Query 030139
Match_columns 182
No_of_seqs 122 out of 1348
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 09:08:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02293 adenine phosphoribosy 100.0 3.1E-35 6.6E-40 228.4 20.8 178 5-182 6-183 (187)
2 KOG1712 Adenine phosphoribosyl 100.0 6.6E-36 1.4E-40 221.2 16.0 173 10-182 5-180 (183)
3 PRK02304 adenine phosphoribosy 100.0 3.3E-32 7.2E-37 209.7 19.4 169 13-181 3-171 (175)
4 TIGR01090 apt adenine phosphor 100.0 5.3E-31 1.1E-35 202.0 18.3 166 16-181 1-167 (169)
5 COG0503 Apt Adenine/guanine ph 100.0 2.1E-29 4.6E-34 194.6 18.7 171 11-181 3-175 (179)
6 PRK12560 adenine phosphoribosy 100.0 2.6E-27 5.6E-32 184.2 18.9 165 14-182 4-175 (187)
7 TIGR01744 XPRTase xanthine pho 100.0 1.7E-27 3.6E-32 185.6 17.8 168 10-182 2-177 (191)
8 PRK09219 xanthine phosphoribos 100.0 1.9E-27 4.2E-32 185.0 17.7 166 10-181 2-176 (189)
9 TIGR01743 purR_Bsub pur operon 100.0 2.6E-27 5.6E-32 192.3 18.2 163 10-181 83-248 (268)
10 PRK09213 pur operon repressor; 100.0 5.7E-27 1.2E-31 190.7 17.9 163 10-181 85-250 (271)
11 PRK13810 orotate phosphoribosy 99.9 2.6E-26 5.7E-31 178.3 15.9 136 32-182 44-181 (187)
12 PRK08558 adenine phosphoribosy 99.9 6.6E-26 1.4E-30 182.2 16.9 162 13-182 69-236 (238)
13 PRK13809 orotate phosphoribosy 99.9 1E-24 2.2E-29 171.7 17.0 144 24-182 32-177 (206)
14 PRK07322 adenine phosphoribosy 99.9 4.5E-24 9.7E-29 164.9 18.0 162 16-178 8-177 (178)
15 PRK13812 orotate phosphoribosy 99.9 3.7E-24 7.9E-29 165.0 15.8 143 21-182 22-166 (176)
16 TIGR00336 pyrE orotate phospho 99.9 4.4E-24 9.6E-29 164.2 13.9 147 20-182 14-169 (173)
17 PRK13811 orotate phosphoribosy 99.9 8.5E-24 1.8E-28 162.2 14.6 132 32-182 30-163 (170)
18 TIGR01367 pyrE_Therm orotate p 99.9 3.8E-23 8.3E-28 160.8 16.4 142 20-182 17-161 (187)
19 PRK02277 orotate phosphoribosy 99.9 5.9E-23 1.3E-27 161.3 17.5 145 27-182 49-195 (200)
20 PRK05500 bifunctional orotidin 99.9 6.3E-23 1.4E-27 178.5 15.5 135 32-181 315-451 (477)
21 PRK00455 pyrE orotate phosphor 99.9 1.5E-22 3.2E-27 159.3 15.5 134 32-181 33-171 (202)
22 PRK06031 phosphoribosyltransfe 99.9 7.1E-22 1.5E-26 158.1 14.4 153 15-174 41-203 (233)
23 COG0461 PyrE Orotate phosphori 99.9 9.6E-22 2.1E-26 153.2 13.9 135 32-181 31-170 (201)
24 COG0856 Orotate phosphoribosyl 99.9 7.9E-21 1.7E-25 142.9 14.0 139 31-182 53-196 (203)
25 PF00156 Pribosyltran: Phospho 99.8 1.9E-20 4.1E-25 135.7 11.8 122 38-161 2-125 (125)
26 PRK09162 hypoxanthine-guanine 99.7 1.2E-16 2.6E-21 123.7 13.1 118 39-164 15-137 (181)
27 PRK07199 phosphoribosylpyropho 99.7 7.9E-17 1.7E-21 133.8 12.3 108 61-180 160-267 (301)
28 TIGR01203 HGPRTase hypoxanthin 99.7 3.2E-16 6.9E-21 119.8 13.6 119 40-165 2-125 (166)
29 PLN02238 hypoxanthine phosphor 99.7 2.9E-16 6.2E-21 122.4 13.5 120 37-165 8-138 (189)
30 PRK00934 ribose-phosphate pyro 99.7 2.6E-16 5.7E-21 129.8 12.1 117 50-180 142-260 (285)
31 PRK02269 ribose-phosphate pyro 99.7 5.6E-16 1.2E-20 129.7 12.9 109 61-180 165-273 (320)
32 PRK09177 xanthine-guanine phos 99.7 9.2E-16 2E-20 116.1 12.8 111 39-164 8-119 (156)
33 PRK08525 amidophosphoribosyltr 99.7 4.5E-16 9.8E-21 135.4 12.0 135 44-180 259-396 (445)
34 PRK15423 hypoxanthine phosphor 99.7 1.3E-15 2.8E-20 117.6 12.7 119 38-165 6-133 (178)
35 COG1040 ComFC Predicted amidop 99.7 2.4E-16 5.2E-21 125.9 7.8 120 42-162 90-222 (225)
36 PRK04923 ribose-phosphate pyro 99.6 2.3E-15 5E-20 125.8 12.8 107 61-180 166-273 (319)
37 TIGR00201 comF comF family pro 99.6 7.7E-16 1.7E-20 120.0 9.0 118 42-161 57-189 (190)
38 COG0462 PrsA Phosphoribosylpyr 99.6 1.8E-15 3.9E-20 124.7 11.1 105 63-179 165-269 (314)
39 PRK01259 ribose-phosphate pyro 99.6 3E-15 6.5E-20 124.8 12.4 105 60-177 157-261 (309)
40 PRK02458 ribose-phosphate pyro 99.6 3.5E-15 7.6E-20 124.9 11.8 107 61-181 169-275 (323)
41 PRK05205 bifunctional pyrimidi 99.6 6.6E-15 1.4E-19 113.5 12.0 120 38-164 4-136 (176)
42 PTZ00271 hypoxanthine-guanine 99.6 1.3E-14 2.7E-19 114.7 13.4 120 36-165 23-159 (211)
43 PRK00553 ribose-phosphate pyro 99.6 1.1E-14 2.3E-19 122.4 13.4 101 61-174 168-268 (332)
44 PRK03092 ribose-phosphate pyro 99.6 5.8E-15 1.2E-19 122.8 11.5 109 61-180 148-257 (304)
45 PRK06827 phosphoribosylpyropho 99.6 2.1E-14 4.5E-19 122.4 12.7 105 61-174 207-313 (382)
46 COG0634 Hpt Hypoxanthine-guani 99.6 5.4E-14 1.2E-18 106.7 13.4 122 36-167 7-136 (178)
47 TIGR01251 ribP_PPkin ribose-ph 99.6 1.8E-14 3.9E-19 120.1 11.8 106 61-178 159-264 (308)
48 PRK05793 amidophosphoribosyltr 99.6 1.7E-14 3.7E-19 126.3 11.5 127 45-173 273-402 (469)
49 PTZ00149 hypoxanthine phosphor 99.6 6.4E-14 1.4E-18 112.6 12.5 130 36-165 53-191 (241)
50 PRK07349 amidophosphoribosyltr 99.6 2.3E-14 5.1E-19 125.9 10.7 116 44-160 296-413 (500)
51 PRK11595 DNA utilization prote 99.6 4.5E-14 9.7E-19 113.0 11.0 119 42-162 86-225 (227)
52 PLN02369 ribose-phosphate pyro 99.5 8.5E-14 1.8E-18 115.7 12.6 104 63-179 153-257 (302)
53 COG2236 Predicted phosphoribos 99.5 2.2E-14 4.8E-19 111.4 8.4 115 39-163 5-126 (192)
54 PRK02812 ribose-phosphate pyro 99.5 6.7E-14 1.5E-18 117.5 11.8 107 61-180 179-286 (330)
55 PRK09123 amidophosphoribosyltr 99.5 7.1E-14 1.5E-18 122.6 11.6 112 44-159 279-395 (479)
56 PLN02297 ribose-phosphate pyro 99.5 7E-14 1.5E-18 116.9 10.8 109 50-174 169-280 (326)
57 PTZ00145 phosphoribosylpyropho 99.5 9.1E-14 2E-18 119.7 11.6 108 61-181 279-392 (439)
58 PLN02440 amidophosphoribosyltr 99.5 8.5E-14 1.8E-18 122.2 11.5 115 44-161 259-377 (479)
59 PF14572 Pribosyl_synth: Phosp 99.5 4.4E-14 9.5E-19 108.7 7.9 118 61-180 3-139 (184)
60 PRK06781 amidophosphoribosyltr 99.5 6.3E-14 1.4E-18 122.6 8.9 117 44-162 267-386 (471)
61 TIGR01134 purF amidophosphorib 99.5 7.1E-14 1.5E-18 121.7 8.8 114 44-160 257-374 (442)
62 PRK07272 amidophosphoribosyltr 99.5 7.3E-14 1.6E-18 122.4 8.6 114 44-160 269-386 (484)
63 PRK09246 amidophosphoribosyltr 99.5 9.4E-14 2E-18 122.6 9.0 114 48-162 276-396 (501)
64 PRK07847 amidophosphoribosyltr 99.5 2.3E-13 5E-18 119.9 11.4 116 44-161 286-404 (510)
65 PRK06388 amidophosphoribosyltr 99.5 2.4E-13 5.1E-18 119.0 11.3 115 44-161 275-393 (474)
66 PRK08341 amidophosphoribosyltr 99.5 2.7E-13 5.8E-18 117.8 10.9 115 44-161 255-371 (442)
67 PRK07631 amidophosphoribosyltr 99.5 1.5E-13 3.3E-18 120.2 8.0 116 44-162 267-386 (475)
68 COG0034 PurF Glutamine phospho 99.4 1.1E-12 2.4E-17 112.2 8.5 116 44-161 267-385 (470)
69 KOG1448 Ribose-phosphate pyrop 99.3 6.4E-12 1.4E-16 102.2 9.4 125 34-175 140-265 (316)
70 PRK00129 upp uracil phosphorib 99.2 2.3E-10 4.9E-15 90.6 10.2 100 63-174 72-172 (209)
71 COG2065 PyrR Pyrimidine operon 99.1 1.3E-09 2.9E-14 81.8 11.6 115 40-164 6-137 (179)
72 TIGR01091 upp uracil phosphori 99.1 7.6E-10 1.6E-14 87.5 9.8 98 63-173 70-169 (207)
73 COG1926 Predicted phosphoribos 99.1 2.7E-09 5.9E-14 83.2 12.0 113 49-161 10-161 (220)
74 KOG3367 Hypoxanthine-guanine p 99.0 3.6E-09 7.8E-14 80.1 10.1 124 32-165 28-166 (216)
75 KOG0572 Glutamine phosphoribos 99.0 1E-09 2.3E-14 92.1 7.0 114 45-160 276-392 (474)
76 PF15609 PRTase_2: Phosphoribo 98.8 2.2E-07 4.9E-12 71.9 12.5 136 28-165 15-163 (191)
77 PLN02541 uracil phosphoribosyl 98.1 1.4E-05 3E-10 64.7 8.3 50 122-173 155-206 (244)
78 KOG1503 Phosphoribosylpyrophos 97.9 0.00018 3.8E-09 57.8 10.9 139 35-179 145-302 (354)
79 COG0035 Upp Uracil phosphoribo 97.8 6.9E-05 1.5E-09 58.9 7.3 98 64-174 73-173 (210)
80 PF14681 UPRTase: Uracil phosp 97.8 0.00019 4.1E-09 56.7 9.0 98 63-173 69-170 (207)
81 PF15610 PRTase_3: PRTase ComF 96.1 0.086 1.9E-06 43.2 10.3 117 38-155 27-169 (274)
82 PF13793 Pribosyltran_N: N-ter 93.6 1.5 3.3E-05 31.4 9.8 75 70-158 7-85 (116)
83 KOG1017 Predicted uracil phosp 93.6 0.24 5.1E-06 39.0 5.8 61 119-180 184-246 (267)
84 KOG1377 Uridine 5'- monophosph 91.9 0.56 1.2E-05 38.0 6.1 123 33-164 65-192 (261)
85 PRK02812 ribose-phosphate pyro 90.0 4.9 0.00011 34.1 10.4 81 63-157 21-105 (330)
86 PTZ00145 phosphoribosylpyropho 89.9 4.3 9.3E-05 35.8 10.2 81 63-157 119-203 (439)
87 PRK00553 ribose-phosphate pyro 87.9 7.7 0.00017 32.9 10.2 80 64-157 10-93 (332)
88 PLN02369 ribose-phosphate pyro 87.6 4.5 9.8E-05 33.8 8.5 70 74-157 2-75 (302)
89 PRK00934 ribose-phosphate pyro 87.6 6.4 0.00014 32.5 9.4 74 70-157 6-82 (285)
90 PRK02269 ribose-phosphate pyro 87.4 8.8 0.00019 32.3 10.2 79 64-157 7-89 (320)
91 PRK07199 phosphoribosylpyropho 86.9 9.8 0.00021 31.8 10.2 74 70-157 9-85 (301)
92 PRK01259 ribose-phosphate pyro 86.0 10 0.00022 31.8 9.8 74 70-157 7-84 (309)
93 PRK03092 ribose-phosphate pyro 85.7 7.2 0.00016 32.6 8.8 69 75-157 1-73 (304)
94 PRK04923 ribose-phosphate pyro 85.7 12 0.00026 31.6 10.1 79 64-157 8-90 (319)
95 TIGR01251 ribP_PPkin ribose-ph 84.9 12 0.00025 31.4 9.7 74 70-157 7-85 (308)
96 PRK02458 ribose-phosphate pyro 83.8 19 0.00041 30.4 10.5 80 64-157 10-93 (323)
97 COG0462 PrsA Phosphoribosylpyr 82.1 8.6 0.00019 32.4 7.7 75 70-158 11-89 (314)
98 PLN02297 ribose-phosphate pyro 77.4 41 0.00089 28.5 10.5 81 64-157 17-101 (326)
99 PRK06827 phosphoribosylpyropho 72.5 58 0.0013 28.3 10.3 38 119-157 72-127 (382)
100 PF04392 ABC_sub_bind: ABC tra 70.2 46 0.001 27.1 9.0 140 8-156 12-165 (294)
101 PRK12342 hypothetical protein; 69.8 20 0.00043 29.3 6.6 42 48-89 96-141 (254)
102 PRK03359 putative electron tra 65.5 33 0.00071 28.0 7.0 42 48-89 99-144 (256)
103 PF07931 CPT: Chloramphenicol 54.0 19 0.00042 27.6 3.6 35 126-160 84-119 (174)
104 smart00450 RHOD Rhodanese Homo 51.3 38 0.00082 21.8 4.4 33 121-156 53-85 (100)
105 cd00158 RHOD Rhodanese Homolog 51.2 43 0.00092 21.2 4.6 33 121-156 47-79 (89)
106 PF11382 DUF3186: Protein of u 49.0 57 0.0012 27.3 6.0 46 120-165 79-124 (308)
107 cd01529 4RHOD_Repeats Member o 47.4 41 0.00089 22.3 4.1 32 122-156 54-85 (96)
108 cd01715 ETF_alpha The electron 44.8 57 0.0012 24.3 5.0 42 47-88 69-111 (168)
109 cd01444 GlpE_ST GlpE sulfurtra 44.6 46 0.001 21.7 4.1 33 121-156 53-85 (96)
110 COG2086 FixA Electron transfer 42.6 1.4E+02 0.0029 24.6 7.1 42 48-89 98-143 (260)
111 PF12646 DUF3783: Domain of un 41.1 68 0.0015 19.7 4.0 35 126-163 2-36 (58)
112 PRK01021 lpxB lipid-A-disaccha 40.9 62 0.0013 29.9 5.3 45 45-89 294-341 (608)
113 cd01714 ETF_beta The electron 39.1 65 0.0014 25.0 4.6 41 48-88 95-139 (202)
114 TIGR00215 lpxB lipid-A-disacch 37.3 91 0.002 26.7 5.6 36 55-90 83-119 (385)
115 TIGR00150 HI0065_YjeE ATPase, 36.6 1.2E+02 0.0026 22.1 5.4 46 41-86 3-49 (133)
116 cd01985 ETF The electron trans 35.4 78 0.0017 23.8 4.5 42 48-89 78-120 (181)
117 PF02875 Mur_ligase_C: Mur lig 35.2 74 0.0016 20.9 3.9 26 125-150 12-37 (91)
118 COG0784 CheY FOG: CheY-like re 34.1 1.1E+02 0.0025 20.6 4.9 26 123-151 4-29 (130)
119 KOG0734 AAA+-type ATPase conta 33.2 40 0.00088 31.0 2.8 28 63-90 340-368 (752)
120 COG2984 ABC-type uncharacteriz 32.9 3.1E+02 0.0067 23.3 8.4 50 34-90 65-115 (322)
121 PRK13584 hisG ATP phosphoribos 32.5 21 0.00045 28.2 0.8 12 131-142 149-160 (204)
122 PF01012 ETF: Electron transfe 32.2 40 0.00087 24.9 2.3 42 48-89 77-119 (164)
123 TIGR01426 MGT glycosyltransfer 31.6 1.6E+02 0.0035 24.8 6.3 33 55-89 86-118 (392)
124 PF01634 HisG: ATP phosphoribo 31.4 23 0.00051 26.9 0.9 10 132-141 112-121 (163)
125 cd01518 RHOD_YceA Member of th 31.2 1.2E+02 0.0026 20.1 4.4 31 122-155 59-89 (101)
126 PRK01686 hisG ATP phosphoribos 31.0 24 0.00051 28.1 0.9 11 132-142 160-170 (215)
127 PF07728 AAA_5: AAA domain (dy 30.4 1.3E+02 0.0028 21.2 4.7 86 64-151 3-92 (139)
128 COG0371 GldA Glycerol dehydrog 29.3 1.2E+02 0.0027 26.1 5.0 31 60-90 83-114 (360)
129 KOG0731 AAA+-type ATPase conta 29.3 64 0.0014 30.7 3.5 63 28-90 305-375 (774)
130 PRK04195 replication factor C 29.2 4E+02 0.0088 23.5 8.9 110 36-152 13-131 (482)
131 TIGR01809 Shik-DH-AROM shikima 29.1 1.2E+02 0.0026 24.8 4.9 33 122-158 123-155 (282)
132 cd07039 TPP_PYR_POX Pyrimidine 28.9 1.2E+02 0.0025 22.7 4.4 41 51-91 4-45 (164)
133 PRK13583 hisG ATP phosphoribos 28.7 26 0.00056 28.2 0.8 11 132-142 177-187 (228)
134 PF10662 PduV-EutP: Ethanolami 27.7 35 0.00075 25.4 1.3 39 132-173 100-138 (143)
135 PF04189 Gcd10p: Gcd10p family 27.4 1.1E+02 0.0024 25.6 4.4 37 121-163 199-235 (299)
136 cd01528 RHOD_2 Member of the R 26.9 1.5E+02 0.0032 19.6 4.3 31 123-156 57-87 (101)
137 COG0040 HisG ATP phosphoribosy 26.9 29 0.00063 29.0 0.8 19 131-156 160-178 (290)
138 PRK13947 shikimate kinase; Pro 26.8 72 0.0016 23.4 2.9 26 64-89 5-31 (171)
139 PF01488 Shikimate_DH: Shikima 26.7 96 0.0021 22.2 3.5 37 121-164 9-45 (135)
140 PF02684 LpxB: Lipid-A-disacch 26.4 1.5E+02 0.0032 25.7 5.0 39 47-86 68-108 (373)
141 TIGR00070 hisG ATP phosphoribo 26.2 32 0.0007 26.6 0.9 13 130-142 152-164 (182)
142 PF02776 TPP_enzyme_N: Thiamin 25.9 98 0.0021 23.1 3.5 42 50-91 4-46 (172)
143 PF00595 PDZ: PDZ domain (Also 25.9 1.4E+02 0.0031 18.9 3.9 32 121-152 43-74 (81)
144 COG3535 Uncharacterized conser 25.8 4.3E+02 0.0093 22.7 13.0 106 42-154 77-186 (357)
145 PF06068 TIP49: TIP49 C-termin 25.6 2.2E+02 0.0048 24.9 5.9 51 40-90 26-83 (398)
146 cd01523 RHOD_Lact_B Member of 25.3 1.7E+02 0.0038 19.2 4.4 29 122-153 59-87 (100)
147 PF14502 HTH_41: Helix-turn-he 25.2 1.1E+02 0.0024 18.3 2.9 21 135-155 18-38 (48)
148 PF03681 UPF0150: Uncharacteri 25.2 25 0.00054 20.5 0.1 19 132-150 23-41 (48)
149 PRK14089 ipid-A-disaccharide s 24.8 1.9E+02 0.0041 24.6 5.4 29 60-89 75-107 (347)
150 TIGR03492 conserved hypothetic 23.9 1.5E+02 0.0033 25.5 4.8 26 61-89 93-118 (396)
151 PF13189 Cytidylate_kin2: Cyti 23.8 62 0.0013 24.5 2.1 20 70-89 10-29 (179)
152 KOG0081 GTPase Rab27, small G 23.7 3.4E+02 0.0074 21.0 5.9 44 45-89 109-160 (219)
153 cd01524 RHOD_Pyr_redox Member 23.2 2.1E+02 0.0045 18.5 4.4 28 122-152 49-76 (90)
154 PLN02199 shikimate kinase 22.8 2.5E+02 0.0053 23.7 5.5 49 41-90 84-133 (303)
155 cd03786 GT1_UDP-GlcNAc_2-Epime 22.8 2.8E+02 0.0061 22.7 6.1 43 48-90 75-118 (363)
156 PRK10646 ADP-binding protein; 22.6 2.8E+02 0.006 20.8 5.3 48 39-86 7-55 (153)
157 PRK04940 hypothetical protein; 22.5 3.7E+02 0.008 20.7 6.5 29 61-90 60-88 (180)
158 PF05728 UPF0227: Uncharacteri 22.5 2.9E+02 0.0062 21.2 5.6 48 41-90 40-87 (187)
159 COG1224 TIP49 DNA helicase TIP 22.2 2.2E+02 0.0049 24.9 5.2 51 40-90 41-98 (450)
160 TIGR01133 murG undecaprenyldip 22.1 2.7E+02 0.0058 22.6 5.8 38 52-89 81-118 (348)
161 cd01534 4RHOD_Repeat_3 Member 21.8 2.3E+02 0.0049 18.5 4.4 28 123-153 55-82 (95)
162 PF10865 DUF2703: Domain of un 21.8 1.1E+02 0.0024 22.0 2.9 24 133-156 18-45 (120)
163 cd01519 RHOD_HSP67B2 Member of 21.7 1.8E+02 0.004 19.1 4.0 33 122-157 64-96 (106)
164 KOG1503 Phosphoribosylpyrophos 21.6 2.9E+02 0.0062 22.8 5.5 55 64-132 9-63 (354)
165 PRK03482 phosphoglycerate muta 21.5 2.3E+02 0.0049 21.8 4.9 42 48-89 34-76 (215)
166 COG0028 IlvB Thiamine pyrophos 21.4 1.5E+02 0.0032 27.0 4.3 41 50-91 5-46 (550)
167 TIGR00236 wecB UDP-N-acetylglu 21.3 3.2E+02 0.0069 22.7 6.1 43 48-90 73-116 (365)
168 cd06367 PBP1_iGluR_NMDA N-term 21.2 1.6E+02 0.0034 24.5 4.2 37 53-89 55-95 (362)
169 KOG2977 Glycosyltransferase [G 21.1 2.1E+02 0.0045 24.2 4.7 42 125-167 105-147 (323)
170 cd01532 4RHOD_Repeat_1 Member 21.0 1.7E+02 0.0036 19.1 3.6 31 123-156 49-81 (92)
171 PF03129 HGTP_anticodon: Antic 20.8 2.5E+02 0.0054 18.2 5.5 48 44-91 12-59 (94)
172 PRK10618 phosphotransfer inter 20.7 6.8E+02 0.015 24.3 8.8 32 122-156 687-718 (894)
173 PRK05329 anaerobic glycerol-3- 20.7 2.7E+02 0.0058 24.4 5.6 57 32-90 189-249 (422)
174 cd01525 RHOD_Kc Member of the 20.6 2E+02 0.0044 18.9 4.0 31 123-156 64-94 (105)
175 COG3896 Chloramphenicol 3-O-ph 20.1 1.4E+02 0.0029 23.2 3.2 39 124-162 113-151 (205)
No 1
>PLN02293 adenine phosphoribosyltransferase
Probab=100.00 E-value=3.1e-35 Score=228.43 Aligned_cols=178 Identities=81% Similarity=1.296 Sum_probs=163.8
Q ss_pred cccccchHHHHHhhccccCCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhC
Q 030139 5 DVKAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIG 84 (182)
Q Consensus 5 ~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~ 84 (182)
-.++-|++.++|.+.+||.|+||.+|+.|+|++.++.+|+.++.++..|++.+.+.++|+|+|++.+|+++|..+|..+|
T Consensus 6 ~~~~~~~~~~~l~~~i~~~~~~p~~gi~f~D~~~l~~~p~~~~~~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~lA~~Lg 85 (187)
T PLN02293 6 NGDQGDPRLQGISSAIRVVPDFPKPGIMFQDITTLLLDPKAFKDTIDLFVERYRDMGISVVAGIEARGFIFGPPIALAIG 85 (187)
T ss_pred cccCCChhHHHHHHhCccCCCCCcCCcEEEECHHHhhCHHHHHHHHHHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHC
Confidence 45778999999999999999999999999999999999999999999999999877899999999999999999999999
Q ss_pred CCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecC
Q 030139 85 AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELP 164 (182)
Q Consensus 85 vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~ 164 (182)
+|++++||.++.+++.....|..+++++.+++..+...+|++|+||||+++||+|+.+++++|+++|+++++++++++.+
T Consensus 86 ~p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v~~~~~~~~~ 165 (187)
T PLN02293 86 AKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGERALVIDDLIATGGTLCAAINLLERAGAEVVECACVIELP 165 (187)
T ss_pred CCEEEEEecCCCCCceEEEEEeccCCceEEEEEcCccCCCCEEEEEeccccchHHHHHHHHHHHHCCCEEEEEEEEEEcC
Confidence 99999999888777776666766677766777666667899999999999999999999999999999999999999999
Q ss_pred CcccccccCCCCcccccC
Q 030139 165 ELKGRERLGEKPLFVLVS 182 (182)
Q Consensus 165 ~~~~~~~l~~~~~~~l~~ 182 (182)
+.++++++.++|+++|++
T Consensus 166 ~~~g~~~l~~~~~~sl~~ 183 (187)
T PLN02293 166 ELKGREKLNGKPLFVLVE 183 (187)
T ss_pred CccHHHHhcCCceEEEEe
Confidence 889999999999999873
No 2
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.6e-36 Score=221.24 Aligned_cols=173 Identities=69% Similarity=1.172 Sum_probs=167.0
Q ss_pred chHHHHHhhccccCCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcC---CCccEEEeeCCCChhhHHHHHHHhCCC
Q 030139 10 DPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAK 86 (182)
Q Consensus 10 ~~~~~~l~~~~r~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~la~~~~~---~~~d~Iv~v~~~G~~~a~~la~~l~vp 86 (182)
+++++.+++.||..|+||++|++|.|+..++.||..++.++..+.+++++ .++|+|+|+++|||.++..+|.++|++
T Consensus 5 d~~~~~ik~~ir~~pdFPk~GI~F~Di~pll~dP~af~~lidlf~~h~~~~~~~~Id~iaGlEaRGFLFGP~iAlalG~~ 84 (183)
T KOG1712|consen 5 DPRLKYIKTAIRVVPDFPKKGIMFQDITPLLLDPKAFKKLIDLFVDHYRETFEMKIDVIAGLEARGFLFGPSIALALGAG 84 (183)
T ss_pred cHHHHHHHHhheeCCCCCCCceehhhhhhhhcCHHHHHHHHHHHHHHHHHHhcCcceEEEeeeecceecCcHHHHHhCCC
Confidence 67899999999999999999999999999999999999999999998887 569999999999999999999999999
Q ss_pred eEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCc
Q 030139 87 FVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPEL 166 (182)
Q Consensus 87 ~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~ 166 (182)
++.+||..|.|++..+.+|..+++...+++..++...|+||+||||++.||+|+.++.+++.+.|++++.++|+++..+-
T Consensus 85 fVPiRK~gKLPG~~i~~~Y~lEYg~d~~Emq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vieL~~L 164 (183)
T KOG1712|consen 85 FVPIRKPGKLPGEVISESYELEYGEDRFEMQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAEVVECACVIELPEL 164 (183)
T ss_pred eeecccCCCCCCceeEEEEeeecCccceeeeccccCCCCeEEEEechhhcCccHHHHHHHHHHhccEEEEEEEEEEcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcccccC
Q 030139 167 KGRERLGEKPLFVLVS 182 (182)
Q Consensus 167 ~~~~~l~~~~~~~l~~ 182 (182)
+|+++|++.|+++|++
T Consensus 165 kGr~kL~~~pl~~Ll~ 180 (183)
T KOG1712|consen 165 KGREKLKGKPLFSLLE 180 (183)
T ss_pred CCccccCCCccEEEee
Confidence 9999999999999874
No 3
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.3e-32 Score=209.69 Aligned_cols=169 Identities=61% Similarity=1.021 Sum_probs=149.2
Q ss_pred HHHHhhccccCCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEeeec
Q 030139 13 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRK 92 (182)
Q Consensus 13 ~~~l~~~~r~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk 92 (182)
+++|.+..|.+|.||.|++.|.|+++++.+|+.++.+++.+++.+.+.++|+|+|++.+|+++|..+|..+++|+..+||
T Consensus 3 ~~~l~~~~~~~~~~~~~~~~~~d~~~l~~~p~~~~~~~~~la~~~~~~~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~rk 82 (175)
T PRK02304 3 LEDLKSSIRTIPDFPKPGILFRDITPLLADPEAFREVIDALVERYKDADIDKIVGIEARGFIFGAALAYKLGIGFVPVRK 82 (175)
T ss_pred HHHHHHhhccCCCCCCCCcEEEeChhHhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEEc
Confidence 68999999999999999999999999999999999999999999987789999999999999999999999999999888
Q ss_pred cCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCccccccc
Q 030139 93 PKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 172 (182)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l 172 (182)
.++.++...+..|..+++++.+.+..+...+|++||||||++|||+|+.++++.|+++|+++++++|++++.+.+|.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v~v~vl~~~~~~~g~~~l 162 (175)
T PRK02304 83 PGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVIELPDLGGREKL 162 (175)
T ss_pred CCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEEEEEEEEEcccccchhhc
Confidence 76655444444554444556666654456899999999999999999999999999999999999999999876788888
Q ss_pred CCCCccccc
Q 030139 173 GEKPLFVLV 181 (182)
Q Consensus 173 ~~~~~~~l~ 181 (182)
.++|++||+
T Consensus 163 ~~~~~~sl~ 171 (175)
T PRK02304 163 EGYPVKSLV 171 (175)
T ss_pred CCCceEEEE
Confidence 889999986
No 4
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=99.98 E-value=5.3e-31 Score=201.97 Aligned_cols=166 Identities=56% Similarity=0.942 Sum_probs=145.0
Q ss_pred HhhccccCCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCC
Q 030139 16 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKK 95 (182)
Q Consensus 16 l~~~~r~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~ 95 (182)
|+++++.+|+||.||+.|+|++.++.+|+.++.+++.|++.+.+.++|+|+|++.+|+++|..+|..+++|+..++|.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~d~~~~l~~p~~~~~~~~~la~~i~~~~~d~ivgi~~~G~~~A~~la~~L~~~~~~i~k~~~ 80 (169)
T TIGR01090 1 LKQSIRSIPDFPKKGILFRDITPLLNNPELFRFLIDLLVERYKDANIDYIVGPEARGFIFGAALAYKLGVGFVPVRKPGK 80 (169)
T ss_pred ChhhcccCCCCCCCCceeEeChhhhcCHHHHHHHHHHHHHHhccCCCCEEEeehhccHHHHHHHHHHHCCCEEEEEeCCC
Confidence 56788999999999999999999999999999999999999987788999999999999999999999999988887766
Q ss_pred CCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCcccccccCC-
Q 030139 96 LPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGE- 174 (182)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~- 174 (182)
.++...+..++.+++++.+++......+|++||||||++|||+|+.++++.|+++|++++.+++++++.+.+|.+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~v~~~~l~~~~~~~g~~~i~~~ 160 (169)
T TIGR01090 81 LPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATGGTAEATDELIRKLGGEVVEAAFLIELKDLNGRAKLEPN 160 (169)
T ss_pred CCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccchHHHHHHHHHHHHcCCEEEEEEEEEEccccChHHHhccC
Confidence 5555555555444555556655444579999999999999999999999999999999999999999988788888866
Q ss_pred CCccccc
Q 030139 175 KPLFVLV 181 (182)
Q Consensus 175 ~~~~~l~ 181 (182)
+|++||+
T Consensus 161 ~~~~sl~ 167 (169)
T TIGR01090 161 VPVFSLL 167 (169)
T ss_pred CceEEEE
Confidence 7999886
No 5
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=99.97 E-value=2.1e-29 Score=194.58 Aligned_cols=171 Identities=50% Similarity=0.798 Sum_probs=154.8
Q ss_pred hHHHHHhhccccCCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEee
Q 030139 11 PRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPM 90 (182)
Q Consensus 11 ~~~~~l~~~~r~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~ 90 (182)
.-.+.|.+.+|..|.|+++++.|.|....+.++..+...+..+++.+++.++|.|++++++||++|..+|..||+|++++
T Consensus 3 ~~~~~L~~~i~~~~~~~~~g~~f~d~~~~~~~~~~~~~~i~~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 3 ELMELLKDSIREIPDFPKGGILFVDITLLLGDPELLAKLIDELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred hHHHHHHHHHhhcccccCCCceEEecchhhcCcHHHHHHHHHHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 35678999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred eccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCccccc
Q 030139 91 RKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRE 170 (182)
Q Consensus 91 rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~ 170 (182)
||.++.+.......|..+++...+++..+.+.+|++|+||||++.||+|+.+++++++++|+++++++++++..+.+++.
