No 54
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.47 E-value=3e-07 Score=69.12 Aligned_cols=50 Identities=16% Similarity=-0.111 Sum_probs=42.5
Q ss_pred EEEEEEcCCCcEEEEe--ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 125 FSVFLFNSKYELLLQV--CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 125 fsVfLFNs~GeLLLQq--~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
+.++|+|.+|++||+| ....++|..- ||++..||+..+||+||+.||-++
T Consensus 3 ~~~ii~~~~~~vLL~~r~~~~~~~w~lP-GG~ve~gEs~~~a~~REl~EEtGl 54 (121)
T cd04669 3 ASIVIINDQGEILLIRRIKPGKTYYVFP-GGGIEEGETPEEAAKREALEELGL 54 (121)
T ss_pred eEEEEEeCCCEEEEEEEecCCCCcEECC-ceeccCCCCHHHHHHHHHHHhhCe
Confidence 5677888889988887 3445889997 899999999999999999999765
No 55
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.47 E-value=3.9e-07 Score=67.28 Aligned_cols=51 Identities=10% Similarity=-0.031 Sum_probs=43.2
Q ss_pred EEEEEEEEcCCCcEEEEe----ecCCCceecccccCcCCCCCHHHHHHhhhhccCc
Q 030138 123 RAFSVFLFNSKYELLLQV----CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNI 174 (182)
Q Consensus 123 RAfsVfLFNs~GeLLLQq----~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~ 174 (182)
.++.++|++.+|++|||| ..++|+|+.- ||++..||+..+||+||+.||-+
T Consensus 5 ~~~~~ii~~~~~~vLl~~R~~~~~~~g~w~~P-gg~ve~ge~~~~~~~RE~~EE~g 59 (128)
T TIGR00586 5 QIAVGIIRNENGEIIITRRADGHMFAKLLEFP-GGKEEGGETPEQAVVRELEEEIG 59 (128)
T ss_pred EEEEEEEECCCCEEEEEEEeCCCCCCCeEECC-CcccCCCCCHHHHHHHHHHHHHC
Confidence 345555668889999998 4689999987 89999999999999999999963
No 56
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.46 E-value=4.2e-07 Score=67.87 Aligned_cols=52 Identities=15% Similarity=0.007 Sum_probs=42.9
Q ss_pred EEEEEEEcCCCcEEEEeecCCCceecccccCcCCCCCHHHHHHhhhhccCceEE
Q 030138 124 AFSVFLFNSKYELLLQVCLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNILFV 177 (182)
Q Consensus 124 AfsVfLFNs~GeLLLQq~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~~~ 177 (182)
.+.++|+|. |++||.|....|+|+.. |||+..||+..+||.|||.||-+.-+
T Consensus 4 ~v~~~i~~~-~~vLL~~~~~~~~w~~P-GG~ve~gEs~~~aa~REl~EEtG~~~ 55 (123)
T cd04672 4 DVRAAIFKD-GKILLVREKSDGLWSLP-GGWADVGLSPAENVVKEVKEETGLDV 55 (123)
T ss_pred eEEEEEEEC-CEEEEEEEcCCCcEeCC-ccccCCCCCHHHHHHHHHHHHhCCee
Confidence 478889987 78666552238999988 89999999999999999999977644
No 57
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=98.37 E-value=7.2e-07 Score=67.50 Aligned_cols=52 Identities=10% Similarity=-0.183 Sum_probs=43.1
Q ss_pred EEEEEEEEcCCCcEEEEe---ecCCCceecccccCcCCCCCHHHHHHhhhhccCceE
Q 030138 123 RAFSVFLFNSKYELLLQV---CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNILF 176 (182)
Q Consensus 123 RAfsVfLFNs~GeLLLQq---~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~~ 176 (182)
-++.+++++. |++||.| ...+|.|+.- |||+..||+..+||+||+.||-++-
T Consensus 14 ~~v~~ii~~~-~~vLL~kr~~~~~~g~w~lP-gG~ve~gE~~~~a~~REl~EEtGl~ 68 (130)
T cd04511 14 IIVGCVPEWE-GKVLLCRRAIEPRHGFWTLP-AGFMENGETTEQGALRETWEEAGAR 68 (130)
T ss_pred EEEEEEEecC-CEEEEEEecCCCCCCeEECC-cccccCCCCHHHHHHHHHHHHhCCE
Confidence 3566677876 7877776 3477899999 9999999999999999999998753
No 58
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=98.37 E-value=5.6e-07 Score=66.94 Aligned_cols=50 Identities=12% Similarity=0.020 Sum_probs=41.4
Q ss_pred EEEEEEEEcCCC---cEEEEe-ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 123 RAFSVFLFNSKY---ELLLQV-CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 123 RAfsVfLFNs~G---eLLLQq-~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
+++.+++|+.++ ++||.| .. |.|+.- |||+..||+..+||.||+.||-++
T Consensus 3 ~~~g~vi~~~~~~~~~vLl~~~~~--~~w~~P-gG~ve~gEs~~~aa~REl~EEtGl 56 (130)
T cd03428 3 RSAGAIIYRRLNNEIEYLLLQASY--GHWDFP-KGHVEPGEDDLEAALRETEEETGI 56 (130)
T ss_pred eEEEEEEEEecCCCceEEEEEccC--CcCcCC-cCCCCCCCCHHHHHHHHHHHHHCC
Confidence 678888888765 566666 32 999998 999999999999999999999654
No 59
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=98.34 E-value=1.2e-06 Score=65.20 Aligned_cols=52 Identities=10% Similarity=-0.108 Sum_probs=43.4
Q ss_pred EEEEEEEEEcCCCcEEEEeecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 122 HRAFSVFLFNSKYELLLQVCLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 122 HRAfsVfLFNs~GeLLLQq~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
|..+.++|++ +|++|++|..-.+.|..- |||+..||+..+||.||+.||-++
T Consensus 1 ~~~~~~vi~~-~~~vLlv~~~~~~~~~lP-GG~ve~gEt~~~aa~REl~EEtGl 52 (125)
T cd04689 1 HLRARAIVRA-GNKVLLARVIGQPHYFLP-GGHVEPGETAENALRRELQEELGV 52 (125)
T ss_pred CeEEEEEEEe-CCEEEEEEecCCCCEECC-CCcCCCCCCHHHHHHHHHHHHhCc
Confidence 5667888884 688888883335789886 999999999999999999999764
No 60
>PLN02325 nudix hydrolase
Probab=98.29 E-value=1.5e-06 Score=68.11 Aligned_cols=52 Identities=13% Similarity=-0.130 Sum_probs=43.9
Q ss_pred cEEEEEEEEEcCCCcEEEEe-ec--CCCceecccccCcCCCCCHHHHHHhhhhccCc
Q 030138 121 LHRAFSVFLFNSKYELLLQV-CL--FCILWVKTCLSMDCHWVVQICGLTWEMTDSNI 174 (182)
Q Consensus 121 lHRAfsVfLFNs~GeLLLQq-~~--fPglWDnTcgGHplaGEs~~eAA~REl~ee~~ 174 (182)
...++.++|++. |++||+| .. .-|+|..- |||+..||+..+||.||+.||-+
T Consensus 8 p~~~v~~vi~~~-~~vLL~rr~~~~~~g~W~lP-GG~ve~gEs~~~aa~REv~EEtG 62 (144)
T PLN02325 8 PRVAVVVFLLKG-NSVLLGRRRSSIGDSTFALP-GGHLEFGESFEECAAREVKEETG 62 (144)
T ss_pred CeEEEEEEEEcC-CEEEEEEecCCCCCCeEECC-ceeCCCCCCHHHHHHHHHHHHHC
Confidence 467788999985 7999988 22 24789999 99999999999999999999954
No 61
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.28 E-value=1.4e-06 Score=66.04 Aligned_cols=44 Identities=9% Similarity=0.009 Sum_probs=36.9
Q ss_pred cCCCcEEEEe--ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 131 NSKYELLLQV--CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 131 Ns~GeLLLQq--~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
+.++++||.| ..++|.|.. .|||+..||+..+||.||+.||-++
T Consensus 11 ~~~~~vLl~~r~~~~~g~w~~-PgG~ve~gEs~~~aa~RE~~EEtGl 56 (131)
T cd04695 11 DKETKVLLLKRVKTLGGFWCH-VAGGVEAGETAWQAALRELKEETGI 56 (131)
T ss_pred CCCCEEEEEEecCCCCCcEEC-CcccccCCCCHHHHHHHHHHHHhCC
Confidence 4567777755 448999986 6999999999999999999999764
No 62
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=98.22 E-value=2.2e-06 Score=64.33 Aligned_cols=49 Identities=8% Similarity=-0.144 Sum_probs=38.3
Q ss_pred EEEEEEcCCCcEEEEe--ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 125 FSVFLFNSKYELLLQV--CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 125 fsVfLFNs~GeLLLQq--~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
+.++|. .+|++||.| +..+++|..- |||+..||+..+||.||+.||-++
T Consensus 3 v~~ii~-~~~~vLlv~r~~~~~~~w~~P-gG~ve~gEs~~~aa~REl~EEtGl 53 (134)
T cd03675 3 VAAVVE-RDGRFLLVEEETDGGLVFNQP-AGHLEPGESLIEAAVRETLEETGW 53 (134)
T ss_pred EEEEEE-ECCEEEEEEEccCCCceEECC-CccCCCCCCHHHHHHHHHHHHHCc
Confidence 344454 456766655 4467899887 999999999999999999999764
No 63
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.11 E-value=6e-06 Score=62.95 Aligned_cols=50 Identities=14% Similarity=-0.042 Sum_probs=40.3
Q ss_pred EEEEEEEcCCCcEEEEeecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 124 AFSVFLFNSKYELLLQVCLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 124 AfsVfLFNs~GeLLLQq~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
++.++|++. |++||.|..-.+.|..- ||++..||+..+||+|||.||-++
T Consensus 2 ~~~~ii~~~-~~vLLv~~~~~~~w~lP-gG~ve~gEt~~~aa~REl~EEtGl 51 (131)
T cd04686 2 AVRAIILQG-DKILLLYTKRYGDYKFP-GGGVEKGEDHIEGLIRELQEETGA 51 (131)
T ss_pred cEEEEEEEC-CEEEEEEEcCCCcEECc-cccCCCCCCHHHHHHHHHHHHHCC
Confidence 577888875 78888772224689875 999999999999999999999543
No 64
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.09 E-value=4.9e-06 Score=61.13 Aligned_cols=42 Identities=12% Similarity=-0.072 Sum_probs=35.5
Q ss_pred CCCcEEEEeecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 132 SKYELLLQVCLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 132 s~GeLLLQq~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
.+|++||+|.. -|.|..- |||+..||+..+||.||+.||-++
T Consensus 9 ~~~~vLlv~r~-~~~w~~P-gG~ve~gE~~~~aa~REl~EEtGl 50 (112)
T cd04667 9 RGGRVLLVRKS-GSRWALP-GGKIEPGETPLQAARRELQEETGL 50 (112)
T ss_pred cCCEEEEEEcC-CCcEeCC-CCcCCCCCCHHHHHHHHHHHHhCC
Confidence 46788888822 2999987 899999999999999999999663
No 65
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=98.09 E-value=5.7e-06 Score=65.54 Aligned_cols=55 Identities=11% Similarity=-0.080 Sum_probs=45.1
Q ss_pred ccEEEEEEEEEcCCCcEEEEe--ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 120 LLHRAFSVFLFNSKYELLLQV--CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 120 LlHRAfsVfLFNs~GeLLLQq--~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
....++.+++...+.-||+++ ..++|+|..- |||+..||+..+||.||++||=++
T Consensus 8 ~p~~~v~~~i~~~~~iLLvrR~~~p~~g~WalP-GG~ve~GEt~eeaa~REl~EETgL 64 (145)
T COG1051 8 TPLVAVGALIVRNGRILLVRRANEPGAGYWALP-GGFVEIGETLEEAARRELKEETGL 64 (145)
T ss_pred CcceeeeEEEEeCCEEEEEEecCCCCCCcEeCC-CccCCCCCCHHHHHHHHHHHHhCC
Confidence 356778888887764466666 6677999999 999999999999999999998554
No 66
>PRK08999 hypothetical protein; Provisional
Probab=98.09 E-value=6.9e-06 Score=70.68 Aligned_cols=52 Identities=12% Similarity=-0.111 Sum_probs=44.1
Q ss_pred EEEEEEEEEcCCCcEEEEe----ecCCCceecccccCcCCCCCHHHHHHhhhhccCc
Q 030138 122 HRAFSVFLFNSKYELLLQV----CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNI 174 (182)
Q Consensus 122 HRAfsVfLFNs~GeLLLQq----~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~ 174 (182)
+..+.++|+|.+|++||+| ..++|+|..- ||++..||+..+||.||+.||-+
T Consensus 5 ~~~~~~vi~~~~~~vLL~kR~~~~~~~g~w~~P-gG~ve~gE~~~~aa~RE~~EE~G 60 (312)
T PRK08999 5 IHVAAGVIRDADGRILLARRPEGKHQGGLWEFP-GGKVEPGETVEQALARELQEELG 60 (312)
T ss_pred eEEEEEEEECCCCeEEEEEecCCCCCCCeEECC-ccCCCCCCCHHHHHHHHHHHHhC
Confidence 3445566788889999987 4689999988 89999999999999999999853
No 67
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.95 E-value=1.6e-05 Score=61.56 Aligned_cols=50 Identities=6% Similarity=-0.251 Sum_probs=40.9
Q ss_pred EEEEEEcCCCcEEEEe--ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 125 FSVFLFNSKYELLLQV--CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 125 fsVfLFNs~GeLLLQq--~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
+.++|...+|.||++| ..++|+|..- ||++..||+..+||+||+.||-+.
