BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030139
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DY0|A Chain A, Crystal Structure Of Project Jw0458 From Escherichia Coli
pdb|2DY0|B Chain B, Crystal Structure Of Project Jw0458 From Escherichia Coli
Length = 190
Score = 183 bits (464), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 124/171 (72%)
Query: 2 ASADVKAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKN 61
S+ + A ++ + ++I+ I D+PKPGI+F+D+T+LL D KA+ +IDL VERYK+
Sbjct: 4 GSSGMTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAG 63
Query: 62 ISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAV 121
I+ V G EARGF+FG P+AL +G FVP+RKP KLP E ISE Y LEYG D +E+HV A+
Sbjct: 64 ITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAI 123
Query: 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 172
+ G++ L+VDDL+ATGGT+ A ++L+ R+G V + A +I L +L G +RL
Sbjct: 124 KPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 174
>pdb|1ORE|A Chain A, Human Adenine Phosphoribosyltransferase
pdb|1ZN7|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN7|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN8|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN8|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN9|A Chain A, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
pdb|1ZN9|B Chain B, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
Length = 180
Score = 150 bits (378), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 110/176 (62%), Gaps = 3/176 (1%)
Query: 10 DPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKN---ISVVA 66
D + + IR PDFP PG++F+DI+ +L D +FR I L K + I +A
Sbjct: 3 DSELQLVEQRIRSFPDFPTPGVVFRDISPVLKDPASFRAAIGLLARHLKATHGGRIDYIA 62
Query: 67 GIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGER 126
G+++RGF+FGP +A +G V +RK KLPG + YSLEYGK +E+ A++ G+R
Sbjct: 63 GLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEYGKAELEIQKDALEPGQR 122
Query: 127 ALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLVS 182
++VDDL+ATGGT++AA LL R+ V+EC ++EL LKGRE+L P F L+
Sbjct: 123 VVVVDDLLATGGTMNAACELLGRLQAEVLECVSLVELTSLKGREKLAPVPFFSLLQ 178
>pdb|1G2Q|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2Q|B Chain B, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2P|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
Length = 187
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 104/168 (61%), Gaps = 5/168 (2%)
Query: 19 AIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFV----ERYKDKNISVVAGIEARGFI 74
A+ P+FP GI+F+D + + F+ ID F E + + I + G+E+RGF+
Sbjct: 13 ALHQYPNFPSEGILFEDFLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLESRGFL 72
Query: 75 FGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLV 134
FGP +ALA+G FVP+RK KLPGE Y EYG D+ E+ A+ AG +IVDD++
Sbjct: 73 FGPTLALALGVGFVPVRKAGKLPGECFKATYEKEYGSDLFEIQKNAIPAGSNVIIVDDII 132
Query: 135 ATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLVS 182
ATGG+ +AA L+E++ +++E V+EL LKGR +L P+F L++
Sbjct: 133 ATGGSAAAAGELVEQLEANLLEYNFVMELDFLKGRSKLN-APVFTLLN 179
>pdb|1L1Q|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine
pdb|1L1R|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine, Mg2+ And Prpp
Length = 186
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 95/166 (57%), Gaps = 3/166 (1%)
Query: 13 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARG 72
+A + I+ IPDFP GI F+D++ +L A YKD I+ V GIE+RG
Sbjct: 5 VADAHALIKTIPDFPTKGIAFKDLSDILSTPAALDAVRKEVTAHYKDVPITKVVGIESRG 64
Query: 73 FIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDV-MEMHVGAVQAGERALIVD 131
FI G +A ++G FV +RK KLPG+V + +EY K V +E+ + + L+ D
Sbjct: 65 FILGGIVANSLGVGFVALRKAGKLPGDVCKCTFDMEYQKGVTIEVQKRQLGPHDVVLLHD 124
Query: 132 DLVATGGTLSAAIRLLERVGV--HVVECACVIELPELKGRERLGEK 175
D++ATGGTL AAI L E GV + + E+ LKGRE++G+K
Sbjct: 125 DVLATGGTLLAAIELCETAGVKPENIYINVLYEIEALKGREKVGQK 170
>pdb|1MZV|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
(Aprt) From Leishmania Tarentolae
Length = 235
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 86/146 (58%), Gaps = 6/146 (4%)
Query: 33 FQDITTLLLDTKAFRDTIDLFVERYKDKNI--SVVAGIEARGFIFGPPIALAIGAKFVPM 90
F D++++ + + D VERY+ + + + G +ARGF+FGP IA+ +G FV M