T Consensus 83 RK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~ie~~~~~gr~ 162 (179)
T COG0503 83 RKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAAFVIELGELDGRK 162 (179)
T ss_pred EecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcChHHHHHHHHHHHCCCEEEEEEEEEEcCccccch
Confidence 99998877766666665666667888777778999999999999999999999999999999999999999999988898
Q ss_pred ccCC--CCccccc
Q 030139 171 RLGE--KPLFVLV 181 (182)
Q Consensus 171 ~l~~--~~~~~l~ 181 (182)
++.. .|++++.
T Consensus 163 ~l~~~~~~v~~l~ 175 (179)
T COG0503 163 KLEDDGLPVFSLV 175 (179)
T ss_pred hhccCCceEEEEE
Confidence 8876 6777664
No 6
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=99.96 E-value=2.6e-27 Score=184.17 Aligned_cols=165 Identities=26% Similarity=0.371 Sum_probs=133.7
Q ss_pred HHHhhccccCCCCCCCCc--eEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEeee
Q 030139 14 AGISSAIRVIPDFPKPGI--MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMR 91 (182)
Q Consensus 14 ~~l~~~~r~~~~~~~~~~--~~~d~~~l~~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~r 91 (182)
.+|...+|++|+++.+|+ .|.|...++. |+.++.++..|++.+ +.++|+|+|++.+|+++|..+|..+++|+.+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~l~-P~~l~~~~~~l~~~~-~~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~~r 81 (187)
T PRK12560 4 KNLYKNARVVNSGKALTTVNEFTDQLPALR-PKVLKETAKEIIKYI-DKDIDKIVTEEDKGAPLATPVSLLSGKPLAMAR 81 (187)
T ss_pred HHHHhhCCccCCCCCCCcceeEEeChhhcC-HHHHHHHHHHHHHHh-CCCCCEEEEEccccHHHHHHHHHhhCCCEEEec
Confidence 346678999999999998 7999999999 999999999999988 678999999999999999999999999999998
Q ss_pred ccCCCCCceeeeeeeeeccceeEE--EEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCcccc
Q 030139 92 KPKKLPGEVISEEYSLEYGKDVME--MHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGR 169 (182)
Q Consensus 92 k~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~ 169 (182)
|.+.......... .+++...++ +..+...+|++||||||+++||+|+.+++++++++|+.++++++++++.+.+++
T Consensus 82 k~~~~~~~~~~~~--~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~vvd~~~~~g~ 159 (187)
T PRK12560 82 WYPYSLSELNYNV--VEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICVIEKTQNNGR 159 (187)
T ss_pred cCCCcccceeEEe--eeeeccceeeeeEccCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEecccchH
Confidence 7653221111000 111111122 222345789999999999999999999999999999999999999999866778
Q ss_pred ccc---CCCCcccccC
Q 030139 170 ERL---GEKPLFVLVS 182 (182)
Q Consensus 170 ~~l---~~~~~~~l~~ 182 (182)
+.+ .+.|++||++
T Consensus 160 ~~l~~~~gv~v~sl~~ 175 (187)
T PRK12560 160 KKLFTQTGINVKSLVK 175 (187)
T ss_pred HHHhhccCCcEEEEEE
Confidence 887 4678888863
No 7
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=99.96 E-value=1.7e-27 Score=185.65 Aligned_cols=168 Identities=23% Similarity=0.315 Sum_probs=138.0
Q ss_pred chHHHHHhhccccCCCCCCCCceEEech-hhhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeE
Q 030139 10 DPRIAGISSAIRVIPDFPKPGIMFQDIT-TLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFV 88 (182)
Q Consensus 10 ~~~~~~l~~~~r~~~~~~~~~~~~~d~~-~l~~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~ 88 (182)
++.+++|.+.=|.+|+ ++.|.+.. +...+|+.++.++..+++.+.+.++|+|++++.+|+++|+.+|..+|+|++
T Consensus 2 ~~l~~~~~~~~~~~~~----~~i~~~~~~~~~~~p~~l~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v 77 (191)
T TIGR01744 2 ELLKQKIKEEGVVLPG----GILKVDSFLNHQIDPKLMQEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVV 77 (191)
T ss_pred hHHHHHHhcCCEEcCC----CEEEEehhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEE
Confidence 4678899999999998 87665532 223699999999999999998888999999999999999999999999999
Q ss_pred eeeccCCCCC--ceee---eeeeeeccceeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEec
Q 030139 89 PMRKPKKLPG--EVIS---EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIEL 163 (182)
Q Consensus 89 ~~rk~~~~~~--~~~~---~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~ 163 (182)
++||..+.+. .... .+|.. ++...+++..+.+.+|+||+||||++|||+|+.+++++++++|++++++++++++
T Consensus 78 ~vRK~~k~~~~~~~~~~~~~s~~~-~~~~~l~i~~~~l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~ 156 (191)
T TIGR01744 78 FARKKKPLTLTDNLLTASVHSFTK-QTTSTVAVSGEFLSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEK 156 (191)
T ss_pred EEEeCCCCCCCCcceEEEEEEeec-CccEEEEEEHHhCCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEe
Confidence 9998865432 2222 22221 2344567766666799999999999999999999999999999999999999999
Q ss_pred CCcccccccC--CCCcccccC
Q 030139 164 PELKGRERLG--EKPLFVLVS 182 (182)
Q Consensus 164 ~~~~~~~~l~--~~~~~~l~~ 182 (182)
.+.+++++|. ++|++||++
T Consensus 157 ~~~~g~~~l~~~gvpv~sL~~ 177 (191)
T TIGR01744 157 SFQNGRQELVELGYRVESLAR 177 (191)
T ss_pred cCccHHHHHHhcCCcEEEEEE
Confidence 8778888885 478988863
No 8
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=99.96 E-value=1.9e-27 Score=184.96 Aligned_cols=166 Identities=27% Similarity=0.353 Sum_probs=137.3
Q ss_pred chHHHHHhhccccCCCCCCCCceEEechhhh---cCHHHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCC
Q 030139 10 DPRIAGISSAIRVIPDFPKPGIMFQDITTLL---LDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAK 86 (182)
Q Consensus 10 ~~~~~~l~~~~r~~~~~~~~~~~~~d~~~l~---~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp 86 (182)
++.++++...=|.+|+ ||.| ++.++ .+|+.++.++..+++.+.+.++|+|+|++.+|+++|+.+|..+|+|
T Consensus 2 ~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~P~~l~~i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p 75 (189)
T PRK09219 2 KLLEERILKDGKVLSG----NILK--VDSFLNHQVDPKLMNEIGKEFARRFKDEGITKILTIEASGIAPAVMAALALGVP 75 (189)
T ss_pred hHHHHHHhcCCEEcCC----CEEE--EhhhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCC
Confidence 3567788888888988 7655 45455 8999999999999999988889999999999999999999999999
Q ss_pred eEeeeccCCCC--Cceeeeeee-eec-cceeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEe
Q 030139 87 FVPMRKPKKLP--GEVISEEYS-LEY-GKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 162 (182)
Q Consensus 87 ~~~~rk~~~~~--~~~~~~~~~-~~~-~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~ 162 (182)
++++||..+.+ ++..+..+. .+. ....+++..+...+|++|+||||+++||+|+.+++++++++|+++++++++++
T Consensus 76 ~v~vRK~~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~lvd 155 (189)
T PRK09219 76 VVFAKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIVIE 155 (189)
T ss_pred EEEEEECCCCCCCCceEEEEEeeeccCceEEEEEEhhhCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEEEEE
Confidence 99999987653 343332221 112 23457777777789999999999999999999999999999999999999999
Q ss_pred cCCcccccccCC--CCccccc
Q 030139 163 LPELKGRERLGE--KPLFVLV 181 (182)
Q Consensus 163 ~~~~~~~~~l~~--~~~~~l~ 181 (182)
+...+|++++.+ .|+++|+
T Consensus 156 ~~~~~g~~~l~~~g~~~~sl~ 176 (189)
T PRK09219 156 KSFQDGRKLLEEKGYRVESLA 176 (189)
T ss_pred ccCccHHHHHHhcCCcEEEEE
Confidence 876678888754 6788876
No 9
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=99.96 E-value=2.6e-27 Score=192.28 Aligned_cols=163 Identities=21% Similarity=0.393 Sum_probs=139.7
Q ss_pred chHHHHHhhccccCCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEe
Q 030139 10 DPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP 89 (182)
Q Consensus 10 ~~~~~~l~~~~r~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~ 89 (182)
++.|++|.+.-|++|+ | |++++.++.+|..++.+++.++..+.+.++|+|++++.+|+|+|.++|.+||+|+++
T Consensus 83 ~~l~~~l~~~~rilpg----g--~~~~s~ll~~P~~l~~ig~~la~~~~~~~iD~VvgvetkGIpLA~avA~~L~vp~vi 156 (268)
T TIGR01743 83 EELCQSLSEPERILPG----G--YLYLTDILGKPSILSKIGKILASVFAEREIDAVMTVATKGIPLAYAVASVLNVPLVI 156 (268)
T ss_pred HHHHHHHHHCCCcccC----C--eEEechhhcCHHHHHHHHHHHHHHhcCCCCCEEEEEccchHHHHHHHHHHHCCCEEE
Confidence 5678899999999988 6 455889999999999999999999988889999999999999999999999999999
Q ss_pred eeccCCC-CCceeeeeeeeecc--ceeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCc
Q 030139 90 MRKPKKL-PGEVISEEYSLEYG--KDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPEL 166 (182)
Q Consensus 90 ~rk~~~~-~~~~~~~~~~~~~~--~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~ 166 (182)
+||..+. ++++.+..|...+. .+.+++.++.+.+|+|||||||+++||+|+.+++++++++|++++++++++++.
T Consensus 157 vRK~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlve~~-- 234 (268)
T TIGR01743 157 VRKDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMKAGGTINGMINLLDEFDAEVAGIGVLIDNE-- 234 (268)
T ss_pred EEECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEeeecccCHHHHHHHHHHHHCCCEEEEEEEEEECC--
Confidence 9998876 66777777754322 235777777778999999999999999999999999999999999999999996
Q ss_pred ccccccCCCCccccc
Q 030139 167 KGRERLGEKPLFVLV 181 (182)
Q Consensus 167 ~~~~~l~~~~~~~l~ 181 (182)
++++++. .+++||+
T Consensus 235 ~~~~~l~-~~~~SL~ 248 (268)
T TIGR01743 235 GVDEKLV-DDYMSLL 248 (268)
T ss_pred CChHHcC-CCceEEE
Confidence 3455553 3677765
No 10
>PRK09213 pur operon repressor; Provisional
Probab=99.95 E-value=5.7e-27 Score=190.69 Aligned_cols=163 Identities=26% Similarity=0.446 Sum_probs=138.5
Q ss_pred chHHHHHhhccccCCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEe
Q 030139 10 DPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP 89 (182)
Q Consensus 10 ~~~~~~l~~~~r~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~ 89 (182)
++.+++|.+..|.+|+ + |++++.++.+|..++.+++.++..+.+.++|+|++++.+|+|+|..+|.+||+|+++
T Consensus 85 ~~L~~~L~~~~rilpG----g--f~y~sdll~~P~~l~~i~~~la~~~~~~~iD~Vvtvet~GIplA~~vA~~L~vp~vi 158 (271)
T PRK09213 85 EELCERLSEPDRILPG----G--YLYLSDLLGNPSILRKIGRIIASAFADKKIDAVMTVETKGIPLAYAVANYLNVPFVI 158 (271)
T ss_pred HHHHHHHHhCCccCCC----C--eEEeCcccCCHHHHHHHHHHHHHHhcccCCCEEEEEccccHHHHHHHHHHHCCCEEE
Confidence 5678889999999988 5 456788999999999999999999988789999999999999999999999999999
Q ss_pred eeccCCC-CCceeeeeeeeecc--ceeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCc
Q 030139 90 MRKPKKL-PGEVISEEYSLEYG--KDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPEL 166 (182)
Q Consensus 90 ~rk~~~~-~~~~~~~~~~~~~~--~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~ 166 (182)
+||..+. ++++.+..|..... ...+++.++.+.+|++||||||+++||+|+.+++++++++|++++++++++++.+
T Consensus 159 vRK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlVd~~~- 237 (271)
T PRK09213 159 VRRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEGSRVLIVDDFMKAGGTINGMISLLKEFDAEVVGIGVLVETKE- 237 (271)
T ss_pred EEECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCcCEEEEEeeecccCHhHHHHHHHHHHCCCEEEEEEEEEECCC-
Confidence 9998775 66777766654222 2357777777789999999999999999999999999999999999999999863
Q ss_pred ccccccCCCCccccc
Q 030139 167 KGRERLGEKPLFVLV 181 (182)
Q Consensus 167 ~~~~~l~~~~~~~l~ 181 (182)
+.+++. .|++||+
T Consensus 238 -~~~~l~-~~~~SL~ 250 (271)
T PRK09213 238 -PEERLV-DDYVSLL 250 (271)
T ss_pred -ChhhcC-CceEEEE
Confidence 445443 3677765
No 11
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=99.94 E-value=2.6e-26 Score=178.32 Aligned_cols=136 Identities=26% Similarity=0.438 Sum_probs=119.8
Q ss_pred eEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccc
Q 030139 32 MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGK 111 (182)
Q Consensus 32 ~~~d~~~l~~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~ 111 (182)
.|+|+..++.+|+.++.+++.|++.+.+.++|.|+|++.+|+|+|+.+|..+|+|++++||..+ +++.
T Consensus 44 ~yiD~~~~~~~p~~~~~i~~~la~~~~~~~~d~I~g~~~~GiplA~~vA~~l~~p~v~vRK~~k------------~~g~ 111 (187)
T PRK13810 44 YYIDIKKASTDPKTLKLIARQAALRIKEMDVDTVAGVELGGVPLATAVSLETGLPLLIVRKSVK------------DYGT 111 (187)
T ss_pred EEEECchhcCCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCCC------------ccCC
Confidence 7999999999999999999999999988789999999999999999999999999999998764 2233
Q ss_pred eeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCcccccccCC--CCcccccC
Q 030139 112 DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGE--KPLFVLVS 182 (182)
Q Consensus 112 ~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~--~~~~~l~~ 182 (182)
..+. .+...+|++|+||||++|||+|+.+++++++++|++++++++++++.+ +++++|.+ +|+++|++
T Consensus 112 ~~~~--~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~~-g~~~~l~~~gi~~~sl~~ 181 (187)
T PRK13810 112 GSRF--VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDREE-GAEENLKEADVELVPLVS 181 (187)
T ss_pred CceE--EccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEECCc-ChHHHHHHcCCcEEEEEE
Confidence 3322 245578999999999999999999999999999999999999999875 78888874 67888763
No 12
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=99.94 E-value=6.6e-26 Score=182.19 Aligned_cols=162 Identities=26% Similarity=0.391 Sum_probs=131.2
Q ss_pred HHHHhhccccCCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEeeec
Q 030139 13 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRK 92 (182)
Q Consensus 13 ~~~l~~~~r~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk 92 (182)
.+.|.+.++++|+ | |+|++.++.+|+.++.+++.++..+.+.++|+|++++.+|+++|..+|..||+|++++||
T Consensus 69 ~~~l~~ri~~~~~----g--y~d~~~il~~p~~~~~v~~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~Rk 142 (238)
T PRK08558 69 EEEVKARIKVDDE----G--YVDNSSVVFDPSFLRLIAPVVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYAKK 142 (238)
T ss_pred HHHHHhhcccCCC----C--EEEchhhhcCHHHHHHHHHHHHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEEEe
Confidence 4445666666765 4 789999999999999999999999987789999999999999999999999999999988
Q ss_pred cCCCC-Cceeeeeeeeec-cc-eeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCcccc
Q 030139 93 PKKLP-GEVISEEYSLEY-GK-DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGR 169 (182)
Q Consensus 93 ~~~~~-~~~~~~~~~~~~-~~-~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~ 169 (182)
.++.+ +.+.+ .|.... +. ..+++..+.+.+|++||||||+++||+|+.+++++++++|+++++++++++..+ .++
T Consensus 143 ~~~~~~~~~v~-~y~s~s~~~~~~~~l~~~~l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~~-~~~ 220 (238)
T PRK08558 143 SKETGVEKFYE-EYQRLASGIEVTLYLPASALKKGDRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVGE-VGI 220 (238)
T ss_pred cCCCCCcceEE-EeeccCCCceeEEEecHHHcCCcCEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecCc-hHH
Confidence 65432 23333 443221 21 345555556789999999999999999999999999999999999999999875 456
Q ss_pred cccC---CCCcccccC
Q 030139 170 ERLG---EKPLFVLVS 182 (182)
Q Consensus 170 ~~l~---~~~~~~l~~ 182 (182)
+++. +.|+.++++
T Consensus 221 ~~l~~~~~vpv~sl~~ 236 (238)
T PRK08558 221 DRAREETDAPVDALYT 236 (238)
T ss_pred HHHhHhcCCCEEEEEE
Confidence 6664 578888763
No 13
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=99.93 E-value=1e-24 Score=171.71 Aligned_cols=144 Identities=19% Similarity=0.297 Sum_probs=121.2
Q ss_pred CCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeee
Q 030139 24 PDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISE 103 (182)
Q Consensus 24 ~~~~~~~~~~~d~~~l~~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~ 103 (182)
++..+| .|+|++.++.+|..++.++..+++.+.+.++|+|+|++.+|+++|..+|..+++|+.+.||..+.+++.
T Consensus 32 SG~~S~--~y~D~~~i~~~p~~l~~i~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~vA~~l~~p~~~~RK~~K~~G~~--- 106 (206)
T PRK13809 32 SGEETP--IYVDMRLVISSPEVLQTIATLIWRLRPSFNSSLLCGVPYTALTLATSISLKYNIPMVLRRKELKNVDPS--- 106 (206)
T ss_pred CcCCCC--EEEEChhhccCHHHHHHHHHHHHHHhccCCCCEEEEecCccHHHHHHHHHHhCCCEEEEeCCCCCCCCc---
Confidence 344444 789999999999999999999999987778999999999999999999999999999999877643321
Q ss_pred eeeeeccceeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCcccccccC--CCCccccc
Q 030139 104 EYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG--EKPLFVLV 181 (182)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~--~~~~~~l~ 181 (182)
+.+.+ .+...+|++|+||||++|||+|+.+++++|+++|++++++++++++. .++.+++. +.|++||+
T Consensus 107 --------~~~~~-~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~-~~~~~~l~~~gi~v~sl~ 176 (206)
T PRK13809 107 --------DAIKV-EGLFTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQ-KGACQPLGPQGIKLSSVF 176 (206)
T ss_pred --------CEEEE-ccccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECc-ccHHHHHHhcCCCEEEEE
Confidence 12222 23457899999999999999999999999999999999999999986 36777775 46888876
Q ss_pred C
Q 030139 182 S 182 (182)
Q Consensus 182 ~ 182 (182)
+
T Consensus 177 ~ 177 (206)
T PRK13809 177 T 177 (206)
T ss_pred E
Confidence 3
No 14
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.93 E-value=4.5e-24 Score=164.88 Aligned_cols=162 Identities=28% Similarity=0.399 Sum_probs=123.7
Q ss_pred HhhccccCCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCC
Q 030139 16 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKK 95 (182)
Q Consensus 16 l~~~~r~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~ 95 (182)
++...||+|+|+.++..+++...++.+|..++.+++.|++.+.. ++|+|+|++.+|+++|..+|..+++|+...+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~i~~~k~~~dp~l~~~~~~~La~~l~~-~~d~Iv~v~~gGiplA~~lA~~L~~p~~~~~k~~~ 86 (178)
T PRK07322 8 VGGVTRELPLIRVGPDLAIALFVILGDTELTEAAAEALAKRLPT-EVDVLVTPETKGIPLAHALSRRLGKPYVVARKSRK 86 (178)
T ss_pred EcCEEeecCeeEeCCCCEEEEEhhhCCHHHHHHHHHHHHHHcCC-CCCEEEEeccCCHHHHHHHHHHHCCCEEEEEEeCC
Confidence 45678999999988777889999999999999999999999976 78999999999999999999999999988876543
Q ss_pred C--CCceeeeeeeeecccee-EEEEcc--ccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCccccc
Q 030139 96 L--PGEVISEEYSLEYGKDV-MEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRE 170 (182)
Q Consensus 96 ~--~~~~~~~~~~~~~~~~~-~~l~~~--~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~ 170 (182)
. ........+....+... +.+... ...+|++|+||||+++||+|+.++++.|+++|++++++++++++.+...+-
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~~~~v~~~~~~~~~~ 166 (178)
T PRK07322 87 PYMQDPIIQEVVSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVSTGGTLTALERLVERAGGQVVAKAAIFAEGDASNRL 166 (178)
T ss_pred CCCCCceEEEEEEEEeccceEEEecCccccccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEcCCCCCCC
Confidence 2 22221111111112222 222211 125799999999999999999999999999999999999999987533332
Q ss_pred c---cCCCCcc
Q 030139 171 R---LGEKPLF 178 (182)
Q Consensus 171 ~---l~~~~~~ 178 (182)
. +.+.|+|
T Consensus 167 ~~~~~~~~~~~ 177 (178)
T PRK07322 167 DVIYLAHLPLF 177 (178)
T ss_pred ceEeecccCCC
Confidence 2 3345554
No 15
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=99.92 E-value=3.7e-24 Score=164.98 Aligned_cols=143 Identities=22% Similarity=0.319 Sum_probs=117.7
Q ss_pred ccCCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCce
Q 030139 21 RVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEV 100 (182)
Q Consensus 21 r~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~ 100 (182)
..-++.++| .|+|.+.+..+|+.++.+++.+++.+.+ .|+|+|++.+|+++|..+|..+|+|+.+.||.++.
T Consensus 22 ~l~SG~~S~--~yid~~~~~~~p~~~~~i~~~l~~~i~~--~d~ivg~~~ggi~lA~~lA~~l~~p~~~~rk~~k~---- 93 (176)
T PRK13812 22 ELSHGGTSE--YYVDKYLFETDPDCLRLIAEAFADRIDE--DTKLAGVALGAVPLVAVTSVETGVPYVIARKQAKE---- 93 (176)
T ss_pred EECcCCcCC--EEEeCeeccCCHHHHHHHHHHHHHHhcc--CCEEEEeecchHHHHHHHHHHHCCCEEEEeccCCc----
Confidence 333344444 7899999999999999999999998854 38999999999999999999999999999987652
Q ss_pred eeeeeeeeccceeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCcccccccC--CCCcc
Q 030139 101 ISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG--EKPLF 178 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~--~~~~~ 178 (182)
++..... .+...+|++|+||||+++||+|+.++++.|++.|++++++++++++. .++++++. ++|++
T Consensus 94 --------yg~~~~~--~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~vlvdr~-~~~~~~l~~~g~~v~ 162 (176)
T PRK13812 94 --------YGTGNRI--EGRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLVVVDRE-EGARENLADHDVELE 162 (176)
T ss_pred --------CCCCCeE--EecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEEEEECC-cchHHHHHhcCCcEE
Confidence 2222111 13446899999999999999999999999999999999999999986 36677764 57888
Q ss_pred cccC
Q 030139 179 VLVS 182 (182)
Q Consensus 179 ~l~~ 182 (182)
+|++
T Consensus 163 sL~~ 166 (176)
T PRK13812 163 ALVT 166 (176)
T ss_pred EEEe
Confidence 8863
No 16
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=99.92 E-value=4.4e-24 Score=164.20 Aligned_cols=147 Identities=16% Similarity=0.268 Sum_probs=123.5
Q ss_pred cccCCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcC-CCccEEEeeCCCChhhHHHHHHHhCCC-----eEeeecc
Q 030139 20 IRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKD-KNISVVAGIEARGFIFGPPIALAIGAK-----FVPMRKP 93 (182)
Q Consensus 20 ~r~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~la~~~~~-~~~d~Iv~v~~~G~~~a~~la~~l~vp-----~~~~rk~ 93 (182)
+..-.+.++| .|+|+..++.+|+.++.++..+++.+.+ .++|+|+|++.+|+++|..+|..+++| +.+.||.
T Consensus 14 f~l~SG~~s~--~y~d~~~i~~~p~~~~~v~~~~~~~~~~~~~~d~Ivg~~~gG~~~A~~la~~l~~~~~~~~~~~~rk~ 91 (173)
T TIGR00336 14 FTLSSGRKSP--YYFNIKLFNTGPELANLIARYAAAIIKSHLEFDVIAGPALGGIPIATAVSVKLAKPGGDIPLCFNRKE 91 (173)
T ss_pred EEECCCCcCC--EEEECeecCChHHHHHHHHHHHHHHHHhcCCCCEEEccccChHHHHHHHHHHhcCcCCCceEEEEcCC
Confidence 5555566666 6899999999999999999999998876 689999999999999999999999999 8888876
Q ss_pred CCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCcccccccC
Q 030139 94 KKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG 173 (182)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~ 173 (182)
++.. +...+ ..+...+|++||||||+++||+|+.+++++|+++|+++++++|++++.+.++++++.
T Consensus 92 ~k~~------------g~~~~--~~g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~~~~vlvdr~~~~~~~~l~ 157 (173)
T TIGR00336 92 AKDH------------GEGGN--IEGELLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAGVIIAVDRQERSAGQEFE 157 (173)
T ss_pred cccC------------CCCCc--eecCCCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEEEEEEEEecCchhHHHHHH
Confidence 5421 11111 113456899999999999999999999999999999999999999998767888875
Q ss_pred ---CCCcccccC
Q 030139 174 ---EKPLFVLVS 182 (182)
Q Consensus 174 ---~~~~~~l~~ 182 (182)
++|++||+.
T Consensus 158 ~~~gv~~~sl~~ 169 (173)
T TIGR00336 158 KEYGLPVISLIT 169 (173)
T ss_pred HhcCCeEEEEEe
Confidence 678998863
No 17
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=99.92 E-value=8.5e-24 Score=162.19 Aligned_cols=132 Identities=27% Similarity=0.429 Sum_probs=111.4
Q ss_pred eEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccc
Q 030139 32 MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGK 111 (182)
Q Consensus 32 ~~~d~~~l~~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~ 111 (182)
.|+|+..++.+|+.++.+++.+++.+ ++|+|+|++.+|+++|..+|..+|+|+.++||.++.. +.
T Consensus 30 ~y~d~~~l~~~p~~~~~l~~~l~~~~---~~d~Vvg~~~gGi~~A~~~a~~l~~p~~~~rK~~k~~------------g~ 94 (170)
T PRK13811 30 YYIDIKTAITHPALLKEIAAEVAKRY---DFDVVAGVAVGGVPLAVAVSLAAGKPYAIIRKEAKDH------------GK 94 (170)
T ss_pred EEEeCchhccCHHHHHHHHHHHHhhC---CCCEEEecCcCcHHHHHHHHHHHCCCEEEEecCCCCC------------CC
Confidence 67899999999999999999987643 6899999999999999999999999999999876421 22
Q ss_pred eeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCcccccccC--CCCcccccC
Q 030139 112 DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG--EKPLFVLVS 182 (182)
Q Consensus 112 ~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~--~~~~~~l~~ 182 (182)
..+.. + ..+|++|+||||+++||+|+.+++++|+++|++++++++++++.+ ++++++. ++|+++|++
T Consensus 95 ~~~~~--g-~~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~vdr~~-g~~~~l~~~gv~~~sl~~ 163 (170)
T PRK13811 95 AGLII--G-DVKGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVVDREQ-GAEELLAELGITLTPLVR 163 (170)
T ss_pred cceEE--c-ccCCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEEEECCc-cHHHHHHhcCCcEEEEeE
Confidence 22221 2 268999999999999999999999999999999999999999974 5677765 568888863
No 18
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=99.91 E-value=3.8e-23 Score=160.77 Aligned_cols=142 Identities=27% Similarity=0.417 Sum_probs=115.9
Q ss_pred cccCCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcCC--CccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCC
Q 030139 20 IRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDK--NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLP 97 (182)
Q Consensus 20 ~r~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~la~~~~~~--~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~ 97 (182)
++.-.+...| .|+|++.++.+|+.++.++..|++.+.+. ++|+|+|++.+|+++|..+|..+++|+.+.+|.+.
T Consensus 17 f~l~sg~~s~--~yid~~~l~~~p~~~~~~~~~La~~i~~~~~~~d~Ivgi~~gGi~~A~~la~~L~~~~i~~~k~~~-- 92 (187)
T TIGR01367 17 FLLSSGKHSP--YFLQSATLLEHPEALMELGGELAQKILDYGLKVDFIVGPAMGGVILGYEVARQLSVRSIFAEREGG-- 92 (187)
T ss_pred EEecCCCcCC--eeEechhhhcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEccCcHHHHHHHHHHhCCCeEEEEEeCC--
Confidence 3444444445 68999999999999999999999999764 78999999999999999999999999987765431
Q ss_pred CceeeeeeeeeccceeEEEEcc-ccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCcccccccCCCC
Q 030139 98 GEVISEEYSLEYGKDVMEMHVG-AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKP 176 (182)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~l~~~-~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~~~ 176 (182)
.+.+..+ ...+|++||||||+++||+||.++++.|+++|++++++++++++.+ +.....++|
T Consensus 93 ---------------~~~~~~~~~l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv~~~vlid~~~--~~~~~~~~~ 155 (187)
T TIGR01367 93 ---------------GMKLRRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVVGLACIIDRSQ--GGKPDSGVP 155 (187)
T ss_pred ---------------cEEEeecccCCCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEEEEEEEEECcC--CCcccCCCC
Confidence 1111112 2468999999999999999999999999999999999999999873 444555788
Q ss_pred cccccC
Q 030139 177 LFVLVS 182 (182)
Q Consensus 177 ~~~l~~ 182 (182)
++++++
T Consensus 156 ~~sl~~ 161 (187)
T TIGR01367 156 LMSLKE 161 (187)
T ss_pred EEEEEE
Confidence 888763
No 19
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.91 E-value=5.9e-23 Score=161.33 Aligned_cols=145 Identities=22% Similarity=0.340 Sum_probs=115.5
Q ss_pred CCCCceEEechhhhcCHHHHHHHHHHHHHHhc--CCCccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeee
Q 030139 27 PKPGIMFQDITTLLLDTKAFRDTIDLFVERYK--DKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEE 104 (182)
Q Consensus 27 ~~~~~~~~d~~~l~~~~~~~~~~~~~la~~~~--~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~ 104 (182)
|.|+..|+|+..+..+|+.++.+++.|++.+. +.++|+|+|++.+|+++|+.+|..+++|+...++.+...+...