T Consensus 7 av~vl~~~~~~lL~~r~~~~~~~~w~lP-gG~ve~~E~~~~aa~REl~EE~g~ 58 (118)
T cd04674 7 VVALLPVDDGLLVIRRGIEPGRGKLALP-GGFIELGETWQDAVARELLEETGV 58 (118)
T ss_pred EEEEEEECCCEEEEEeecCCCCCeEECC-ceecCCCCCHHHHHHHHHHHHHCC
Confidence 4444555678888888 4467999988 899999999999999999998664
No 68
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=97.95 E-value=1.6e-05 Score=68.71 Aligned_cols=50 Identities=10% Similarity=-0.098 Sum_probs=39.7
Q ss_pred EEEEEEEcCCCcEEEEe-ecC-CCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 124 AFSVFLFNSKYELLLQV-CLF-CILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 124 AfsVfLFNs~GeLLLQq-~~f-PglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
++-|.|.+ ++++||+| ..+ +|+|.. .||++..||+.++||+|||.||-++
T Consensus 134 aViv~V~~-~~~iLL~rr~~~~~g~wsl-PgG~vE~GEs~eeAa~REv~EEtGl 185 (256)
T PRK00241 134 CIIVAVRR-GDEILLARHPRHRNGVYTV-LAGFVEVGETLEQCVAREVMEESGI 185 (256)
T ss_pred EEEEEEEe-CCEEEEEEccCCCCCcEeC-cccCCCCCCCHHHHhhhhhhhccCc
Confidence 45555554 58888888 333 688985 4999999999999999999999654
No 69
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=97.88 E-value=2.1e-05 Score=70.13 Aligned_cols=52 Identities=12% Similarity=-0.054 Sum_probs=42.7
Q ss_pred EEEEEEEEEcCCCcEEEEe---ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 122 HRAFSVFLFNSKYELLLQV---CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 122 HRAfsVfLFNs~GeLLLQq---~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
+.++.++|++ +|++||.| ..++|+|..- ||++..||+.++||.|||.||-++
T Consensus 203 ~vtv~avv~~-~g~VLLvrR~~~p~~g~W~lP-GG~ve~gEt~~~Aa~REl~EETGl 257 (340)
T PRK05379 203 FVTVDAVVVQ-SGHVLLVRRRAEPGKGLWALP-GGFLEQDETLLDACLRELREETGL 257 (340)
T ss_pred ceEEEEEEEE-CCEEEEEEecCCCCCCeEECC-cccCCCCCCHHHHHHHHHHHHHCC
Confidence 4677777775 57877766 3467899998 999999999999999999999653
No 70
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=97.88 E-value=2.3e-05 Score=62.07 Aligned_cols=51 Identities=12% Similarity=0.086 Sum_probs=40.7
Q ss_pred EEEEEEEc--C-CCcEEEEe-------ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 124 AFSVFLFN--S-KYELLLQV-------CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 124 AfsVfLFN--s-~GeLLLQq-------~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
+..+++|+ . ..++||++ ..+++.|+.. |||+..||+..+||+||+.||-+.
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lP-gG~ie~~E~~~~aA~REl~EEtGl 62 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIP-KGEYTEGEDPLLAAKREFSEETGF 62 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECC-cccCCCCcCHHHHHHHHHHHHhCC
Confidence 45566664 2 23688886 2567999997 999999999999999999999765
No 71
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=97.84 E-value=3.2e-05 Score=62.75 Aligned_cols=51 Identities=10% Similarity=-0.175 Sum_probs=42.5
Q ss_pred EEEEEEEEcCCCcEEEEe----ecCCCceecccccCcCCCCCHHHHHHhhhhccCc
Q 030138 123 RAFSVFLFNSKYELLLQV----CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNI 174 (182)
Q Consensus 123 RAfsVfLFNs~GeLLLQq----~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~ 174 (182)
.++.|+.++.+|++||.| ...++.|.+- ||++..||+.++||+|||.||-+
T Consensus 48 ~~v~v~~~~~~~~vlLvrq~r~~~~~~~~elP-aG~ve~gE~~~~aA~REl~EEtG 102 (185)
T PRK11762 48 GAVMIVPILDDDTLLLIREYAAGTERYELGFP-KGLIDPGETPLEAANRELKEEVG 102 (185)
T ss_pred CEEEEEEEeCCCEEEEEEeecCCCCCcEEEcc-ceeCCCCCCHHHHHHHHHHHHHC
Confidence 468888888888877776 3456779885 89999999999999999999865
No 72
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=97.71 E-value=6.6e-05 Score=57.28 Aligned_cols=50 Identities=8% Similarity=-0.056 Sum_probs=38.0
Q ss_pred EEEEEEEcCC---CcE-EEEeecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 124 AFSVFLFNSK---YEL-LLQVCLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 124 AfsVfLFNs~---GeL-LLQq~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
++.+++|+.+ +++ |+|+... +.|+.- |||+..||+..+||.||+.||-+.
T Consensus 2 ~~g~v~~~~~~~~~~vLLv~~~~~-~~w~~P-gG~ve~~E~~~~aa~RE~~EEtG~ 55 (122)
T cd04666 2 QAGAIPYRETGGEVEVLLVTSRRT-GRWIVP-KGGPEKDESPAEAAAREAWEEAGV 55 (122)
T ss_pred EEEEEEEEEcCCceEEEEEEecCC-CeEECC-CCCcCCCCCHHHHHHHHHHHHhCC
Confidence 3556666654 454 4465333 999988 999999999999999999998663
No 73
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=97.70 E-value=9.9e-05 Score=52.27 Aligned_cols=53 Identities=19% Similarity=-0.054 Sum_probs=41.2
Q ss_pred EEEEEEEcCC-CcEEEEeecCCC-ceecccccCcCCCCCHHH-HHHhhhhccCceEE
Q 030138 124 AFSVFLFNSK-YELLLQVCLFCI-LWVKTCLSMDCHWVVQIC-GLTWEMTDSNILFV 177 (182)
Q Consensus 124 AfsVfLFNs~-GeLLLQq~~fPg-lWDnTcgGHplaGEs~~e-AA~REl~ee~~~~~ 177 (182)
++.+.+.... +++|+++...++ .|..- ||++..||+..+ ||+||+.||-++-+
T Consensus 13 ~~~~~~~~~~~~~vl~~~~~~~~~~~~~P-gG~ve~~e~~~~~aa~RE~~EEtGl~~ 68 (161)
T COG0494 13 AVAVLVGRDGPGEVLLAQRRDDGGLWELP-GGKVEPGEELPEEAAARELEEETGLRV 68 (161)
T ss_pred eEEEEEecCCCCEEeEEEccccCCceecC-CcccCCCCchHHHHHHHHHHHHhCCee
Confidence 4555444443 889999855555 99998 899999999988 99999999987643
No 74
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=97.61 E-value=0.00011 Score=56.58 Aligned_cols=49 Identities=14% Similarity=-0.168 Sum_probs=38.5
Q ss_pred EEEEEEcCCCcEEEEeecCCCceecccccCcCCCCCHHHHHHhhhhccCceE
Q 030138 125 FSVFLFNSKYELLLQVCLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNILF 176 (182)
Q Consensus 125 fsVfLFNs~GeLLLQq~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~~ 176 (182)
|.|++++. |++||-+.. .+.|+.- ||++..||+..+||+||+.||-+.-
T Consensus 3 v~vi~~~~-~~vLl~~~~-~~~w~lP-gG~ve~gE~~~~aa~REl~EE~G~~ 51 (118)
T cd04665 3 VLVICFYD-DGLLLVRHK-DRGWEFP-GGHVEPGETIEEAARREVWEETGAE 51 (118)
T ss_pred EEEEEEEC-CEEEEEEeC-CCEEECC-ccccCCCCCHHHHHHHHHHHHHCCc
Confidence 56677765 566665521 5689998 7999999999999999999997654
No 75
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=97.60 E-value=0.00019 Score=51.74 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=40.4
Q ss_pred EEEEEEEEEcCCCcEEEEe----ecCCCceecccccCcCCCCCHHHHHHhhhhcc
Q 030138 122 HRAFSVFLFNSKYELLLQV----CLFCILWVKTCLSMDCHWVVQICGLTWEMTDS 172 (182)
Q Consensus 122 HRAfsVfLFNs~GeLLLQq----~~fPglWDnTcgGHplaGEs~~eAA~REl~ee 172 (182)
++.+.++++..+|++|||| ..|+|+|+.- ++-+..+|+..++..||+.++
T Consensus 2 ~~~~~~~ii~~~~~~ll~kR~~~gl~~glwefP-~~~~~~~~~~~~~~~~~~~~~ 55 (118)
T cd03431 2 RRGIAVVVIRNDGRVLLEKRPEKGLLAGLWEFP-SVEWEEEADGEEALLSALKKA 55 (118)
T ss_pred eEEEEEEEEecCCeEEEEECCCCCCCCcceeCC-CccccCCcCHHHHHHHHHHHH
Confidence 4556666666789999998 6799999998 566777888899999998777
No 76
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=97.57 E-value=8.4e-05 Score=56.95 Aligned_cols=42 Identities=10% Similarity=-0.155 Sum_probs=33.9
Q ss_pred CCcEEE-Ee-ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 133 KYELLL-QV-CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 133 ~GeLLL-Qq-~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
++++|| |+ +...|.|+.- |||+..||+..+||.|||.||-++
T Consensus 12 ~~~~Llvk~~~~~~g~W~fP-gG~ve~gEt~~eaa~REl~EEtGl 55 (132)
T cd04661 12 DTLVLLVQQKVGSQNHWILP-QGKREEGETLRQTAERTLKELCGN 55 (132)
T ss_pred CcEEEEEEeecCCCCeeECC-cccccCCCCHHHHHHHHHHHhhCC
Confidence 344444 44 3345899999 899999999999999999999776
No 77
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=97.49 E-value=0.0002 Score=58.96 Aligned_cols=51 Identities=16% Similarity=-0.052 Sum_probs=38.8
Q ss_pred EEEEEEEcCC-CcEEEEe-e---c-----CCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 124 AFSVFLFNSK-YELLLQV-C---L-----FCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 124 AfsVfLFNs~-GeLLLQq-~---~-----fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
++.|++++.+ +++||-+ . . -|..|.+- ||++..||+.++||+|||.||-+.