Sbjct: 42 FADVSSITESPETLKAIRDFLVERYRTMSPAPTHILGFDARGFLFGPMIAVELGIPFVLM 101
Query: 91 RKPKKLPGEVI-SEEYSLEYGK---DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRL 146
RK K G +I SE Y EY + +VM + G++ R +++DD++ATGGT + ++L
Sbjct: 102 RKADKNAGLLIRSEPYEKEYKEAAPEVMTIRHGSIGKNSRVVLIDDVLATGGTALSGLQL 161
Query: 147 LERVGVHVVECACVIELPELKGRERL 172
+E G VVE ++ +P LK ER+
Sbjct: 162 VEASGAEVVEMVSILTIPFLKAAERI 187
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 85/146 (58%), Gaps = 6/146 (4%)
Query: 33 FQDITTLLLDTKAFRDTIDLFVERYKDKNI--SVVAGIEARGFIFGPPIALAIGAKFVPM 90
F D++++ + + D V+RY+ + + + G +ARGF+FGP IA+ + FV M
Sbjct: 41 FADVSSITESPETLKAIRDFLVQRYRAMSPAPTHILGFDARGFLFGPMIAVELEIPFVLM 100
Query: 91 RKPKKLPGEVI-SEEYSLEYGK---DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRL 146
RK K G +I SE Y EY + +VM + G++ G R +++DD++ATGGT + ++L
Sbjct: 101 RKADKNAGLLIRSEPYEKEYKEAAPEVMTIRYGSIGKGSRVVLIDDVLATGGTALSGLQL 160
Query: 147 LERVGVHVVECACVIELPELKGRERL 172
+E VVE ++ +P LK E++
Sbjct: 161 VEASDAVVVEMVSILSIPFLKAAEKI 186
>pdb|1O57|A Chain A, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|B Chain B, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|C Chain C, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|D Chain D, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
Length = 291
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
Query: 52 LFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLP-GEVISEEYSLEYG 110
LF + ++ I VV + +G A + V +RK K+ G +S Y
Sbjct: 121 LFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYVSGSS 180
Query: 111 KDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 162
+ M + +++ G LI+DD + GGT++ I LL+ +V ++E
Sbjct: 181 NRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVLVE 234
>pdb|1P4A|A Chain A, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|B Chain B, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|C Chain C, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|D Chain D, Crystal Structure Of The Purr Complexed With Cprpp
Length = 285
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
Query: 52 LFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLP-GEVISEEYSLEYG 110
LF + ++ I VV + +G A + V +RK K+ G +S Y
Sbjct: 121 LFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYVSGSS 180
Query: 111 KDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 162
+ M + +++ G LI+DD + GGT++ I LL+ +V ++E
Sbjct: 181 NRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVLVE 234
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 128 LIVDDLVATGGTLSAAIRLLERVGVHVVECACV 160
IVDD+++TGGT++ A++LL+ G + ACV
Sbjct: 209 FIVDDIISTGGTMATAVKLLKEQGAKKIIAACV 241
>pdb|3QW4|B Chain B, Structure Of Leishmania Donovani Ump Synthase
pdb|3QW4|C Chain C, Structure Of Leishmania Donovani Ump Synthase
Length = 453
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 78 PIALAIGAKF-VPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT 136
PIA AI + VP+ P++ ++ + ++E G + G+R +I+DDLV+T
Sbjct: 329 PIASAISNEMNVPLIYPRR-EAKIYGTKAAIE----------GEYKKGDRVVIIDDLVST 377
Query: 137 GGTLSAAIRLLERVGVHVVECACVIE 162
G T AI L G+ VV +++
Sbjct: 378 GETKVEAIEKLRSAGLEVVSIVVLVD 403
>pdb|2EHJ|A Chain A, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|B Chain B, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|C Chain C, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|D Chain D, Structure Of Uracil Phosphoribosyl Transferase
Length = 208
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 127 ALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 165
ALIVD ++ATGG++ A I LL++ G ++ ++ PE
Sbjct: 126 ALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLVAAPE 164
>pdb|1I5E|A Chain A, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
pdb|1I5E|B Chain B, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
Length = 209
Score = 33.5 bits (75), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 128 LIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 165
+IVD ++ATGG+ AAI L++ G ++ C+I PE
Sbjct: 128 IIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPE 165
>pdb|1Y0B|A Chain A, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis.