T Consensus 49 ~~~~~~yid~~~~~~~~~~l~~i~~~la~~i~~~~~~~D~Ivgi~~gG~~~A~~lA~~L~~~~~~~~~~k~~~~~~~--- 125 (200)
T PRK02277 49 PAPKDIHIDWSSIGSSSSRLRYIASAMADMLEKEDEEVDVVVGIAKSGVPLATLVADELGKDLAIYHPKKWDHGEGE--- 125 (200)
T ss_pred CCCCCEEEEChhhccCHHHHHHHHHHHHHHHHhcCCCCCEEEeeccCCHHHHHHHHHHhCCCcEEEecccccccccc---
Confidence 34566899999999999999999999999874 3679999999999999999999999999977765432111000
Q ss_pred eeeeccceeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCcccccccCCCCcccccC
Q 030139 105 YSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLVS 182 (182)
Q Consensus 105 ~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~~~~~~l~~ 182 (182)
.....+.. .....+|++|+||||++|||+|+.++++.|+++|+++++++|++++. +.+++.+.|++||++
T Consensus 126 ----~~~~~~~~-~~~~~~gk~VlIVDDVitTG~Tl~~ai~~l~~~Ga~~v~v~vlvdk~---g~~~~~~vpv~sl~~ 195 (200)
T PRK02277 126 ----KKTGSFSR-NFASVEGKRCVIVDDVITSGTTMKETIEYLKEHGGKPVAVVVLIDKS---GIDEIDGVPVYSLIR 195 (200)
T ss_pred ----cccceecc-ccccCCcCEEEEEeeccCchHHHHHHHHHHHHcCCEEEEEEEEEECc---chhhhcCCCeEEEEE
Confidence 00111110 01247899999999999999999999999999999999999999984 566778899999874
No 20
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=99.90 E-value=6.3e-23 Score=178.48 Aligned_cols=135 Identities=19% Similarity=0.359 Sum_probs=119.2
Q ss_pred eEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccc
Q 030139 32 MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGK 111 (182)
Q Consensus 32 ~~~d~~~l~~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~ 111 (182)
.|+|++.++.+|..++.+++.+++.+++.++|.|+|++.+|+|+|+.+|..+|+|+++.||..| +++.
T Consensus 315 ~YiD~~~lls~P~~l~~v~~~la~~l~~~~~D~I~Gia~gGiPlAt~lA~~lg~p~v~vRKe~K------------~~G~ 382 (477)
T PRK05500 315 YYIDLRKIISNPQLFHQVLSAYAEILKNLTFDRIAGIPYGSLPTATGLALHLHHPMIFPRKEVK------------AHGT 382 (477)
T ss_pred EEEEChhhhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCcC------------ccCC
Confidence 7999999999999999999999999987789999999999999999999999999999998865 2333
Q ss_pred eeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCcccccccCC--CCccccc
Q 030139 112 DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGE--KPLFVLV 181 (182)
Q Consensus 112 ~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~--~~~~~l~ 181 (182)
..+ ..+...+|++|+|||||+|||+|+.++++.|++.|++++++++++++.+ +++++|.+ +|++||+
T Consensus 383 ~~~--ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~vlVDR~~-g~~~~L~~~gv~~~Sl~ 451 (477)
T PRK05500 383 RRL--IEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFIDHEQ-GVKDKLQSHGYQAYSVL 451 (477)
T ss_pred Cce--EecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECCc-chHHHHHhcCCCEEEEE
Confidence 332 2345678999999999999999999999999999999999999999975 77888864 6788876
No 21
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=99.90 E-value=1.5e-22 Score=159.30 Aligned_cols=134 Identities=28% Similarity=0.416 Sum_probs=113.2
Q ss_pred eEEechhhhcCHHHHHHHHHHHHHHhcCC--CccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeec
Q 030139 32 MFQDITTLLLDTKAFRDTIDLFVERYKDK--NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEY 109 (182)
Q Consensus 32 ~~~d~~~l~~~~~~~~~~~~~la~~~~~~--~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~ 109 (182)
.|+|...++.+|..++.++..|++.+.+. ++|+|+|++.+|+++|..+|..+++|+.+.+|..+..
T Consensus 33 ~y~d~~~i~~~p~~~~~~~~~la~~i~~~~~~~d~Ivgi~~gG~~~A~~la~~L~~~~~~~rk~~~~~------------ 100 (202)
T PRK00455 33 YYFDCRKLLSYPEALALLGRFLAEAIKDSGIEFDVVAGPATGGIPLAAAVARALDLPAIFVRKEAKDH------------ 100 (202)
T ss_pred eeEeChhhhcCHHHHHHHHHHHHHHHHhcCCCCCEEEecccCcHHHHHHHHHHhCCCEEEEecccCCC------------
Confidence 68899999999999999999999999764 8999999999999999999999999999998765421
Q ss_pred cce-eEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCcccccccC--CCCccccc
Q 030139 110 GKD-VMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG--EKPLFVLV 181 (182)
Q Consensus 110 ~~~-~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~--~~~~~~l~ 181 (182)
+.. .+. +...+|++||||||+++||+|+.++++.|++.|++++++++++++. .++++++. +.|++||+
T Consensus 101 g~~~~~~---~~~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga~~v~~~vlv~~~-~~~~~~~~~~g~~~~sl~ 171 (202)
T PRK00455 101 GEGGQIE---GRRLFGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVIVDRQ-SAAQEVFADAGVPLISLI 171 (202)
T ss_pred CCCceEE---ccCCCCCEEEEEecccCCcHHHHHHHHHHHHcCCEEEEEEEEEECc-chHHHHHHhcCCcEEEEe
Confidence 111 111 2235799999999999999999999999999999999999999996 35566554 46788876
No 22
>PRK06031 phosphoribosyltransferase; Provisional
Probab=99.88 E-value=7.1e-22 Score=158.13 Aligned_cols=153 Identities=20% Similarity=0.392 Sum_probs=112.5
Q ss_pred HHhhccccCCCCCCCCceEEechhhhcCH---HHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCC-eEee
Q 030139 15 GISSAIRVIPDFPKPGIMFQDITTLLLDT---KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAK-FVPM 90 (182)
Q Consensus 15 ~l~~~~r~~~~~~~~~~~~~d~~~l~~~~---~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp-~~~~ 90 (182)
+|..++|.+|+++ .|+..++.++ +.++.+++.|++.+...++|+|+|++.+|+++|..+|..||++ ++.+
T Consensus 41 ~l~~~~r~~~~~~------~~i~~ll~~~~~~~~~~~la~~La~~~~~~~~DvIVgv~~~Gi~lA~~lA~~Lg~~~~vpl 114 (233)
T PRK06031 41 QLLLPIRGLPDGD------RALASLIVNQASFEVLDALAEHLAEKARAFDPDVVAGLPTLGLTLAAAVARKLGHTRYVPL 114 (233)
T ss_pred EeccCcEECCCCC------CchhhHhCChhHHHHHHHHHHHHHHHcccCCCcEEEEeccCCHHHHHHHHHHHCCCCceEE
Confidence 4667777777733 4788888887 5667899999999877789999999999999999999999974 4444
Q ss_pred eccCCCC--Cce-e-eeeeeeeccceeEEEEcc--ccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecC
Q 030139 91 RKPKKLP--GEV-I-SEEYSLEYGKDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELP 164 (182)
Q Consensus 91 rk~~~~~--~~~-~-~~~~~~~~~~~~~~l~~~--~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~ 164 (182)
++.++.. ... . ...+......+.+.+... ...+|++||||||+++||+|+.+++++|+++|++++++++++++.
T Consensus 115 ~~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~~~~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~Vvgv~v~v~~g 194 (233)
T PRK06031 115 GTSRKFWYRDELSVPLSSITTPDQGKRLYIDPRMLPLLEGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGAAMLQS 194 (233)
T ss_pred EEccccccccccccceeeeeccCccceEEecccccccCCCCEEEEEEeEccccHHHHHHHHHHHHcCCeEEEEEEEEEcc
Confidence 4433321 110 0 011110011223444322 246899999999999999999999999999999999999999987
Q ss_pred CcccccccCC
Q 030139 165 ELKGRERLGE 174 (182)
Q Consensus 165 ~~~~~~~l~~ 174 (182)
+ .++++|.+
T Consensus 195 ~-~~~~~l~~ 203 (233)
T PRK06031 195 E-RWRESLAA 203 (233)
T ss_pred c-cHHHHHHh
Confidence 5 67766653
No 23
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.88 E-value=9.6e-22 Score=153.20 Aligned_cols=135 Identities=26% Similarity=0.396 Sum_probs=111.6
Q ss_pred eEEechhhhcCHHHHHHHHHHHHHHhcCC-CccEEEeeCCCChhhHHHHHHHhC-CC-eEeeeccCCCCCceeeeeeeee
Q 030139 32 MFQDITTLLLDTKAFRDTIDLFVERYKDK-NISVVAGIEARGFIFGPPIALAIG-AK-FVPMRKPKKLPGEVISEEYSLE 108 (182)
Q Consensus 32 ~~~d~~~l~~~~~~~~~~~~~la~~~~~~-~~d~Iv~v~~~G~~~a~~la~~l~-vp-~~~~rk~~~~~~~~~~~~~~~~ 108 (182)
+|+|+..+..+|+..+.++..++...++. ++|+|+|++.+|+|+|+.+|..++ .| +.+.||..| +
T Consensus 31 yY~d~~~~~~~p~~~~~i~~~~a~~~~~~~~~d~v~G~a~ggiP~A~~~a~~l~~~~~~~~~Rke~K------------~ 98 (201)
T COG0461 31 YYVDLRLFLTGPELLQLIAFALAEIIKEALEFDVVAGPALGGIPLAAATALALAHLPPMAYVRKEAK------------D 98 (201)
T ss_pred eEEecccccCCHHHHHHHHHHHHHHhhccCCCcEEEeccccchHHHHHHHHHhccCCcEEEEeceec------------c
Confidence 79999999999999999999999888874 899999999999999999999993 22 777887654 3
Q ss_pred ccceeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCcccccccC--CCCccccc
Q 030139 109 YGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG--EKPLFVLV 181 (182)
Q Consensus 109 ~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~--~~~~~~l~ 181 (182)
+|.+... .+...+|++|++|||++|||+++.++++.|+++|+.+++++|++++.+ .+.+.+. +.++++|+
T Consensus 99 hG~~~~i--eG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~ivDR~~-~~~~~~~~~g~~~~sl~ 170 (201)
T COG0461 99 HGTGGLI--EGGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVIVDRQS-GAKEVLKEYGVKLVSLV 170 (201)
T ss_pred CCCccee--EecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEEEEEEEEecch-hHHHHHHhcCCceEEEe
Confidence 3443211 234459999999999999999999999999999999999999999963 5555555 35666665
No 24
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=99.86 E-value=7.9e-21 Score=142.91 Aligned_cols=139 Identities=23% Similarity=0.302 Sum_probs=113.9
Q ss_pred ceEEechhhhcCHHHHHHHHHHHHHH-hcC--CCccEEEeeCCCChhhHHHHHHHhCCCeEeee--ccCCCCCceeeeee
Q 030139 31 IMFQDITTLLLDTKAFRDTIDLFVER-YKD--KNISVVAGIEARGFIFGPPIALAIGAKFVPMR--KPKKLPGEVISEEY 105 (182)
Q Consensus 31 ~~~~d~~~l~~~~~~~~~~~~~la~~-~~~--~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~r--k~~~~~~~~~~~~~ 105 (182)
..|+||+++-..+.-++.++..|+.. +.. .++|+|+|+...|+|+|+++|..||..+...+ |.++..+.
T Consensus 53 Di~i~W~siG~s~sRl~~Is~am~Dm~m~~~~~evDvVvGIa~sGvPlAtmvA~elg~elaiY~PrK~~~de~~------ 126 (203)
T COG0856 53 DIKIDWRSIGKSGSRLRYISEAMADMIMEKVSFEVDVVVGIAISGVPLATMVAYELGKELAIYHPRKHRKDEGA------ 126 (203)
T ss_pred ceEEechhhccchHHHHHHHHHHHHHHHHhccceeEEEEEEeecCccHHHHHHHHhCCceEEEecccccccccC------
Confidence 47899999999999999999999983 332 58999999999999999999999999886654 33332111
Q ss_pred eeeccceeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCcccccccCCCCcccccC
Q 030139 106 SLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLVS 182 (182)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~~~~~~l~~ 182 (182)
+.+...-+....+.||+|+||||++|||+|+.++++.|++.|++.+-+.+++++ .|.+.+++.|+.||++
T Consensus 127 ----~~~G~iS~NFa~V~gK~cvIVDDvittG~Ti~E~Ie~lke~g~kpv~v~VL~dK---~G~dei~gvPi~sLlr 196 (203)
T COG0856 127 ----GKGGSISSNFASVEGKRCVIVDDVITTGSTIKETIEQLKEEGGKPVLVVVLADK---KGVDEIEGVPVESLLR 196 (203)
T ss_pred ----CcCceeecccccccCceEEEEecccccChhHHHHHHHHHHcCCCcEEEEEEEcc---CCcccccCcchHHhhe
Confidence 111111111245899999999999999999999999999999999999999998 6899999999999975
No 25
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=99.85 E-value=1.9e-20 Score=135.68 Aligned_cols=122 Identities=30% Similarity=0.435 Sum_probs=93.3
Q ss_pred hhhcCHHHHHHHHHHHHHHhcC--CCccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEE
Q 030139 38 TLLLDTKAFRDTIDLFVERYKD--KNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVME 115 (182)
Q Consensus 38 ~l~~~~~~~~~~~~~la~~~~~--~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~ 115 (182)
+++.+++.++.+++.|++++.+ .++|.|+|++++|+++|..+|..++.|+....+...... . ............+.
T Consensus 2 ~i~~~~~~~~~~~~~la~~i~~~~~~~~~ivgi~~~G~~~a~~la~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 79 (125)
T PF00156_consen 2 KIILSPEQIEALAERLAEQIKESGFDFDVIVGIPRGGIPLAAALARALGIPLVFVRKRKSYYP-G-SDKTSREKNNQELF 79 (125)
T ss_dssp EEEEBHHHHHHHHHHHHHHHHHHTTTSSEEEEETTTTHHHHHHHHHHHTHEEEEEEEEEEEES-E-EEEEEEETEEEEEE
T ss_pred EEEEcHHHHHHHHHHHHHHHHHhCCCCCEEEeehhccHHHHHHHHHHhCCCccceeeeecccc-c-chhhhhccCceEEe
Confidence 4677899999999999999876 567889999999999999999999999987654321000 0 00000011111222
Q ss_pred EEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEE
Q 030139 116 MHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 161 (182)
Q Consensus 116 l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~ 161 (182)
.......+|++||||||+++||+|+.++++.|+++|++++++++++
T Consensus 80 ~~~~~~~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~~vl~ 125 (125)
T PF00156_consen 80 IIDKEDIKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGVAVLV 125 (125)
T ss_dssp EEESSSGTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEEEEEE
T ss_pred ecccccccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 2334568999999999999999999999999999999999999875
No 26
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.72 E-value=1.2e-16 Score=123.71 Aligned_cols=118 Identities=17% Similarity=0.227 Sum_probs=86.1
Q ss_pred hhcCHHHHHHHHHHHHHHhcC---CCccEEEeeCCCChhhHHHHHHHhCCCeE--eeeccCCCCCceeeeeeeeecccee
Q 030139 39 LLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKFV--PMRKPKKLPGEVISEEYSLEYGKDV 113 (182)
Q Consensus 39 l~~~~~~~~~~~~~la~~~~~---~~~d~Iv~v~~~G~~~a~~la~~l~vp~~--~~rk~~~~~~~~~~~~~~~~~~~~~ 113 (182)
++.+++.++...+.|+.++.+ .+.++|||+..+|+.+|..+|+.+++|+. .+++.+....+. .....
T Consensus 15 ~~~s~~~i~~~i~~la~~i~~~~~~~~~viV~i~~gg~~~A~~La~~l~~~~~~~~l~~~~~~~~~~--------~~~~~ 86 (181)
T PRK09162 15 CLVSAAEVEAAIDRMADEITADLADENPLVLCVMGGGLVFTGQLLPRLDFPLEFDYLHATRYRNETT--------GGELV 86 (181)
T ss_pred EeecHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHHcCCCcccCEEEEEecCCCcc--------CCcee
Confidence 455666777777777776653 34579999999999999999999999863 233222111100 00111
Q ss_pred EEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecC
Q 030139 114 MEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELP 164 (182)
Q Consensus 114 ~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~ 164 (182)
+.+......+|++||||||++|||+|+.++++.|++.|++.|.+++++.+.
T Consensus 87 ~~~~~~~~v~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V~~avL~~k~ 137 (181)
T PRK09162 87 WKVKPRESLKGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSAVLVDKT 137 (181)
T ss_pred EecCCCCCCCCCEEEEEccccCcHHHHHHHHHHHHhCCCCEEEEEEEEEcC
Confidence 121112347899999999999999999999999999999999999999885
No 27
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.72 E-value=7.9e-17 Score=133.76 Aligned_cols=108 Identities=23% Similarity=0.273 Sum_probs=87.9
Q ss_pred CccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCchHHH
Q 030139 61 NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTL 140 (182)
Q Consensus 61 ~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl 140 (182)
+.++|++++.||..++..+|+.+|+|+.+++|.+...++ ..+....+..++|++|+||||++|||+|+
T Consensus 160 ~~~vVVsPd~g~~~~a~~la~~l~~~~~~~~K~R~~~~~------------~~~~~~~~~~v~Gr~vIIVDDIidTG~Tl 227 (301)
T PRK07199 160 PRPLLIGPDEESEQWVAAVAERAGAPHAVLRKTRHGDRD------------VEISLPDAAPWAGRTPVLVDDIVSTGRTL 227 (301)
T ss_pred CCcEEEEeCCChHHHHHHHHHHhCCCEEEEEEEecCCCe------------EEEEeccCcccCCCEEEEEecccCcHHHH
Confidence 457999999999999999999999999988876532111 01111113347899999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEEEEecCCcccccccCCCCcccc
Q 030139 141 SAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVL 180 (182)
Q Consensus 141 ~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~~~~~~l 180 (182)
.++++.|++.||+.+.++++|..+..++.+++.+.++..+
T Consensus 228 ~~aa~~Lk~~GA~~V~~~~tHgvfs~~a~~~l~~~~i~~i 267 (301)
T PRK07199 228 IEAARQLRAAGAASPDCVVVHALFAGDAYSALAAAGIARV 267 (301)
T ss_pred HHHHHHHHHCCCcEEEEEEEeeeCChHHHHHHHhCCCCEE
Confidence 9999999999999999999999998888888877665443
No 28
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.71 E-value=3.2e-16 Score=119.79 Aligned_cols=119 Identities=18% Similarity=0.210 Sum_probs=86.8
Q ss_pred hcCHHHHHHHHHHHHHHhcC---CCccEEEeeCCCChhhHHHHHHHhCCCeEe--eeccCCCCCceeeeeeeeeccceeE
Q 030139 40 LLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEVISEEYSLEYGKDVM 114 (182)
Q Consensus 40 ~~~~~~~~~~~~~la~~~~~---~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~--~rk~~~~~~~~~~~~~~~~~~~~~~ 114 (182)
+.+++.++..++.||.++.+ .+.++|+|+.+||+++|..+++.|++|... +..++..+... ..+....
T Consensus 2 lis~~~i~~~i~~lA~~I~~~~~~~~~vvv~i~~GG~~~a~~l~~~L~~~~~v~~i~~~~Y~~~~~-------~~~~~~~ 74 (166)
T TIGR01203 2 LIPEEQIKARIAELAKQITEDYAGKPLVLLCVLKGSFPFFADLIRYIAVPVQVDFMAVSSYGNGMQ-------SSGDVKI 74 (166)
T ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEccCCHHHHHHHHHhcCCCceeeEEEEeeccCCCc-------ccCceEE
Confidence 45777888888888877754 256899999999999999999999987532 32111100000 0011111
Q ss_pred EEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCC
Q 030139 115 EMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 165 (182)
Q Consensus 115 ~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~ 165 (182)
........+|++||||||+++||.|+.++++.|++.|+..+.+++++.++.
T Consensus 75 ~~~~~~~~~gk~vlivDDii~TG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~ 125 (166)
T TIGR01203 75 LKDLDLSIKGKDVLIVEDIVDTGLTLQYLLDLLKARKPKSLKIVTLLDKPS 125 (166)
T ss_pred ecCCCCCCCCCEEEEEeeeeCcHHHHHHHHHHHHHCCCCEEEEEEEEecCc
Confidence 111123478999999999999999999999999999999999999999863
No 29
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=99.71 E-value=2.9e-16 Score=122.40 Aligned_cols=120 Identities=22% Similarity=0.304 Sum_probs=91.1
Q ss_pred hhhhcCHHHHHHHHHHHHHHhcC---CCccEEEeeCCCChhhHHHHHHHhCC---CeE--eeeccCCCCCceeeeeeeee
Q 030139 37 TTLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGA---KFV--PMRKPKKLPGEVISEEYSLE 108 (182)
Q Consensus 37 ~~l~~~~~~~~~~~~~la~~~~~---~~~d~Iv~v~~~G~~~a~~la~~l~v---p~~--~~rk~~~~~~~~~~~~~~~~ 108 (182)
..++.+++.++...+.||.++.+ .+.++|+|+..||+++|..+++.+++ |+. +++..+...+ .
T Consensus 8 ~~~lis~~~I~~~i~~lA~~I~~~~~~~~~vivgi~~Gg~~fa~~L~~~L~~~~~~~~i~fi~~~sy~~~---------~ 78 (189)
T PLN02238 8 EKVLWTAEDISARVAELAAQIASDYAGKSPVVLGVATGAFMFLADLVRAIQPLPRGLTVDFIRASSYGGG---------T 78 (189)
T ss_pred cEEEcCHHHHHHHHHHHHHHHHHHcCCCCcEEEEEccCCHHHHHHHHHHhCccCCCeEEEEEEeeecCCC---------c
Confidence 35677888888888888887754 25689999999999999999999998 653 3443321100 0
Q ss_pred ccceeEEEEc---cccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCC
Q 030139 109 YGKDVMEMHV---GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 165 (182)
Q Consensus 109 ~~~~~~~l~~---~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~ 165 (182)
...+...+.. ....+|++||||||++|||.||.++++.|++.|++.+.++|++++..
T Consensus 79 ~~~g~~~i~~~~~~~~v~gk~VliVDDIidTG~Tl~~~~~~l~~~g~~~v~~avL~dK~~ 138 (189)
T PLN02238 79 ESSGVAKVSGADLKIDVKGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVSVCALLDKRA 138 (189)
T ss_pred cccCceeEecCCCCCCCCCCEEEEEecccchHHHHHHHHHHHHhCCCCEEEEEEEEECCc
Confidence 0111222222 23479999999999999999999999999999999999999999863
No 30
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.69 E-value=2.6e-16 Score=129.84 Aligned_cols=117 Identities=25% Similarity=0.332 Sum_probs=90.7
Q ss_pred HHHHHHHhcC-CCccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEE-ccccCCCCeE
Q 030139 50 IDLFVERYKD-KNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMH-VGAVQAGERA 127 (182)
Q Consensus 50 ~~~la~~~~~-~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~gk~V 127 (182)
+..+++++.. .+.++|++++.||+++|..+|+.+++|+.+++|.+..+.. ..+. .....+|++|
T Consensus 142 ~~~la~~i~~~~~~~vvv~pd~Ga~~~a~~lA~~l~~~~~~i~k~r~~~~~--------------~~~~~~~~~v~Gk~V 207 (285)
T PRK00934 142 APLIAEYIGDKLDDPLVLAPDKGALELAKEAAEILGCEYDYLEKTRISPTE--------------VEIAPKNLDVKGKDV 207 (285)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHHHhCCCEEEEEEEecCCCe--------------EEEeccccccCCCEE
Confidence 3444444432 3445999999999999999999999999888776532111 1111 1224789999
Q ss_pred EEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCcccccccCCCCcccc
Q 030139 128 LIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVL 180 (182)
Q Consensus 128 llVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~~~~~~l 180 (182)
+||||+++||+|+.++++.|++.||+.+.++++|..+..++.+++.+.++..+
T Consensus 208 lIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~~H~i~~~~a~~~l~~~~i~~i 260 (285)
T PRK00934 208 LIVDDIISTGGTMATAIKILKEQGAKKVYVACVHPVLVGDAILKLYNAGVDEI 260 (285)
T ss_pred EEEcCccccHHHHHHHHHHHHHCCCCEEEEEEEeeccCcHHHHHHHhCCCCEE
Confidence 99999999999999999999999999999999999888788888877665443
No 31
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.68 E-value=5.6e-16 Score=129.67 Aligned_cols=109 Identities=17% Similarity=0.258 Sum_probs=87.3
Q ss_pred CccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCchHHH
Q 030139 61 NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTL 140 (182)
Q Consensus 61 ~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl 140 (182)
+..+||+|+.||..+|..+|+.+|+|+.+.+|++...... ....+.+ ....+|++|+||||++|||+|+
T Consensus 165 ~~~vvVsPd~G~~~~A~~lA~~lg~~~~~~~k~r~~~~~~---------~~~~~~~--~gdv~Gr~viIVDDIidTG~Tl 233 (320)
T PRK02269 165 DDVVVVSPDHGGVTRARKLAQFLKTPIAIIDKRRSVDKMN---------TSEVMNI--IGNVKGKKCILIDDMIDTAGTI 233 (320)
T ss_pred CCcEEEEECccHHHHHHHHHHHhCCCEEEEEecccCCCCc---------eeEEEEe--ccccCCCEEEEEeeecCcHHHH
Confidence 4469999999999999999999999998877754311000 0011122 1237899999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEEEEecCCcccccccCCCCcccc
Q 030139 141 SAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVL 180 (182)
Q Consensus 141 ~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~~~~~~l 180 (182)
.++++.|++.||+.|.++|.|..+..++.+++.+.++..+
T Consensus 234 ~~aa~~Lk~~GA~~V~~~~tHglf~~~a~~~l~~~~i~~i 273 (320)
T PRK02269 234 CHAADALAEAGATEVYASCTHPVLSGPALDNIQKSAIEKL 273 (320)
T ss_pred HHHHHHHHHCCCCEEEEEEECcccCchHHHHHHhCCCCEE
Confidence 9999999999999999999999998888888877666554
No 32
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=99.68 E-value=9.2e-16 Score=116.13 Aligned_cols=111 Identities=21% Similarity=0.275 Sum_probs=85.0
Q ss_pred hhcCHHHHHHHHHHHHHHhcCC-CccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEE
Q 030139 39 LLLDTKAFRDTIDLFVERYKDK-NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMH 117 (182)
Q Consensus 39 l~~~~~~~~~~~~~la~~~~~~-~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~ 117 (182)
++.+++.++..++.|+.++.+. ++|+|+|+++||+.+|..++++|++|+....+- ..|..+ ..+.+.+.
T Consensus 8 ~~is~~~i~~~i~~la~~I~~~~~~d~vvgv~~GG~~fa~~L~~~L~~~~v~~i~~---------ssY~~~-~~~~~~~~ 77 (156)
T PRK09177 8 FPVSWDQLHRDARALAWRLLPAGQWKGIIAVTRGGLVPAAILARELGIRLVDTVCI---------SSYDHD-NQGELKVL 77 (156)
T ss_pred EEcCHHHHHHHHHHHHHHHHhhCCCCEEEEEecCCeehHHHHHHHcCCCceeEEEE---------EEECCC-cCCcEEEe
Confidence 4568899999999999998753 589999999999999999999999996422111 112111 12233333
Q ss_pred ccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecC
Q 030139 118 VGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELP 164 (182)
Q Consensus 118 ~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~ 164 (182)
.+...+|++||||||+++||.|+.++.+.+.+ +.+++++.++
T Consensus 78 ~~~~~~gk~VLIVDDIiDTG~Tl~~v~~~l~~-----v~~a~l~~K~ 119 (156)
T PRK09177 78 KRAEGDGEGFLVVDDLVDTGGTARAVREMYPK-----AHFATVYAKP 119 (156)
T ss_pred cCCCcCcCEEEEEeeeeCCHHHHHHHHHHHhh-----CCEEEEEECc
Confidence 34457899999999999999999999999974 6788888886
No 33
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.67 E-value=4.5e-16 Score=135.43 Aligned_cols=135 Identities=14% Similarity=0.153 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCe--EeeeccCCCCCceeeeeeeeeccceeEEEEc-cc
Q 030139 44 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKF--VPMRKPKKLPGEVISEEYSLEYGKDVMEMHV-GA 120 (182)
Q Consensus 44 ~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~--~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 120 (182)
+....+++.|++.+.. +.|+|+++|.+|+++|..+|+.+|+|+ ...||++. .........+.......+.+.. ..
T Consensus 259 ~~R~~~G~~La~~~~~-~~d~Vv~vPd~g~~~A~~~A~~lgip~~~~l~rk~~~-~r~~i~~~qr~rn~~~~~~~~~~~~ 336 (445)
T PRK08525 259 EVRKKMGEELAKKFPI-KADFVVPVPDSGVPAAIGYAQESGIPFEMAIVRNHYV-GRTFIEPTQEMRNLKVKLKLNPMSK 336 (445)
T ss_pred HHHHHHHHHHHHHhcc-cCCeEEECCchHHHHHHHHHHHhCCCccceEEEeecc-ccccCCHHHHHHhhheeEEeccccc
Confidence 4566889999988753 678999999999999999999999998 44554421 1111110000001112233222 23
Q ss_pred cCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCcccccccCCCCcccc
Q 030139 121 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVL 180 (182)
Q Consensus 121 ~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~~~~~~l 180 (182)
.++||+|+||||++|||+||.++++.|+++||+.|++.+.|.....+....++..+...|
T Consensus 337 ~v~gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~hp~~~~~~~~~i~~~~~~~l 396 (445)
T PRK08525 337 VLEGKRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLRIACPEIKFPCYYGIDTPTFEEL 396 (445)
T ss_pred ccCCCeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEEEECCCcCCchhhhCcCCChhhE
Confidence 378999999999999999999999999999999999999999887787777766555444
No 34
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.67 E-value=1.3e-15 Score=117.61 Aligned_cols=119 Identities=15% Similarity=0.231 Sum_probs=89.2
Q ss_pred hhhcCHHHHHHHHHHHHHHhcC-----CCccEEEeeCCCChhhHHHHHHHhCCCeE--eeeccCCCCCceeeeeeeeecc
Q 030139 38 TLLLDTKAFRDTIDLFVERYKD-----KNISVVAGIEARGFIFGPPIALAIGAKFV--PMRKPKKLPGEVISEEYSLEYG 110 (182)
Q Consensus 38 ~l~~~~~~~~~~~~~la~~~~~-----~~~d~Iv~v~~~G~~~a~~la~~l~vp~~--~~rk~~~~~~~~~~~~~~~~~~ 110 (182)
.++.+.+.++...+.||.++.+ ....+++|+.+||+.+|..+++.++.|+. +++..+...+. ..
T Consensus 6 ~~l~~~~~i~~~i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~~ssY~~~~---------~~ 76 (178)
T PRK15423 6 EVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTASSYGSGM---------ST 76 (178)
T ss_pred EEecCHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhCCCcceeEEEEEEecCCC---------cc
Confidence 4566788888888888776643 12479999999999999999999999853 44433221110 00
Q ss_pred ceeEEEEc--cccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCC
Q 030139 111 KDVMEMHV--GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 165 (182)
Q Consensus 111 ~~~~~l~~--~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~ 165 (182)
.+...+.. ....+||+||||||+++||.||.++.+.|++.|++.+.++++++++.
T Consensus 77 ~~~v~i~~~~~~~v~gk~VLlVDDIiDTG~TL~~l~~~l~~~~~~~v~~avL~~K~~ 133 (178)
T PRK15423 77 TRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPS 133 (178)
T ss_pred cCceEEecCCCCCCCCCEEEEEeeecCchHHHHHHHHHHHhCCCCEEEEEEEEECCC
Confidence 11222222 23578999999999999999999999999999999999999999973
No 35
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=99.66 E-value=2.4e-16 Score=125.87 Aligned_cols=120 Identities=20% Similarity=0.240 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHHhc--CCCccEEEeeC-------CCChhhHHHHHHHhCC----CeEeeeccCCCCCceeeeeeeee
Q 030139 42 DTKAFRDTIDLFVERYK--DKNISVVAGIE-------ARGFIFGPPIALAIGA----KFVPMRKPKKLPGEVISEEYSLE 108 (182)
Q Consensus 42 ~~~~~~~~~~~la~~~~--~~~~d~Iv~v~-------~~G~~~a~~la~~l~v----p~~~~rk~~~~~~~~~~~~~~~~ 108 (182)
+....+.+++.|+..+. ..++|.||+|| .+||+++..+|+.++. |+...+.+.+.++...+..-+..