T Consensus 46 ~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelP-aG~ve~gE~~~~aA~REl~EEtG~ 106 (185)
T TIGR00052 46 AAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELS-AGMVEKGESPEDVARREAIEEAGY 106 (185)
T ss_pred eEEEEEEECCCCEEEEEECceeeeeecCCcceEEEEC-cEecCCCCCHHHHHHHHccccccc
Confidence 6788888764 6755555 1 1 25566666 899999999999999999998654
No 78
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=97.39 E-value=0.00047 Score=57.68 Aligned_cols=52 Identities=15% Similarity=-0.049 Sum_probs=39.9
Q ss_pred EEEEEEEEcCC-CcEEEEe-ecCCC--------ceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 123 RAFSVFLFNSK-YELLLQV-CLFCI--------LWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 123 RAfsVfLFNs~-GeLLLQq-~~fPg--------lWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
-++.|+.++.+ |+++|-+ ..+|- .|.+- +|.+..||+.++||+|||.||-+.
T Consensus 50 ~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~P-AG~vd~gE~p~~aA~REL~EETGy 111 (202)
T PRK10729 50 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMV-AGMIEEGESVEDVARREAIEEAGL 111 (202)
T ss_pred CeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEcc-ceEcCCCCCHHHHHHHHHHHHhCc
Confidence 36778888864 6866665 55553 57766 677889999999999999998664
No 79
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=97.11 E-value=0.00091 Score=55.47 Aligned_cols=51 Identities=12% Similarity=-0.119 Sum_probs=37.7
Q ss_pred EEEEEEE--cCCCcEEEEe-----ecCCCceecccccCcCCC-CCHHHHHHhhhhccCce
Q 030138 124 AFSVFLF--NSKYELLLQV-----CLFCILWVKTCLSMDCHW-VVQICGLTWEMTDSNIL 175 (182)
Q Consensus 124 AfsVfLF--Ns~GeLLLQq-----~~fPglWDnTcgGHplaG-Es~~eAA~REl~ee~~~ 175 (182)
|+-|+.+ +.++++|++| ..++|.|.+- ||.+.+| |+.+++|+||+.||=+.
T Consensus 32 aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~P-GG~~e~~de~~~~tA~REl~EEtGl 90 (190)
T PRK10707 32 AAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFP-GGAVDPTDASLIATALREAQEEVAI 90 (190)
T ss_pred eEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcC-CcccCCCcccHHHHHHHHHHHHHCC
Confidence 4444434 3345777776 5689999876 7888875 57899999999999654
No 80
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=96.98 E-value=0.0021 Score=50.66 Aligned_cols=52 Identities=12% Similarity=-0.103 Sum_probs=39.6
Q ss_pred EEEEEEEcCCC--cEEEEeecCCCceecccccCcCCCCCHHHHHHhhhhccCceEE
Q 030138 124 AFSVFLFNSKY--ELLLQVCLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNILFV 177 (182)
Q Consensus 124 AfsVfLFNs~G--eLLLQq~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~~~ 177 (182)
.+.++|.+.++ +||+-|... +.|..- ||.+..||+..+||.||+.||-+.-+
T Consensus 2 ~~~~~~~~~~~~~~ll~~r~~~-~~~~lP-gG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 2 KCPAVLRRNGEVLELLVFEHPL-AGFQIV-KGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEEEeCCceEEEEEEEcCC-CcEECC-CccCCCCCCHHHHHHHHHHHHHCCee
Confidence 35667777665 566666434 459775 89999999999999999999977654
No 81
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=96.59 E-value=0.004 Score=50.81 Aligned_cols=49 Identities=8% Similarity=-0.274 Sum_probs=34.3
Q ss_pred EEEEEEEcCCCcEEEEeecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 124 AFSVFLFNSKYELLLQVCLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 124 AfsVfLFNs~GeLLLQq~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
+|.|+..+.+ ++|+-+. +-..|..- ||++..||+.++||+|||.||-+.
T Consensus 26 ~V~ii~~~~~-~~LL~~~-~~~~~elP-gG~vE~gEt~~eaA~REl~EETG~ 74 (156)
T TIGR02705 26 HVLVIPRYKD-QWLLTEH-KRRGLEFP-GGKVEPGETSKEAAIREVMEETGA 74 (156)
T ss_pred EEEEEEEECC-EEEEEEE-cCCcEECC-ceecCCCCCHHHHHHHHHHHHhCc
Confidence 3445545444 5555441 12348775 899999999999999999999765
No 82
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=96.57 E-value=0.0042 Score=51.63 Aligned_cols=52 Identities=10% Similarity=-0.024 Sum_probs=34.8
Q ss_pred EEEEEEEEcC-CCcEEEEe-ecCC-------Cceeccc-ccCcCCCCCHHHHHHhhhhccCce
Q 030138 123 RAFSVFLFNS-KYELLLQV-CLFC-------ILWVKTC-LSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 123 RAfsVfLFNs-~GeLLLQq-~~fP-------glWDnTc-gGHplaGEs~~eAA~REl~ee~~~ 175 (182)
-++.|++++. +++++|-+ ..+| +.|..-. +|.+..| +.++||+|||.||=+.
T Consensus 46 ~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy 107 (191)
T PRK15009 46 NGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGY 107 (191)
T ss_pred CEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCC
Confidence 3678888886 56766665 3333 4444322 4556654 7999999999998654
No 83
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=96.33 E-value=0.005 Score=54.98 Aligned_cols=49 Identities=10% Similarity=-0.073 Sum_probs=40.5
Q ss_pred EEEEEEEcCCCcEEEEe-ecCCCceecccccCcCCCCCHHHHHHhhhhccC
Q 030138 124 AFSVFLFNSKYELLLQV-CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSN 173 (182)
Q Consensus 124 AfsVfLFNs~GeLLLQq-~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~ 173 (182)
++=|.|.+.+.-+|+++ .+|||+++.= +|-|-+|||-++|..||+.||=
T Consensus 146 ~vIv~v~~~~~ilLa~~~~h~~g~yS~L-AGFVE~GETlE~AV~REv~EE~ 195 (279)
T COG2816 146 CVIVAVIRGDEILLARHPRHFPGMYSLL-AGFVEPGETLEQAVAREVFEEV 195 (279)
T ss_pred eEEEEEecCCceeecCCCCCCCcceeee-eecccCCccHHHHHHHHHHHhh
Confidence 45566666666577777 8889999977 6999999999999999999983
No 84
>PLN02709 nudix hydrolase
Probab=96.30 E-value=0.0076 Score=52.01 Aligned_cols=58 Identities=12% Similarity=-0.111 Sum_probs=45.3
Q ss_pred CCccEEEEEEEEEcCC----C--cEEEEe-----ecCCCceecccccCcCCCC-CHHHHHHhhhhccCceE
Q 030138 118 LNLLHRAFSVFLFNSK----Y--ELLLQV-----CLFCILWVKTCLSMDCHWV-VQICGLTWEMTDSNILF 176 (182)
Q Consensus 118 ~GLlHRAfsVfLFNs~----G--eLLLQq-----~~fPglWDnTcgGHplaGE-s~~eAA~REl~ee~~~~ 176 (182)
+++.+-||-|.|+..+ + ++|+.+ ..+||.|..- ||++..|| +..++|.||+.||-++.