pdb|1Y0B|B Chain B, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis.
pdb|1Y0B|C Chain C, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis.
pdb|1Y0B|D Chain D, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis
Length = 197
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 10/129 (7%)
Query: 51 DLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLP-------GEVISE 103
D F R+ I+ + IE+ G L +G V RK K L V S
Sbjct: 43 DEFASRFAKDGITKIVTIESSGIAPAVXTGLKLGVPVVFARKHKSLTLTDNLLTASVYSF 102
Query: 104 EYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIEL 163
E V H+ + LI+DD +A G + ++++ G + VIE
Sbjct: 103 TKQTESQIAVSGTHLSD---QDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGIVIEK 159
Query: 164 PELKGRERL 172
GR+ L
Sbjct: 160 SFQPGRDEL 168
>pdb|3MBI|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|C Chain C, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|D Chain D, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
Length = 287
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 17/130 (13%)
Query: 34 QDITTLLLDTKAFRD--TIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMR 91
D TL F D D V YK+ ++ V + G I+ +G K +
Sbjct: 126 HDEKTLSYSKVKFSDLHANDAIVRYYKNVDVDYVVSPDDGGLARVADISAKLGKKHFFIE 185
Query: 92 KPKKLPGEVISEEYSLEYGKDVMEMHVGAVQ-AGERALIVDDLVATGGTLSAAIRLLERV 150
K K++ + EM V V G++ LIVDD+++TGGT++ + LL
Sbjct: 186 K-KRIDDRTV-------------EMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREK 231
Query: 151 GVHVVECACV 160
G + + V
Sbjct: 232 GASKIYVSAV 241
>pdb|3LPN|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LPN|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LRT|A Chain A, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3LRT|B Chain B, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3NAG|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
pdb|3NAG|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
Length = 286
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 51 DLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYG 110
D V YK+ ++ V + G I+ +G K + K K++ +
Sbjct: 143 DAIVRYYKNVDVDYVVSPDDGGLARVADISAKLGKKHFFIEK-KRIDDRTV--------- 192
Query: 111 KDVMEMHVGAVQA-GERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 160
EM V V G++ LIVDD+++TGGT++ + LL G + + V
Sbjct: 193 ----EMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAV 239
>pdb|3DEZ|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
pdb|3DEZ|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
Length = 243
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 119 GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI--ELPE 165
G V G++ +I++DL++TGG++ A+ +R G V+ + ELP+
Sbjct: 144 GRVTKGQKMVIIEDLISTGGSVLDAVAAAQREGADVLGVVAIFTYELPK 192
>pdb|2FXV|A Chain A, Bacillus Subtilis Xanthine Phosphoribosyltransferase In
Complex With Guanosine 5'-monophosphate (gmp)
pdb|2FXV|B Chain B, Bacillus Subtilis Xanthine Phosphoribosyltransferase In
Complex With Guanosine 5'-monophosphate (gmp)
Length = 194
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 10/129 (7%)
Query: 51 DLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLP-------GEVISE 103
D F R+ I+ + IE+ G L +G V RK K L V S
Sbjct: 40 DEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTDNLLTASVYSF 99
Query: 104 EYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIEL 163
E V H+ + LI+DD +A G + ++++ G + VIE
Sbjct: 100 TKQTESQIAVSGTHLSD---QDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGIVIEK 156
Query: 164 PELKGRERL 172
GR+ L
Sbjct: 157 SFQPGRDEL 165
>pdb|3M3H|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor'
pdb|3OSC|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
Length = 234
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 119 GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 172
G + G++ ++V+DL++TGG+ + L G V+ + G+E+L
Sbjct: 132 GKAEKGQKVVVVEDLISTGGSAITCVEALREAGCEVLGIVSIFTYELEAGKEKL 185
>pdb|1V9S|A Chain A, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|B Chain B, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|C Chain C, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|D Chain D, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
Length = 208
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 123 AGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGE 174
A RA ++D +ATGG+ S A+ LL+ G V+ ++ PE G ER+ +
Sbjct: 122 AERRAFLLDPXLATGGSASLALSLLKERGATGVKLXAILAAPE--GLERIAK 171
>pdb|2WNS|A Chain A, Human Orotate Phosphoribosyltransferase (Oprtase) Domain