T Consensus 90 ~~~l~~~la~~l~~~~~~~~~~~~~iVpVPls~~r~~~RGFNQ~~~la~~l~~~~~~~~~~~r~k~~~~q~~l~~~~rr~ 169 (225)
T COG1040 90 DLDLAKLLARLLAKALDDFLEKPDLIVPVPLSPSRLLERGFNQSELLARALARRLGKPIALRRVKDTSPQQGLKALERRR 169 (225)
T ss_pred chhHHHHHHHHHHHHHhhccccCCeEEEecCCHHHHHHcCCCHHHHHHHHHHHHhCchHHHHHHhccccccccchHHHHH
Confidence 46677778888887776 35799999999 6899999999998854 44333333332322222111111
Q ss_pred ccceeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEe
Q 030139 109 YGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 162 (182)
Q Consensus 109 ~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~ 162 (182)
..++.|.+..+. ...++|+|||||+|||+|+.++.+.|++.|++.|.++++..
T Consensus 170 nl~~aF~~~~~~-~~~~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~~lar 222 (225)
T COG1040 170 NLKGAFRLKKGI-EEPKNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLTLAR 222 (225)
T ss_pred hccCCeecCCCC-CCCCeEEEEecccccHHHHHHHHHHHHHcCCceEEEEEEEe
Confidence 223456554332 22389999999999999999999999999999999998865
No 36
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.65 E-value=2.3e-15 Score=125.81 Aligned_cols=107 Identities=22% Similarity=0.251 Sum_probs=87.4
Q ss_pred CccEEEeeCCCChhhHHHHHHHhC-CCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCchHH
Q 030139 61 NISVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGT 139 (182)
Q Consensus 61 ~~d~Iv~v~~~G~~~a~~la~~l~-vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~T 139 (182)
+..+||+|+.||..+|..+|+.++ .|+.++.|.+..... ...+.+ ...++||+|+||||+++||+|
T Consensus 166 ~~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~-----------~~~~~~--~gdv~Gr~viIVDDIidTG~T 232 (319)
T PRK04923 166 DNLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANV-----------ATVMNI--IGDVQGKTCVLVDDLVDTAGT 232 (319)
T ss_pred CCCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCc-----------eEEEec--ccCCCCCEEEEEecccCchHH
Confidence 445999999999999999999998 899988876642110 011111 134799999999999999999
Q ss_pred HHHHHHHHHhcCCeEEEEEEEEecCCcccccccCCCCcccc
Q 030139 140 LSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVL 180 (182)
Q Consensus 140 l~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~~~~~~l 180 (182)
+.++++.|++.||..|.++|.|..+..++.+++.+.++..+
T Consensus 233 l~~aa~~Lk~~GA~~V~~~~THgvfs~~a~~~l~~s~i~~i 273 (319)
T PRK04923 233 LCAAAAALKQRGALKVVAYITHPVLSGPAVDNINNSQLDEL 273 (319)
T ss_pred HHHHHHHHHHCCCCEEEEEEECcccCchHHHHHhhCCCCEE
Confidence 99999999999999999999999998888888877665544
No 37
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=99.64 E-value=7.7e-16 Score=120.01 Aligned_cols=118 Identities=19% Similarity=0.253 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHHHHhcC---CCccEEEeeC-------CCChhhHHHHHHHhCCC---eE--eeeccCCCCCceeeeeee
Q 030139 42 DTKAFRDTIDLFVERYKD---KNISVVAGIE-------ARGFIFGPPIALAIGAK---FV--PMRKPKKLPGEVISEEYS 106 (182)
Q Consensus 42 ~~~~~~~~~~~la~~~~~---~~~d~Iv~v~-------~~G~~~a~~la~~l~vp---~~--~~rk~~~~~~~~~~~~~~ 106 (182)
+....+.++..|+..+.. ..+|.|++|| .+||+++..+|+.++.. +. ..+.+. .++...+...+
T Consensus 57 ~~~l~~~l~~~l~~~~~~~~~~~~~~ivpVP~~~~r~~~RGfnq~~~la~~l~~~~~~~~~~l~r~~~-~~Q~~l~~~~R 135 (190)
T TIGR00201 57 QAEIIRALASLLSLTVSKAYRDLPDVIVPVPLSKEREWRRGFNQADLLAQCLSRWLFNYHNIVIRLNN-ETQSKLKATLR 135 (190)
T ss_pred ChHHHHHHHHHHHHHHHhhccCCCCEEEeCCCCHHHHHHhCCCHHHHHHHHHHHHhCCCcceEEEecc-cccccCCHHHH
Confidence 566777788877765543 2368999999 59998888887776422 11 122222 22211111111
Q ss_pred eeccceeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEE
Q 030139 107 LEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 161 (182)
Q Consensus 107 ~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~ 161 (182)
....++.|.+... ..+|++|||||||+|||+|+.++.+.|++.|+..|.++++.
T Consensus 136 ~~n~~~~f~~~~~-~~~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~~la 189 (190)
T TIGR00201 136 FLNLENAFDLKNN-SFQGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVWTLA 189 (190)
T ss_pred HHHHhCcEEccCC-CCCCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 1112344555322 46799999999999999999999999999999999998874
No 38
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=99.64 E-value=1.8e-15 Score=124.73 Aligned_cols=105 Identities=25% Similarity=0.317 Sum_probs=85.4
Q ss_pred cEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCchHHHHH
Q 030139 63 SVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSA 142 (182)
Q Consensus 63 d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~ 142 (182)
.+||+|+.||...|..+|+.||.|+.++.|+|. +..... ....+ ...++||+|+||||+++||+|+..
T Consensus 165 ~vVVSPD~Ggv~RAr~~A~~L~~~~a~i~K~R~-~~~~~v---------~~~~~--~gdV~gk~~iiVDDiIdTgGTi~~ 232 (314)
T COG0462 165 PVVVSPDKGGVKRARALADRLGAPLAIIDKRRD-SSPNVV---------EVMNL--IGDVEGKDVVIVDDIIDTGGTIAK 232 (314)
T ss_pred cEEECCCccHHHHHHHHHHHhCCCEEEEEEeec-CCCCeE---------EEeec--ccccCCCEEEEEeccccccHHHHH
Confidence 699999999999999999999999988888763 111000 00111 234899999999999999999999
Q ss_pred HHHHHHhcCCeEEEEEEEEecCCcccccccCCCCccc
Q 030139 143 AIRLLERVGVHVVECACVIELPELKGRERLGEKPLFV 179 (182)
Q Consensus 143 ~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~~~~~~ 179 (182)
++++|++.||+.|.++|.|..+.+.+.+++....+..
T Consensus 233 Aa~~Lk~~GAk~V~a~~tH~vfs~~a~~~l~~~~i~~ 269 (314)
T COG0462 233 AAKALKERGAKKVYAAATHGVFSGAALERLEASAIDE 269 (314)
T ss_pred HHHHHHHCCCCeEEEEEEchhhChHHHHHHhcCCCCE
Confidence 9999999999999999999999877788877654443
No 39
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.64 E-value=3e-15 Score=124.78 Aligned_cols=105 Identities=21% Similarity=0.264 Sum_probs=85.5
Q ss_pred CCccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCchHH
Q 030139 60 KNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGT 139 (182)
Q Consensus 60 ~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~T 139 (182)
.+..+|++++.||+.+|..+|+.+|+|+.+++|.++.++. ...+.+ ....+|++|+||||+++||+|
T Consensus 157 ~~~~vvv~pd~Gg~~~A~~la~~Lg~~~~~~~k~r~~~~~-----------~~~~~~--~~~~~g~~vliVDDii~TG~T 223 (309)
T PRK01259 157 LENLVVVSPDVGGVVRARALAKRLDADLAIIDKRRPRANV-----------SEVMNI--IGDVEGRDCILVDDMIDTAGT 223 (309)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHhCCCEEEEEeeccccee-----------EEEEee--cccCCCCEEEEEecccCcHHH
Confidence 4667999999999999999999999999888766532111 011122 123789999999999999999
Q ss_pred HHHHHHHHHhcCCeEEEEEEEEecCCcccccccCCCCc
Q 030139 140 LSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPL 177 (182)
Q Consensus 140 l~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~~~~ 177 (182)
+.++++.|++.|++.+.++++|..+..++.+++.+.++
T Consensus 224 ~~~a~~~l~~~Ga~~v~~~~tH~i~~~~a~~~l~~~~~ 261 (309)
T PRK01259 224 LCKAAEALKERGAKSVYAYATHPVLSGGAIERIENSVI 261 (309)
T ss_pred HHHHHHHHHccCCCEEEEEEEeeeCChHHHHHHhcCCC
Confidence 99999999999999999999999988888888766443
No 40
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.63 E-value=3.5e-15 Score=124.95 Aligned_cols=107 Identities=20% Similarity=0.233 Sum_probs=86.9
Q ss_pred CccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCchHHH
Q 030139 61 NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTL 140 (182)
Q Consensus 61 ~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl 140 (182)
+..+||+|+.||..+|..+|+.+++|+.++++.+.... ... ..+ ...++|++|+||||+++||+|+
T Consensus 169 ~~~vvV~pd~Ga~~~A~~la~~L~~~~~~~~~~r~~~~-----------~~~-~~i--~gdV~gk~viIVDDIidTG~Tl 234 (323)
T PRK02458 169 SDVVVVSPKNSGIKRARSLAEYLDAPIAIIDYAQDDSE-----------REE-GYI--IGDVAGKKAILIDDILNTGKTF 234 (323)
T ss_pred CceEEEEECCChHHHHHHHHHHhCCCEEEEEEecCCCc-----------cee-ecc--ccccCCCEEEEEcceeCcHHHH
Confidence 34599999999999999999999999987765442110 000 011 1347999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEEEEecCCcccccccCCCCccccc
Q 030139 141 SAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 181 (182)
Q Consensus 141 ~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~~~~~~l~ 181 (182)
.++++.|++.||..|.++|.|..+..++.++|.+.++..++
T Consensus 235 ~~aa~~Lk~~GA~~V~~~~tHgif~~~a~~~l~~s~i~~iv 275 (323)
T PRK02458 235 AEAAKIVEREGATEIYAVASHGLFAGGAAEVLENAPIKEIL 275 (323)
T ss_pred HHHHHHHHhCCCCcEEEEEEChhcCchHHHHHhhCCCCEEE
Confidence 99999999999999999999999988888888887766553
No 41
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.62 E-value=6.6e-15 Score=113.50 Aligned_cols=120 Identities=22% Similarity=0.301 Sum_probs=86.1
Q ss_pred hhhcCHHHHHHHHHHHHHHhcC----CCccEEEeeCCCChhhHHHHHHHh----CCCe--EeeeccCCCCCceeeeeeee
Q 030139 38 TLLLDTKAFRDTIDLFVERYKD----KNISVVAGIEARGFIFGPPIALAI----GAKF--VPMRKPKKLPGEVISEEYSL 107 (182)
Q Consensus 38 ~l~~~~~~~~~~~~~la~~~~~----~~~d~Iv~v~~~G~~~a~~la~~l----~vp~--~~~rk~~~~~~~~~~~~~~~ 107 (182)
..+.+++.++..++.|+.++.+ .+.++|+|+.+||+++|..+++.+ ++|+ ..++..+...+. .
T Consensus 4 ~~l~s~~~i~~~i~~la~~i~~~~~~~~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~------~- 76 (176)
T PRK05205 4 KEILDAEALRRALTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDL------T- 76 (176)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCc------c-
Confidence 3567889999999999987754 257899999999999999999999 5443 333221110000 0
Q ss_pred ecccee-EE-EEccccCCCCeEEEEecccCchHHHHHHHHHHHhcC-CeEEEEEEEEecC
Q 030139 108 EYGKDV-ME-MHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVG-VHVVECACVIELP 164 (182)
Q Consensus 108 ~~~~~~-~~-l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~g-a~~v~v~~l~~~~ 164 (182)
..+... .. .......+|++||||||+++||+||.++++.|++.| ++.+.+++++++.
T Consensus 77 ~~~~~~~~~~~~l~~~v~gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~~avL~~K~ 136 (176)
T PRK05205 77 KKGLHPQVKPTDIPFDIEGKRVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVLVDRG 136 (176)
T ss_pred ccCcccccccccCCCCCCCCEEEEEecccCcHHHHHHHHHHHHhcCCCcEEEEEEEEECC
Confidence 000000 10 001224789999999999999999999999999998 7899999999973
No 42
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.62 E-value=1.3e-14 Score=114.68 Aligned_cols=120 Identities=14% Similarity=0.173 Sum_probs=89.6
Q ss_pred chhhhcCHHHHHHHHHHHHHHhcC-C--------CccEEEeeCCCChhhHHHHHHHhC---CCeEe--eeccCCCCCcee
Q 030139 36 ITTLLLDTKAFRDTIDLFVERYKD-K--------NISVVAGIEARGFIFGPPIALAIG---AKFVP--MRKPKKLPGEVI 101 (182)
Q Consensus 36 ~~~l~~~~~~~~~~~~~la~~~~~-~--------~~d~Iv~v~~~G~~~a~~la~~l~---vp~~~--~rk~~~~~~~~~ 101 (182)
...++.+++.++...+.||.++.+ + ++++++|+.+||+++|..|+++|+ +|+.. ++-.
T Consensus 23 ~~~~lis~e~I~~~i~~LA~~I~~~~~~~~~~~~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~vs-------- 94 (211)
T PTZ00271 23 SAHTLVTQEQVWAATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICAS-------- 94 (211)
T ss_pred cccEecCHHHHHHHHHHHHHHHHHHhhhccccCCCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEEE--------
Confidence 345677899888888888877654 2 367899999999999999999996 66422 2211
Q ss_pred eeeeee-eccceeEEEEc--cccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCC
Q 030139 102 SEEYSL-EYGKDVMEMHV--GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 165 (182)
Q Consensus 102 ~~~~~~-~~~~~~~~l~~--~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~ 165 (182)
+|.. ....+.+.+.. ...++||+|||||||++||.||.++++.|++.+++.+.++++++++.
T Consensus 95 --sY~~~~~s~g~~~i~~~~~~~i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p~svk~avL~dK~~ 159 (211)
T PTZ00271 95 --SYGTGVETSGQVRMLLDVRDSVENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDKPS 159 (211)
T ss_pred --ecCCCCcccCceEEecCCCCCCCCCEEEEEecccCCHHHHHHHHHHHHhcCCCEEEEEEEEEccc
Confidence 2211 11112222222 23588999999999999999999999999999999999999999963
No 43
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.61 E-value=1.1e-14 Score=122.44 Aligned_cols=101 Identities=22% Similarity=0.220 Sum_probs=83.8
Q ss_pred CccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCchHHH
Q 030139 61 NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTL 140 (182)
Q Consensus 61 ~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl 140 (182)
+..+||+++.||..+|..+|+.+|.|+.+++|++.... ....+.+. ...+|++|+||||+++||+|+
T Consensus 168 ~~~vvVsPD~gg~~rA~~lA~~lg~~~~vi~K~r~~~~-----------~~~~~~~~--gdv~Gk~VIIVDDIi~TG~Tl 234 (332)
T PRK00553 168 KDLVVVSPDYGGVKRARLIAESLELPLAIIDKRRPKHN-----------VAESINVL--GEVKNKNCLIVDDMIDTGGTV 234 (332)
T ss_pred CCeEEEEECCCcHHHHHHHHHHhCCCEEEEEEecCCcc-----------eEeeEEee--ccCCCCEEEEEeccccchHHH
Confidence 44599999999999999999999999998887653211 01112221 247899999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEEEEecCCcccccccCC
Q 030139 141 SAAIRLLERVGVHVVECACVIELPELKGRERLGE 174 (182)
Q Consensus 141 ~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~ 174 (182)
.++++.|++.||..+.++|.|..+..++.+++.+
T Consensus 235 ~~aa~~Lk~~GA~~V~~~atHglf~~~a~~~l~~ 268 (332)
T PRK00553 235 IAAAKLLKKQKAKKVCVMATHGLFNKNAIQLFDE 268 (332)
T ss_pred HHHHHHHHHcCCcEEEEEEEeeecCchHHHHHHh
Confidence 9999999999999999999999998888888754
No 44
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.61 E-value=5.8e-15 Score=122.79 Aligned_cols=109 Identities=23% Similarity=0.234 Sum_probs=86.1
Q ss_pred CccEEEeeCCCChhhHHHHHHHhC-CCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCchHH
Q 030139 61 NISVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGT 139 (182)
Q Consensus 61 ~~d~Iv~v~~~G~~~a~~la~~l~-vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~T 139 (182)
+..+||+|+.||+.+|..+|+.++ .|+.+++|.+..... +... .......++|++|+||||+++||+|
T Consensus 148 ~~~vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R~~~~~----------~~~~-~~~~~~dv~gr~viIVDDIi~TG~T 216 (304)
T PRK03092 148 DNVTVVSPDAGRVRVAEQWADRLGGAPLAFIHKTRDPTVP----------NQVV-ANRVVGDVEGRTCVLVDDMIDTGGT 216 (304)
T ss_pred CCcEEEEecCchHHHHHHHHHHcCCCCEEEEEEEcccCCC----------CceE-EEecCcCCCCCEEEEEccccCcHHH
Confidence 345999999999999999999999 999888776531100 0001 1111234789999999999999999
Q ss_pred HHHHHHHHHhcCCeEEEEEEEEecCCcccccccCCCCcccc
Q 030139 140 LSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVL 180 (182)
Q Consensus 140 l~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~~~~~~l 180 (182)
+.++++.|++.|+..+.++++|..+..++.+++.+.++..+
T Consensus 217 l~~aa~~Lk~~Ga~~I~~~~tH~v~~~~a~~~l~~~~~~~i 257 (304)
T PRK03092 217 IAGAVRALKEAGAKDVIIAATHGVLSGPAAERLKNCGAREV 257 (304)
T ss_pred HHHHHHHHHhcCCCeEEEEEEcccCChHHHHHHHHCCCCEE
Confidence 99999999999999999999999988788888877665443
No 45
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.58 E-value=2.1e-14 Score=122.38 Aligned_cols=105 Identities=21% Similarity=0.315 Sum_probs=83.5
Q ss_pred CccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeecccee-EEEE-ccccCCCCeEEEEecccCchH
Q 030139 61 NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDV-MEMH-VGAVQAGERALIVDDLVATGG 138 (182)
Q Consensus 61 ~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~-~~l~-~~~~~~gk~VllVDDvitTG~ 138 (182)
+..+||+|+.||..+|..+|..+|.|+.+++|.+...... .+.+. .... .+..++|++|+||||+++||+
T Consensus 207 ~~~VVVsPD~Gg~~rA~~~A~~Lg~~~ai~~K~R~~~~~~--------~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~ 278 (382)
T PRK06827 207 DHLMVISPDTGAMDRAKYYASVLGVDLGLFYKRRDYSRVV--------NGRNPIVAHEFLGRDVEGKDVLIVDDMIASGG 278 (382)
T ss_pred CCcEEEEECccchHHHHHHHHHhCCCEEEEEcccCCcccc--------cCCCceEEEecCCcccCCCEEEEEeCCcCcHH
Confidence 4579999999999999999999999999998876321100 01111 1111 122578999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEEEEEecCCcccccccCC
Q 030139 139 TLSAAIRLLERVGVHVVECACVIELPELKGRERLGE 174 (182)
Q Consensus 139 Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~ 174 (182)
|+..+++.|++.||+.+.++++|..+. ++.+++.+
T Consensus 279 Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~ 313 (382)
T PRK06827 279 SMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDK 313 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHh
Confidence 999999999999999999999999977 88887753
No 46
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.58 E-value=5.4e-14 Score=106.66 Aligned_cols=122 Identities=22% Similarity=0.323 Sum_probs=93.3
Q ss_pred chhhhcCHHHHHHHHHHHHHHhcC---CCccEEEeeCCCChhhHHHHHHHhCCCeEe--eeccCCCCCceeeeeeeee-c
Q 030139 36 ITTLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEVISEEYSLE-Y 109 (182)
Q Consensus 36 ~~~l~~~~~~~~~~~~~la~~~~~---~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~--~rk~~~~~~~~~~~~~~~~-~ 109 (182)
...++.+.+.++.-++.||+++.+ .+..++||+..|+++|+..+.+++++|..+ +... +|..+ .
T Consensus 7 ~~evLisee~I~~ri~ela~~I~~~y~g~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vS----------SYg~~t~ 76 (178)
T COG0634 7 IKEVLISEEQIKARIKELAAQITEDYGGKDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVS----------SYGGGTS 76 (178)
T ss_pred cceEeeCHHHHHHHHHHHHHHHHHhhCCCceEEEEEcccchhhHHHHHHhcCCCceeEEEEEe----------ccCCCcc
Confidence 344677888888888888877764 256799999999999999999999988643 2211 12111 1
Q ss_pred cceeEEEEc--cccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCcc
Q 030139 110 GKDVMEMHV--GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELK 167 (182)
Q Consensus 110 ~~~~~~l~~--~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~ 167 (182)
+.+...+.. +..++||+||||||+++||.||..+.++|+..||+.+.++++++++..+
T Consensus 77 ssg~v~i~kDld~di~grdVLiVeDIiDsG~TLs~i~~~l~~r~a~sv~i~tLldK~~~r 136 (178)
T COG0634 77 SSGEVKILKDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATLLDKPERR 136 (178)
T ss_pred cCCceEEecccccCCCCCeEEEEecccccChhHHHHHHHHHhCCCCeEEEEEEeeCcccc
Confidence 122233332 3558999999999999999999999999999999999999999998543
No 47
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=99.58 E-value=1.8e-14 Score=120.13 Aligned_cols=106 Identities=24% Similarity=0.279 Sum_probs=84.3
Q ss_pred CccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCchHHH
Q 030139 61 NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTL 140 (182)
Q Consensus 61 ~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl 140 (182)
+.++|++++.+|+.+|..+|+.+|+|+..++|.+..+. +... ........+|++|+||||+++||+|+
T Consensus 159 ~~~viv~pd~g~~~~A~~lA~~Lg~~~~~i~k~r~~~~-----------~~~~-~~~~~~~v~g~~vliVDDii~tG~Tl 226 (308)
T TIGR01251 159 DNPVVVSPDAGGVERAKKVADALGCPLAIIDKRRISAT-----------NEVE-VMNLVGDVEGKDVVIVDDIIDTGGTI 226 (308)
T ss_pred CCCEEEEECCchHHHHHHHHHHhCCCEEEEEEEecCCC-----------CEEE-EEecccccCCCEEEEEccccCCHHHH
Confidence 46799999999999999999999999998877653111 0000 00112347899999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEEEEecCCcccccccCCCCcc
Q 030139 141 SAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLF 178 (182)
Q Consensus 141 ~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~~~~~ 178 (182)
..+++.|++.|++.+.+++.|.....++.+++.+.++.
T Consensus 227 ~~a~~~l~~~ga~~v~~~~th~v~~~~a~~~l~~~~~~ 264 (308)
T TIGR01251 227 AKAAEILKSAGAKRVIAAATHGVFSGPAIERIANAGVE 264 (308)
T ss_pred HHHHHHHHhcCCCEEEEEEEeeecCcHHHHHHHhCCCC
Confidence 99999999999999999999987777777777765543
No 48
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.57 E-value=1.7e-14 Score=126.28 Aligned_cols=127 Identities=17% Similarity=0.174 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEee-eccCCCCCce-eeeeeeeeccceeEEEEc-ccc
Q 030139 45 AFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPM-RKPKKLPGEV-ISEEYSLEYGKDVMEMHV-GAV 121 (182)
Q Consensus 45 ~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~-rk~~~~~~~~-~~~~~~~~~~~~~~~l~~-~~~ 121 (182)
....+++.|++... .+.|+|+++|.+|.++|..+|+.+|+|+... .+.+ ..+.+ .............+.+.. ...
T Consensus 273 ~R~~~G~~La~~~~-~~~D~Vv~vPdsg~~~A~~~A~~lgip~~~~l~r~~-~~~rtfi~~~q~~R~~~~~~k~~~~~~~ 350 (469)
T PRK05793 273 SRVRAGRQLYKEYP-VDADIVIGVPDSGIPAAIGYAEASGIPYGIGFIKNK-YVGRTFIAPSQELRERAVRVKLNPLKVN 350 (469)
T ss_pred HHHHHHHHHHHhcC-CCCCEEEEcCccHHHHHHHHHHHhCCCEeeeEEEee-eccccccChhHhhhhhhheEecccCccc
Confidence 44588999998765 3678999999999999999999999999642 2221 11111 100000000011122211 134
Q ss_pred CCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCcccccccC
Q 030139 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG 173 (182)
Q Consensus 122 ~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~ 173 (182)
++||+|+||||+++||+|+.++++.|+++||++|++.+.+.....+....++
T Consensus 351 v~gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~p~~~~p~~~gid 402 (469)
T PRK05793 351 VEGKRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVSSPPVKYPCYFGID 402 (469)
T ss_pred cCCCEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEECCCcCcchhhhcc
Confidence 6899999999999999999999999999999999999999876555544444
No 49
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.56 E-value=6.4e-14 Score=112.56 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=90.5
Q ss_pred chhhhcCHHHHHHHHHHHHHHhcC---CCccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCC---CCcee-eeeeeee
Q 030139 36 ITTLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKL---PGEVI-SEEYSLE 108 (182)
Q Consensus 36 ~~~l~~~~~~~~~~~~~la~~~~~---~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~---~~~~~-~~~~~~~ 108 (182)
+..++.+.+.++...+.||.++.+ .+..+++|+..||+.|+..|.+.++............ ...+. .++|..+
T Consensus 53 ~~~vLis~~~I~~rI~~LA~~I~~dy~~~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~vsSY~~~ 132 (241)
T PTZ00149 53 LTKILLPNGLIKDRVEKLAYDIKQVYGNEELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRVKSYCND 132 (241)
T ss_pred ccEEEeCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEEEEccCC
Confidence 445678889999888888887764 3567999999999999999999986211100000000 00111 1233222
Q ss_pred ccceeEEEEcc--ccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCC
Q 030139 109 YGKDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 165 (182)
Q Consensus 109 ~~~~~~~l~~~--~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~ 165 (182)
...+.+.+... ...+||+||||||+++||.||.++++.|++.|++.+.+++++.++.
T Consensus 133 ~s~g~v~i~~~~~~~l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~~~V~va~L~~K~~ 191 (241)
T PTZ00149 133 ESTGKLEIVSDDLSCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKTIRIATLFEKRT 191 (241)
T ss_pred CcCCceEEecccccccCCCEEEEEEeEeChHHHHHHHHHHHHhcCCCEEEEEEEEecCc
Confidence 22222323221 3479999999999999999999999999999999999999999863
No 50
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.56 E-value=2.3e-14 Score=125.88 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeee-ccceeEEEE-cccc
Q 030139 44 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLE-YGKDVMEMH-VGAV 121 (182)
Q Consensus 44 ~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~-~~~~~~~l~-~~~~ 121 (182)
+....+++.||+... .++|+|+|+|..|+++|..+|+.+|+|+.....+++..+.+..+..... ....++.+. ....
T Consensus 296 ~~R~~~G~~La~~~~-~~~DvVv~VP~sg~~~A~g~A~~lgip~~~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~ 374 (500)
T PRK07349 296 SYRQRLGQQLAKESP-VDADLVIGVPDSGIPAAIGFSQASGIPYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDV 374 (500)
T ss_pred HHHHHHHHHHhhhcc-cCCcEEEEeccccHHHHHHHHHHHCCCchhceEEEeccCccccCCCHHHHHhhhheeeeccccc
Confidence 455688888886543 4789999999999999999999999999642222111211111110000 000112221 1234
Q ss_pred CCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEE
Q 030139 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 160 (182)
Q Consensus 122 ~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l 160 (182)
.+||+|+||||++|||+|+.++++.|+++||++|++..-
T Consensus 375 ~~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i~ 413 (500)
T PRK07349 375 LAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRIS 413 (500)
T ss_pred cCCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEeC
Confidence 689999999999999999999999999999999988643
No 51
>PRK11595 DNA utilization protein GntX; Provisional
Probab=99.55 E-value=4.5e-14 Score=113.01 Aligned_cols=119 Identities=19% Similarity=0.276 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHHHhc------C-CCccEEEeeC-------CCChhhHHHHHH----HhCCCeE---eeeccCCCCCce
Q 030139 42 DTKAFRDTIDLFVERYK------D-KNISVVAGIE-------ARGFIFGPPIAL----AIGAKFV---PMRKPKKLPGEV 100 (182)
Q Consensus 42 ~~~~~~~~~~~la~~~~------~-~~~d~Iv~v~-------~~G~~~a~~la~----~l~vp~~---~~rk~~~~~~~~ 100 (182)
+....+.+++.|++.+. . ..+|.|++|| .+||+++..+|+ .+++|+. ..+.+.+.++..
T Consensus 86 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~d~ivpVPl~~~r~~~RGfnq~~~la~~la~~~~~~~~~~~l~r~~~~~~q~~ 165 (227)
T PRK11595 86 RSELASVLARLLLLEWLQARRSTGLQKPDRIISVPLHQRRHWRRGFNQSDLLCRPLARWLGCDYDSEALTRTRATATQHF 165 (227)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEecCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCcccceEEecCCCCccc
Confidence 56677777777765432 1 2578999998 469987666655 4577763 222222212211
Q ss_pred eeeeeeeeccceeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEe
Q 030139 101 ISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 162 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~ 162 (182)
.+...+.....+.|.+. ...+|++|||||||+|||+|+.++++.|++.|+..|.++++..
T Consensus 166 l~~~~R~~n~~~~f~~~--~~~~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~~la~ 225 (227)
T PRK11595 166 LSARLRKRNLKNAFRLE--LPVQGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVWCLCR 225 (227)
T ss_pred CCHHHHhhhhhhhhccC--CCCCCCEEEEEeeeecchHHHHHHHHHHHHcCCcEEEEEEEEe
Confidence 11111111112234332 2378999999999999999999999999999999999998854
No 52
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=99.54 E-value=8.5e-14 Score=115.71 Aligned_cols=104 Identities=22% Similarity=0.254 Sum_probs=84.1
Q ss_pred cEEEeeCCCChhhHHHHHHHh-CCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCchHHHH
Q 030139 63 SVVAGIEARGFIFGPPIALAI-GAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLS 141 (182)
Q Consensus 63 d~Iv~v~~~G~~~a~~la~~l-~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~ 141 (182)
-+|++++.+|.++|..+++.+ +.|+..++|.+..... ...+.+ ....+|++|+||||+++||+|+.
T Consensus 153 ~vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~-----------~~~~~~--~~~v~g~~viivDDii~TG~Tl~ 219 (302)
T PLN02369 153 LVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNV-----------AEVMNL--IGDVKGKVAIMVDDMIDTAGTIT 219 (302)
T ss_pred eEEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCcce-----------eeeEec--CCCCCCCEEEEEcCcccchHHHH
Confidence 489999999999999999999 7899888876532110 011111 23478999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEEEEEecCCcccccccCCCCccc
Q 030139 142 AAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFV 179 (182)
Q Consensus 142 ~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~~~~~~ 179 (182)
++++.|++.|++.+.++++|.....++.+++.+.++..
T Consensus 220 ~a~~~l~~~Ga~~v~~~~tH~v~~~~a~~~l~~~~~~~ 257 (302)
T PLN02369 220 KGAALLHQEGAREVYACATHAVFSPPAIERLSSGLFQE 257 (302)
T ss_pred HHHHHHHhCCCCEEEEEEEeeeeCHHHHHHHHhCCCCE
Confidence 99999999999999999999988888888887654443
No 53
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.54 E-value=2.2e-14 Score=111.41 Aligned_cols=115 Identities=19% Similarity=0.240 Sum_probs=85.8
Q ss_pred hhcCHHHHHHHHHHHHHHhc--CCCccEEEeeCCCChhhHHHHHHHhCC-CeEeeeccCCCCCceeeeeeeeec-cceeE
Q 030139 39 LLLDTKAFRDTIDLFVERYK--DKNISVVAGIEARGFIFGPPIALAIGA-KFVPMRKPKKLPGEVISEEYSLEY-GKDVM 114 (182)
Q Consensus 39 l~~~~~~~~~~~~~la~~~~--~~~~d~Iv~v~~~G~~~a~~la~~l~v-p~~~~rk~~~~~~~~~~~~~~~~~-~~~~~ 114 (182)
.+.+++.++.+++.||+++. ++++|+|+++.+||+.+|..+|..|++ |+..+...+. .... .....