T Consensus 29 ~~~r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafP-GG~~e~~D~~~~~tAlRE~~EEiGl~ 98 (222)
T PLN02709 29 FPAKSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALP-GGKRDEEDKDDIATALREAREEIGLD 98 (222)
T ss_pred CCCCccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCC-CcccCCCCCCHHHHHHHHHHHHHCCC
Confidence 3567888999988642 2 455554 4699999999 99999986 56899999999997653
No 85
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=96.20 E-value=0.0079 Score=50.40 Aligned_cols=38 Identities=11% Similarity=-0.100 Sum_probs=31.8
Q ss_pred EEEEeecCCCceecccccCcCCCCCHHHHHHhhhhccCc
Q 030138 136 LLLQVCLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNI 174 (182)
Q Consensus 136 LLLQq~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~ 174 (182)
+|+-|...+|.|..- ||++..||+..+||+|||.||-+
T Consensus 51 vLl~~r~~~g~walP-GG~v~~~E~~~~aa~Rel~EEt~ 88 (186)
T cd03670 51 FVAIKRPDSGEWAIP-GGMVDPGEKISATLKREFGEEAL 88 (186)
T ss_pred EEEEEeCCCCcCcCC-eeeccCCCCHHHHHHHHHHHHHc
Confidence 333333457999999 99999999999999999999974
No 86
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=96.09 E-value=0.0072 Score=55.26 Aligned_cols=49 Identities=12% Similarity=-0.048 Sum_probs=40.1
Q ss_pred EEEEEEEcCCCc-EEEEe--ecCCCceecccccCcCCCCCHHHHHHhhhhccC
Q 030138 124 AFSVFLFNSKYE-LLLQV--CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSN 173 (182)
Q Consensus 124 AfsVfLFNs~Ge-LLLQq--~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~ 173 (182)
+|=..|.|.+|+ .|+-| ..=||+|+.- +|-..+||+.+||++||.-||-
T Consensus 189 vVIm~li~~d~~~~LL~R~~r~~~gl~t~l-AGFlEpGES~eeav~REtwEEt 240 (345)
T KOG3084|consen 189 VVIMLLIDHDGKHALLGRQKRYPPGLWTCL-AGFLEPGESIEEAVRRETWEET 240 (345)
T ss_pred eEEEEEEcCCCCEeeeecccCCCCchhhhh-hccCCccccHHHHHHHHHHHHh
Confidence 455667888886 55555 5568999987 6999999999999999999874
No 87
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=95.89 E-value=0.016 Score=51.86 Aligned_cols=78 Identities=5% Similarity=-0.121 Sum_probs=54.4
Q ss_pred eEEEeecCCcEEeeeechhchhhhccccCCccEEEEEE--EEEcCCC---cEEEEe-----ecCCCceecccccCcCCCC
Q 030138 90 ECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSV--FLFNSKY---ELLLQV-----CLFCILWVKTCLSMDCHWV 159 (182)
Q Consensus 90 ~vdLVDe~d~~iG~~~R~~~Hr~e~i~~~GLlHRAfsV--fLFNs~G---eLLLQq-----~~fPglWDnTcgGHplaGE 159 (182)
.--+| .+.+++=.+.|..... -|.+---+|| +|.+++- ++.+|| .+|||+|||.+||-...|-
T Consensus 106 ~Y~v~-~~kkp~l~vERa~~~l------fGv~~yGvhingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~ 178 (306)
T KOG4313|consen 106 LYTVY-KSKKPVLAVERAATPL------FGVRKYGVHINGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGF 178 (306)
T ss_pred eeEEE-ecCcceeEeeecccce------eeEEEeeeeeeeeecCCCcCceEEEecccCCccccCcchhhhhhccccccCc
Confidence 34444 6667776666644433 3444444444 3555433 478888 8899999999999999999
Q ss_pred CHHHHHHhhhhccCc
Q 030138 160 VQICGLTWEMTDSNI 174 (182)
Q Consensus 160 s~~eAA~REl~ee~~ 174 (182)
...+-|..|--||-=
T Consensus 179 gI~eT~iKE~~EEAn 193 (306)
T KOG4313|consen 179 GIKETAIKEAAEEAN 193 (306)
T ss_pred hHHHHHHHHHHHhcC
Confidence 999999999777643
No 88
>PLN03143 nudix hydrolase; Provisional
Probab=95.22 E-value=0.067 Score=47.85 Aligned_cols=80 Identities=15% Similarity=0.079 Sum_probs=46.9
Q ss_pred EeecCCcEEeeee-chh-ch--hhhccccCCc-c-E-EEEEEEEE-cCCCc---EEEEeecC-CC--ceecccccCcCC-
Q 030138 93 LVDENDRVVGHEN-KYN-CH--LMEKIESLNL-L-H-RAFSVFLF-NSKYE---LLLQVCLF-CI--LWVKTCLSMDCH- 157 (182)
Q Consensus 93 LVDe~d~~iG~~~-R~~-~H--r~e~i~~~GL-l-H-RAfsVfLF-Ns~Ge---LLLQq~~f-Pg--lWDnTcgGHpla- 157 (182)
=||--++-+|-.. |.+ +. -|+.++ |. + | .++.|++. +.+|+ +|+.|..+ .| .|.+- ||.+..
T Consensus 94 ~vd~fg~~~gflkv~~d~~~l~~G~~~~--~~v~~rg~aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~P-AG~lD~~ 170 (291)
T PLN03143 94 GVDMFGKRIGFLKFKADIIDKETGQKVP--GIVFARGPAVAVLILLESEGETYAVLTEQVRVPVGKFVLELP-AGMLDDD 170 (291)
T ss_pred EEecccCceeEEEEEEEEEECCCCCEee--EEEEEcCCeEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEec-ccccCCC
Confidence 4677777788622 211 21 123332 22 2 2 37777765 55666 44555222 23 45554 566776
Q ss_pred CCCHHHHHHhhhhccCce
Q 030138 158 WVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 158 GEs~~eAA~REl~ee~~~ 175 (182)
+|+.+++|.|||+||=+.
T Consensus 171 ~edp~~aA~REL~EETG~ 188 (291)
T PLN03143 171 KGDFVGTAVREVEEETGI 188 (291)
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 489999999999998665
No 89
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=94.96 E-value=0.06 Score=44.23 Aligned_cols=53 Identities=11% Similarity=-0.099 Sum_probs=41.2
Q ss_pred cEEEEEEEEEcCCCc----EEEEeecCCCceecccccCcCCCCCHHHHHHhhhhccCc
Q 030138 121 LHRAFSVFLFNSKYE----LLLQVCLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNI 174 (182)
Q Consensus 121 lHRAfsVfLFNs~Ge----LLLQq~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~ 174 (182)
+-++..|+.|..+++ ||||-...|-.|..- .||+-.+|+..+||.||.-||-+
T Consensus 8 ~r~vagCi~~r~~~~~ieVLlvsSs~~~~~wi~P-KGGwE~dE~~~eAA~REt~EEAG 64 (145)
T KOG2839|consen 8 FRLVAGCICYRSDKEKIEVLLVSSSKKPHRWIVP-KGGWEPDESVEEAALRETWEEAG 64 (145)
T ss_pred cEEEEEeeeeeecCcceEEEEEecCCCCCCccCC-CCCCCCCCCHHHHHHHHHHHHhC
Confidence 445566667766663 666654468888888 89999999999999999999865
No 90
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=94.73 E-value=0.12 Score=44.97 Aligned_cols=49 Identities=6% Similarity=-0.104 Sum_probs=33.2
Q ss_pred EEEE-EEcCCCc--EEEEe---ecCCCc-eecccccCcCCCCCHHHHHHhhhhccCc
Q 030138 125 FSVF-LFNSKYE--LLLQV---CLFCIL-WVKTCLSMDCHWVVQICGLTWEMTDSNI 174 (182)
Q Consensus 125 fsVf-LFNs~Ge--LLLQq---~~fPgl-WDnTcgGHplaGEs~~eAA~REl~ee~~ 174 (182)
|.|+ +...+|+ ++||| ....++ ...- +|-+..||+..+||.|||+||-+
T Consensus 76 VaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElP-AGLiD~ge~~~~aAiREl~EEtG 131 (225)
T KOG3041|consen 76 VAILAILESDGKPYIVLVKQFRPPTGKICIELP-AGLIDDGEDFEGAAIRELEEETG 131 (225)
T ss_pred EEEEEEEecCCcEEEEEEEeecCCCCcEEEEcc-cccccCCCchHHHHHHHHHHHhC
Confidence 4444 3455775 78887 111121 2222 68999999999999999999854
No 91
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=93.78 E-value=0.07 Score=48.16 Aligned_cols=93 Identities=17% Similarity=0.049 Sum_probs=59.9
Q ss_pred ccHHHHHhhhc---CeEEEee-cCCcEEeeeechhchhhhccccCCccEE-EEEEEEEcCCCcEEEEe-----ecCCCce
Q 030138 78 MDAVQRRLMFE---DECILVD-ENDRVVGHENKYNCHLMEKIESLNLLHR-AFSVFLFNSKYELLLQV-----CLFCILW 147 (182)
Q Consensus 78 ~d~~Q~~~M~e---E~vdLVD-e~d~~iG~~~R~~~Hr~e~i~~~GLlHR-AfsVfLFNs~GeLLLQq-----~~fPglW 147 (182)
+-++|.++.++ +-++..- +.+.+.|...-.+.- -++| -+-=|+ .+..||+|.++++|+=| ...+|.|
T Consensus 69 l~~~~~~lV~~a~~~gf~~hHae~~~~~l~~Wl~e~~--~~lP-~~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~w 145 (295)
T KOG0648|consen 69 LPEELARLVEEAAKYGFDYHHAESLYVMLTSWLREAP--STLP-ANASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGW 145 (295)
T ss_pred chHHHHhHHHHHHhcCcEEecccccceeeeeeecccc--ccCC-CchhhheeeeeeEecCCceeEEEEecccceeecccc
Confidence 44555555432 2344443 344445543332222 2333 222344 47889999998866655 5689999
Q ss_pred ecccccCcCCCCCHHHHHHhhhhccCc
Q 030138 148 VKTCLSMDCHWVVQICGLTWEMTDSNI 174 (182)
Q Consensus 148 DnTcgGHplaGEs~~eAA~REl~ee~~ 174 (182)
-.-. |-+..||+..+||.||++||-+
T Consensus 146 K~pt-G~v~~~e~i~~gavrEvkeetg 171 (295)
T KOG0648|consen 146 KLPT-GRVEEGEDIWHGAVREVKEETG 171 (295)
T ss_pred cccc-eEecccccchhhhhhhhHHHhC
Confidence 9995 5999999999999999999865
No 92
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=90.18 E-value=0.66 Score=34.20 Aligned_cols=42 Identities=17% Similarity=0.119 Sum_probs=27.0
Q ss_pred EEEEcCCCcEEEEe----ecCCCceecccccCcCCCCCHHHHHHhhhh
Q 030138 127 VFLFNSKYELLLQV----CLFCILWVKTCLSMDCHWVVQICGLTWEMT 170 (182)
Q Consensus 127 VfLFNs~GeLLLQq----~~fPglWDnTcgGHplaGEs~~eAA~REl~ 170 (182)
+++.+.+|++|||| ..+-|+|+.-.--. .++...+++.+.+.