Of Uridine 5'-Monophosphate Synthase (Umps) In Complex
With Its Substrate Orotidine 5'-Monophosphate (Omp)
pdb|2WNS|B Chain B, Human Orotate Phosphoribosyltransferase (Oprtase) Domain
Of Uridine 5'-Monophosphate Synthase (Umps) In Complex
With Its Substrate Orotidine 5'-Monophosphate (Omp)
Length = 205
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 119 GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 172
G + GE LI++D+V +G ++ + +L++ G+ V + A V+ E G+++L
Sbjct: 106 GTINPGETCLIIEDVVTSGSSVLETVEVLQKEGLKVTD-AIVLLDREQGGKDKL 158
>pdb|1VDM|A Chain A, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|B Chain B, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|C Chain C, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|D Chain D, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|E Chain E, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|F Chain F, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|G Chain G, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|H Chain H, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|I Chain I, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|J Chain J, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|K Chain K, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|L Chain L, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
Length = 153
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 125 ERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 160
+R +IVDD+ TG TL I ++++G ++ AC+
Sbjct: 84 KRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACL 119
>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex With
Tubulin Tail
Length = 98
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 119 GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRE 170
G+++ GER L + D V GGT + +R L E C +EL E G+
Sbjct: 1 GSIKKGERELKIGDRVLVGGTKAGVVRFLGETDFAKGEW-CGVELDEPLGKN 51
>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 172
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 117 HVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRE 170
G+++ GER L + D V GGT + +R L E C +EL E G+
Sbjct: 28 EAGSIKKGERELKIGDRVLVGGTKAGVVRFLGETDFAKGEW-CGVELDEPLGKN 80
>pdb|2VFA|A Chain A, Crystal Structure Of A Chimera Of Plasmodium Falciparum
And Human Hypoxanthine-Guanine Phosphoribosyl
Transferases
pdb|2VFA|B Chain B, Crystal Structure Of A Chimera Of Plasmodium Falciparum
And Human Hypoxanthine-Guanine Phosphoribosyl
Transferases
Length = 229
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 123 AGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 161
G+ LIV+D++ TG T+ + L+ + +V+ AC+
Sbjct: 134 TGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVACLF 172
>pdb|2JBH|A Chain A, Human Phosphoribosyl Transferase Domain Containing 1
pdb|2JBH|B Chain B, Human Phosphoribosyl Transferase Domain Containing 1
Length = 225
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 26/39 (66%)
Query: 123 AGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 161
AG+ LIV+D+V TG T+ A + +E+ ++++ A ++
Sbjct: 133 AGKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASLL 171
>pdb|2AEE|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Pyogenes
pdb|2AEE|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Pyogenes
Length = 211
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 19/124 (15%)
Query: 47 RDTIDL-FVERYKDK--NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISE 103
RD I+ FVE K + V+AG G G IA + F +R K G
Sbjct: 51 RDLIENGFVETIKAHFPEVEVIAGTATAGIPHGAIIADKMTLPFAYIRSKPKDHGA---- 106
Query: 104 EYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI-- 161
G + G V G++ +I++DL++TGG++ A R G V+ +
Sbjct: 107 ------GNQIE----GRVLKGQKMVIIEDLISTGGSVLDAAAAASREGADVLGVVAIFTY 156
Query: 162 ELPE 165
ELP+
Sbjct: 157 ELPK 160
>pdb|1CJB|A Chain A, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|B Chain B, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|C Chain C, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|D Chain D, Malarial Purine Phosphoribosyltransferase
Length = 231
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 124 GERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 161
G+ LIV+D++ TG TL L++ + V AC+
Sbjct: 137 GKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLF 174
>pdb|3OZF|A Chain A, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|B Chain B, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|C Chain C, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|D Chain D, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZG|A Chain A, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|B Chain B, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|C Chain C, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|D Chain D, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