T Consensus 5 ~~vSw~~I~~~~~~lA~kI~~s~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y----------~~~~~~~~~~ 74 (192)
T COG2236 5 LYVSWEEIHRLCRALAEKIRASGFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHY----------DETAERDGEA 74 (192)
T ss_pred EEecHHHHHHHHHHHHHHHHHcCCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEe----------hhhcccCCcc
Confidence 46688999999999999997 479999999999999999999999998 6655432221 1000 00111
Q ss_pred EEEcc--c-cCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEec
Q 030139 115 EMHVG--A-VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIEL 163 (182)
Q Consensus 115 ~l~~~--~-~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~ 163 (182)
.+... . ...||+||||||+.+||.||..+.+.|++..+..+.++++..+
T Consensus 75 ~v~~~~~~d~l~GkkVLIVDDI~DTG~Tl~~a~~~l~~~~p~e~rta~l~~~ 126 (192)
T COG2236 75 KVKYPITIDPLSGKKVLIVDDIVDTGETLELALEELKKLAPAEVRTAVLQYK 126 (192)
T ss_pred eeecCccccccCCCeEEEEecccCchHhHHHHHHHHHhhCchhhhhhhhhcc
Confidence 22211 1 1689999999999999999999999999977777766655443
No 54
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.54 E-value=6.7e-14 Score=117.48 Aligned_cols=107 Identities=22% Similarity=0.289 Sum_probs=85.7
Q ss_pred CccEEEeeCCCChhhHHHHHHHhC-CCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCchHH
Q 030139 61 NISVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGT 139 (182)
Q Consensus 61 ~~d~Iv~v~~~G~~~a~~la~~l~-vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~T 139 (182)
+..+||+++.||..+|..+|+.++ .|+.++.|++..... ...+.+ ....+|++|+||||+++||+|
T Consensus 179 ~~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~-----------~~~~~~--~~~v~g~~viiVDDii~TG~T 245 (330)
T PRK02812 179 EDIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNV-----------AEVLNV--IGDVKGKTAILVDDMIDTGGT 245 (330)
T ss_pred CCeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCce-----------eeeEec--cccCCCCEEEEEccccCcHHH
Confidence 446999999999999999999995 899888776531110 011111 124789999999999999999
Q ss_pred HHHHHHHHHhcCCeEEEEEEEEecCCcccccccCCCCcccc
Q 030139 140 LSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVL 180 (182)
Q Consensus 140 l~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~~~~~~l 180 (182)
+.++++.|++.|++.+.+++.|..+..++.++|.+.++..+
T Consensus 246 ~~~a~~~L~~~Ga~~v~~~~tH~v~s~~a~~~l~~~~id~i 286 (330)
T PRK02812 246 ICEGARLLRKEGAKQVYACATHAVFSPPAIERLSSGLFEEV 286 (330)
T ss_pred HHHHHHHHhccCCCeEEEEEEcccCChHHHHHHhhCCCCEE
Confidence 99999999999999999999999988888888876554443
No 55
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.53 E-value=7.1e-14 Score=122.56 Aligned_cols=112 Identities=18% Similarity=0.205 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEe--eeccCCCCCceeeeeeeeeccceeEEEEc---
Q 030139 44 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEVISEEYSLEYGKDVMEMHV--- 118 (182)
Q Consensus 44 ~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~--~rk~~~~~~~~~~~~~~~~~~~~~~~l~~--- 118 (182)
+..+.+++.|++..+. ++|+|+|+|.+|+++|..+|+.+++|+.. +|.+.. +.+..+... ......+.+..
T Consensus 279 ~~R~~~g~~La~~~~~-~~D~Vv~VP~sg~~~A~~la~~lgip~~~~lir~~y~--grt~i~~~q-~~r~~~v~~k~~~~ 354 (479)
T PRK09123 279 EVRKNIGRELARESPV-DADVVVPVPDSGVPAAIGYAQESGIPFELGIIRNHYV--GRTFIQPTQ-QIRNLGVKLKHNAN 354 (479)
T ss_pred HHHHHHHHHHHHhCCC-CCeEEEEcCccHHHHHHHHHHhcCCCeeheEEEEeec--Ccccccccc-ccccccEEEEeccc
Confidence 5666888888877653 78999999999999999999999999963 443221 111111000 00111222221
Q ss_pred cccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEE
Q 030139 119 GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECAC 159 (182)
Q Consensus 119 ~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~ 159 (182)
....+||+|+||||+++||+|+.++++.|+++||+.|++.+
T Consensus 355 ~~~~~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~~ 395 (479)
T PRK09123 355 RAVIEGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRI 395 (479)
T ss_pred ccccCCCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEEE
Confidence 23478999999999999999999999999999999999987
No 56
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=99.53 E-value=7e-14 Score=116.89 Aligned_cols=109 Identities=22% Similarity=0.180 Sum_probs=84.2
Q ss_pred HHHHHHHhcC---CCccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCe
Q 030139 50 IDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGER 126 (182)
Q Consensus 50 ~~~la~~~~~---~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~ 126 (182)
...+++++.+ .+..+||+|+.||...+..++ ++.|+.++.|.+.. ...........++|++
T Consensus 169 ~~~l~~~i~~~~~~~~~vvVsPD~Ga~~ra~~~a--~~~~~~~~~K~R~g--------------~~~~~~~~~~dv~gr~ 232 (326)
T PLN02297 169 IPLLKKRLQQLPDSDNIVIAFPDDGAWKRFHKQF--EHFPMVVCTKVREG--------------DKRIVRIKEGNPAGRH 232 (326)
T ss_pred HHHHHHHHHhccccCCcEEEecCccHHHHHHHHc--CCCCEEEEEeEECC--------------CceEEEecccccCCCe
Confidence 3445554432 234599999999998887776 58899988876531 1111111223479999
Q ss_pred EEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCcccccccCC
Q 030139 127 ALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGE 174 (182)
Q Consensus 127 VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~ 174 (182)
|+||||+++||+|+.++++.|++.|++.+.++|.|..+..++.++|.+
T Consensus 233 vlIVDDIidTG~Tl~~aa~~L~~~Ga~~V~~~~THglfs~~a~~~l~~ 280 (326)
T PLN02297 233 VVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHGVFPNESWERFTH 280 (326)
T ss_pred EEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEECcccChhHHHHHHh
Confidence 999999999999999999999999999999999999998888888875
No 57
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.53 E-value=9.1e-14 Score=119.71 Aligned_cols=108 Identities=23% Similarity=0.286 Sum_probs=88.0
Q ss_pred CccEEEeeCCCChhhHHHHHHHhC------CCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEeccc
Q 030139 61 NISVVAGIEARGFIFGPPIALAIG------AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLV 134 (182)
Q Consensus 61 ~~d~Iv~v~~~G~~~a~~la~~l~------vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvi 134 (182)
...+||+++.||...|..+|..++ .++.++.|.+..+++. ..+.+ ...++|++|+||||++
T Consensus 279 ~~pVVVsPD~Ga~~RAr~~A~~L~~~~~~~~~~avl~K~R~~~~~v-----------~~~~l--vgdV~Gk~vIIVDDII 345 (439)
T PTZ00145 279 YKPVIVSPDAGGVYRARKFQDGLNHRGISDCGIAMLIKQRTKPNEI-----------EKMDL--VGNVYDSDVIIVDDMI 345 (439)
T ss_pred CccEEEccCcchHHHHHHHHHHhccccccCCCEEEEEeecCCCCce-----------EEEec--cCCCCCCEEEEEccee
Confidence 445999999999999999999997 6888877765322110 11222 2348999999999999
Q ss_pred CchHHHHHHHHHHHhcCCeEEEEEEEEecCCcccccccCCCCccccc
Q 030139 135 ATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 181 (182)
Q Consensus 135 tTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~~~~~~l~ 181 (182)
+||+|+.++++.|++.||..|.++|+|..+..++.++|.+.++..++
T Consensus 346 dTG~Tl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~Iv 392 (439)
T PTZ00145 346 DTSGTLCEAAKQLKKHGARRVFAFATHGLFSGPAIERIEASPLEEVV 392 (439)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEEEEcccCChhHHHHHhcCCCCEEE
Confidence 99999999999999999999999999999998999999877765543
No 58
>PLN02440 amidophosphoribosyltransferase
Probab=99.52 E-value=8.5e-14 Score=122.22 Aligned_cols=115 Identities=19% Similarity=0.259 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEe--eeccCCCCCce-eeeeeeeeccceeEEEEc-c
Q 030139 44 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEV-ISEEYSLEYGKDVMEMHV-G 119 (182)
Q Consensus 44 ~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~--~rk~~~~~~~~-~~~~~~~~~~~~~~~l~~-~ 119 (182)
..-..+++.|++.+.. ++|+|+++|.+|+++|..+|+.+|+|+.. +|.+.. +.+ ............++.+.. .
T Consensus 259 ~~r~~~g~~La~~~~~-~~d~vvpVP~s~~~~A~~la~~lgiP~~~~lvr~ry~--~rt~i~~~q~~r~~~~~~k~~~~~ 335 (479)
T PLN02440 259 ESRLEFGEILATEIPV-DCDVVIPVPDSGRVAALGYAAKLGVPFQQGLIRSHYV--GRTFIEPSQKIRDFSVKLKLNPVR 335 (479)
T ss_pred HHHHHHHHHHHHhcCC-CCCEEEEeCCcHHHHHHHHHHHhCCCchhheEEEeec--cccccCcchhhhhhhheeeeeccc
Confidence 3444778888877653 78999999999999999999999999853 332221 111 100000000111122211 1
Q ss_pred ccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEE
Q 030139 120 AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 161 (182)
Q Consensus 120 ~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~ 161 (182)
...+||+||||||++|||+|+.++++.|+++||++|++.++.
T Consensus 336 ~~v~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~~ 377 (479)
T PLN02440 336 SVLEGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIAS 377 (479)
T ss_pred ccccCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 347899999999999999999999999999999999998886
No 59
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=99.51 E-value=4.4e-14 Score=108.65 Aligned_cols=118 Identities=24% Similarity=0.233 Sum_probs=79.2
Q ss_pred CccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCc-e----eeee------ee------eeccc--eeEEEEcccc
Q 030139 61 NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGE-V----ISEE------YS------LEYGK--DVMEMHVGAV 121 (182)
Q Consensus 61 ~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~-~----~~~~------~~------~~~~~--~~~~l~~~~~ 121 (182)
+.-+||++..+|..-|+.+|+.|++.+..+.+.++.... . .+.. .. ....+ ..+.+. ..
T Consensus 3 ~naVIVa~~~g~akRAts~Ad~L~l~~avih~e~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~e~~~~~vV--GD 80 (184)
T PF14572_consen 3 RNAVIVAKDPGGAKRATSFADRLRLGFAVIHGERRDSESDGVDGRHSPPMSRSAAVSSSEEIPEMTPKEKPPMNVV--GD 80 (184)
T ss_dssp GGEEEEESSGGGHHHHHHHHHHCT-EEEEE------------------------------------------EEEE--S-
T ss_pred CCCEEEeCCCCchHhHHHHHHHhCCCeeEecCccccccccccccccCCCccccccccccchhhhcccCcccceEEE--EE
Confidence 446899999999999999999999998877654431100 0 0000 00 00000 112222 34
Q ss_pred CCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCcccccccCCCCcccc
Q 030139 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVL 180 (182)
Q Consensus 122 ~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~~~~~~l 180 (182)
++||.++||||+++||+|+..+++.|++.||..|.+++.|+.+..++.++|.+.++..+
T Consensus 81 V~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~~A~~~l~~s~Id~v 139 (184)
T PF14572_consen 81 VKGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATHGVFSGDAPERLEESPIDEV 139 (184)
T ss_dssp -TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE---TTHHHHHHHSSESEE
T ss_pred ccCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeCcccCchHHHHHhhcCCeEE
Confidence 89999999999999999999999999999999999999999999899999888776554
No 60
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.50 E-value=6.3e-14 Score=122.58 Aligned_cols=117 Identities=20% Similarity=0.207 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEe-eeccCCCCCcee--eeeeeeeccceeEEEEccc
Q 030139 44 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP-MRKPKKLPGEVI--SEEYSLEYGKDVMEMHVGA 120 (182)
Q Consensus 44 ~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~-~rk~~~~~~~~~--~~~~~~~~~~~~~~l~~~~ 120 (182)
+....+++.||+... .+.|+|+++|..|.+.|..+|+.+|+|+.. +.|.++...++. ....+...-+..|... ..
T Consensus 267 ~~R~~~G~~La~~~~-~~~D~vv~VP~s~~~~A~~~a~~~gip~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~-~~ 344 (471)
T PRK06781 267 AARKNMGKRLAAEAP-IEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAV-RG 344 (471)
T ss_pred HHHHHHHHHHhhhCC-CCCcEEEEcChhHHHHHHHHHHHhCCCcccceEEEccCCCCCcCCCHHHHHHHHhcceecc-cc
Confidence 456689999998764 478999999999999999999999999864 222222110111 1000000112234322 24
Q ss_pred cCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEe
Q 030139 121 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 162 (182)
Q Consensus 121 ~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~ 162 (182)
..+||+|+||||++|||+|+.++++.|+++||++|++.+-..
T Consensus 345 ~i~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~sP 386 (471)
T PRK06781 345 VVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASP 386 (471)
T ss_pred ccCCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEECCC
Confidence 578999999999999999999999999999999998875543
No 61
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.50 E-value=7.1e-14 Score=121.69 Aligned_cols=114 Identities=19% Similarity=0.195 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEe-eeccCCCCCcee-e--eeeeeeccceeEEEEcc
Q 030139 44 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP-MRKPKKLPGEVI-S--EEYSLEYGKDVMEMHVG 119 (182)
Q Consensus 44 ~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~-~rk~~~~~~~~~-~--~~~~~~~~~~~~~l~~~ 119 (182)
+....+++.||+..+ .++|+|+++|..|+++|..+|+.+|+|+.. +.|.+. .+... . +.-+....+..+... .
T Consensus 257 ~~R~~~g~~La~~~~-~~~D~Vv~VP~sg~~~A~~la~~lgip~~~~l~r~~~-~~r~~i~~~q~~R~~~v~~k~~~~-~ 333 (442)
T TIGR01134 257 KARKRMGEKLARESP-VEADVVIPVPDSGRSAALGFAQASGIPYREGLIKNRY-VGRTFIMPTQELRELSVRLKLNPI-R 333 (442)
T ss_pred HHHHHHHHHHHHhcC-CCCEEEEEccCCHHHHHHHHHHHhCCCchHHeEEecc-ccccccCCCHHHHHHHHhhhcccc-c
Confidence 455688888887654 478999999999999999999999999864 222221 11111 1 000000011122211 2
Q ss_pred ccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEE
Q 030139 120 AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 160 (182)
Q Consensus 120 ~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l 160 (182)
...+||+|+||||++|||+|++++++.|+++|+++|++.+.
T Consensus 334 ~~~~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~ 374 (442)
T TIGR01134 334 EVFRGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIA 374 (442)
T ss_pred ccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEc
Confidence 34689999999999999999999999999999999998766
No 62
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.49 E-value=7.3e-14 Score=122.43 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEe-eeccCCCCCcee---eeeeeeeccceeEEEEcc
Q 030139 44 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP-MRKPKKLPGEVI---SEEYSLEYGKDVMEMHVG 119 (182)
Q Consensus 44 ~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~-~rk~~~~~~~~~---~~~~~~~~~~~~~~l~~~ 119 (182)
...+.+++.|++.+.. ++|+|+|||..|.++|..+|+.+|+|+.. ..|.+ ..+... .+..+...-+..|... .
T Consensus 269 ~~R~~lg~~La~~~~~-~~D~VvpVPnqa~~lA~~la~~lgip~~~~lvk~~-~~~rt~~~~~q~~R~~~vr~~f~~~-~ 345 (484)
T PRK07272 269 TARKRMGKRLAQEFPH-DADIVIGVPNSSLSAASGYAEESGLPYEMGLVKNQ-YVARTFIQPTQELREQGVRMKLSAV-S 345 (484)
T ss_pred HHHHHHHHHHHhhcCC-CCCEEEEecHHHHHHHHHHHHHHCCCcccCeEEEc-cCCccccCCCHHHHHHHHhhCcccc-c
Confidence 3446888888876643 57999999999999999999999999843 22222 111111 1100000111223321 2
Q ss_pred ccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEE
Q 030139 120 AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 160 (182)
Q Consensus 120 ~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l 160 (182)
...+||+|+||||++|||+|+.++++.|+++|+++|++.+.
T Consensus 346 ~~~~gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~ 386 (484)
T PRK07272 346 GVVKGKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIA 386 (484)
T ss_pred cccCCCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEe
Confidence 35789999999999999999999999999999999999998
No 63
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.49 E-value=9.4e-14 Score=122.58 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=76.7
Q ss_pred HHHHHHHH----HhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEe--eeccCCCCC-ceeeeeeeeeccceeEEEEccc
Q 030139 48 DTIDLFVE----RYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPG-EVISEEYSLEYGKDVMEMHVGA 120 (182)
Q Consensus 48 ~~~~~la~----~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~--~rk~~~~~~-~~~~~~~~~~~~~~~~~l~~~~ 120 (182)
.+++.|++ .+...+.|+|+++|..+..+|..+|+.+|+|+.. ++.+..... ....+..+...-+..|... ..
T Consensus 276 ~lg~~LA~~l~~~~~~~~~D~VvpVP~s~~~~A~~la~~lgip~~~~l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~-~~ 354 (501)
T PRK09246 276 RMGEKLAEKIKREWPDLDIDVVIPIPDTSRDAALEIARILGVPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAI-RA 354 (501)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCccHHHHHHHHHHHHCCCccceEEEEecccccccCcCHHHHHHHHHhhcCCc-cc
Confidence 44555554 4333357999999999999999999999999853 222211100 0000000000011223221 23
Q ss_pred cCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEe
Q 030139 121 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 162 (182)
Q Consensus 121 ~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~ 162 (182)
.++||+|+||||++|||+|+.++++.|+++||+.|++.++..
T Consensus 355 ~v~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~ap 396 (501)
T PRK09246 355 EFKGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASAAP 396 (501)
T ss_pred cccCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEEcc
Confidence 478999999999999999999999999999999999988854
No 64
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.49 E-value=2.3e-13 Score=119.88 Aligned_cols=116 Identities=17% Similarity=0.157 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEc---cc
Q 030139 44 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHV---GA 120 (182)
Q Consensus 44 ~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~---~~ 120 (182)
+....+++.||++.+ .+.|+|+++|.+|+++|..+|+.+|+|+.....+.+..+.+.....+ ......+.++. ..
T Consensus 286 ~~R~~~G~~La~~~~-~~~D~VvpVP~sG~~~A~g~a~~~gip~~~~l~kn~~~grtfi~~~q-~~r~~~~r~k~~~~~~ 363 (510)
T PRK07847 286 AARVEIGRRLAREHP-VEADLVIPVPESGTPAAVGYAQESGIPFGQGLVKNAYVGRTFIQPSQ-TIRQLGIRLKLNPLRE 363 (510)
T ss_pred HHHHHHHHHHHhhCC-CCCeEEEeccCchHHHHHHHHHHhCCChhhceEeecccccCccCcch-hhhhhceeeecCcccc
Confidence 456689999998654 47899999999999999999999999985532222111111111100 00111111211 23
Q ss_pred cCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEE
Q 030139 121 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 161 (182)
Q Consensus 121 ~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~ 161 (182)
..+||+||||||++|||+|+.++++.|+++|++.|++..-.
T Consensus 364 ~~~gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~ri~s 404 (510)
T PRK07847 364 VIRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRISS 404 (510)
T ss_pred ccCCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEECC
Confidence 36899999999999999999999999999999998876443
No 65
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.49 E-value=2.4e-13 Score=119.02 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEe-eeccCCCCCceeeeeeeeeccceeEEEEc---c
Q 030139 44 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP-MRKPKKLPGEVISEEYSLEYGKDVMEMHV---G 119 (182)
Q Consensus 44 ~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~-~rk~~~~~~~~~~~~~~~~~~~~~~~l~~---~ 119 (182)
+....+++.|++... .+.|+|+++|..|.+.|..+|+.+|+|+.. +.|.+....++..... +.....+.+.. .
T Consensus 275 ~~R~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~g~a~~~gip~~~~L~r~r~~~r~fi~~~q--~~R~~~~~~kl~~~~ 351 (474)
T PRK06388 275 QARVRMGMRLAKESP-VEADVVVPVPDSGRSQAIGFSMASGIPYTEGLIKNRYSERTFIMPTQ--SDRKAAIKLKLNPIR 351 (474)
T ss_pred HHHHHHHHHHHhhcc-CCCcEEEeeCCCcHHHHHHHHHHhCCCchhheEEecccCCcccCCch--hhhhhceeEEecccc
Confidence 345588888887653 478999999999999999999999999954 2222221111111000 00111122221 1
Q ss_pred ccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEE
Q 030139 120 AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 161 (182)
Q Consensus 120 ~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~ 161 (182)
...+||+||||||++|||+|+++++++|+++||++|++..-.
T Consensus 352 ~~i~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~s 393 (474)
T PRK06388 352 EVISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGS 393 (474)
T ss_pred ccccCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 246899999999999999999999999999999998886544
No 66
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.48 E-value=2.7e-13 Score=117.80 Aligned_cols=115 Identities=18% Similarity=0.183 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEe-eeccCCCCCceeeeeeeeeccceeEEEEc-ccc
Q 030139 44 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP-MRKPKKLPGEVISEEYSLEYGKDVMEMHV-GAV 121 (182)
Q Consensus 44 ~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~-~rk~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 121 (182)
.....+++.||+... .++|+|+++|..|.++|..+|+.+|+|+.. +.|.+. .+.+.....+.+ ....+.+.. ...
T Consensus 255 ~~R~~~G~~La~~~~-~~~D~Vv~VPdsg~~~A~~~a~~lgip~~~~l~k~r~-~~rtfi~~~qr~-~~~~~k~~~~~~~ 331 (442)
T PRK08341 255 SARYRMGVELARESP-AEGDVVIAVPDSGRTAALGFAHESGIPYMEGLIKNRY-IGRTFIMPSGRE-LKVKLKLSPVREV 331 (442)
T ss_pred HHHHHHHHHhhcccC-CCCceEEEecCchHHHHHHHHHHhCCCchheEEEecc-ccccccCcCchh-hhheeeecccccc
Confidence 455588888887654 468999999999999999999999999964 333321 111111000000 011122211 234
Q ss_pred CCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEE
Q 030139 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 161 (182)
Q Consensus 122 ~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~ 161 (182)
.+||+|+||||++|||+|+.++++.|+++||++|++.+..
T Consensus 332 v~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~~s 371 (442)
T PRK08341 332 INGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIAS 371 (442)
T ss_pred cCCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEEcC
Confidence 6899999999999999999999999999999999887643
No 67
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.46 E-value=1.5e-13 Score=120.16 Aligned_cols=116 Identities=18% Similarity=0.175 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEe-eeccCCCCCceeeee---eeeeccceeEEEEcc
Q 030139 44 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP-MRKPKKLPGEVISEE---YSLEYGKDVMEMHVG 119 (182)
Q Consensus 44 ~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~-~rk~~~~~~~~~~~~---~~~~~~~~~~~l~~~ 119 (182)
+....+++.||+... .+.|+|+++|..|.++|..+|+.+|+|+.. ..|.+.. +.+..+. .+...-+..|... .
T Consensus 267 ~~R~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~gla~~~gip~~~~lik~~~~-~Rt~i~~~~~~R~~nv~~~f~~~-~ 343 (475)
T PRK07631 267 TARKNLGKRLALEAP-VEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYV-GRTFIQPSQALREQGVKMKLSPV-R 343 (475)
T ss_pred HHHHHHHHHHHhhCC-CCCcEEEEechhHHHHHHHHHHHHCCCcccceEEEecC-CCCCcCCCHHHHHHHHhhhhhhc-c
Confidence 455689999997654 478999999999999999999999999964 2222211 1111100 0000011223221 2
Q ss_pred ccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEe
Q 030139 120 AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 162 (182)
Q Consensus 120 ~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~ 162 (182)
...+||+|+||||++|||+|+.++++.|+++||++|++.+-..
T Consensus 344 ~~v~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~sP 386 (475)
T PRK07631 344 GVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSP 386 (475)
T ss_pred cccCCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEeCC
Confidence 3478999999999999999999999999999999998876543
No 68
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.39 E-value=1.1e-12 Score=112.21 Aligned_cols=116 Identities=18% Similarity=0.203 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEcc---c
Q 030139 44 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVG---A 120 (182)
Q Consensus 44 ~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~---~ 120 (182)
.....+++.||++.+ .+.|+|+|||.+|.+.|..+|+.+|+|+..-.-+.+..+.+.-.+.+ +..+..+.++.+ .
T Consensus 267 ~~R~~mG~~La~e~~-~eaDvVipVPDSg~~aAig~A~~sGiPy~~GliKNrYvgRTFI~P~q-~~R~~~Vr~KLnpvr~ 344 (470)
T COG0034 267 EARKRMGEKLAEEIP-VEADVVIPVPDSGRPAAIGYARASGIPYEEGLIKNRYVGRTFIMPTQ-ELREKGVRLKLNPVRE 344 (470)
T ss_pred HHHHHHHHHHHHhCC-ccccEEEecCCCChHHHHHHHHHhCCchhhccccccccceeeeCCcH-HHHHhhhhhhcCchHH
Confidence 455688888888765 46799999999999999999999999996533222223332221111 111122222222 4
Q ss_pred cCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEE
Q 030139 121 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 161 (182)
Q Consensus 121 ~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~ 161 (182)
..+||||+||||.+-.|+|++..++.|+++||++|++..-.
T Consensus 345 ~v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvrias 385 (470)
T COG0034 345 VVKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIAS 385 (470)
T ss_pred HhCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEecC
Confidence 58999999999999999999999999999999999987544
No 69
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=99.34 E-value=6.4e-12 Score=102.23 Aligned_cols=125 Identities=22% Similarity=0.202 Sum_probs=97.6
Q ss_pred EechhhhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccce-
Q 030139 34 QDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKD- 112 (182)
Q Consensus 34 ~d~~~l~~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~- 112 (182)
+-+.++|..|..++++... ..+++.-+|++++.||...++.+|..|++-+..+.|.+... .+-.
T Consensus 140 ipVdnly~~p~~l~~ir~~----~~~~~~~vivSPdaGgaKR~~s~ad~l~~~fali~ker~k~-----------~~v~~ 204 (316)
T KOG1448|consen 140 IPVDNLYAEPAVLNYIREN----IPDSENAVIVSPDAGGAKRVTSLADRLNLDFALIHKERRKA-----------NEVDI 204 (316)
T ss_pred ccchhhccchHHHHHHHhh----CCCccceEEECCCcchhhhhHHHHHhhcchhhhhhhhhhcc-----------cccce
Confidence 4455788888887776655 35566678899999999999999999988775544433210 0111
Q ss_pred eEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCcccccccCCC
Q 030139 113 VMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEK 175 (182)
Q Consensus 113 ~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~~ 175 (182)
.+.+. ..++||.++||||+++||+|+..+.+.|.+.||++|.+++.|..+.....+++...
T Consensus 205 ~m~LV--GDv~gkvailVDDm~dt~GTl~~aa~~L~~~GA~kV~a~~THgVfs~~a~er~~~s 265 (316)
T KOG1448|consen 205 RMVLV--GDVKGKVAILVDDMADTCGTLIKAADKLLEHGAKKVYAIVTHGVFSGPAIERLNES 265 (316)
T ss_pred EEEEE--eccCCcEEEEecccccccchHHHHHHHHHhcCCceEEEEEcceeccccHHHHhhhc
Confidence 22332 34899999999999999999999999999999999999999999999999988764
No 70
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=99.17 E-value=2.3e-10 Score=90.55 Aligned_cols=100 Identities=22% Similarity=0.285 Sum_probs=73.3
Q ss_pred cEEEeeCCCChhhHHHHHHHhC-CCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCchHHHH
Q 030139 63 SVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLS 141 (182)
Q Consensus 63 d~Iv~v~~~G~~~a~~la~~l~-vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~ 141 (182)
-++|++.++|++++..+++.++ .++..+...+.. .. .+....+.......+|++||||||+++||+|+.
T Consensus 72 ~vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~-~t---------~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~ 141 (209)
T PRK00129 72 LVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDE-ET---------LEPVEYYVKLPEDIDERTVIVVDPMLATGGSAI 141 (209)
T ss_pred EEEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCC-CC---------CCCEEEEeeCCCcCCCCEEEEECCcccchHHHH
Confidence 4889999999999999999997 354444332210 00 000111222233478999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEEEEEecCCcccccccCC
Q 030139 142 AAIRLLERVGVHVVECACVIELPELKGRERLGE 174 (182)
Q Consensus 142 ~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~ 174 (182)
.+++.|++.|++.+.+++++..+ .+.+++.+
T Consensus 142 ~ai~~L~~~G~~~I~~~~ll~~~--~gl~~l~~ 172 (209)
T PRK00129 142 AAIDLLKKRGAKNIKVLCLVAAP--EGIKALEE 172 (209)
T ss_pred HHHHHHHHcCCCEEEEEEEecCH--HHHHHHHH
Confidence 99999999999999999998775 67777653
No 71
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.12 E-value=1.3e-09 Score=81.79 Aligned_cols=115 Identities=23% Similarity=0.303 Sum_probs=77.6
Q ss_pred hcCHHHHHHHHHHHHHHhc----CCCccEEEeeCCCChhhHHHHHHHhC------CCeEeeeccCCCCCceeeeeeeeec
Q 030139 40 LLDTKAFRDTIDLFVERYK----DKNISVVAGIEARGFIFGPPIALAIG------AKFVPMRKPKKLPGEVISEEYSLEY 109 (182)
Q Consensus 40 ~~~~~~~~~~~~~la~~~~----~~~~d~Iv~v~~~G~~~a~~la~~l~------vp~~~~rk~~~~~~~~~~~~~~~~~ 109 (182)
+.|++.++.....++.++- +.+.-+++|+..+|.++|..+++.++ +|+..+--. -|+.+.
T Consensus 6 ild~~~i~RtitRia~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt----------~yRDDl 75 (179)
T COG2065 6 ILDEAAIRRTITRIAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDIT----------LYRDDL 75 (179)
T ss_pred eCCHHHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeeeEEeE----------Eeechh
Confidence 4566666655555554443 34556999999999999999999873 455332110 111110
Q ss_pred cc-e---e-EEE-EccccCCCCeEEEEecccCchHHHHHHHHHHHhcCC-eEEEEEEEEecC
Q 030139 110 GK-D---V-MEM-HVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGV-HVVECACVIELP 164 (182)
Q Consensus 110 ~~-~---~-~~l-~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga-~~v~v~~l~~~~ 164 (182)
.. + . ..- .......||+|+|||||+-||.|+++++++|...|- ..+..+|+++++
T Consensus 76 ~~~~~~~p~~~~t~~~~di~~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~LavLVDRG 137 (179)
T COG2065 76 TQKGPLRPQAKTTILPFDITGKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAVLVDRG 137 (179)
T ss_pred hhcCccCCcccCccCcccccCCEEEEEeeecccCccHHHHHHHHHhcCCcceEEEEEEEcCC
Confidence 00 0 0 000 002347899999999999999999999999999975 689999999986
No 72
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=99.09 E-value=7.6e-10 Score=87.46 Aligned_cols=98 Identities=23% Similarity=0.281 Sum_probs=71.8
Q ss_pred cEEEeeCCCChhhHHHHHHHhC-CCeEeeeccCCCCCceeeeeeeeecccee-EEEEccccCCCCeEEEEecccCchHHH
Q 030139 63 SVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDV-MEMHVGAVQAGERALIVDDLVATGGTL 140 (182)
Q Consensus 63 d~Iv~v~~~G~~~a~~la~~l~-vp~~~~rk~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~gk~VllVDDvitTG~Tl 140 (182)
-++|++.++|++++..+++.+. .++..+...+.. +..+.. .+.......+|++||||||+++||+|+
T Consensus 70 i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~-----------~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl 138 (207)
T TIGR01091 70 IVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNE-----------ETLKPVPYYSKLPEDIDERTVIVLDPMLATGGTM 138 (207)
T ss_pred EEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeCC-----------CCCCCEEEEecCCCCCCCCEEEEECCCccchHHH
Confidence 5788899999999999999986 344433322210 001111 111223347899999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEEEEecCCcccccccC
Q 030139 141 SAAIRLLERVGVHVVECACVIELPELKGRERLG 173 (182)
Q Consensus 141 ~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~ 173 (182)
..+++.|++.|++.+.+++++..+ .+.+++.