T Consensus 2 ~~i~~~~~~~Ll~kRp~~gll~GLwefP~~e~--~~~~~~~~l~~~~~ 47 (114)
T PF14815_consen 2 LLIIRSQGRVLLEKRPEKGLLAGLWEFPLIES--DEEDDEEELEEWLE 47 (114)
T ss_dssp EEEEETTSEEEEEE--SSSTTTT-EE--EEE---SSS-CHHHHHHHTC
T ss_pred EEEEEeCCEEEEEECCCCChhhcCcccCEeCc--cCCCCHHHHHHHHH
Confidence 57889999999999 77999999985443 24444555655553
No 93
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=82.22 E-value=1.8 Score=37.01 Aligned_cols=53 Identities=11% Similarity=-0.069 Sum_probs=40.0
Q ss_pred ccEEEEEEEEEcCCCcEEEEe-------ecCCCceecccccCcCCCCCH--HH-----HHHhhhhccC
Q 030138 120 LLHRAFSVFLFNSKYELLLQV-------CLFCILWVKTCLSMDCHWVVQ--IC-----GLTWEMTDSN 173 (182)
Q Consensus 120 LlHRAfsVfLFNs~GeLLLQq-------~~fPglWDnTcgGHplaGEs~--~e-----AA~REl~ee~ 173 (182)
.-..+-+|+|-|.+ ++||-. ...-|++.+.+|||.-.|+.. .+ -+.|||+||-
T Consensus 59 ~KQ~IpYvvi~~ed-evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv 125 (203)
T COG4112 59 TKQVIPYVVIMDED-EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEV 125 (203)
T ss_pred ccccccEEEEecCC-EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHh
Confidence 34456688888887 777765 667889999999999887653 22 2889999884
No 94
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=71.40 E-value=9 Score=34.10 Aligned_cols=52 Identities=13% Similarity=-0.151 Sum_probs=36.6
Q ss_pred EEEEEEEEcC-CC--cEEEEe-----ecCCCceecccccCcCCC-CCHHHHHHhhhhccCce
Q 030138 123 RAFSVFLFNS-KY--ELLLQV-----CLFCILWVKTCLSMDCHW-VVQICGLTWEMTDSNIL 175 (182)
Q Consensus 123 RAfsVfLFNs-~G--eLLLQq-----~~fPglWDnTcgGHplaG-Es~~eAA~REl~ee~~~ 175 (182)
-+|-|.|++. +| ++|||| ..+||---.- ||-.... ++...+|.||-.||=++
T Consensus 44 ~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fP-GG~~d~~D~s~~~tAlREt~EEIGl 104 (246)
T KOG3069|consen 44 AAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFP-GGRRDPHDKSDIQTALRETEEEIGL 104 (246)
T ss_pred ccEEEEEEEcCCCceEEEEEeccccccccCCceeCC-CCcCCccccchHHHHHHHHHHHhCC
Confidence 3677788876 55 589998 5577766666 5555554 45556999999998554
No 95
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=59.14 E-value=13 Score=31.86 Aligned_cols=55 Identities=20% Similarity=0.114 Sum_probs=36.3
Q ss_pred ccCCccEEEEEEEEEcCCCc---EEEEeecCCCceecccccCcCCCCCHHHHHHhhhhccC
Q 030138 116 ESLNLLHRAFSVFLFNSKYE---LLLQVCLFCILWVKTCLSMDCHWVVQICGLTWEMTDSN 173 (182)
Q Consensus 116 ~~~GLlHRAfsVfLFNs~Ge---LLLQq~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~ 173 (182)
++.|+.+-+-.|+|....|- ||||.. ...|..- ||-...||++.++.+|-|++-.
T Consensus 38 ~~~GmRrsVe~Vllvh~h~~PHvLLLq~~--~~~fkLP-Gg~l~~gE~e~~gLkrkL~~~l 95 (188)
T PF13869_consen 38 EKEGMRRSVEGVLLVHEHGHPHVLLLQIG--NTFFKLP-GGRLRPGEDEIEGLKRKLTEKL 95 (188)
T ss_dssp HHHSSEEEEEEEEEEEETTEEEEEEEEET--TTEEE-S-EEE--TT--HHHHHHHHHHHHH
T ss_pred HHhCCceEEEEEEEEecCCCcEEEEEecc--CccccCC-ccEeCCCCChhHHHHHHHHHHc
Confidence 34688777777888887774 788861 1134444 7899999999999999998643
No 96
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=50.69 E-value=28 Score=28.85 Aligned_cols=33 Identities=9% Similarity=-0.130 Sum_probs=28.1
Q ss_pred CCceecccccCcCCCCCHHHHHHhhhhccCceEE
Q 030138 144 CILWVKTCLSMDCHWVVQICGLTWEMTDSNILFV 177 (182)
Q Consensus 144 PglWDnTcgGHplaGEs~~eAA~REl~ee~~~~~ 177 (182)
-|-|.+- -|-...||++..||+||.-||-+.-|
T Consensus 35 ~GAWSIP-KGey~~gEdp~~AArREf~EE~Gi~v 67 (161)
T COG4119 35 DGAWSIP-KGEYTGGEDPWLAARREFSEEIGICV 67 (161)
T ss_pred CCccccc-ccccCCCcCHHHHHHHHhhhhhceee
Confidence 4779988 57899999999999999999876544
No 97
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=45.54 E-value=23 Score=22.24 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=18.0
Q ss_pred CeEEEeecCCcEEeeeechhc
Q 030138 89 DECILVDENDRVVGHENKYNC 109 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~ 109 (182)
..+.++|++++++|..++.+.
T Consensus 31 ~~~~V~d~~~~~~G~is~~dl 51 (57)
T PF00571_consen 31 SRLPVVDEDGKLVGIISRSDL 51 (57)
T ss_dssp SEEEEESTTSBEEEEEEHHHH
T ss_pred cEEEEEecCCEEEEEEEHHHH
Confidence 458999999999999888654
No 98
>PRK10880 adenine DNA glycosylase; Provisional
Probab=43.33 E-value=30 Score=31.83 Aligned_cols=31 Identities=23% Similarity=0.189 Sum_probs=24.7
Q ss_pred ccEEEEEEEEEcCCCcEEEEe----ecCCCceecc
Q 030138 120 LLHRAFSVFLFNSKYELLLQV----CLFCILWVKT 150 (182)
Q Consensus 120 LlHRAfsVfLFNs~GeLLLQq----~~fPglWDnT 150 (182)
...+...++|+..+|++||+| ..|.|+|..-
T Consensus 228 ~~~~~~~~~~~~~~~~~~l~~r~~~gl~~gl~~fP 262 (350)
T PRK10880 228 LPERTGYFLLLQHGDEVWLEQRPPSGLWGGLFCFP 262 (350)
T ss_pred CCeEEEEEEEEEECCEEEEEECCccChhhccccCC
Confidence 456677777777788999998 5799999976
No 99
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=42.56 E-value=24 Score=24.15 Aligned_cols=49 Identities=12% Similarity=0.128 Sum_probs=28.0
Q ss_pred EEEeecCCcEEeeeec--hhchhhhccccCCccEEEEEEEEEcCCCcEEEEe
Q 030138 91 CILVDENDRVVGHENK--YNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQV 140 (182)
Q Consensus 91 vdLVDe~d~~iG~~~R--~~~Hr~e~i~~~GLlHRAfsVfLFNs~GeLLLQq 140 (182)
.-++|++++++|...- ..-...+-+. +-.+-.-=++||+|.+|+++.+.
T Consensus 19 ~pi~~~~g~~~Gvv~~di~l~~l~~~i~-~~~~~~~g~~~ivd~~G~ii~hp 69 (81)
T PF02743_consen 19 VPIYDDDGKIIGVVGIDISLDQLSEIIS-NIKFGNNGYAFIVDKNGTIIAHP 69 (81)
T ss_dssp EEEEETTTEEEEEEEEEEEHHHHHHHHT-TSBBTTTBEEEEEETTSBBCE-S
T ss_pred EEEECCCCCEEEEEEEEeccceeeeEEE-eeEECCCEEEEEEECCCCEEEeC
Confidence 5678889999997432 1101111111 11122234799999999999886
No 100
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=41.97 E-value=36 Score=30.08 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=25.0
Q ss_pred CccEEEEEEEEE-cCCCcEEEEe----ecCCCceeccc
Q 030138 119 NLLHRAFSVFLF-NSKYELLLQV----CLFCILWVKTC 151 (182)
Q Consensus 119 GLlHRAfsVfLF-Ns~GeLLLQq----~~fPglWDnTc 151 (182)
-.-++.+.+++. +.+|++|||| ..+.|+|..-.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~gl~~~p~ 260 (275)
T TIGR01084 223 APPERTTYFLVLQNYDGEVLLEQRPEKGLWGGLYCFPQ 260 (275)
T ss_pred CCCeEEEEEEEEEeCCCeEEEEeCCCCchhhccccCCC
Confidence 345777777764 6689999998 57899999873
No 101
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=34.04 E-value=56 Score=22.52 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=16.7
Q ss_pred CeEEEeecCCcEEeeeechhc
Q 030138 89 DECILVDENDRVVGHENKYNC 109 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~ 109 (182)
+.+.++|++++++|..++.+.
T Consensus 93 ~~~~Vv~~~~~~~Gvit~~di 113 (116)
T cd04643 93 PFLPVVDDDGIFIGIITRREI 113 (116)
T ss_pred CceeEEeCCCeEEEEEEHHHh
Confidence 457788999999999887543
No 102
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=33.25 E-value=43 Score=23.79 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=18.3
Q ss_pred CeEEEeecCCcEEeeeechhch
Q 030138 89 DECILVDENDRVVGHENKYNCH 110 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~H 110 (182)
..+.++|++++++|..++.+..
T Consensus 100 ~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 100 SSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred ceEEEECCCCcEEEEEeHHHhh
Confidence 4688999999999999886653
No 103
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=31.60 E-value=73 Score=28.67 Aligned_cols=51 Identities=10% Similarity=-0.050 Sum_probs=38.9
Q ss_pred EEEEEEEcCCCcE-------EEEe----ecCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 124 AFSVFLFNSKYEL-------LLQV----CLFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 124 AfsVfLFNs~GeL-------LLQq----~~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
+|.=|=.|++|-+ +||- ..--|.|.+- ||.+.+||-.-.-++||+.||-.+
T Consensus 118 iVtRwkrd~~gai~~~sgk~ile~vavkr~d~~~WAiP-GGmvdpGE~vs~tLkRef~eEa~n 179 (275)
T KOG4195|consen 118 IVTRWKRDEDGAICRKSGKKILEFVAVKRPDNGEWAIP-GGMVDPGEKVSATLKREFGEEAMN 179 (275)
T ss_pred ceeeeeecCCCCeeecccceeeEEEEEecCCCCcccCC-CCcCCchhhhhHHHHHHHHHHHHH
Confidence 4566667777732 2332 3357899998 999999999999999999998654
No 104
>smart00359 PUA Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase.