Length = 250
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 124 GERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 161
G+ LIV+D++ TG TL L++ + V AC+
Sbjct: 156 GKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLF 193
>pdb|3A3C|A Chain A, Crystal Structure Of Tim40MIA40 FUSING MBP, C296S AND
C298S Mutant
Length = 451
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 8 AQDPRIAGISSAIR---VIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKD--KNI 62
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD N
Sbjct: 310 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNS 366
Query: 63 SVVAGIEARGFIFGPP 78
S V G RG I G P
Sbjct: 367 SSVPG---RGSIEGRP 379
>pdb|2ZXT|A Chain A, Crystal Structure Of Tim40MIA40, A DISULFIDE RELAY SYSTEM
IN Mitochondria, Solved As Mbp Fusion Protein
Length = 465
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 8 AQDPRIAGISSAIR---VIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKD--KNI 62
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD N
Sbjct: 312 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNS 368
Query: 63 SVVAGIEARGFIFGPP 78
S V G RG I G P
Sbjct: 369 SSVPG---RGSIEGRP 381
>pdb|1VCH|A Chain A, Crystal Structure Of A Phosphoribosyltransferase-Related
Protein From Thermus Thermophilus
pdb|1VCH|B Chain B, Crystal Structure Of A Phosphoribosyltransferase-Related
Protein From Thermus Thermophilus
pdb|1VCH|C Chain C, Crystal Structure Of A Phosphoribosyltransferase-Related
Protein From Thermus Thermophilus
pdb|1VCH|D Chain D, Crystal Structure Of A Phosphoribosyltransferase-Related
Protein From Thermus Thermophilus
pdb|1VCH|E Chain E, Crystal Structure Of A Phosphoribosyltransferase-Related
Protein From Thermus Thermophilus
Length = 175
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 124 GERALIVDDLVATGGTLSAAIRLLERVGVHVV 155
+R ++V D+VA+G T+ A +++ R G HVV
Sbjct: 120 NQRVVLVSDVVASGETMRAMEKMVLRAGGHVV 151
>pdb|1DKR|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKR|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1IBS|A Chain A, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
pdb|1IBS|B Chain B, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
Length = 317
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 112 DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 160
+VM + VG ++ G+ A+++DD++ T GT++ A L G V C
Sbjct: 207 EVMNI-VGNIE-GKTAILIDDIIDTAGTITLAANALVENGAKEVYACCT 253
>pdb|2E55|A Chain A, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|B Chain B, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|C Chain C, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|D Chain D, Structure Of Aq2163 Protein From Aquifex Aeolicus
Length = 208
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 110 GKDVMEMHVGAVQ----AGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 165
++ +E H+ + G+ +I+D ++ATGGTL A+R + + V+ I PE
Sbjct: 103 NEETLESHIYYSRLPELKGKIVVILDPMLATGGTLEVALREILKHSPLKVKSVHAIAAPE 162
Query: 166 LKGRERLGEK 175
G +R+ EK
Sbjct: 163 --GLKRIEEK 170
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 73 FIFGPPIALAIGAKFVPMRKPKKLPGEVISEEY---SLEYGKDVMEMHVGAVQAGE 125
F+ IALA G F+ M +PKK ++ E+ S+ GK + VG ++
Sbjct: 114 FVGMSSIALATGCAFIKMSQPKKRAETLMFSEHAVISMRDGKLTLMFRVGNLRNSH 169
>pdb|3EHT|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
Length = 476
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 8 AQDPRIAGISSAIR---VIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 314 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNA 370
Query: 65 VA 66
A
Sbjct: 371 AA 372
>pdb|3EHS|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (Crfr1)
Length = 476
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 8 AQDPRIAGISSAIR---VIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 314 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNA 370
Query: 65 VA 66
A
Sbjct: 371 AA 372
>pdb|2P1Z|A Chain A, Crystal Structure Of Phosphoribosyltransferase From
Corynebacterium Diphtheriae
pdb|2P1Z|B Chain B, Crystal Structure Of Phosphoribosyltransferase From
Corynebacterium Diphtheriae
Length = 180
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 124 GERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 162
G++ L+V+D TG + A++ L G VV A V++