T Consensus 139 ~~ai~~L~~~G~~~I~v~~ll~~~--~gl~~l~ 169 (207)
T TIGR01091 139 IAALDLLKKRGAKKIKVLSIVAAP--EGIEAVE 169 (207)
T ss_pred HHHHHHHHHcCCCEEEEEEEecCH--HHHHHHH
Confidence 999999999999999999998775 6666665
No 73
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.08 E-value=2.7e-09 Score=83.25 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=73.8
Q ss_pred HHHHHHHHhcC---CCccEEEeeCCCChhhHHHHHHHhCCCe--EeeeccCCCCCc-e------------ee--e--eee
Q 030139 49 TIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKF--VPMRKPKKLPGE-V------------IS--E--EYS 106 (182)
Q Consensus 49 ~~~~la~~~~~---~~~d~Iv~v~~~G~~~a~~la~~l~vp~--~~~rk~~~~~~~-~------------~~--~--~~~ 106 (182)
.++.|+..+.. .+..+++++|+||++.|.++|+.||.|+ .++||-....++ . .. . .+.
T Consensus 10 AGr~La~~l~~~~~~~~~iVlaLpRGGvpva~evA~~lga~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~~~~~~ 89 (220)
T COG1926 10 AGRKLAQELAALRDLKDVIVLALPRGGVPVAFEVAQALGAPLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDVVRSLG 89 (220)
T ss_pred HHHHHHHHHHhhccCCCcEEEEecCCCchHHHHHHHHhCCCeeEEEEeecCCCCCchhceeeeccCCcEecchhhhhhcc
Confidence 44445444443 2455999999999999999999999997 446665432111 0 00 0 000
Q ss_pred eecc-------c--eeE-----EEEc-c--ccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEE
Q 030139 107 LEYG-------K--DVM-----EMHV-G--AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 161 (182)
Q Consensus 107 ~~~~-------~--~~~-----~l~~-~--~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~ 161 (182)
.+.. . ..+ .... + ...+|++|+||||-+.||.||.++++.+++.+++.+.+++=+
T Consensus 90 i~~~~i~~~~~~e~~El~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV 161 (220)
T COG1926 90 IDDAYIEAAAARERKELLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPV 161 (220)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEccc
Confidence 0000 0 000 0011 1 237899999999999999999999999999999987776544
No 74
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.02 E-value=3.6e-09 Score=80.05 Aligned_cols=124 Identities=16% Similarity=0.270 Sum_probs=87.8
Q ss_pred eEEechhhhcCHHHHHHHHHHHHHHhcC---CCccEEEeeCCCChhhHHHHHHHh-C------CCeEe--eeccCCCCCc
Q 030139 32 MFQDITTLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAI-G------AKFVP--MRKPKKLPGE 99 (182)
Q Consensus 32 ~~~d~~~l~~~~~~~~~~~~~la~~~~~---~~~d~Iv~v~~~G~~~a~~la~~l-~------vp~~~--~rk~~~~~~~ 99 (182)
.+-|++.++.-+.++..-.+.||..+.+ .++-+.+|+..||+.+-+.+-+++ + +|+.+ +|-++
T Consensus 28 y~~Dls~v~ip~gli~dr~~rlakDi~~~~g~~~i~~lcVlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~kS----- 102 (216)
T KOG3367|consen 28 YTGDLSGVVIPHGLIRDRVERLAKDIMKEIGNKPIIFLCVLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRAKS----- 102 (216)
T ss_pred ecccccccccccchhhhHHHHhhhhhhhccCCCceEEEEEecchhHHHHHHHHHHhhcccCCCcceeeeeeehhh-----
Confidence 3456666666677777888888877654 355688999999998877777775 3 45432 33222
Q ss_pred eeeeeeeeeccceeEEE-Ecc--ccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCC
Q 030139 100 VISEEYSLEYGKDVMEM-HVG--AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 165 (182)
Q Consensus 100 ~~~~~~~~~~~~~~~~l-~~~--~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~ 165 (182)
|..+...+.+.+ ..+ ....||+||||||+++||.||...++.+++.+++.+.++.++.+..
T Consensus 103 -----Y~n~~stg~iqiig~d~l~~ltgK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vasLL~Krt 166 (216)
T KOG3367|consen 103 -----YCNDQSTGDIQIIGGDDLSTLTGKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVASLLVKRT 166 (216)
T ss_pred -----hcCCcccCCceeecCCCHHHhcCCcEEEEEeeccccchHHHHHHHHHhcCccceeeeeeccccc
Confidence 211111111111 111 2378999999999999999999999999999999999999998764
No 75
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.99 E-value=1e-09 Score=92.13 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeee--ecc-ceeEEEEcccc
Q 030139 45 AFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSL--EYG-KDVMEMHVGAV 121 (182)
Q Consensus 45 ~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~--~~~-~~~~~l~~~~~ 121 (182)
....+++.||.. ...+.|+|+++|.+|..-|...|...|+||.....+.+.-+.+..++.+. ..+ +..|..- ...
T Consensus 276 ~R~~~G~~LA~e-~P~d~DvVi~VPdS~~~aAlgyA~~sG~py~e~l~rnrYvGRTFI~P~q~iR~~~V~~Kl~~l-~~~ 353 (474)
T KOG0572|consen 276 VRLQCGEQLATE-APVDADVVIPVPDSGTTAALGYAAKSGLPYQEVLIRNRYVGRTFIEPNQRIRQLGVKKKLGPL-RQN 353 (474)
T ss_pred HHHHHHhHhhhc-CCcccceEEecCCchhHHHHHHHHHhCCchhhhhhhcccccceecCccHHHHHhhhhhhcccc-hhh
Confidence 444677777763 23589999999999999999999999999976543333323322211110 000 0112111 234
Q ss_pred CCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEE
Q 030139 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 160 (182)
Q Consensus 122 ~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l 160 (182)
.+||||+||||.|..|.|+...+++|+++||++|++...
T Consensus 354 ~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~riA 392 (474)
T KOG0572|consen 354 FEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRIA 392 (474)
T ss_pred cCCceEEEEecceeccCchHHHHHHHHHcCCcEEEEEec
Confidence 789999999999999999999999999999999987644
No 76
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=98.77 E-value=2.2e-07 Score=71.86 Aligned_cols=136 Identities=18% Similarity=0.243 Sum_probs=93.8
Q ss_pred CCCceEEechh-----hhcCHHHHHHHHHHHHHHhcC--CCccEEEeeCCCChhhHHHHHHHhCCCeEeee-ccCCCCCc
Q 030139 28 KPGIMFQDITT-----LLLDTKAFRDTIDLFVERYKD--KNISVVAGIEARGFIFGPPIALAIGAKFVPMR-KPKKLPGE 99 (182)
Q Consensus 28 ~~~~~~~d~~~-----l~~~~~~~~~~~~~la~~~~~--~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~r-k~~~~~~~ 99 (182)
+++++| ++. +..+|..+...+..|+..+.+ .+.-+++|..+.+..++..+++.++-...++. .++..++.
T Consensus 15 KR~fLf--VSkVLGKHiPv~P~~~~~~~~~La~~~~~~~~~~~lvIGfAETATgLG~~V~~~~~~~~~ylhTTR~~v~~~ 92 (191)
T PF15609_consen 15 KRAFLF--VSKVLGKHIPVRPSVMRDAGRLLAAQVPEALPGPVLVIGFAETATGLGHGVFDALGAACLYLHTTREPVPGV 92 (191)
T ss_pred CceeEE--EecccCcccCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEhHHHHHHHHHHHHHhhhccceeeeccccCCCC
Confidence 456655 343 455899999999999998876 36789999999999999999999974443333 33344442
Q ss_pred eeeeeeeeeccce--e-EEEEc-cccCCCCeEEEEecccCchHHHHHHHHHHHhcCC-eEEEEEEEEecCC
Q 030139 100 VISEEYSLEYGKD--V-MEMHV-GAVQAGERALIVDDLVATGGTLSAAIRLLERVGV-HVVECACVIELPE 165 (182)
Q Consensus 100 ~~~~~~~~~~~~~--~-~~l~~-~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga-~~v~v~~l~~~~~ 165 (182)
...-.|..++... . ++... ..+...+.+++|||-+|||.|...+++.|.+.-+ +.+.++++++-..
T Consensus 93 ~~~~~F~E~HSHAt~h~ly~~~~~~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p~~~yvvasL~d~~~ 163 (191)
T PF15609_consen 93 PPLLEFEEEHSHATDHLLYPPDPDLLRNARTLVLVDDEISTGNTFLNLIRALHAKYPRKRYVVASLLDWRS 163 (191)
T ss_pred ccceeeeccccccccceecCCChHHhcCCCCEEEEecCccchHHHHHHHHHHHHhCCCceEEEEEEeeCCC
Confidence 2222333333322 2 22211 1334577899999999999999999999988755 4567777777643
No 77
>PLN02541 uracil phosphoribosyltransferase
Probab=98.13 E-value=1.4e-05 Score=64.69 Aligned_cols=50 Identities=36% Similarity=0.628 Sum_probs=41.6
Q ss_pred CCCCeEEEEecccCchHHHHHHHHHHHhcCCe--EEEEEEEEecCCcccccccC
Q 030139 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVH--VVECACVIELPELKGRERLG 173 (182)
Q Consensus 122 ~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~--~v~v~~l~~~~~~~~~~~l~ 173 (182)
..+++|+|+||++.||+|+..+++.|++.|+. .+.+++++.-+ .|.+++.
T Consensus 155 ~~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~v~~ias~--~Gl~~i~ 206 (244)
T PLN02541 155 PEGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCAVAAP--PALKKLS 206 (244)
T ss_pred CCCCEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEEEEEEECH--HHHHHHH
Confidence 34779999999999999999999999999997 67777777654 5666654
No 78
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=97.92 E-value=0.00018 Score=57.77 Aligned_cols=139 Identities=17% Similarity=0.136 Sum_probs=93.6
Q ss_pred echhhhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCC-----------Cceeee
Q 030139 35 DITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLP-----------GEVISE 103 (182)
Q Consensus 35 d~~~l~~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~-----------~~~~~~ 103 (182)
-..++-.+|-+++. +.+.+++++..+||+-..+...-|...|+.|.+.+..+.-..+.. -+....
T Consensus 145 pvdnlraspfllqy----iqe~ipdyrnavivaksp~~akka~syaerlrlglavihge~k~~e~d~~dgr~spp~~~~~ 220 (354)
T KOG1503|consen 145 PVDNLRASPFLLQY----IQEEIPDYRNAVIVAKSPGVAKKAQSYAERLRLGLAVIHGEQKDTESDLVDGRHSPPPVVTA 220 (354)
T ss_pred cccccccCHHHHHH----HHHhCccccceEEEecCcchhhHHHhHHHHHhhceeEeeccccccccccccCCcCCCCcccc
Confidence 34455556655544 445556777778898888888999999999987776553222110 011000
Q ss_pred --eeeee------ccceeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCcccccccCCC
Q 030139 104 --EYSLE------YGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEK 175 (182)
Q Consensus 104 --~~~~~------~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~~~ 175 (182)
.-..+ ..+..+.+. ..+.|+-.++|||+++.-.+--++.+.|++.||-.+.+++.|+..+..+-..|++.
T Consensus 221 t~~~~~~lp~~~~k~kppltvv--gdvggriaimvddiiddvqsfvaaae~lkergaykiyv~athgllssdapr~lees 298 (354)
T KOG1503|consen 221 TTHPSLELPAQISKEKPPLTVV--GDVGGRIAIMVDDIIDDVQSFVAAAEVLKERGAYKIYVMATHGLLSSDAPRLLEES 298 (354)
T ss_pred ccCccccCchhhcccCCCeEEE--eccCceEEEEehhhHHhHHHHHHHHHHHHhcCceEEEEEeecccccccchhhhhcC
Confidence 00000 001122222 23678889999999999999999999999999999999999998877777777777
Q ss_pred Cccc
Q 030139 176 PLFV 179 (182)
Q Consensus 176 ~~~~ 179 (182)
|+..
T Consensus 299 ~ide 302 (354)
T KOG1503|consen 299 PIDE 302 (354)
T ss_pred CCce
Confidence 7654
No 79
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.84 E-value=6.9e-05 Score=58.95 Aligned_cols=98 Identities=20% Similarity=0.276 Sum_probs=67.2
Q ss_pred EEEeeCCCChhhHHHHHHHhC-CCeEeeeccCCCCCceeeeeeeeeccceeEEE-EccccCCCCeEEEEecccCchHHHH
Q 030139 64 VVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEM-HVGAVQAGERALIVDDLVATGGTLS 141 (182)
Q Consensus 64 ~Iv~v~~~G~~~a~~la~~l~-vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~gk~VllVDDvitTG~Tl~ 141 (182)
++|++-+.|..+...+.+... .+...+--.|. + +..+...+. +.....+++.|+|+|=++.||+|+.
T Consensus 73 ~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~~Rd-e----------et~~p~~yy~KLP~~~~~~~viv~DPMLATG~s~i 141 (210)
T COG0035 73 VIVPILRAGLGMVEGLLKLIPSARVGHIGIYRD-E----------ETLEPVLYYEKLPEDIDERTVIVLDPMLATGGSAI 141 (210)
T ss_pred EEEEEeeccccHHHHHHHhCCcceEEEEEEEec-C----------ccCceehhHHhCCCcccCCeEEEECchhhccHhHH
Confidence 567788999999999998763 12211111110 0 111111111 1133478999999999999999999
Q ss_pred HHHHHHHhc-CCeEEEEEEEEecCCcccccccCC
Q 030139 142 AAIRLLERV-GVHVVECACVIELPELKGRERLGE 174 (182)
Q Consensus 142 ~~~~~L~~~-ga~~v~v~~l~~~~~~~~~~~l~~ 174 (182)
.+++.|++. |++.+.+++++.-+ .|.+++.+
T Consensus 142 ~ai~~L~~~G~~~~I~~v~~vAap--eGi~~v~~ 173 (210)
T COG0035 142 AAIDLLKKRGGPKNIKVVSLVAAP--EGIKAVEK 173 (210)
T ss_pred HHHHHHHHhCCCceEEEEEEEecH--HHHHHHHH
Confidence 999999999 88999999998876 56666543
No 80
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=97.79 E-value=0.00019 Score=56.73 Aligned_cols=98 Identities=23% Similarity=0.278 Sum_probs=66.1
Q ss_pred cEEEeeCCCChhhHHHHHHHhC-CCeEeeeccCCCCCceeeeeeeeeccceeEEE-EccccCCCCeEEEEecccCchHHH
Q 030139 63 SVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEM-HVGAVQAGERALIVDDLVATGGTL 140 (182)
Q Consensus 63 d~Iv~v~~~G~~~a~~la~~l~-vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~gk~VllVDDvitTG~Tl 140 (182)
-++|++.++|.++...+.+.+. .++..+.-.+.. +..+..++. +.+....+++|+|+|-++.||+|+
T Consensus 69 i~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~-----------~t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s~ 137 (207)
T PF14681_consen 69 ICIVPILRAGLPMLEGFREVFPDARVGHIGIQRDE-----------ETLEPVLYYNKLPEDIENRKVILLDPMLATGGSA 137 (207)
T ss_dssp EEEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEET-----------TTSSEEEEEEE--TTGTTSEEEEEESEESSSHHH
T ss_pred EEEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcC-----------CccceeeeHhhCCCCccCCEEEEEeccccchhhH
Confidence 4788888999999999999873 344332211100 011111221 223335889999999999999999
Q ss_pred HHHHHHHHhcCC--eEEEEEEEEecCCcccccccC
Q 030139 141 SAAIRLLERVGV--HVVECACVIELPELKGRERLG 173 (182)
Q Consensus 141 ~~~~~~L~~~ga--~~v~v~~l~~~~~~~~~~~l~ 173 (182)
..+++.|++.|. +.+.+++++.-+ .|.+++.
T Consensus 138 ~~ai~~L~~~G~~~~~I~~v~~ias~--~Gl~~l~ 170 (207)
T PF14681_consen 138 IAAIEILKEHGVPEENIIIVSVIASP--EGLERLL 170 (207)
T ss_dssp HHHHHHHHHTTG-GGEEEEEEEEEEH--HHHHHHH
T ss_pred HHHHHHHHHcCCCcceEEEEEEEecH--HHHHHHH
Confidence 999999999887 577777777654 5666655
No 81
>PF15610 PRTase_3: PRTase ComF-like
Probab=96.15 E-value=0.086 Score=43.20 Aligned_cols=117 Identities=10% Similarity=0.136 Sum_probs=67.3
Q ss_pred hhhcCHHHHHHHHHHHHHHhcC------CCccEEEeeC--CCChhhHHHHHHH-----h-------CCCe-EeeeccCCC
Q 030139 38 TLLLDTKAFRDTIDLFVERYKD------KNISVVAGIE--ARGFIFGPPIALA-----I-------GAKF-VPMRKPKKL 96 (182)
Q Consensus 38 ~l~~~~~~~~~~~~~la~~~~~------~~~d~Iv~v~--~~G~~~a~~la~~-----l-------~vp~-~~~rk~~~~ 96 (182)
-.++|...++.+|+.|+..|-. ..-|-||.++ ...+|-|+..-.. | |.|- ..+.-.|..
T Consensus 27 fKfGd~~~A~~fg~~La~~fi~~~~~~~~~~d~iV~~~Sp~~~IPTAsn~L~~~Fv~~LNr~L~~~~~~~~~~~ki~R~~ 106 (274)
T PF15610_consen 27 FKFGDDRVAEQFGRELADGFIAQFSNALLTHDQIVMMPSPYRSIPTASNVLCDHFVKELNRHLAHNGAPPVIEVKIHRNQ 106 (274)
T ss_pred eecCCHHHHHHHHHHHHHHHHHhhHhhhccCceEEEecCccccCccHHHHHHHHHHHHHHHHHHHcCCCcceEeeecccc
Confidence 3688999999999999876532 1234444444 3666655433222 2 3332 222211111
Q ss_pred C--Cceeeeee--e-eeccceeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEE
Q 030139 97 P--GEVISEEY--S-LEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVV 155 (182)
Q Consensus 97 ~--~~~~~~~~--~-~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v 155 (182)
+ +....-++ + .....+.+.+.. ...+|+.||++|||-.||++-..+.+.+++.|++..
T Consensus 107 ty~~DYg~Ls~edR~~li~nd~y~ID~-~~l~gk~lIflDDIkITGshE~~V~~~~~~~~~~~~ 169 (274)
T PF15610_consen 107 TYCEDYGNLSFEDRKSLISNDTYHIDK-EFLSGKHLIFLDDIKITGSHEDKVRKILKEYGLEND 169 (274)
T ss_pred CcccccccCCHHhhhccccCCceEecH-HHhCCcEEEEeccEEecCcHHHHHHHHHHHcCcccc
Confidence 0 11100000 0 000112233332 346999999999999999999999999999999863
No 82
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=93.57 E-value=1.5 Score=31.37 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=43.9
Q ss_pred CCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCc--hH--HHHHHHH
Q 030139 70 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT--GG--TLSAAIR 145 (182)
Q Consensus 70 ~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitT--G~--Tl~~~~~ 145 (182)
.+.-.+|..+|+.||.+.......+... | ..++......+|++|+||-..... -. -+.-+++
T Consensus 7 ~~~~~La~~ia~~L~~~~~~~~~~~F~d------------G--E~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~ 72 (116)
T PF13793_consen 7 SSSQDLAERIAEALGIPLGKVETKRFPD------------G--ETYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLID 72 (116)
T ss_dssp SSGHHHHHHHHHHTTS-EE-EEEEE-TT------------S---EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEEcCC------------C--CEEEEecccccCCceEEEEecCCchhHHHHHHHHHHH
Confidence 3445899999999999886653222111 2 223333445789999999998875 22 3455678
Q ss_pred HHHhcCCeEEEEE
Q 030139 146 LLERVGVHVVECA 158 (182)
Q Consensus 146 ~L~~~ga~~v~v~ 158 (182)
+++..|++.|.++
T Consensus 73 a~r~~~a~~i~~V 85 (116)
T PF13793_consen 73 ALRRAGAKRITLV 85 (116)
T ss_dssp HHHHTTBSEEEEE
T ss_pred HHHHcCCcEEEEe
Confidence 8899999866543
No 83
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=93.56 E-value=0.24 Score=39.01 Aligned_cols=61 Identities=18% Similarity=0.300 Sum_probs=42.5
Q ss_pred cccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeE--EEEEEEEecCCcccccccCCCCcccc
Q 030139 119 GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHV--VECACVIELPELKGRERLGEKPLFVL 180 (182)
Q Consensus 119 ~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~--v~v~~l~~~~~~~~~~~l~~~~~~~l 180 (182)
...+..++|||+=-+++||.|+..+++.|++.|... +....+.-.+ ..++....+.|...+
T Consensus 184 ppDI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~IiL~sLF~tP-~gak~i~~~fP~iti 246 (267)
T KOG1017|consen 184 PPDITSRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNIILVSLFITP-TGAKNITRKFPYITI 246 (267)
T ss_pred CCcccceeEEEEeeeecCCccHHHHHHHHHHcCCCcccEEEEEeeecc-hhhHHHHHhCCeEEE
Confidence 345678899999999999999999999999999854 3333333332 234444555665443
No 84
>KOG1377 consensus Uridine 5'- monophosphate synthase/orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=91.92 E-value=0.56 Score=38.03 Aligned_cols=123 Identities=17% Similarity=0.148 Sum_probs=66.9
Q ss_pred EEechhhhcCHHHHHHHHHHHHHHhcC--CCccE--EEeeCCCC-hhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeee
Q 030139 33 FQDITTLLLDTKAFRDTIDLFVERYKD--KNISV--VAGIEARG-FIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSL 107 (182)
Q Consensus 33 ~~d~~~l~~~~~~~~~~~~~la~~~~~--~~~d~--Iv~v~~~G-~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~ 107 (182)
|.|.+ ....+..+..+++.++..+-+ ..+|+ +++++..| ..-+..-|...+++.+..+..-+. +..+. -.
T Consensus 65 ~~df~-~~~~~k~L~aLA~a~~f~I~edrkffDigntvg~qY~gg~~kia~wadl~n~h~v~g~~i~~g---~~rk~-~k 139 (261)
T KOG1377|consen 65 FFDFS-LFNSGKDLRALAQAYAFLIFEDRKFFDIGNTVGLQYKGGPLKIASWADLVNAHGVPGRGIIKG---LNRKL-LK 139 (261)
T ss_pred eeccc-ccccHHHHHHHHHHHHHHHHhhhhcccccceeccccccchHHHHHHHHHHhccCcccchHHHH---Hhhhc-cc
Confidence 44444 555788888999988876644 46899 99999888 455556666666655443311000 00000 00
Q ss_pred eccceeEEEEccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecC
Q 030139 108 EYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELP 164 (182)
Q Consensus 108 ~~~~~~~~l~~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~ 164 (182)
++++...-+ ....++|.+|+.||+.++|.-+.+. ...-....+.+..+..++.
T Consensus 140 ~~~egG~ll--lAems~kg~L~~~dy~ea~~aI~ee--~~d~~~G~v~g~~~~ldrq 192 (261)
T KOG1377|consen 140 DHGEGGVLL--LAELSSKGSLITGDYTEAATAIAEE--DIDFVNGFVAGSIVALDRQ 192 (261)
T ss_pred cCCCCceEE--EEEeccCCceeehhHHHHHHHHHHh--hhchheeEEeeeeeeccHH
Confidence 112222222 2336688899999966655555554 2222233445555555543
No 85
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=90.00 E-value=4.9 Score=34.06 Aligned_cols=81 Identities=11% Similarity=0.138 Sum_probs=51.0
Q ss_pred cEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCc-hHH--
Q 030139 63 SVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGT-- 139 (182)
Q Consensus 63 d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitT-G~T-- 139 (182)
+.++-.-.+.-.+|..+|+.||++...+..++... | +.+++....+.|++|+||-..... ...
T Consensus 21 ~~~i~~g~~~~~la~~ia~~lg~~l~~~~~~~FpD------------G--E~~v~i~~~vrg~~V~ivqs~~~p~nd~l~ 86 (330)
T PRK02812 21 RLRLFSGSSNPALAQEVARYLGMDLGPMIRKRFAD------------G--ELYVQIQESIRGCDVYLIQPTCAPVNDHLM 86 (330)
T ss_pred CEEEEECCCCHHHHHHHHHHhCCCceeeEEEECCC------------C--CEEEEeCCCCCCCEEEEECCCCCCccHHHH
Confidence 33343345667999999999999876543222211 2 223333344789999999885432 222
Q ss_pred -HHHHHHHHHhcCCeEEEE
Q 030139 140 -LSAAIRLLERVGVHVVEC 157 (182)
Q Consensus 140 -l~~~~~~L~~~ga~~v~v 157 (182)
+.-+++.+++.|++.+.+
T Consensus 87 eLll~~~alr~~ga~ri~~ 105 (330)
T PRK02812 87 ELLIMVDACRRASARQITA 105 (330)
T ss_pred HHHHHHHHHHHhCCceEEE
Confidence 456677888999986553
No 86
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=89.90 E-value=4.3 Score=35.80 Aligned_cols=81 Identities=12% Similarity=0.115 Sum_probs=50.5
Q ss_pred cEEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCc-hH---
Q 030139 63 SVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GG--- 138 (182)
Q Consensus 63 d~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitT-G~--- 138 (182)
+.++-.-.+.-.+|..+|..||+++..+..++..++ ..+++....+.|+.|+||-..... -.
T Consensus 119 ~m~I~sgs~~~~LA~~IA~~Lg~~l~~~~~~rFpDG--------------E~~Vri~e~VrG~dV~IVqS~~~pvNd~Lm 184 (439)
T PTZ00145 119 NAILFSGSSNPLLSKNIADHLGTILGRVHLKRFADG--------------EVSMQFLESIRGKDVYIIQPTCPPVNENLI 184 (439)
T ss_pred CeEEEECCCCHHHHHHHHHHhCCCceeeEEEECCCC--------------CEEEEECCCcCCCeEEEEecCCCCCcHHHH
Confidence 344444455679999999999998866543322122 222332344789999999875432 11
Q ss_pred HHHHHHHHHHhcCCeEEEE
Q 030139 139 TLSAAIRLLERVGVHVVEC 157 (182)
Q Consensus 139 Tl~~~~~~L~~~ga~~v~v 157 (182)
-+.-+++.++.+||+.|.+
T Consensus 185 ELLllidAlr~agAkrItl 203 (439)
T PTZ00145 185 ELLLMISTCRRASAKKITA 203 (439)
T ss_pred HHHHHHHHHHHhccCeEEE
Confidence 2344567778999986554
No 87
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=87.89 E-value=7.7 Score=32.90 Aligned_cols=80 Identities=14% Similarity=0.055 Sum_probs=49.3
Q ss_pred EEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCc-hHH---
Q 030139 64 VVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGT--- 139 (182)
Q Consensus 64 ~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitT-G~T--- 139 (182)
.++-.-.+.-.+|..+|+.||++...+..++... | +.+++....++|+.|+||=++... -..
T Consensus 10 ~~i~~~~~~~~La~~ia~~lg~~l~~~~~~~Fpd------------G--E~~v~i~~~vrg~dV~ivqs~~~p~nd~l~e 75 (332)
T PRK00553 10 HVIFSLSKAKKLVDSICRKLSMKPGEIVIQKFAD------------G--ETYIRFDESVRNKDVVIFQSTCSPVNDSLME 75 (332)
T ss_pred eEEEECCCCHHHHHHHHHHhCCceeeeEEEECCC------------C--CEEEEECCCCCCCEEEEEcCCCCCCchHHHH
Confidence 3333334556899999999999886553322211 2 222332344789999999876432 111
Q ss_pred HHHHHHHHHhcCCeEEEE
Q 030139 140 LSAAIRLLERVGVHVVEC 157 (182)
Q Consensus 140 l~~~~~~L~~~ga~~v~v 157 (182)
+.-+++.+++.||+.+.+
T Consensus 76 Lll~~~alr~~~a~~i~~ 93 (332)
T PRK00553 76 LLIAIDALKRGSAKSITA 93 (332)
T ss_pred HHHHHHHHHHcCCCeEEE
Confidence 445667788999986544
No 88
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=87.57 E-value=4.5 Score=33.80 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=44.4
Q ss_pred hhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCc--hHH--HHHHHHHHHh
Q 030139 74 IFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT--GGT--LSAAIRLLER 149 (182)
Q Consensus 74 ~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitT--G~T--l~~~~~~L~~ 149 (182)
.+|..+|+.+|+++.....++... |+ .+++....++|++|+||-..... -.. +.-+++.+++
T Consensus 2 ~lA~~ia~~lg~~l~~~~~~~Fpd------------GE--~~v~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~ 67 (302)
T PLN02369 2 ALSQEIACYLGLELGKITIKRFAD------------GE--IYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRR 67 (302)
T ss_pred hHHHHHHHHhCCceeeeEEEECCC------------CC--EEEEECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHH
Confidence 478999999999986654332212 22 22222344689999999886522 222 4566788889
Q ss_pred cCCeEEEE
Q 030139 150 VGVHVVEC 157 (182)
Q Consensus 150 ~ga~~v~v 157 (182)
.|++.+.+
T Consensus 68 ~~a~~i~~ 75 (302)
T PLN02369 68 ASAKRITA 75 (302)
T ss_pred cCCCeEEE
Confidence 99986543
No 89
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=87.56 E-value=6.4 Score=32.52 Aligned_cols=74 Identities=12% Similarity=0.191 Sum_probs=46.7
Q ss_pred CCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCchH---HHHHHHHH
Q 030139 70 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGG---TLSAAIRL 146 (182)
Q Consensus 70 ~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~---Tl~~~~~~ 146 (182)
.+.-.+|..+|+.+|+++.....++... |+ .+++....+.|++|+|+-....-.. -+.-+++.
T Consensus 6 ~~~~~la~~ia~~l~~~~~~~~~~~Fpd------------GE--~~v~i~~~v~g~~v~i~~~~~~~~d~l~ell~~~~a 71 (285)
T PRK00934 6 SASQLLASEVARLLNTELALVETKRFPD------------GE--LYVRILGEIDGEDVVIISTTYPQDENLVELLLLIDA 71 (285)
T ss_pred CCCHHHHHHHHHHHCCceEeeEEEECCC------------CC--EEEEECCCcCCCEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 3446899999999999987654333222 22 1222223478999988876433233 24456778
Q ss_pred HHhcCCeEEEE
Q 030139 147 LERVGVHVVEC 157 (182)
Q Consensus 147 L~~~ga~~v~v 157 (182)
+++.|++.+.+
T Consensus 72 lr~~ga~~i~~ 82 (285)
T PRK00934 72 LRDEGAKSITL 82 (285)
T ss_pred HHHcCCCeEEE
Confidence 88999986654
No 90
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=87.40 E-value=8.8 Score=32.32 Aligned_cols=79 Identities=10% Similarity=0.126 Sum_probs=49.0
Q ss_pred EEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCc----hHH
Q 030139 64 VVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT----GGT 139 (182)
Q Consensus 64 ~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitT----G~T 139 (182)
.|++ -.+.-.+|..+|+.||+++..+..++... | +.+++....+.|++|+||-..... =--
T Consensus 7 ~i~~-~~~~~~la~~ia~~lg~~l~~~~~~~Fpd------------G--E~~v~i~~~vrg~dV~iv~s~~~~~nd~lme 71 (320)
T PRK02269 7 KLFA-LSSNKELAEKVAQEIGIELGKSSVRQFSD------------G--EIQVNIEESIRGHHVFILQSTSSPVNDNLME 71 (320)
T ss_pred EEEE-CCCCHHHHHHHHHHhCCceeeeEEEECCC------------C--CEEEEECCCCCCCEEEEEecCCCCccchHHH
Confidence 3444 34446899999999999876553332211 2 222222344789999999775431 123
Q ss_pred HHHHHHHHHhcCCeEEEE
Q 030139 140 LSAAIRLLERVGVHVVEC 157 (182)
Q Consensus 140 l~~~~~~L~~~ga~~v~v 157 (182)
+.-+++.|+.+|++.+.+
T Consensus 72 lll~~~alr~~~a~~i~~ 89 (320)
T PRK02269 72 ILIMVDALKRASAESINV 89 (320)
T ss_pred HHHHHHHHHHhCCCeEEE
Confidence 556778889999987643
No 91
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=86.92 E-value=9.8 Score=31.78 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=47.2
Q ss_pred CCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCchH---HHHHHHHH
Q 030139 70 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGG---TLSAAIRL 146 (182)
Q Consensus 70 ~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~---Tl~~~~~~ 146 (182)
.+.-.+|..+|+.||+|+......+... |+..+.+ ...++|++|+||-.....-. -+.-+++.