Probab=31.23 E-value=52 Score=22.11 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=15.2
Q ss_pred cCeEEEeecCCcEEeee
Q 030138 88 EDECILVDENDRVVGHE 104 (182)
Q Consensus 88 eE~vdLVDe~d~~iG~~ 104 (182)
.|.+.|+|++++++|..
T Consensus 34 g~~V~v~~~~g~~vg~G 50 (77)
T smart00359 34 GDVVVIVDEKGEPLGIG 50 (77)
T ss_pred CCEEEEEcCCCCEEEEE
Confidence 57999999999999984
No 105
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=30.74 E-value=51 Score=22.87 Aligned_cols=21 Identities=10% Similarity=0.227 Sum_probs=17.7
Q ss_pred CeEEEeecCCcEEeeeechhc
Q 030138 89 DECILVDENDRVVGHENKYNC 109 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~ 109 (182)
+.+.++|++++++|..++...
T Consensus 92 ~~~pVvd~~~~~~Gvit~~dl 112 (115)
T cd04620 92 RHLPVLDDQGQLIGLVTAESI 112 (115)
T ss_pred ceEEEEcCCCCEEEEEEhHHh
Confidence 568899999999999988654
No 106
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=30.18 E-value=73 Score=21.56 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=16.3
Q ss_pred eEEEeecCCcEEeeeechhc
Q 030138 90 ECILVDENDRVVGHENKYNC 109 (182)
Q Consensus 90 ~vdLVDe~d~~iG~~~R~~~ 109 (182)
.+.++|++++++|..++.+.
T Consensus 88 ~~~vv~~~~~~~Gvvt~~di 107 (110)
T cd04609 88 VAVVVDEGGKFVGIITRADL 107 (110)
T ss_pred ceeEEecCCeEEEEEeHHHh
Confidence 46778999999999888665
No 107
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=29.75 E-value=56 Score=22.96 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=17.2
Q ss_pred CeEEEeecCCcEEeeeechhc
Q 030138 89 DECILVDENDRVVGHENKYNC 109 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~ 109 (182)
+.+-++|++++++|..++.++
T Consensus 91 ~~lpVvd~~~~~~Gvi~~~dl 111 (114)
T cd04619 91 KNIPVVDENARPLGVLNARDA 111 (114)
T ss_pred CeEEEECCCCcEEEEEEhHhh
Confidence 468889999999999888543
No 108
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=29.49 E-value=54 Score=22.30 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=16.8
Q ss_pred CeEEEeecCCcEEeeeechhc
Q 030138 89 DECILVDENDRVVGHENKYNC 109 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~ 109 (182)
..+.++|++++++|..++...
T Consensus 83 ~~~~Vv~~~~~~~Gvi~~~~l 103 (106)
T cd04582 83 SWLPCVDEDGRYVGEVTQRSI 103 (106)
T ss_pred CeeeEECCCCcEEEEEEHHHh
Confidence 347788999999999888543
No 109
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=29.43 E-value=56 Score=23.08 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=17.3
Q ss_pred CeEEEeecCCcEEeeeechhc
Q 030138 89 DECILVDENDRVVGHENKYNC 109 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~ 109 (182)
+.+.++|++++++|..++.+.
T Consensus 97 ~~l~Vvd~~~~~~Givt~~di 117 (120)
T cd04641 97 HRLVVVDENKRVEGIISLSDI 117 (120)
T ss_pred cEEEEECCCCCEEEEEEHHHh
Confidence 468889999999999988653
No 110
>PRK13910 DNA glycosylase MutY; Provisional
Probab=29.20 E-value=64 Score=28.91 Aligned_cols=27 Identities=7% Similarity=0.081 Sum_probs=19.4
Q ss_pred EEEEEEEEcCCCcEEEEe---ecCCCceecc
Q 030138 123 RAFSVFLFNSKYELLLQV---CLFCILWVKT 150 (182)
Q Consensus 123 RAfsVfLFNs~GeLLLQq---~~fPglWDnT 150 (182)
+...++|. .+|++|||| ..|.|+|..-
T Consensus 187 ~~~~~~~~-~~~~~ll~kr~~~l~~gl~~fP 216 (289)
T PRK13910 187 ERYLGVVI-QNNQIALEKIEQKLYLGMHHFP 216 (289)
T ss_pred EEEEEEEE-ECCEEEEEECCCchhcccccCC
Confidence 44444454 467999998 6799999966
No 111
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=28.92 E-value=61 Score=22.04 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=17.1
Q ss_pred CeEEEeecCCcEEeeeechhc
Q 030138 89 DECILVDENDRVVGHENKYNC 109 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~ 109 (182)
+.+.++|++++++|..++.+.
T Consensus 87 ~~~~Vv~~~~~~~Gvi~~~di 107 (110)
T cd04601 87 EKLPVVDDEGKLKGLITVKDI 107 (110)
T ss_pred CeeeEEcCCCCEEEEEEhhhh
Confidence 457889999999999888654
No 112
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=28.13 E-value=57 Score=23.70 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=19.3
Q ss_pred CeEEEeecCCcEEeeeechhchhhh
Q 030138 89 DECILVDENDRVVGHENKYNCHLME 113 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~Hr~e 113 (182)
..|-|||++|+.+|..++.++-+..
T Consensus 13 ~~VrlI~~~g~~lGv~~~~eAl~~A 37 (76)
T PF05198_consen 13 PEVRLIDEDGEQLGVMSLREALRLA 37 (76)
T ss_dssp SEEEEE-TTS-EEEEEEHHHHHHHH
T ss_pred CEEEEECCCCcEeceEEHHHHHHHH
Confidence 4689999999999999998886643
No 113
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=27.97 E-value=64 Score=22.15 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=17.6
Q ss_pred CeEEEeecCCcEEeeeechhc
Q 030138 89 DECILVDENDRVVGHENKYNC 109 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~ 109 (182)
..+.++|++++++|..++.+.
T Consensus 88 ~~~~Vv~~~~~~~Gvit~~di 108 (111)
T cd04590 88 HMAIVVDEYGGTAGLVTLEDI 108 (111)
T ss_pred cEEEEEECCCCEEEEeEHHHh
Confidence 467889999999999988665
No 114
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=27.83 E-value=71 Score=25.34 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=14.6
Q ss_pred EEEEEEEcCCCcEEEEeec
Q 030138 124 AFSVFLFNSKYELLLQVCL 142 (182)
Q Consensus 124 AfsVfLFNs~GeLLLQq~~ 142 (182)
+.++||||..|.++.|+..
T Consensus 1 IyslyI~nr~G~lIy~~~~ 19 (142)
T PF04099_consen 1 IYSLYIFNRSGGLIYYREW 19 (142)
T ss_dssp EEEEEEE-TTS-EEEEEET
T ss_pred CeEEEEEeCCcceeeehhh
Confidence 4789999999999999943
No 115
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=27.82 E-value=59 Score=22.46 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=17.3
Q ss_pred CeEEEeecCCcEEeeeechhc
Q 030138 89 DECILVDENDRVVGHENKYNC 109 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~ 109 (182)
+.+.++|++++++|..++.+.
T Consensus 85 ~~~~Vv~~~~~~~Gvit~~dl 105 (109)
T cd04606 85 LALPVVDEEGRLVGIITVDDV 105 (109)
T ss_pred ceeeeECCCCcEEEEEEhHHh
Confidence 467889999999999888554
No 116
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=27.18 E-value=54 Score=22.94 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=17.9
Q ss_pred CeEEEeecCCcEEeeeechhc
Q 030138 89 DECILVDENDRVVGHENKYNC 109 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~ 109 (182)
+.+.+||++++++|..++...
T Consensus 91 ~~~pVv~~~~~~~Gvit~~di 111 (114)
T cd04602 91 GKLPIVNDDGELVALVTRSDL 111 (114)
T ss_pred CceeEECCCCeEEEEEEHHHh
Confidence 568899999999999988654
No 117
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=26.95 E-value=55 Score=18.22 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=16.5
Q ss_pred CeEEEeecCCcEEeeeechhc
Q 030138 89 DECILVDENDRVVGHENKYNC 109 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~ 109 (182)
..+.++|++++++|..++.+.
T Consensus 24 ~~~~v~~~~~~~~g~i~~~~l 44 (49)
T smart00116 24 RRLPVVDEEGRLVGIVTRRDI 44 (49)
T ss_pred CcccEECCCCeEEEEEEHHHH
Confidence 357788988999999877554
No 118
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=26.63 E-value=1.1e+02 Score=26.61 Aligned_cols=51 Identities=18% Similarity=-0.012 Sum_probs=35.2
Q ss_pred CCccEEEEEEEEEcCCC---cEEEEe-e---cCCCceecccccCcCCCCCHHHHHHhhhhccCce
Q 030138 118 LNLLHRAFSVFLFNSKY---ELLLQV-C---LFCILWVKTCLSMDCHWVVQICGLTWEMTDSNIL 175 (182)
Q Consensus 118 ~GLlHRAfsVfLFNs~G---eLLLQq-~---~fPglWDnTcgGHplaGEs~~eAA~REl~ee~~~ 175 (182)
.|...-+=.|+|..... -||||- - -.| ||-...||++.++.+|=|+|..++
T Consensus 66 ~gmRrsvegvlivheH~lPHvLLLQig~tf~KLP-------GG~L~pGE~e~~Gl~r~l~~~Lgr 123 (221)
T KOG1689|consen 66 EGMRRSVEGVLIVHEHNLPHVLLLQIGNTFFKLP-------GGRLRPGEDEADGLKRLLTESLGR 123 (221)
T ss_pred hhhhheeeeeEEEeecCCCeEEEEeeCCEEEecC-------CCccCCCcchhHHHHHHHHHHhcc
Confidence 34444445555554432 367776 2 234 699999999999999999998763
No 119
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=26.45 E-value=66 Score=22.55 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=13.2
Q ss_pred eEEEeecCCcEEeee
Q 030138 90 ECILVDENDRVVGHE 104 (182)
Q Consensus 90 ~vdLVDe~d~~iG~~ 104 (182)
.|+|+|++|+++|..
T Consensus 47 rV~V~~~~G~~l~~~ 61 (66)
T PF11141_consen 47 RVEVVDEDGQVLGSL 61 (66)
T ss_pred EEEEEcCCCCEEEEE
Confidence 489999999999974
No 120
>PF08842 Mfa2: Fimbrillin-A associated anchor proteins Mfa1 and Mfa2; InterPro: IPR014941 This family of proteins may be lipoproteins principally from bacilli. They are between 300 and 400 residues. Many Bacteroides-like bacterial species, including Porphyromonas gingivalis, the causal agent of periodontal infection, carry at least two types of fimbriae, namely FimA and Mfa1 fimbriae, following the names of their major subunit proteins []. Normally, FimA fimbriae are long filaments that are easily detached from cells, whereas Mfa1 fimbriae are short filaments that are tightly bound to cells; however, in the absence of Mfa2 protein, the Mfa1 fimbriae are also very long and are not attached. Mfa2 and Mfa1 are associated with each other in whole P. gingivalis cells to the extent that Mfa2 is located on the cell surface and probably associated with Mfa1 fimbriae in such a way that it anchors the Mfa1 fimbriae to the cell surface and regulates Mfa1 filament length [].; PDB: 3PAY_C 3GF8_A.