Sbjct: 114 GKKVLVVEDTTTTGNSPLTAVKALREAGAEVVGVATVVD 152
>pdb|1T0K|A Chain A, Joint X-ray And Nmr Refinement Of Yeast L30e-mrna Complex
Length = 381
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 8 AQDPRIAGISSAIR---VIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKD--KNI 62
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD N
Sbjct: 313 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNS 369
Query: 63 SVVAGIEARGFIFG 76
S V G RG I G
Sbjct: 370 SSVPG---RGSIEG 380
>pdb|1NMU|A Chain A, Mbp-L30
pdb|1NMU|C Chain C, Mbp-L30
Length = 382
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 8 AQDPRIAGISSAIR---VIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKD--KNI 62
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD N
Sbjct: 313 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNS 369
Query: 63 SVVAGIEARGFIFG 76
S V G RG I G
Sbjct: 370 SSVPG---RGSIEG 380
>pdb|3MQ9|A Chain A, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|B Chain B, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|C Chain C, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|D Chain D, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|E Chain E, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|F Chain F, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|G Chain G, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|H Chain H, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
Length = 471
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 8 AQDPRIAGISSAIR---VIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 326 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTRI 382
Query: 65 VA 66
A
Sbjct: 383 TA 384
>pdb|3CSB|A Chain A, Crystal Structure Of Monobody Ysx1MALTOSE BINDING PROTEIN
Fusion Complex
Length = 465
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 8 AQDPRIAGISSAIR---VIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 310 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTRI 366
Query: 65 VAG 67
G
Sbjct: 367 TKG 369
>pdb|3CSG|A Chain A, Crystal Structure Of Monobody Ys1(Mbp-74)MALTOSE BINDING
Protein Fusion Complex
Length = 461
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 8 AQDPRIAGISSAIR---VIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 310 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTRI 366
Query: 65 VAG 67
G
Sbjct: 367 TKG 369
>pdb|2OBG|A Chain A, Crystal Structure Of Monobody Mbp-74MALTOSE BINDING
PROTEIN FUSION Complex
Length = 461
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 8 AQDPRIAGISSAIR---VIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 310 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTRI 366
Query: 65 VAG 67
G
Sbjct: 367 TKG 369
>pdb|3N93|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 3
pdb|3N93|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 3
pdb|3N95|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|C Chain C, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|D Chain D, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N96|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|C Chain C, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|D Chain D, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
Length = 482
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 8 AQDPRIAGISSAIR---VIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 314 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNA 370
Query: 65 VAGIEA 70
A A
Sbjct: 371 AAEFAA 376
>pdb|3L2J|A Chain A, Dimeric Structure Of The Ligand-Free Extracellular Domain
Of Parathyroid Hormone Receptor (Pth1r)
pdb|3L2J|B Chain B, Dimeric Structure Of The Ligand-Free Extracellular Domain
Of Parathyroid Hormone Receptor (Pth1r)
Length = 535
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 8 AQDPRIAGISSAIR---VIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 310 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNA 366
Query: 65 VA 66
A
Sbjct: 367 AA 368
>pdb|1HMP|A Chain A, The Crystal Structure Of Human Hypoxanthine-Guanine
Phosphoribosyltransferase With Bound Gmp
pdb|1HMP|B Chain B, The Crystal Structure Of Human Hypoxanthine-Guanine
Phosphoribosyltransferase With Bound Gmp
pdb|1BZY|A Chain A, Human Hgprtase With Transition State Inhibitor
pdb|1BZY|B Chain B, Human Hgprtase With Transition State Inhibitor
pdb|1BZY|C Chain C, Human Hgprtase With Transition State Inhibitor
pdb|1BZY|D Chain D, Human Hgprtase With Transition State Inhibitor
pdb|1Z7G|A Chain A, Free Human Hgprt