T Consensus 9 ~~~~~la~~ia~~lg~~~~~~~~~~F~d------------GE~~v~i--~~~v~g~~V~ivqs~~~~n~~l~elll~~~a 74 (301)
T PRK07199 9 PGNEAAAGRLAAALGVEVGRIELHRFPD------------GESYVRL--DSPVAGRTVVLVCSLDRPDEKLLPLLFAAEA 74 (301)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCC------------CCEEEEE--CCCCCCCEEEEECCCCCCcHHHHHHHHHHHH
Confidence 3446899999999999986553332211 2222222 34478999999988654222 24456677
Q ss_pred HHhcCCeEEEE
Q 030139 147 LERVGVHVVEC 157 (182)
Q Consensus 147 L~~~ga~~v~v 157 (182)
|+++|++.+.+
T Consensus 75 lr~~~a~~i~~ 85 (301)
T PRK07199 75 ARELGARRVGL 85 (301)
T ss_pred HHHcCCCeEEE
Confidence 88999986554
No 92
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=85.98 E-value=10 Score=31.81 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=46.1
Q ss_pred CCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCc-hH---HHHHHHH
Q 030139 70 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GG---TLSAAIR 145 (182)
Q Consensus 70 ~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitT-G~---Tl~~~~~ 145 (182)
.+.-.+|..+|+.||.+......++... | +.+++......|++|+||=..... -. -+.-+++
T Consensus 7 ~~~~~la~~ia~~lg~~~~~~~~~~Fpd------------G--E~~vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~ 72 (309)
T PRK01259 7 NANPELAEKIAKYLGIPLGKASVGRFSD------------G--EISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMID 72 (309)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCC------------C--CEEEEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHH
Confidence 3446899999999999886543222111 2 222222344689999999765322 11 2456678
Q ss_pred HHHhcCCeEEEE
Q 030139 146 LLERVGVHVVEC 157 (182)
Q Consensus 146 ~L~~~ga~~v~v 157 (182)
.+++.|++.+.+
T Consensus 73 alr~~ga~~i~l 84 (309)
T PRK01259 73 ALKRASAGRITA 84 (309)
T ss_pred HHHHcCCceEEE
Confidence 888999986543
No 93
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=85.73 E-value=7.2 Score=32.60 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=43.7
Q ss_pred hHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCc-hHH---HHHHHHHHHhc
Q 030139 75 FGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGT---LSAAIRLLERV 150 (182)
Q Consensus 75 ~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitT-G~T---l~~~~~~L~~~ 150 (182)
+|..+|+.+|+++.....++... | +++++....++|++|+||--.... ... +.-+++.+++.
T Consensus 1 la~~ia~~l~~~l~~~~~~~F~D------------G--E~~vri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~ 66 (304)
T PRK03092 1 LAEEVAKELGVEVTPTTAYDFAN------------G--EIYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRA 66 (304)
T ss_pred CHHHHHHHhCCceeeeEEEECCC------------C--CEEEEECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHc
Confidence 57889999999876553332211 1 223333344789999998875542 222 45677888999
Q ss_pred CCeEEEE
Q 030139 151 GVHVVEC 157 (182)
Q Consensus 151 ga~~v~v 157 (182)
|++.+.+
T Consensus 67 ~a~~i~~ 73 (304)
T PRK03092 67 SAKRITV 73 (304)
T ss_pred CCCeEEE
Confidence 9986654
No 94
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=85.67 E-value=12 Score=31.56 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=47.8
Q ss_pred EEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCch----HH
Q 030139 64 VVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATG----GT 139 (182)
Q Consensus 64 ~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG----~T 139 (182)
.|++- .+.-.+|..+|+.||+|+.....++... |+ .+++......|++|+||=..-... --
T Consensus 8 ~i~~g-~~~~~La~~ia~~lg~~l~~~~~~~Fpd------------GE--~~v~i~~~v~g~~V~iiqs~~~p~nd~lme 72 (319)
T PRK04923 8 LVFSG-NANKPLAQSICKELGVRMGKALVTRFSD------------GE--VQVEIEESVRRQEVFVIQPTCAPSAENLME 72 (319)
T ss_pred EEEEC-CCCHHHHHHHHHHhCCceeeeEEEECCC------------CC--EEEEECCCcCCCeEEEEecCCCCCchHHHH
Confidence 34443 4456899999999999986553332211 22 222223446799999986643221 12
Q ss_pred HHHHHHHHHhcCCeEEEE
Q 030139 140 LSAAIRLLERVGVHVVEC 157 (182)
Q Consensus 140 l~~~~~~L~~~ga~~v~v 157 (182)
+.-+++.++..|++.+.+
T Consensus 73 Ll~~~~alr~~~a~~i~~ 90 (319)
T PRK04923 73 LLVLIDALKRASAASVTA 90 (319)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 445667788999986653
No 95
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=84.90 E-value=12 Score=31.36 Aligned_cols=74 Identities=14% Similarity=0.169 Sum_probs=45.2
Q ss_pred CCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEE-ecccC----chHHHHHHH
Q 030139 70 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIV-DDLVA----TGGTLSAAI 144 (182)
Q Consensus 70 ~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllV-DDvit----TG~Tl~~~~ 144 (182)
.+.-.+|..+|+.+|.++.....++... | +.+++......|+.|+|| -.... .=--+.-++
T Consensus 7 ~~~~~la~~ia~~lg~~~~~~~~~~Fpd------------G--E~~v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~ 72 (308)
T TIGR01251 7 SSNQELAQKVAKNLGLPLGDVEVKRFPD------------G--ELYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMI 72 (308)
T ss_pred CCCHHHHHHHHHHhCCeeeeeEEEECCC------------C--CEEEEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHH
Confidence 3446899999999999887654332211 2 122222334678999888 55431 112345567
Q ss_pred HHHHhcCCeEEEE
Q 030139 145 RLLERVGVHVVEC 157 (182)
Q Consensus 145 ~~L~~~ga~~v~v 157 (182)
+.+++.|++.+.+
T Consensus 73 ~a~r~~ga~~i~~ 85 (308)
T TIGR01251 73 DALKRASAKSITA 85 (308)
T ss_pred HHHHHcCCCeEEE
Confidence 7888999986543
No 96
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=83.82 E-value=19 Score=30.44 Aligned_cols=80 Identities=14% Similarity=0.134 Sum_probs=47.7
Q ss_pred EEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCc-hHH---
Q 030139 64 VVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGT--- 139 (182)
Q Consensus 64 ~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitT-G~T--- 139 (182)
+++-.-.+.-.+|..+|+.+|++...+..++... | +.+++....+.|+.|+||-..... -..
T Consensus 10 ~~i~~~~~~~~la~~ia~~lg~~l~~~~~~~Fpd------------G--E~~v~i~~~v~g~dV~ii~s~~~~~nd~l~e 75 (323)
T PRK02458 10 IKLFSLNSNLEIAEKIAQAAGVPLGKLSSRQFSD------------G--EIMINIEESVRGDDIYIIQSTSFPVNDHLWE 75 (323)
T ss_pred eEEEECCCCHHHHHHHHHHhCCceeeeEEEECCC------------C--CEEEEecCCcCCCeEEEEecCCCCCchHHHH
Confidence 3333345557899999999999886543222211 2 122222334688999998765322 122
Q ss_pred HHHHHHHHHhcCCeEEEE
Q 030139 140 LSAAIRLLERVGVHVVEC 157 (182)
Q Consensus 140 l~~~~~~L~~~ga~~v~v 157 (182)
+..+++.+++.|++.+.+
T Consensus 76 Lll~~~alr~~~a~~i~l 93 (323)
T PRK02458 76 LLIMIDACKRASANTVNV 93 (323)
T ss_pred HHHHHHHHHHcCCceEEE
Confidence 344567778999976543
No 97
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=82.15 E-value=8.6 Score=32.39 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=48.6
Q ss_pred CCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCchH----HHHHHHH
Q 030139 70 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGG----TLSAAIR 145 (182)
Q Consensus 70 ~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~----Tl~~~~~ 145 (182)
.+.-.+|..+|+.||+|+..+..++... +++++.-...++|++|.|+...-.... -+.-+++
T Consensus 11 ~s~~~La~~ia~~l~~~l~~~~~~rF~D--------------GE~~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~id 76 (314)
T COG0462 11 SSNPELAEKIAKRLGIPLGKVEVKRFPD--------------GEIYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMID 76 (314)
T ss_pred CCCHHHHHHHHHHhCCCcccceeEEcCC--------------CcEEEEecccccCCeEEEEeCCCCCcCHHHHHHHHHHH
Confidence 4445899999999999987654332211 222333345588999997766554222 2345678
Q ss_pred HHHhcCCeEEEEE
Q 030139 146 LLERVGVHVVECA 158 (182)
Q Consensus 146 ~L~~~ga~~v~v~ 158 (182)
+++.++|+.|.++
T Consensus 77 A~k~asA~~It~V 89 (314)
T COG0462 77 ALKRASAKRITAV 89 (314)
T ss_pred HHHhcCCceEEEE
Confidence 8899999977654
No 98
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=77.44 E-value=41 Score=28.50 Aligned_cols=81 Identities=11% Similarity=-0.025 Sum_probs=48.1
Q ss_pred EEEeeCCCChhhHHHHHHHh-CCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEecccCchHH---
Q 030139 64 VVAGIEARGFIFGPPIALAI-GAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGT--- 139 (182)
Q Consensus 64 ~Iv~v~~~G~~~a~~la~~l-~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDDvitTG~T--- 139 (182)
.++-.-...-.+|..+|+.+ |+|+.....++... |+..+.+.....+.|++|+||=-.... .-
T Consensus 17 ~~i~~g~~~~~LA~~ia~~l~g~~l~~~~~~~FpD------------GE~~v~v~~~~~vrg~~V~ivqs~~~p-d~lmE 83 (326)
T PLN02297 17 VHLFYCEETEELARKIAAESDAIELGSINWRKFPD------------GFPNLFINNAHGIRGQHVAFLASFSSP-AVIFE 83 (326)
T ss_pred eEEEECCCCHHHHHHHHHHhCCCceeeeEEEECCC------------CCEEEEEcCCCCcCCCeEEEECCCCCC-hHHHH
Confidence 33333445578999999986 89886654332211 222233332344789999998764433 22
Q ss_pred HHHHHHHHHhcCCeEEEE
Q 030139 140 LSAAIRLLERVGVHVVEC 157 (182)
Q Consensus 140 l~~~~~~L~~~ga~~v~v 157 (182)
+.-+++.|++.|++.+.+
T Consensus 84 LLl~~dAlr~~ga~~i~~ 101 (326)
T PLN02297 84 QLSVIYALPKLFVASFTL 101 (326)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 233456678889986544
No 99
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=72.53 E-value=58 Score=28.27 Aligned_cols=38 Identities=11% Similarity=0.125 Sum_probs=25.9
Q ss_pred cccCCCCeEEEEecccC---------------chHHHH---HHHHHHHhcCCeEEEE
Q 030139 119 GAVQAGERALIVDDLVA---------------TGGTLS---AAIRLLERVGVHVVEC 157 (182)
Q Consensus 119 ~~~~~gk~VllVDDvit---------------TG~Tl~---~~~~~L~~~ga~~v~v 157 (182)
...+.|++|+||-.... .-..+. -++++++ +||+.+.+
T Consensus 72 ~~~Vrg~dV~ivqs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ 127 (382)
T PRK06827 72 LESVRGKDIYILQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITV 127 (382)
T ss_pred CCCCCCCeEEEEecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEE
Confidence 34478999999998642 122233 3778889 99986654
No 100
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=70.23 E-value=46 Score=27.13 Aligned_cols=140 Identities=11% Similarity=0.139 Sum_probs=60.9
Q ss_pred ccchHHHHHhhccccCCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHh-C-C
Q 030139 8 AQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAI-G-A 85 (182)
Q Consensus 8 ~~~~~~~~l~~~~r~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l-~-v 85 (182)
..++-++++.+.++...-.. ..+. ++..+.-.|+..+..+. +++...++|+|+++.. +-+..++.++ + +
T Consensus 12 ~~~~~~~gf~~~L~~~g~~~-~~~~-~~~~~a~~d~~~~~~~~----~~l~~~~~DlIi~~gt---~aa~~~~~~~~~~i 82 (294)
T PF04392_consen 12 ALDDIVRGFKDGLKELGYDE-KNVE-IEYKNAEGDPEKLRQIA----RKLKAQKPDLIIAIGT---PAAQALAKHLKDDI 82 (294)
T ss_dssp HHHHHHHHHHHHHHHTT--C-CCEE-EEEEE-TT-HHHHHHHH----HHHCCTS-SEEEEESH---HHHHHHHHH-SS-S
T ss_pred HHHHHHHHHHHHHHHcCCcc-ccEE-EEEecCCCCHHHHHHHH----HHHhcCCCCEEEEeCc---HHHHHHHHhcCCCc
Confidence 34455666666666543222 2332 23344455665544443 4556678999999864 3344444544 4 7
Q ss_pred CeEeeeccCCC-CC---------ceeeeeeeeeccceeEEEEccccCCCCeE-EEEecccCc-hHHHHHHHHHHHhcCCe
Q 030139 86 KFVPMRKPKKL-PG---------EVISEEYSLEYGKDVMEMHVGAVQAGERA-LIVDDLVAT-GGTLSAAIRLLERVGVH 153 (182)
Q Consensus 86 p~~~~rk~~~~-~~---------~~~~~~~~~~~~~~~~~l~~~~~~~gk~V-llVDDvitT-G~Tl~~~~~~L~~~ga~ 153 (182)
|.+++--..-. .+ ...+-......-...+.+-..-.+.-++| +|.|+--++ ......+.+..++.|.+
T Consensus 83 PVVf~~V~dp~~~~l~~~~~~~~~nvTGv~~~~~~~~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~ 162 (294)
T PF04392_consen 83 PVVFCGVSDPVGAGLVDSLDRPGKNVTGVSERPPIEKQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIE 162 (294)
T ss_dssp -EEEECES-TTTTTS-S-SSS--SSEEEEEE---HHHHHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-E
T ss_pred EEEEEeccChhhhhccccccCCCCCEEEEECCcCHHHHHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCE
Confidence 98775431100 00 01110000000001111100112345788 566666553 45566677777778876
Q ss_pred EEE
Q 030139 154 VVE 156 (182)
Q Consensus 154 ~v~ 156 (182)
.+.
T Consensus 163 l~~ 165 (294)
T PF04392_consen 163 LVE 165 (294)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 101
>PRK12342 hypothetical protein; Provisional
Probab=69.81 E-value=20 Score=29.27 Aligned_cols=42 Identities=10% Similarity=0.010 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCCccEEEeeC----CCChhhHHHHHHHhCCCeEe
Q 030139 48 DTIDLFVERYKDKNISVVAGIE----ARGFIFGPPIALAIGAKFVP 89 (182)
Q Consensus 48 ~~~~~la~~~~~~~~d~Iv~v~----~~G~~~a~~la~~l~vp~~~ 89 (182)
..++.|+..++..++|+|++=. ...-..+..+|+.||+|++.
T Consensus 96 ata~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt 141 (254)
T PRK12342 96 DTAKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVIN 141 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEe
Confidence 4556666666655699998843 33346778999999999854
No 102
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=65.54 E-value=33 Score=28.03 Aligned_cols=42 Identities=5% Similarity=0.014 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCccEEEee----CCCChhhHHHHHHHhCCCeEe
Q 030139 48 DTIDLFVERYKDKNISVVAGI----EARGFIFGPPIALAIGAKFVP 89 (182)
Q Consensus 48 ~~~~~la~~~~~~~~d~Iv~v----~~~G~~~a~~la~~l~vp~~~ 89 (182)
..+..|+..++..++|+|++= +...-..+..+|+.||+|++.
T Consensus 99 ~tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt 144 (256)
T PRK03359 99 QTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAIN 144 (256)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCcee
Confidence 455666666665579999884 334446788999999999754
No 103
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=53.98 E-value=19 Score=27.56 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=19.7
Q ss_pred eEEEEecccCchHHHHHHH-HHHHhcCCeEEEEEEE
Q 030139 126 RALIVDDLVATGGTLSAAI-RLLERVGVHVVECACV 160 (182)
Q Consensus 126 ~VllVDDvitTG~Tl~~~~-~~L~~~ga~~v~v~~l 160 (182)
.=+||||++.++.-+..+. ++|.....-.|++.|=
T Consensus 84 ~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cp 119 (174)
T PF07931_consen 84 NNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCP 119 (174)
T ss_dssp -EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--
T ss_pred CCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECC
Confidence 4567899999998777776 6665544444444443
No 104
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=51.32 E-value=38 Score=21.76 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=27.0
Q ss_pred cCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEE
Q 030139 121 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVE 156 (182)
Q Consensus 121 ~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~ 156 (182)
..+++.|++++ .+|.....+...|++.|-..+.
T Consensus 53 ~~~~~~iv~~c---~~g~~a~~~~~~l~~~G~~~v~ 85 (100)
T smart00450 53 LDKDKPVVVYC---RSGNRSAKAAWLLRELGFKNVY 85 (100)
T ss_pred CCCCCeEEEEe---CCCcHHHHHHHHHHHcCCCceE
Confidence 35688899998 6788889999999999987633
No 105
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=51.18 E-value=43 Score=21.20 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=26.7
Q ss_pred cCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEE
Q 030139 121 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVE 156 (182)
Q Consensus 121 ~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~ 156 (182)
..+++.|+++++- |.....+...|++.|-..+.
T Consensus 47 ~~~~~~vv~~c~~---~~~a~~~~~~l~~~G~~~v~ 79 (89)
T cd00158 47 LDKDKPIVVYCRS---GNRSARAAKLLRKAGGTNVY 79 (89)
T ss_pred cCCCCeEEEEeCC---CchHHHHHHHHHHhCcccEE
Confidence 3578889999887 77888899999999866544
No 106
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=48.98 E-value=57 Score=27.28 Aligned_cols=46 Identities=20% Similarity=0.136 Sum_probs=40.3
Q ss_pred ccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecCC
Q 030139 120 AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 165 (182)
Q Consensus 120 ~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~ 165 (182)
....|++|+||--=-........+.++|+++|+.+.+.+.+-+.+.
T Consensus 79 g~L~g~~V~vV~~p~a~~~~~~~v~~~L~~AGA~v~g~i~lt~~~~ 124 (308)
T PF11382_consen 79 GRLTGRSVAVVTLPGADDEDVDAVRELLEQAGATVTGRITLTDKFL 124 (308)
T ss_pred CccCCCEEEEEEcCCCChHHHHHHHHHHHHCCCeEEEEEEEchhhc
Confidence 3478999999997777889999999999999999999998887663
No 107
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=47.45 E-value=41 Score=22.26 Aligned_cols=32 Identities=19% Similarity=0.060 Sum_probs=24.8
Q ss_pred CCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEE
Q 030139 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVE 156 (182)
Q Consensus 122 ~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~ 156 (182)
.++++|+++++ +|.....++..|+..|-..+.
T Consensus 54 ~~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~ 85 (96)
T cd01529 54 GRATRYVLTCD---GSLLARFAAQELLALGGKPVA 85 (96)
T ss_pred CCCCCEEEEeC---ChHHHHHHHHHHHHcCCCCEE
Confidence 46778999986 677778888889999986543
No 108
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=44.84 E-value=57 Score=24.34 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCccEEEeeC-CCChhhHHHHHHHhCCCeE
Q 030139 47 RDTIDLFVERYKDKNISVVAGIE-ARGFIFGPPIALAIGAKFV 88 (182)
Q Consensus 47 ~~~~~~la~~~~~~~~d~Iv~v~-~~G~~~a~~la~~l~vp~~ 88 (182)
...++.|++.+.+.++++|+... ..|--++..+|..||.|++
T Consensus 69 ~~~a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~v 111 (168)
T cd01715 69 EPYAPALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLI 111 (168)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCce
Confidence 35556666655555688877765 5677999999999999874
No 109
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=44.64 E-value=46 Score=21.72 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=27.3
Q ss_pred cCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEE
Q 030139 121 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVE 156 (182)
Q Consensus 121 ~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~ 156 (182)
..+++.|+++.. +|.+...+...|+..|-..+.
T Consensus 53 ~~~~~~ivv~c~---~g~~s~~a~~~l~~~G~~~v~ 85 (96)
T cd01444 53 LDRDRPVVVYCY---HGNSSAQLAQALREAGFTDVR 85 (96)
T ss_pred cCCCCCEEEEeC---CCChHHHHHHHHHHcCCceEE
Confidence 356788999988 899999999999999987653
No 110
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=42.62 E-value=1.4e+02 Score=24.57 Aligned_cols=42 Identities=19% Similarity=0.109 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCccEEEee----CCCChhhHHHHHHHhCCCeEe
Q 030139 48 DTIDLFVERYKDKNISVVAGI----EARGFIFGPPIALAIGAKFVP 89 (182)
Q Consensus 48 ~~~~~la~~~~~~~~d~Iv~v----~~~G~~~a~~la~~l~vp~~~ 89 (182)
..++.|+..++..++|+|++= +...-..+..+|+.||.|++.
T Consensus 98 ~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t 143 (260)
T COG2086 98 ATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVT 143 (260)
T ss_pred HHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceee
Confidence 556666666666677877763 333336778999999999864
No 111
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.05 E-value=68 Score=19.73 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=26.5
Q ss_pred eEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEec
Q 030139 126 RALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIEL 163 (182)
Q Consensus 126 ~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~ 163 (182)
+++|+.++ ||.-+...+..+++.|. .+-..|+++.
T Consensus 2 ~~ll~~g~--~~~el~~~l~~~r~~~~-~~~~kAvlT~ 36 (58)
T PF12646_consen 2 EFLLFSGF--SGEELDKFLDALRKAGI-PIPLKAVLTP 36 (58)
T ss_pred CEEEECCC--CHHHHHHHHHHHHHcCC-CcceEEEECC
Confidence 46777777 88899999999999999 4445555443
No 112
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=40.92 E-value=62 Score=29.90 Aligned_cols=45 Identities=18% Similarity=0.044 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCCCccEEEeeCCCChhh-HHHHHHHhCC--CeEe
Q 030139 45 AFRDTIDLFVERYKDKNISVVAGIEARGFIF-GPPIALAIGA--KFVP 89 (182)
Q Consensus 45 ~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~-a~~la~~l~v--p~~~ 89 (182)
.+..+.+.+.+.+...++|++|.++.-||++ ....++..|+ |.++
T Consensus 294 ~l~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviy 341 (608)
T PRK01021 294 KLWYRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVH 341 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEE
Confidence 3344555556666667899999999999965 3344455685 7654
No 113
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=39.15 E-value=65 Score=25.04 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCccEEEeeCCC----ChhhHHHHHHHhCCCeE
Q 030139 48 DTIDLFVERYKDKNISVVAGIEAR----GFIFGPPIALAIGAKFV 88 (182)
Q Consensus 48 ~~~~~la~~~~~~~~d~Iv~v~~~----G~~~a~~la~~l~vp~~ 88 (182)
..+..+++.+.+.++++|+..... |-.++..+|..||.+++
T Consensus 95 ~~a~al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lv 139 (202)
T cd01714 95 ATAKALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQI 139 (202)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCcc
Confidence 444555554444468888887654 77999999999999874
No 114
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=37.32 E-value=91 Score=26.66 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=26.7
Q ss_pred HHhcCCCccEEEeeCCCChhhHH-HHHHHhCCCeEee
Q 030139 55 ERYKDKNISVVAGIEARGFIFGP-PIALAIGAKFVPM 90 (182)
Q Consensus 55 ~~~~~~~~d~Iv~v~~~G~~~a~-~la~~l~vp~~~~ 90 (182)
+.+++.++|+|+++..-|+++.- .-|+.+|+|+++.
T Consensus 83 ~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 83 QLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 44556789999999988888432 3455679998875
No 115
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=36.59 E-value=1.2e+02 Score=22.14 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=35.5
Q ss_pred cCHHHHHHHHHHHHHHhcCCCccEEEeeCCCC-hhhHHHHHHHhCCC
Q 030139 41 LDTKAFRDTIDLFVERYKDKNISVVAGIEARG-FIFGPPIALAIGAK 86 (182)
Q Consensus 41 ~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G-~~~a~~la~~l~vp 86 (182)
.+++..+.+++.+++.++...+-++.|....| -.++..+++.+|.+
T Consensus 3 ~s~~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 3 PDEKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 46788889999999888765665666766555 58999999999864
No 116
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=35.44 E-value=78 Score=23.79 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCCccEEEeeC-CCChhhHHHHHHHhCCCeEe
Q 030139 48 DTIDLFVERYKDKNISVVAGIE-ARGFIFGPPIALAIGAKFVP 89 (182)
Q Consensus 48 ~~~~~la~~~~~~~~d~Iv~v~-~~G~~~a~~la~~l~vp~~~ 89 (182)
..++.|++.+++.++++|+... ..|-.++..+|..||.|++.
T Consensus 78 ~~a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vs 120 (181)
T cd01985 78 ATAKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQIS 120 (181)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcce
Confidence 4455555555555688777765 56778999999999998743
No 117
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=35.20 E-value=74 Score=20.91 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=20.6
Q ss_pred CeEEEEecccCchHHHHHHHHHHHhc
Q 030139 125 ERALIVDDLVATGGTLSAAIRLLERV 150 (182)
Q Consensus 125 k~VllVDDvitTG~Tl~~~~~~L~~~ 150 (182)
..+.+++|...+=..+.++++.+++.
T Consensus 12 ~~~~vi~D~ahNp~s~~a~l~~l~~~ 37 (91)
T PF02875_consen 12 NGPTVIDDYAHNPDSIRALLEALKEL 37 (91)
T ss_dssp TTEEEEEET--SHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 34777778999999999999999987
No 118
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=34.15 E-value=1.1e+02 Score=20.58 Aligned_cols=26 Identities=42% Similarity=0.547 Sum_probs=17.3
Q ss_pred CCCeEEEEecccCchHHHHHHHHHHHhcC
Q 030139 123 AGERALIVDDLVATGGTLSAAIRLLERVG 151 (182)
Q Consensus 123 ~gk~VllVDDvitTG~Tl~~~~~~L~~~g 151 (182)
.+.+|++||| +-.......+.|...|
T Consensus 4 ~~~~vLivdD---~~~~~~~~~~~l~~~g 29 (130)
T COG0784 4 SGLRVLVVDD---EPVNRRLLKRLLEDLG 29 (130)
T ss_pred CCcEEEEEcC---CHHHHHHHHHHHHHcC
Confidence 4678999999 4444445555566666
No 119
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=33.24 E-value=40 Score=30.96 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=23.3
Q ss_pred cEEEeeCCCC-hhhHHHHHHHhCCCeEee
Q 030139 63 SVVAGIEARG-FIFGPPIALAIGAKFVPM 90 (182)
Q Consensus 63 d~Iv~v~~~G-~~~a~~la~~l~vp~~~~ 90 (182)
-+++|+|..| -.+|.++|-..++||.+.
T Consensus 340 VLLvGPPGTGKTlLARAvAGEA~VPFF~~ 368 (752)
T KOG0734|consen 340 VLLVGPPGTGKTLLARAVAGEAGVPFFYA 368 (752)
T ss_pred eEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence 3788888766 578999999999999875
No 120
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=32.90 E-value=3.1e+02 Score=23.32 Aligned_cols=50 Identities=12% Similarity=0.015 Sum_probs=32.8
Q ss_pred EechhhhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHh-CCCeEee
Q 030139 34 QDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAI-GAKFVPM 90 (182)
Q Consensus 34 ~d~~~l~~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l-~vp~~~~ 90 (182)
++..+--.++..+..+ ++.+....+|+|+++.. |.|+.+..+. ++|.++.
T Consensus 65 i~~~na~~~~~~a~~i----arql~~~~~dviv~i~t---p~Aq~~~s~~~~iPVV~a 115 (322)
T COG2984 65 IDYQNAQGDLGTAAQI----ARQLVGDKPDVIVAIAT---PAAQALVSATKTIPVVFA 115 (322)
T ss_pred EEeecCCCChHHHHHH----HHHhhcCCCcEEEecCC---HHHHHHHHhcCCCCEEEE
Confidence 3455555566655444 44455667899998865 7777777765 5788764
No 121
>PRK13584 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=32.53 E-value=21 Score=28.24 Aligned_cols=12 Identities=58% Similarity=0.689 Sum_probs=10.0
Q ss_pred ecccCchHHHHH
Q 030139 131 DDLVATGGTLSA 142 (182)
Q Consensus 131 DDvitTG~Tl~~ 142 (182)
=|++.||+||++
T Consensus 149 vDiv~TG~TLr~ 160 (204)
T PRK13584 149 VDIVQTGTTLKA 160 (204)
T ss_pred EEEECccHHHHH
Confidence 389999999873
No 122
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=32.15 E-value=40 Score=24.92 Aligned_cols=42 Identities=24% Similarity=0.240 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCCccEEEeeC-CCChhhHHHHHHHhCCCeEe
Q 030139 48 DTIDLFVERYKDKNISVVAGIE-ARGFIFGPPIALAIGAKFVP 89 (182)
Q Consensus 48 ~~~~~la~~~~~~~~d~Iv~v~-~~G~~~a~~la~~l~vp~~~ 89 (182)
..+..|++.+++.++++|+... ..|--++..+|..||.|++.
T Consensus 77 ~~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~ 119 (164)
T PF01012_consen 77 AYADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVT 119 (164)
T ss_dssp HHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccc
Confidence 3444555444445677777665 46667999999999999854
No 123
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=31.60 E-value=1.6e+02 Score=24.76 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=23.8
Q ss_pred HHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEe
Q 030139 55 ERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP 89 (182)
Q Consensus 55 ~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~ 89 (182)
+.+...++|+||.-. ....+..+|+.+|+|++.
T Consensus 86 ~~~~~~~pDlVi~d~--~~~~~~~~A~~~giP~v~ 118 (392)
T TIGR01426 86 EAYKGDRPDLIVYDI--ASWTGRLLARKWDVPVIS 118 (392)
T ss_pred HHhcCCCCCEEEECC--ccHHHHHHHHHhCCCEEE
Confidence 334446789997755 345788899999999754
No 124
>PF01634 HisG: ATP phosphoribosyltransferase; InterPro: IPR013820 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. ATP phosphoribosyltransferase is found in two distinct forms: a long form containing two catalytic domains and a C-terminal regulatory domain, and a short form in which the regulatory domain is missing. The long form is catalytically competent, but in organisms with the short form, a histidyl-tRNA synthetase paralogue, HisZ, is required for enzyme activity []. This entry represents the catalytic region of this enzyme. The structures of the long form enzymes from Escherichia coli (P60757 from SWISSPROT) and Mycobacterium tuberculosis (P60759 from SWISSPROT) have been determined [, ]. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. The two catalytic domains are linked by a two-stranded beta-sheet and togther form a "periplasmic binding protein fold". A crevice between these domains contains the active site. The C-terminal domain is not directly involved in catalysis but appears to be involved the formation of hexamers, induced by the binding of inhibitors such as histidine to the enzyme, thus regulating activity.; GO: 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1VE4_A 2VD3_B 1NH7_A 1NH8_A 1Z7N_G 1Z7M_E 1O64_A 1O63_A 1USY_F 1Q1K_A ....