Probab=26.34 E-value=71 Score=26.19 Aligned_cols=17 Identities=18% Similarity=0.397 Sum_probs=13.1
Q ss_pred EEEEEEEcCCCcEEEEe
Q 030138 124 AFSVFLFNSKYELLLQV 140 (182)
Q Consensus 124 AfsVfLFNs~GeLLLQq 140 (182)
-+.|++||.+|+++-|+
T Consensus 30 ~v~lyvFd~~g~~v~~~ 46 (283)
T PF08842_consen 30 RVDLYVFDEDGKLVKQR 46 (283)
T ss_dssp EEEEEEE-TTSBEEEEE
T ss_pred EEEEEEEeCCCeEEEEE
Confidence 48999999999966665
No 121
>PF13585 CHU_C: C-terminal domain of CHU protein family; PDB: 3EIF_A 1XF1_B.
Probab=26.09 E-value=61 Score=23.45 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=18.5
Q ss_pred EEEEEEEEEcCCCcEEEEeecCCCceeccccc
Q 030138 122 HRAFSVFLFNSKYELLLQVCLFCILWVKTCLS 153 (182)
Q Consensus 122 HRAfsVfLFNs~GeLLLQq~~fPglWDnTcgG 153 (182)
..-+++.|||.-|+++.+...+...||-+.-|
T Consensus 26 ~~~~~~~IynrwG~~Vf~~~~~~~~WdG~~~g 57 (87)
T PF13585_consen 26 IPNYSLTIYNRWGELVFESNDYNNGWDGTYNG 57 (87)
T ss_dssp EEEEEEEEE-SSS-EEEE---EEG-B-SB-T-
T ss_pred cceeEEEEEeCCCcEEEEECCCCCCCCCEecC
Confidence 44589999999999999984445777777654
No 122
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=25.73 E-value=68 Score=21.75 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=17.6
Q ss_pred CeEEEeecCCcEEeeeechhc
Q 030138 89 DECILVDENDRVVGHENKYNC 109 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~ 109 (182)
..+.++|++++++|..++.+.
T Consensus 86 ~~~~vv~~~g~~~Gvit~~~l 106 (109)
T cd04583 86 KYVPVVDEDGKLVGLITRSSL 106 (109)
T ss_pred ceeeEECCCCeEEEEEehHHh
Confidence 568899999999999888654
No 123
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=25.57 E-value=69 Score=22.08 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=18.2
Q ss_pred CeEEEeecCCcEEeeeechhch
Q 030138 89 DECILVDENDRVVGHENKYNCH 110 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~H 110 (182)
+.+.++|++++++|..++.+..
T Consensus 85 ~~~~Vv~~~~~~~G~it~~di~ 106 (108)
T cd04596 85 EMLPVVDDNKKLLGIISRQDVL 106 (108)
T ss_pred CeeeEEcCCCCEEEEEEHHHhh
Confidence 5678899999999998886654
No 124
>PF08918 PhoQ_Sensor: PhoQ Sensor; InterPro: IPR015014 The PhoQ Sensor is required for the virulence of various Gram-negative bacteria by allowing interaction of PhoPQ with the intracellular membrane, resulting in remodelling of the bacterial cell surface and subsequent bacterial resistance to host antimicrobial peptides. The domain contains a major flat acidic surface, which binds to at least 3 calcium ions, neutralising the domain's negative charge and allowing interaction with the negatively charged membrane []. ; GO: 0004673 protein histidine kinase activity, 0005524 ATP binding, 0046872 metal ion binding, 0000160 two-component signal transduction system (phosphorelay), 0018106 peptidyl-histidine phosphorylation, 0016020 membrane; PDB: 1YAX_D 3BQA_B 3BQ8_B.
Probab=25.51 E-value=84 Score=26.90 Aligned_cols=55 Identities=15% Similarity=-0.032 Sum_probs=34.1
Q ss_pred EEEEEEcCCCcEEEEe--------------ecCCCceeccc----ccCcCCCCCHHHHHHhhhhccCceEEEee
Q 030138 125 FSVFLFNSKYELLLQV--------------CLFCILWVKTC----LSMDCHWVVQICGLTWEMTDSNILFVMTH 180 (182)
Q Consensus 125 fsVfLFNs~GeLLLQq--------------~~fPglWDnTc----gGHplaGEs~~eAA~REl~ee~~~~~~t~ 180 (182)
.-++|||.+|+||-+| -.=||++++.. ..-++.+....+.=-+++++.+ .--|||
T Consensus 75 tL~~IYD~~G~lLW~qr~vP~l~~~I~~~WL~k~gf~Eidtd~~~s~~~l~~n~~~q~~L~~~~~~~-~~~lTH 147 (180)
T PF08918_consen 75 TLVLIYDENGKLLWRQRDVPELEKRIQPEWLKKNGFYEIDTDVDTSSALLGNNPQAQSQLKDYDDDD-DDELTH 147 (180)
T ss_dssp EEEEEEETTS-EEEESS--HHHHCCS-GGGGGSSEEEEEEEEHHHHHCCCSTTCCCHHHHHHHHH-T-T-EEEE
T ss_pred eEEEEEcCCCcEEEecCccHHHHHhcCHHHccCCCceEEecCcchHHHHhcCCHHHHHHHHhccCCC-cccceE
Confidence 4579999999999998 22356665432 3455666666666667775544 444787
No 125
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=25.46 E-value=75 Score=22.02 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=17.1
Q ss_pred CeEEEeecCCcEEeeeechhc
Q 030138 89 DECILVDENDRVVGHENKYNC 109 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~ 109 (182)
..+.++|++++++|..++.+.
T Consensus 90 ~~~~Vv~~~~~~~Gvit~~di 110 (113)
T cd04607 90 RHLPILDEEGRVVGLATLDDL 110 (113)
T ss_pred CEEEEECCCCCEEEEEEhHHh
Confidence 458899999999999888553
No 126
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=25.34 E-value=67 Score=22.11 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=17.5
Q ss_pred CeEEEeecCCcEEeeeechhc
Q 030138 89 DECILVDENDRVVGHENKYNC 109 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~ 109 (182)
+.+.++|++++++|..++.+.
T Consensus 90 ~~~~Vvd~~g~~~Gvvt~~dl 110 (113)
T cd04615 90 SRLPVLDDKGKVGGIVTEDDI 110 (113)
T ss_pred CeeeEECCCCeEEEEEEHHHh
Confidence 468889999999999888654
No 127
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=25.15 E-value=73 Score=22.31 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=17.2
Q ss_pred CeEEEeecCCcEEeeeechhc
Q 030138 89 DECILVDENDRVVGHENKYNC 109 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~ 109 (182)
+.+-++|.+++++|..++.+.
T Consensus 88 ~~lpVvd~~~~~~Giit~~di 108 (111)
T cd04603 88 PVVAVVDKEGKLVGTIYEREL 108 (111)
T ss_pred CeEEEEcCCCeEEEEEEhHHh
Confidence 457899999999999888654
No 128
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=25.02 E-value=70 Score=30.79 Aligned_cols=46 Identities=9% Similarity=0.026 Sum_probs=32.5
Q ss_pred CccEEEEEEEEEcCCCcEEEEeecCCCceecccccCcCCCCCHHHHHHhhh
Q 030138 119 NLLHRAFSVFLFNSKYELLLQVCLFCILWVKTCLSMDCHWVVQICGLTWEM 169 (182)
Q Consensus 119 GLlHRAfsVfLFNs~GeLLLQq~~fPglWDnTcgGHplaGEs~~eAA~REl 169 (182)
-.+||+=-+||||++|+=+| +.|.|.|+.+| ||= .....+|+..-+
T Consensus 34 l~Iv~~~~~ylyDe~G~ryL--D~f~Gi~tvsl-GHc--hP~v~~a~~kQl 79 (442)
T KOG1404|consen 34 LVIVRGEGQYLYDEEGRRYL--DAFGGIVTVSL-GHC--HPDVVAAAVKQL 79 (442)
T ss_pred ceEEecceEEEEcCCCceee--hhhCCeEEEEc-CCC--ChHHHHHHHHhh
Confidence 45888999999999997554 67999999986 542 223445554444
No 129
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=24.99 E-value=1.3e+02 Score=26.32 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=25.4
Q ss_pred EEEeecCCcEEeeeechhchhhhccccCCccEEEEEEEEEcCCCcEE
Q 030138 91 CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELL 137 (182)
Q Consensus 91 vdLVDe~d~~iG~~~R~~~Hr~e~i~~~GLlHRAfsVfLFNs~GeLL 137 (182)
-++||+.+++--+..+... ..+.-+..+.+.+-|+|.|||++-+++
T Consensus 284 ~l~yD~~r~vYyRf~~~~~-~~~~~~~~~~~~k~~sl~i~D~dfnii 329 (333)
T PF13970_consen 284 PLLYDKYRKVYYRFAYPPI-EDDKDPEELPWGKPFSLIIFDKDFNII 329 (333)
T ss_dssp EEEEETTTTEEEEEEE-----TTS-TTS--TT--EEEEEE-TT--EE
T ss_pred ceeEcchhCEEEEEeeccc-CCcccccccccCCCEEEEEECCcccee
Confidence 6899999999887655433 111111245679999999999998875
No 130
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=24.51 E-value=74 Score=22.73 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=17.4
Q ss_pred CeEEEeecCCcEEeeeechhc
Q 030138 89 DECILVDENDRVVGHENKYNC 109 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~ 109 (182)
..+.++|++++++|..++.+.
T Consensus 103 ~~l~Vvd~~~~~~Giit~~di 123 (126)
T cd04642 103 HRVWVVDEEGKPIGVITLTDI 123 (126)
T ss_pred cEEEEECCCCCEEEEEEHHHH
Confidence 458999999999999888654
No 131
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=24.30 E-value=81 Score=21.57 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=17.8
Q ss_pred CeEEEeecCCcEEeeeechhch
Q 030138 89 DECILVDENDRVVGHENKYNCH 110 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~H 110 (182)
+.+.++|++++++|..++.+..