pdb|1Z7G|B Chain B, Free Human Hgprt
pdb|1Z7G|C Chain C, Free Human Hgprt
pdb|1Z7G|D Chain D, Free Human Hgprt
pdb|3GEP|A Chain A, Human Hypoxanthine Guanine Phosphoribosyltranserfase In
Complex With (S)-9-(3-Hydroxy-2-Phosphonylmethoxypropyl)
Guanine
pdb|3GEP|B Chain B, Human Hypoxanthine Guanine Phosphoribosyltranserfase In
Complex With (S)-9-(3-Hydroxy-2-Phosphonylmethoxypropyl)
Guanine
pdb|3GGC|A Chain A, Human Hypoxanthine-guanine Phosphoribosyltransferase In
Complex With 9-(2-phosphonoethoxyethyl)hypoxanthine
pdb|3GGC|B Chain B, Human Hypoxanthine-guanine Phosphoribosyltransferase In
Complex With 9-(2-phosphonoethoxyethyl)hypoxanthine
pdb|3GGJ|A Chain A, Human Hypoxanthine-guanine Phosphoribosyltransferase In
Complex With 9-(2-phosphonoethoxyethyl)guanine
pdb|3GGJ|B Chain B, Human Hypoxanthine-guanine Phosphoribosyltransferase In
Complex With 9-(2-phosphonoethoxyethyl)guanine
Length = 217
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 123 AGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRER-LGEKPLFV 179
G+ LIV+D++ TG T+ + L+ + +V+ A ++ +K R +G KP FV
Sbjct: 125 TGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLL----VKRTPRSVGYKPDFV 178
>pdb|3C4M|A Chain A, Structure Of Human Parathyroid Hormone In Complex With The
Extracellular Domain Of Its G-Protein-Coupled Receptor
(Pth1r)
pdb|3C4M|B Chain B, Structure Of Human Parathyroid Hormone In Complex With The
Extracellular Domain Of Its G-Protein-Coupled Receptor
(Pth1r)
pdb|3H3G|A Chain A, Crystal Structure Of The Extracellular Domain Of The Human
Parathyroid Hormone Receptor (Pth1r) In Complex With
Parathyroid Hormone-Related Protein (Pthrp)
Length = 539
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 8 AQDPRIAGISSAIR---VIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 314 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNA 370
Query: 65 VA 66
A
Sbjct: 371 AA 372
>pdb|3N94|A Chain A, Crystal Structure Of Human Pituitary Adenylate Cyclase 1
Receptor- Short N-Terminal Extracellular Domain
Length = 475
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 8 AQDPRIAGISSAIR---VIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 314 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNA 370
Query: 65 VA 66
A
Sbjct: 371 AA 372
>pdb|1D6N|A Chain A, Ternary Complex Structure Of Human Hgprtase, Prpp, Mg2+,
And The Inhibitor Hpp Reveals The Involvement Of The
Flexible Loop In Substrate Binding
pdb|1D6N|B Chain B, Ternary Complex Structure Of Human Hgprtase, Prpp, Mg2+,
And The Inhibitor Hpp Reveals The Involvement Of The
Flexible Loop In Substrate Binding
Length = 214
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 123 AGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRER-LGEKPLFV 179
G+ LIV+D++ TG T+ + L+ + +V+ A ++ +K R +G KP FV
Sbjct: 122 TGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLL----VKRTPRSVGYKPDFV 175
>pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|A Chain A, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|Z Chain Z, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
Length = 509
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 8 AQDPRIAGISSAIR---VIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 313 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNA 369
Query: 65 VA 66
A
Sbjct: 370 AA 371
>pdb|1QK5|A Chain A, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase With Xmp, Pyrophosphate And
Two Mg2+ Ions
pdb|1QK5|B Chain B, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase With Xmp, Pyrophosphate And
Two Mg2+ Ions
Length = 233
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 125 ERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 162
+ LIV+D+VATG TL+ L+ VG + A ++E
Sbjct: 143 KHVLIVEDIVATGFTLTEFGERLKAVGPKSMRIATLVE 180
>pdb|3DAH|A Chain A, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|B Chain B, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|C Chain C, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
Length = 319
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 118 VGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVV 155
+G V+ G +I+DD+V T GTL A ++L+ G V
Sbjct: 211 IGEVE-GRTCVIMDDMVDTAGTLCKAAQVLKERGAKQV 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,131,624
Number of Sequences: 62578
Number of extensions: 201441
Number of successful extensions: 757
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 712
Number of HSP's gapped (non-prelim): 67
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)