T Consensus 91 ~~~~Vv~~~~~~iG~it~~di~ 112 (114)
T cd04604 91 TALPVVDDNGRPVGVLHIHDLL 112 (114)
T ss_pred CEEEEECCCCCEEEEEEHHHhh
Confidence 4678889899999998886653
No 132
>COG5428 Uncharacterized conserved small protein [Function unknown]
Probab=24.28 E-value=62 Score=23.75 Aligned_cols=19 Identities=42% Similarity=0.489 Sum_probs=16.5
Q ss_pred hhhcCeEEEeecCCcEEee
Q 030138 85 LMFEDECILVDENDRVVGH 103 (182)
Q Consensus 85 ~M~eE~vdLVDe~d~~iG~ 103 (182)
.|+++.++=+|++|+++|.
T Consensus 27 e~~edi~Idide~GkV~Gi 45 (69)
T COG5428 27 ELGEDILIDIDENGKVIGI 45 (69)
T ss_pred hcCCcEEEEecCCCcEEEE
Confidence 3677889999999999997
No 133
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=24.19 E-value=2.7e+02 Score=22.47 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=26.6
Q ss_pred cCeEEEeecCCcEEeeeec-hhchhhhccccCCccEEEEEEEEEcCCCcEEEEe----ecCCCceecccccC
Q 030138 88 EDECILVDENDRVVGHENK-YNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQV----CLFCILWVKTCLSM 154 (182)
Q Consensus 88 eE~vdLVDe~d~~iG~~~R-~~~Hr~e~i~~~GLlHRAfsVfLFNs~GeLLLQq----~~fPglWDnTcgGH 154 (182)
.+-+.|+|++|+++-...- +-.- +++ .+.|+|.+|+.|++- ..+-..|.+--+|.
T Consensus 27 ~~~f~V~D~~G~~vf~V~g~~~~s----------~~~--~~~l~D~~G~~L~~i~~k~~~l~~~w~i~~~~~ 86 (187)
T PF04525_consen 27 GDDFTVYDENGNVVFRVDGGKFFS----------IGK--KRTLMDASGNPLFTIRRKLFSLRPTWEIYRGGG 86 (187)
T ss_dssp ---EEEEETTS-EEEEEE--SCTT----------BTT--EEEEE-TTS-EEEEEE--------EEEEEETT-
T ss_pred CCCEEEEcCCCCEEEEEEEecccC----------CCC--EEEEECCCCCEEEEEEeeecccceEEEEEECCC
Confidence 4678899999998887544 1111 111 245688888877664 34556787765553
No 134
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=24.07 E-value=82 Score=17.74 Aligned_cols=19 Identities=16% Similarity=0.107 Sum_probs=13.3
Q ss_pred ccEEEEEEEEEcCCCcEEE
Q 030138 120 LLHRAFSVFLFNSKYELLL 138 (182)
Q Consensus 120 LlHRAfsVfLFNs~GeLLL 138 (182)
|-+-.+..++.|++|+|.+
T Consensus 2 L~~n~I~~i~~D~~G~lWi 20 (24)
T PF07494_consen 2 LPNNNIYSIYEDSDGNLWI 20 (24)
T ss_dssp BSSSCEEEEEE-TTSCEEE
T ss_pred CCCCeEEEEEEcCCcCEEE
Confidence 4455678888889888865
No 135
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=23.72 E-value=73 Score=21.93 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=17.1
Q ss_pred CeEEEeecCCcEEeeeechhc
Q 030138 89 DECILVDENDRVVGHENKYNC 109 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~ 109 (182)
+.+.++|++++++|..++.++
T Consensus 99 ~~~~Vv~~~~~~~Gvvt~~di 119 (122)
T cd04585 99 SGLPVVDDQGRLVGIITESDL 119 (122)
T ss_pred CceeEECCCCcEEEEEEHHHh
Confidence 458888998999999888654
No 136
>COG3501 VgrG Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.66 E-value=69 Score=31.33 Aligned_cols=27 Identities=11% Similarity=0.024 Sum_probs=25.2
Q ss_pred cCCCCCHHHHHHhhhhccCceEEEeec
Q 030138 155 DCHWVVQICGLTWEMTDSNILFVMTHK 181 (182)
Q Consensus 155 plaGEs~~eAA~REl~ee~~~~~~t~~ 181 (182)
+.++||..+-+.|=|.||+|-|.|+|.
T Consensus 153 vQy~EsD~~Fv~RL~~eeGi~~~feh~ 179 (550)
T COG3501 153 VQYDESDYDFLDRLLAEEGIFYAFEHD 179 (550)
T ss_pred hcccccHHHHHHHHHHhCCcEEEEEcc
Confidence 678999999999999999999999984
No 137
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=22.59 E-value=87 Score=21.29 Aligned_cols=20 Identities=15% Similarity=0.401 Sum_probs=16.2
Q ss_pred eEEEeecCCcEEeeeechhc
Q 030138 90 ECILVDENDRVVGHENKYNC 109 (182)
Q Consensus 90 ~vdLVDe~d~~iG~~~R~~~ 109 (182)
.+.++|++++++|..++...
T Consensus 89 ~~~Vv~~~~~~~Gvi~~~di 108 (111)
T cd04611 89 HLVVVDDDGELLGLLSQTDL 108 (111)
T ss_pred EEEEECCCCcEEEEEEhHHh
Confidence 57788999999999887543
No 138
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=22.03 E-value=73 Score=21.83 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=16.9
Q ss_pred CeEEEeecCCcEEeeeechhc
Q 030138 89 DECILVDENDRVVGHENKYNC 109 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~ 109 (182)
+.+.++|++++++|..++.++
T Consensus 90 ~~l~Vv~~~~~~~Gvvs~~dl 110 (113)
T cd04587 90 RHLPVVDKSGQVVGLLDVTKL 110 (113)
T ss_pred CcccEECCCCCEEEEEEHHHh
Confidence 357788999999999888654
No 139
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=21.98 E-value=88 Score=21.88 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=18.1
Q ss_pred CeEEEeecCCcEEeeeechhch
Q 030138 89 DECILVDENDRVVGHENKYNCH 110 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~H 110 (182)
..+.++|++++++|..++.++.
T Consensus 101 ~~~~Vv~~~g~~~Gvit~~di~ 122 (124)
T cd04600 101 HHVPVVDEDRRLVGIVTQTDLI 122 (124)
T ss_pred CceeEEcCCCCEEEEEEhHHhh
Confidence 4688999999999999886653
No 140
>PF13994 PgaD: PgaD-like protein
Probab=21.49 E-value=82 Score=24.80 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=19.4
Q ss_pred ccccHHHHHhhhcCeEEEe--ecCCcEEe
Q 030138 76 AGMDAVQRRLMFEDECILV--DENDRVVG 102 (182)
Q Consensus 76 ~~~d~~Q~~~M~eE~vdLV--De~d~~iG 102 (182)
-++++.|.+.|....+.+| |++|+++|
T Consensus 110 f~l~~~~l~~lr~~k~~~V~~d~~G~I~~ 138 (138)
T PF13994_consen 110 FGLSPEQLQQLRQAKVLTVHHDDHGRIIH 138 (138)
T ss_pred cCCCHHHHHHHHhCCeEEEEeCCCCCcCc
Confidence 3577888888887776666 56777664
No 141
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=21.36 E-value=88 Score=26.94 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.9
Q ss_pred CeEEEeecCCcEEeeeechhchh
Q 030138 89 DECILVDENDRVVGHENKYNCHL 111 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~Hr 111 (182)
+.+.|||++++++|..++.+.-+
T Consensus 295 ~~lpVvd~~~~lvGvIt~~di~~ 317 (321)
T PRK11543 295 TAAPVVDENGKLTGAINLQDFYQ 317 (321)
T ss_pred CEEEEEcCCCeEEEEEEHHHHHh
Confidence 56889999999999999987765
No 142
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=21.15 E-value=98 Score=21.69 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=16.7
Q ss_pred CeEEEeecCCcEEeeeechhc
Q 030138 89 DECILVDENDRVVGHENKYNC 109 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~ 109 (182)
..+.++|++++++|..++.+.
T Consensus 102 ~~~~V~~~~~~~~Gvit~~di 122 (125)
T cd04631 102 GGLPVVDDDGKLVGIVTERDL 122 (125)
T ss_pred ceEEEEcCCCcEEEEEEHHHh
Confidence 358888888999999888553
No 143
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=21.06 E-value=1.1e+02 Score=29.29 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=20.8
Q ss_pred cCeEEEeecCCcEEeeeechhchh
Q 030138 88 EDECILVDENDRVVGHENKYNCHL 111 (182)
Q Consensus 88 eE~vdLVDe~d~~iG~~~R~~~Hr 111 (182)
.+.+.+||++++++|..++.+.-+
T Consensus 192 i~~LPVVd~~g~liGIIT~~DIl~ 215 (495)
T PTZ00314 192 KGKLPIVNDNGELVALVSRSDLKK 215 (495)
T ss_pred CCeEEEEcCCCcEEEEEEehHhhh
Confidence 367899999999999999988765
No 144
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=20.72 E-value=1.6e+02 Score=20.71 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=21.1
Q ss_pred ccHHHHHhhhc--CeEEEeecC---CcEEeeeechhc
Q 030138 78 MDAVQRRLMFE--DECILVDEN---DRVVGHENKYNC 109 (182)
Q Consensus 78 ~d~~Q~~~M~e--E~vdLVDe~---d~~iG~~~R~~~ 109 (182)
+.+....++.. +.+-+||++ ++++|..++.+.
T Consensus 79 l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l 115 (118)
T cd04617 79 VLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNI 115 (118)
T ss_pred HHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhe
Confidence 33444444432 468899987 699999888554
No 145
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=20.59 E-value=46 Score=27.24 Aligned_cols=15 Identities=7% Similarity=0.122 Sum_probs=11.2
Q ss_pred CCCceecccccCcCC
Q 030138 143 FCILWVKTCLSMDCH 157 (182)
Q Consensus 143 fPglWDnTcgGHpla 157 (182)
|=.-|++.|-|||++
T Consensus 118 wyK~F~i~ckGHPLs 132 (138)
T PF08915_consen 118 WYKEFEISCKGHPLS 132 (138)
T ss_dssp EEEEEEEEE-SSTTS
T ss_pred cceeEEEEecCccHH
Confidence 335689999999997
No 146
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=20.45 E-value=99 Score=21.42 Aligned_cols=21 Identities=14% Similarity=0.403 Sum_probs=17.1
Q ss_pred CeEEEeecCCcEEeeeechhc
Q 030138 89 DECILVDENDRVVGHENKYNC 109 (182)
Q Consensus 89 E~vdLVDe~d~~iG~~~R~~~ 109 (182)
+.+.++|++++++|..++.+.
T Consensus 73 ~~lpVv~~~~~~~Giit~~di 93 (96)
T cd04614 73 EQIPIINGNDKLIGLLRDHDL 93 (96)
T ss_pred CeeeEECCCCcEEEEEEHHHh
Confidence 458889998999999888553
Done!