Probab=31.40 E-value=23 Score=26.87 Aligned_cols=10 Identities=60% Similarity=0.840 Sum_probs=9.2
Q ss_pred cccCchHHHH
Q 030139 132 DLVATGGTLS 141 (182)
Q Consensus 132 DvitTG~Tl~ 141 (182)
|++.||+||+
T Consensus 112 Div~TG~TLr 121 (163)
T PF01634_consen 112 DIVETGTTLR 121 (163)
T ss_dssp EEESSSHHHH
T ss_pred EeccCcHHHH
Confidence 8999999987
No 125
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=31.22 E-value=1.2e+02 Score=20.14 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=24.2
Q ss_pred CCCCeEEEEecccCchHHHHHHHHHHHhcCCeEE
Q 030139 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVV 155 (182)
Q Consensus 122 ~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v 155 (182)
.+++.|+++.. +|..-..++..|++.|...+
T Consensus 59 ~~~~~ivvyC~---~G~rs~~a~~~L~~~G~~~v 89 (101)
T cd01518 59 LKGKKVLMYCT---GGIRCEKASAYLKERGFKNV 89 (101)
T ss_pred cCCCEEEEECC---CchhHHHHHHHHHHhCCcce
Confidence 56788999885 67777778888999998654
No 126
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed
Probab=31.04 E-value=24 Score=28.14 Aligned_cols=11 Identities=64% Similarity=0.881 Sum_probs=9.6
Q ss_pred cccCchHHHHH
Q 030139 132 DLVATGGTLSA 142 (182)
Q Consensus 132 DvitTG~Tl~~ 142 (182)
|++.||+||++
T Consensus 160 DivsTG~TLr~ 170 (215)
T PRK01686 160 DIVETGNTLRA 170 (215)
T ss_pred EeecChHHHHH
Confidence 89999999873
No 127
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=30.43 E-value=1.3e+02 Score=21.18 Aligned_cols=86 Identities=13% Similarity=0.197 Sum_probs=44.6
Q ss_pred EEEeeCCCC-hhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccC---CCCeEEEEecccCchHH
Q 030139 64 VVAGIEARG-FIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQ---AGERALIVDDLVATGGT 139 (182)
Q Consensus 64 ~Iv~v~~~G-~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~gk~VllVDDvitTG~T 139 (182)
+++|++..| -.++..+|+.++.++..+.-....+.......+... .....+..+.+. +...++++|++=..-.+
T Consensus 3 lL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~ 80 (139)
T PF07728_consen 3 LLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAMRKGGILVLDEINRAPPE 80 (139)
T ss_dssp EEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTHHEEEEEEESSCGG--HH
T ss_pred EEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec--ccccccccccccccccceeEEEECCcccCCHH
Confidence 567887666 489999999998888665432211111111112111 111222223222 34679999998876666
Q ss_pred HHHHHHHHHhcC
Q 030139 140 LSAAIRLLERVG 151 (182)
Q Consensus 140 l~~~~~~L~~~g 151 (182)
+...+.-+.+.+
T Consensus 81 v~~~L~~ll~~~ 92 (139)
T PF07728_consen 81 VLESLLSLLEER 92 (139)
T ss_dssp HHHTTHHHHSSS
T ss_pred HHHHHHHHHhhC
Confidence 666665554443
No 128
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=29.33 E-value=1.2e+02 Score=26.07 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=26.3
Q ss_pred CCccEEEeeCCCC-hhhHHHHHHHhCCCeEee
Q 030139 60 KNISVVAGIEARG-FIFGPPIALAIGAKFVPM 90 (182)
Q Consensus 60 ~~~d~Iv~v~~~G-~~~a~~la~~l~vp~~~~ 90 (182)
.+.|+|+|+-.|- +-.|..+|..+|+|++.+
T Consensus 83 ~~~d~vIGVGGGk~iD~aK~~A~~~~~pfIsv 114 (360)
T COG0371 83 DGADVVIGVGGGKTIDTAKAAAYRLGLPFISV 114 (360)
T ss_pred cCCCEEEEecCcHHHHHHHHHHHHcCCCEEEe
Confidence 4689999998666 479999999999999875
No 129
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=29.31 E-value=64 Score=30.66 Aligned_cols=63 Identities=16% Similarity=0.366 Sum_probs=38.3
Q ss_pred CCCceEEechhhhcCHHHHHHHHHHHHH--HhcC-----CCccEEEeeCCCCh-hhHHHHHHHhCCCeEee
Q 030139 28 KPGIMFQDITTLLLDTKAFRDTIDLFVE--RYKD-----KNISVVAGIEARGF-IFGPPIALAIGAKFVPM 90 (182)
Q Consensus 28 ~~~~~~~d~~~l~~~~~~~~~~~~~la~--~~~~-----~~~d~Iv~v~~~G~-~~a~~la~~l~vp~~~~ 90 (182)
..++.|.|...+=.-...+.++...|-. +|.+ .+=-+++|+|..|- .+|.++|-..|+||..+
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~sv 375 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSV 375 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeee
Confidence 3456676766443333344444444321 2221 12238899998775 78999999999999765
No 130
>PRK04195 replication factor C large subunit; Provisional
Probab=29.21 E-value=4e+02 Score=23.53 Aligned_cols=110 Identities=15% Similarity=0.239 Sum_probs=59.1
Q ss_pred chhhhcCHHHHHHHHHHHHHHhcC--CCccEEEeeCCCCh-hhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccce
Q 030139 36 ITTLLLDTKAFRDTIDLFVERYKD--KNISVVAGIEARGF-IFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKD 112 (182)
Q Consensus 36 ~~~l~~~~~~~~~~~~~la~~~~~--~~~d~Iv~v~~~G~-~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~ 112 (182)
+..+..+....+.+...+.....+ ...-++.|++..|= .+|..+|..++.++..+............ . .. .
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~-~----~i-~ 86 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIE-R----VA-G 86 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHH-H----HH-H
Confidence 445677777776666666544332 24457788887774 78999999998776554211000000000 0 00 0
Q ss_pred eEEEEccccC-CCCeEEEEecc--cCc-h--HHHHHHHHHHHhcCC
Q 030139 113 VMEMHVGAVQ-AGERALIVDDL--VAT-G--GTLSAAIRLLERVGV 152 (182)
Q Consensus 113 ~~~l~~~~~~-~gk~VllVDDv--itT-G--~Tl~~~~~~L~~~ga 152 (182)
... ....+. .+++|||+||+ ++. + +.+.++.+.+++.+.
T Consensus 87 ~~~-~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~ 131 (482)
T PRK04195 87 EAA-TSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQ 131 (482)
T ss_pred Hhh-ccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCC
Confidence 000 001111 35789999987 322 1 446777777776543
No 131
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=29.08 E-value=1.2e+02 Score=24.81 Aligned_cols=33 Identities=36% Similarity=0.535 Sum_probs=27.7
Q ss_pred CCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEE
Q 030139 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECA 158 (182)
Q Consensus 122 ~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~ 158 (182)
.+|++|+|+ -+|++-++++..|.+.|+..+.++
T Consensus 123 ~~~k~vlvl----GaGGaarai~~aL~~~G~~~i~I~ 155 (282)
T TIGR01809 123 LAGFRGLVI----GAGGTSRAAVYALASLGVTDITVI 155 (282)
T ss_pred cCCceEEEE----cCcHHHHHHHHHHHHcCCCeEEEE
Confidence 468899865 899999999999999998876554
No 132
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=28.85 E-value=1.2e+02 Score=22.69 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=18.6
Q ss_pred HHHHHHhcCCCccEEEeeCCCCh-hhHHHHHHHhCCCeEeee
Q 030139 51 DLFVERYKDKNISVVAGIEARGF-IFGPPIALAIGAKFVPMR 91 (182)
Q Consensus 51 ~~la~~~~~~~~d~Iv~v~~~G~-~~a~~la~~l~vp~~~~r 91 (182)
+.+++.+.+.+++.|.++|.+.. ++-..+.+.-+++++..|
T Consensus 4 ~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~v~~r 45 (164)
T cd07039 4 DVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVR 45 (164)
T ss_pred HHHHHHHHHCCCCEEEEcCCCchHHHHHHHhhcCCCeEEEeC
Confidence 34444444555666666665432 333333322234444443
No 133
>PRK13583 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=28.74 E-value=26 Score=28.19 Aligned_cols=11 Identities=55% Similarity=0.776 Sum_probs=9.7
Q ss_pred cccCchHHHHH
Q 030139 132 DLVATGGTLSA 142 (182)
Q Consensus 132 DvitTG~Tl~~ 142 (182)
|++.||+||++
T Consensus 177 DivsTG~TLr~ 187 (228)
T PRK13583 177 DITSTGETLRA 187 (228)
T ss_pred hhhchhHHHHH
Confidence 89999999873
No 134
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=27.68 E-value=35 Score=25.38 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=27.6
Q ss_pred cccCchHHHHHHHHHHHhcCCeEEEEEEEEecCCcccccccC
Q 030139 132 DLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG 173 (182)
Q Consensus 132 DvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~~~~~~~~l~ 173 (182)
|...+...+..+.+.|+.+|++.+ +.+... .+.|.++|.
T Consensus 100 Dl~~~~~~i~~a~~~L~~aG~~~i--f~vS~~-~~eGi~eL~ 138 (143)
T PF10662_consen 100 DLPSDDANIERAKKWLKNAGVKEI--FEVSAV-TGEGIEELK 138 (143)
T ss_pred cCccchhhHHHHHHHHHHcCCCCe--EEEECC-CCcCHHHHH
Confidence 566677889999999999999976 333222 345666654
No 135
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=27.40 E-value=1.1e+02 Score=25.57 Aligned_cols=37 Identities=30% Similarity=0.385 Sum_probs=27.1
Q ss_pred cCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEec
Q 030139 121 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIEL 163 (182)
Q Consensus 121 ~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~ 163 (182)
.-.|.++|+||| +.|-=..++++.|-..| .++.++..
T Consensus 199 V~~g~r~Lv~D~--~~GLv~aav~eRmgg~G----~i~~~~~~ 235 (299)
T PF04189_consen 199 VHAGGRVLVVDD--CGGLVVAAVAERMGGSG----NIITLHHG 235 (299)
T ss_pred CCCCCeEEEEeC--CCChHHHHHHHHhCCCc----eEEEEeeC
Confidence 457999999999 77877777777776666 34455554
No 136
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=26.93 E-value=1.5e+02 Score=19.62 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=24.5
Q ss_pred CCCeEEEEecccCchHHHHHHHHHHHhcCCeEEE
Q 030139 123 AGERALIVDDLVATGGTLSAAIRLLERVGVHVVE 156 (182)
Q Consensus 123 ~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~ 156 (182)
+++.|+++.+ +|.....+...|.+.|...+.
T Consensus 57 ~~~~vv~~c~---~g~rs~~~~~~l~~~G~~~v~ 87 (101)
T cd01528 57 PDKDIVVLCH---HGGRSMQVAQWLLRQGFENVY 87 (101)
T ss_pred CCCeEEEEeC---CCchHHHHHHHHHHcCCccEE
Confidence 4778999876 587888888899999987554
No 137
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=26.90 E-value=29 Score=28.96 Aligned_cols=19 Identities=42% Similarity=0.609 Sum_probs=13.7
Q ss_pred ecccCchHHHHHHHHHHHhcCCeEEE
Q 030139 131 DDLVATGGTLSAAIRLLERVGVHVVE 156 (182)
Q Consensus 131 DDvitTG~Tl~~~~~~L~~~ga~~v~ 156 (182)
=|+++||+||+ ..|-+++.
T Consensus 160 vDivsTG~TLk-------aNgL~~id 178 (290)
T COG0040 160 VDIVSTGTTLK-------ANGLKEIE 178 (290)
T ss_pred EEeecCCHhHH-------HCCCEEEE
Confidence 38999999987 45555543
No 138
>PRK13947 shikimate kinase; Provisional
Probab=26.78 E-value=72 Score=23.40 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=21.1
Q ss_pred EEEeeCC-CChhhHHHHHHHhCCCeEe
Q 030139 64 VVAGIEA-RGFIFGPPIALAIGAKFVP 89 (182)
Q Consensus 64 ~Iv~v~~-~G~~~a~~la~~l~vp~~~ 89 (182)
+++|++. |+-.+|..+|+.||.|++.
T Consensus 5 ~l~G~~GsGKst~a~~La~~lg~~~id 31 (171)
T PRK13947 5 VLIGFMGTGKTTVGKRVATTLSFGFID 31 (171)
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 5678775 5568999999999999865
No 139
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=26.74 E-value=96 Score=22.24 Aligned_cols=37 Identities=22% Similarity=0.413 Sum_probs=30.4
Q ss_pred cCCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEecC
Q 030139 121 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELP 164 (182)
Q Consensus 121 ~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~~~ 164 (182)
..+|++|+|+ -+|++-+.++..|.+.|++.+.+ .+|.
T Consensus 9 ~l~~~~vlvi----GaGg~ar~v~~~L~~~g~~~i~i---~nRt 45 (135)
T PF01488_consen 9 DLKGKRVLVI----GAGGAARAVAAALAALGAKEITI---VNRT 45 (135)
T ss_dssp TGTTSEEEEE----SSSHHHHHHHHHHHHTTSSEEEE---EESS
T ss_pred CcCCCEEEEE----CCHHHHHHHHHHHHHcCCCEEEE---EECC
Confidence 3679999975 78999999999999999997654 3554
No 140
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=26.37 E-value=1.5e+02 Score=25.68 Aligned_cols=39 Identities=26% Similarity=0.287 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCCccEEEeeCCCChhh--HHHHHHHhCCC
Q 030139 47 RDTIDLFVERYKDKNISVVAGIEARGFIF--GPPIALAIGAK 86 (182)
Q Consensus 47 ~~~~~~la~~~~~~~~d~Iv~v~~~G~~~--a~~la~~l~vp 86 (182)
..+.+.+.+.+...++|++|.++.-||++ |. .++..|++
T Consensus 68 ~~~~~~~~~~~~~~~pd~vIlID~pgFNlrlak-~lk~~~~~ 108 (373)
T PF02684_consen 68 KRLFRKLVERIKEEKPDVVILIDYPGFNLRLAK-KLKKRGIP 108 (373)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHH-HHHHhCCC
Confidence 34444555666667999999999999964 33 33345666
No 141
>TIGR00070 hisG ATP phosphoribosyltransferase. Members of this family from B. subtilis, Aquifex aeolicus, and Synechocystis PCC6803 (and related taxa) lack the C-terminal third of the sequence. The sole homolog from Archaeoglobus fulgidus lacks the N-terminal 50 residues (as reported) and is otherwise atypical of the rest of the family. This model excludes the C-terminal extension.
Probab=26.22 E-value=32 Score=26.64 Aligned_cols=13 Identities=46% Similarity=0.680 Sum_probs=10.7
Q ss_pred EecccCchHHHHH
Q 030139 130 VDDLVATGGTLSA 142 (182)
Q Consensus 130 VDDvitTG~Tl~~ 142 (182)
+=|++.||+|+++
T Consensus 152 IvDiv~TG~TL~~ 164 (182)
T TIGR00070 152 IVDIVSTGTTLRE 164 (182)
T ss_pred EEEEeCCHHHHHH
Confidence 3379999999986
No 142
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=25.94 E-value=98 Score=23.06 Aligned_cols=42 Identities=21% Similarity=0.421 Sum_probs=23.4
Q ss_pred HHHHHHHhcCCCccEEEeeCCCCh-hhHHHHHHHhCCCeEeee
Q 030139 50 IDLFVERYKDKNISVVAGIEARGF-IFGPPIALAIGAKFVPMR 91 (182)
Q Consensus 50 ~~~la~~~~~~~~d~Iv~v~~~G~-~~a~~la~~l~vp~~~~r 91 (182)
++.+++.+.+.+++.+.++|..+. ++...+...-++.++..|
T Consensus 4 ~~~l~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~~~i~~i~~~ 46 (172)
T PF02776_consen 4 AEALAEALKANGVTHVFGVPGSGNLPLLDALEKSPGIRFIPVR 46 (172)
T ss_dssp HHHHHHHHHHTT-SEEEEE--GGGHHHHHHHHHTTTSEEEE-S
T ss_pred HHHHHHHHHHCCCeEEEEEeChhHhHHHHHhhhhcceeeeccc
Confidence 455666666677888888887764 455555544356665554
No 143
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=25.91 E-value=1.4e+02 Score=18.87 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=30.5
Q ss_pred cCCCCeEEEEecccCchHHHHHHHHHHHhcCC
Q 030139 121 VQAGERALIVDDLVATGGTLSAAIRLLERVGV 152 (182)
Q Consensus 121 ~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga 152 (182)
+..|.+++=|++.-.++.|..++.+++++.+.
T Consensus 43 l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~ 74 (81)
T PF00595_consen 43 LKVGDRILEINGQSVRGMSHDEVVQLLKSASN 74 (81)
T ss_dssp SSTTEEEEEETTEESTTSBHHHHHHHHHHSTS
T ss_pred cchhhhhheeCCEeCCCCCHHHHHHHHHCCCC
Confidence 68899999999999999999999999999986
No 144
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=25.76 E-value=4.3e+02 Score=22.70 Aligned_cols=106 Identities=14% Similarity=0.173 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHHhcCCCccEEEeeCCCChh--hHHHHHHHhCCCeEeeecc-CCCCCceeeeeeee-eccceeEEEE
Q 030139 42 DTKAFRDTIDLFVERYKDKNISVVAGIEARGFI--FGPPIALAIGAKFVPMRKP-KKLPGEVISEEYSL-EYGKDVMEMH 117 (182)
Q Consensus 42 ~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~--~a~~la~~l~vp~~~~rk~-~~~~~~~~~~~~~~-~~~~~~~~l~ 117 (182)
+++.+...-+.+-+. ...+++.|++++.||++ .-...|..+|+|++..--- |-.|+-.-. .+.. ......+.+.
T Consensus 77 ~g~e~~ra~e~~~~~-~~k~v~ai~s~EiGG~Ns~ip~v~aa~~g~PvVD~DgmGRAfPElqMt-Tf~~~g~~~tPlvi~ 154 (357)
T COG3535 77 NGDEAIRAFEVLEDY-LGKPVDAIISIEIGGINSLIPLVVAAQLGLPVVDGDGMGRAFPELQMT-TFYLHGLPATPLVIC 154 (357)
T ss_pred CcHHHHHHHHHHHHH-hCCceeEEEEeecCCcchhHHHHHHHhcCCceecCCcccccCcceEEE-EEEEcCCCCCceEEE
Confidence 445445555555443 35689999999999983 3334566789999865321 111211000 1100 0011112221
Q ss_pred ccccCCCCeEEEEecccCchHHHHHHHHHHHhcCCeE
Q 030139 118 VGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHV 154 (182)
Q Consensus 118 ~~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~ 154 (182)
..+|.++++ -.++...+-+-+....-+.|...
T Consensus 155 ---d~~gn~~i~--e~v~n~w~ERiAR~~tv~~GG~~ 186 (357)
T COG3535 155 ---DERGNRVII--ETVSNKWAERIARAATVEMGGSA 186 (357)
T ss_pred ---ecCCCEEEE--EeecchhHHHHHHHHHHHcCCeE
Confidence 145655555 88899999999999999999763
No 145
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=25.57 E-value=2.2e+02 Score=24.92 Aligned_cols=51 Identities=24% Similarity=0.415 Sum_probs=35.7
Q ss_pred hcCHHHHHHHHHHHHHHhcCC----CccEEEeeCCCC-hhhHHHHHHHhC--CCeEee
Q 030139 40 LLDTKAFRDTIDLFVERYKDK----NISVVAGIEARG-FIFGPPIALAIG--AKFVPM 90 (182)
Q Consensus 40 ~~~~~~~~~~~~~la~~~~~~----~~d~Iv~v~~~G-~~~a~~la~~l~--vp~~~~ 90 (182)
+......+..+-.+.+.+++. +.=+++|+|..| -.+|.++|+.|| +||..+
T Consensus 26 lVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 26 LVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp EES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred ccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 345667778888888777653 345888999777 489999999998 788764
No 146
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=25.33 E-value=1.7e+02 Score=19.20 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=23.3
Q ss_pred CCCCeEEEEecccCchHHHHHHHHHHHhcCCe
Q 030139 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVH 153 (182)
Q Consensus 122 ~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~ 153 (182)
.+++.|+++ ..+|.....+...|++.|..
T Consensus 59 ~~~~~ivv~---C~~G~rs~~aa~~L~~~G~~ 87 (100)
T cd01523 59 PDDQEVTVI---CAKEGSSQFVAELLAERGYD 87 (100)
T ss_pred CCCCeEEEE---cCCCCcHHHHHHHHHHcCce
Confidence 467778876 45888888899999999986
No 147
>PF14502 HTH_41: Helix-turn-helix domain
Probab=25.21 E-value=1.1e+02 Score=18.34 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=17.4
Q ss_pred CchHHHHHHHHHHHhcCCeEE
Q 030139 135 ATGGTLSAAIRLLERVGVHVV 155 (182)
Q Consensus 135 tTG~Tl~~~~~~L~~~ga~~v 155 (182)
.+=+|+..+++.|++.||..+
T Consensus 18 vs~GtiQ~Alk~Le~~gaI~L 38 (48)
T PF14502_consen 18 VSRGTIQNALKFLEENGAIKL 38 (48)
T ss_pred cchhHHHHHHHHHHHCCcEEe
Confidence 455799999999999998653
No 148
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=25.15 E-value=25 Score=20.48 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=16.3
Q ss_pred cccCchHHHHHHHHHHHhc
Q 030139 132 DLVATGGTLSAAIRLLERV 150 (182)
Q Consensus 132 DvitTG~Tl~~~~~~L~~~ 150 (182)
...|.|.|+.++.+.++++
T Consensus 23 g~~t~G~t~eea~~~~~ea 41 (48)
T PF03681_consen 23 GCFTQGDTLEEALENAKEA 41 (48)
T ss_dssp TCEEEESSHHHHHHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHHH
Confidence 5789999999999988764
No 149
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=24.79 E-value=1.9e+02 Score=24.64 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=21.7
Q ss_pred CCccEEEeeCCCChhh--HHHHHHHh--CCCeEe
Q 030139 60 KNISVVAGIEARGFIF--GPPIALAI--GAKFVP 89 (182)
Q Consensus 60 ~~~d~Iv~v~~~G~~~--a~~la~~l--~vp~~~ 89 (182)
.++|++|.++.-||++ |..+ +.. |+|+++
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~-k~~~~~i~viy 107 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKI-KKAYPKKEIIY 107 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHH-HhcCCCCCEEE
Confidence 5899999999999965 4433 445 688765
No 150
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=23.91 E-value=1.5e+02 Score=25.49 Aligned_cols=26 Identities=8% Similarity=0.119 Sum_probs=21.2
Q ss_pred CccEEEeeCCCChhhHHHHHHHhCCCeEe
Q 030139 61 NISVVAGIEARGFIFGPPIALAIGAKFVP 89 (182)
Q Consensus 61 ~~d~Iv~v~~~G~~~a~~la~~l~vp~~~ 89 (182)
++|+|+++ |||. +-..|..+++|+++
T Consensus 93 ~p~~v~~~--Gg~v-~~~aA~~~~~p~~~ 118 (396)
T TIGR03492 93 KGDLIVAV--GDIV-PLLFAWLSGKPYAF 118 (396)
T ss_pred cCCEEEEE--CcHH-HHHHHHHcCCCceE
Confidence 78998886 7777 66778888999877
No 151
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=23.82 E-value=62 Score=24.47 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=15.4
Q ss_pred CCChhhHHHHHHHhCCCeEe
Q 030139 70 ARGFIFGPPIALAIGAKFVP 89 (182)
Q Consensus 70 ~~G~~~a~~la~~l~vp~~~ 89 (182)
.+|-.+|..+|+.||+|+..
T Consensus 10 sgg~~Ia~~LA~~Lg~~~~d 29 (179)
T PF13189_consen 10 SGGREIAERLAEKLGYPYYD 29 (179)
T ss_dssp SSHHHHHHHHHHHCT--EE-
T ss_pred CChHHHHHHHHHHcCCccCC
Confidence 68889999999999999854
No 152
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.70 E-value=3.4e+02 Score=20.96 Aligned_cols=44 Identities=14% Similarity=-0.012 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCCccEEEeeCCCC--------hhhHHHHHHHhCCCeEe
Q 030139 45 AFRDTIDLFVERYKDKNISVVAGIEARG--------FIFGPPIALAIGAKFVP 89 (182)
Q Consensus 45 ~~~~~~~~la~~~~~~~~d~Iv~v~~~G--------~~~a~~la~~l~vp~~~ 89 (182)
...|+.+.=.+.+- ..+|+|++-...- -..|.++|+.+|+||..
T Consensus 109 vrnWlSQL~~hAYc-E~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfE 160 (219)
T KOG0081|consen 109 VRNWLSQLQTHAYC-ENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFE 160 (219)
T ss_pred HHHHHHHHHHhhcc-CCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeee
Confidence 33344443333332 4688888854322 25788999999999864
No 153
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=23.23 E-value=2.1e+02 Score=18.46 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=22.4
Q ss_pred CCCCeEEEEecccCchHHHHHHHHHHHhcCC
Q 030139 122 QAGERALIVDDLVATGGTLSAAIRLLERVGV 152 (182)
Q Consensus 122 ~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga 152 (182)
..+++|+++.+ +|.....+...|++.|.
T Consensus 49 ~~~~~vvl~c~---~g~~a~~~a~~L~~~G~ 76 (90)
T cd01524 49 PKDKEIIVYCA---VGLRGYIAARILTQNGF 76 (90)
T ss_pred CCCCcEEEEcC---CChhHHHHHHHHHHCCC
Confidence 45678888865 57778888889999997
No 154
>PLN02199 shikimate kinase
Probab=22.80 E-value=2.5e+02 Score=23.68 Aligned_cols=49 Identities=12% Similarity=0.251 Sum_probs=36.5
Q ss_pred cCHHHHHHHHHHHHHHhcCCCccEEEeeCCCC-hhhHHHHHHHhCCCeEee
Q 030139 41 LDTKAFRDTIDLFVERYKDKNISVVAGIEARG-FIFGPPIALAIGAKFVPM 90 (182)
Q Consensus 41 ~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G-~~~a~~la~~l~vp~~~~ 90 (182)
.|.+.++..++.+...+.+. .=+++|.+..| -.++..+|+.+|.|++..
T Consensus 84 ~de~~Lk~~a~~i~~~l~~~-~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDt 133 (303)
T PLN02199 84 FDEDILKRKAEEVKPYLNGR-SMYLVGMMGSGKTTVGKLMSKVLGYTFFDC 133 (303)
T ss_pred CCHHHHHHHHHHHHHHcCCC-EEEEECCCCCCHHHHHHHHHHHhCCCEEeh
Confidence 45566778888887766543 34788888766 589999999999998753
No 155
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=22.76 E-value=2.8e+02 Score=22.69 Aligned_cols=43 Identities=7% Similarity=0.022 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCCccEEEeeCCCChhh-HHHHHHHhCCCeEee
Q 030139 48 DTIDLFVERYKDKNISVVAGIEARGFIF-GPPIALAIGAKFVPM 90 (182)
Q Consensus 48 ~~~~~la~~~~~~~~d~Iv~v~~~G~~~-a~~la~~l~vp~~~~ 90 (182)
.+...+...+...++|+|++.......+ +...|..+++|++..
T Consensus 75 ~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~ 118 (363)
T cd03786 75 GLLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHV 118 (363)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCEEEE
Confidence 3444455556667899999986554444 445566679998754
No 156
>PRK10646 ADP-binding protein; Provisional
Probab=22.55 E-value=2.8e+02 Score=20.78 Aligned_cols=48 Identities=19% Similarity=0.098 Sum_probs=34.6
Q ss_pred hhcCHHHHHHHHHHHHHHhcCCCccEEEeeC-CCChhhHHHHHHHhCCC
Q 030139 39 LLLDTKAFRDTIDLFVERYKDKNISVVAGIE-ARGFIFGPPIALAIGAK 86 (182)
Q Consensus 39 l~~~~~~~~~~~~~la~~~~~~~~d~Iv~v~-~~G~~~a~~la~~l~vp 86 (182)
...+++..+.+++.|+..++..++=++-|-- +|--.++..+++.||++
T Consensus 7 ~~~s~~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 7 PLPDEQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred ECCCHHHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3568899999999999888654432333333 44468999999999974
No 157
>PRK04940 hypothetical protein; Provisional
Probab=22.48 E-value=3.7e+02 Score=20.75 Aligned_cols=29 Identities=17% Similarity=0.437 Sum_probs=24.8
Q ss_pred CccEEEeeCCCChhhHHHHHHHhCCCeEee
Q 030139 61 NISVVAGIEARGFIFGPPIALAIGAKFVPM 90 (182)
Q Consensus 61 ~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~ 90 (182)
+...+||..-||| +|+.+|+..|+|.+.+
T Consensus 60 ~~~~liGSSLGGy-yA~~La~~~g~~aVLi 88 (180)
T PRK04940 60 ERPLICGVGLGGY-WAERIGFLCGIRQVIF 88 (180)
T ss_pred CCcEEEEeChHHH-HHHHHHHHHCCCEEEE
Confidence 4679999999995 6889999999998765
No 158
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=22.47 E-value=2.9e+02 Score=21.24 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=30.9
Q ss_pred cCHHHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEee
Q 030139 41 LDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPM 90 (182)
Q Consensus 41 ~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~ 90 (182)
.+|...-.....+.+.... +..++||..-||| .|..+|+.+++|.+.+
T Consensus 40 ~~p~~a~~~l~~~i~~~~~-~~~~liGSSlGG~-~A~~La~~~~~~avLi 87 (187)
T PF05728_consen 40 PFPEEAIAQLEQLIEELKP-ENVVLIGSSLGGF-YATYLAERYGLPAVLI 87 (187)
T ss_pred cCHHHHHHHHHHHHHhCCC-CCeEEEEEChHHH-HHHHHHHHhCCCEEEE
Confidence 3455444444444443332 2369999999996 5668899999988654
No 159
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=22.19 E-value=2.2e+02 Score=24.94 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=36.7
Q ss_pred hcCHHHHHHHHHHHHHHhcCC----CccEEEeeCCCC-hhhHHHHHHHhC--CCeEee
Q 030139 40 LLDTKAFRDTIDLFVERYKDK----NISVVAGIEARG-FIFGPPIALAIG--AKFVPM 90 (182)
Q Consensus 40 ~~~~~~~~~~~~~la~~~~~~----~~d~Iv~v~~~G-~~~a~~la~~l~--vp~~~~ 90 (182)
+..+..++..+-.+.+.+++. +--+++|+|..| -.+|..+|+.|| +||+.+
T Consensus 41 ~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~i 98 (450)
T COG1224 41 LVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAI 98 (450)
T ss_pred ccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceee
Confidence 345666677777777766642 345889999777 589999999997 688653
No 160
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=22.07 E-value=2.7e+02 Score=22.61 Aligned_cols=38 Identities=13% Similarity=-0.095 Sum_probs=25.4
Q ss_pred HHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEe
Q 030139 52 LFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP 89 (182)
Q Consensus 52 ~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~ 89 (182)
.+.+.+++.++|+|++........+...+..+++|++.
T Consensus 81 ~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~ 118 (348)
T TIGR01133 81 QARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFH 118 (348)
T ss_pred HHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEE
Confidence 44455666789999997644334455567777888864
No 161
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=21.85 E-value=2.3e+02 Score=18.47 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=21.9
Q ss_pred CCCeEEEEecccCchHHHHHHHHHHHhcCCe
Q 030139 123 AGERALIVDDLVATGGTLSAAIRLLERVGVH 153 (182)
Q Consensus 123 ~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~ 153 (182)
+++.|++..+ +|.....+...|+..|..
T Consensus 55 ~~~~iv~~c~---~G~rs~~aa~~L~~~G~~ 82 (95)
T cd01534 55 RGARIVLADD---DGVRADMTASWLAQMGWE 82 (95)
T ss_pred CCCeEEEECC---CCChHHHHHHHHHHcCCE
Confidence 4678888875 676677788889999986
No 162
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=21.80 E-value=1.1e+02 Score=22.03 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=18.0
Q ss_pred ccCchHHHHHHHHH----HHhcCCeEEE
Q 030139 133 LVATGGTLSAAIRL----LERVGVHVVE 156 (182)
Q Consensus 133 vitTG~Tl~~~~~~----L~~~ga~~v~ 156 (182)
--.||.|+..+++. |+..|..+..
T Consensus 18 C~~Tg~~L~~av~~l~~~L~~~Giev~l 45 (120)
T PF10865_consen 18 CGDTGETLREAVKELAPVLAPLGIEVRL 45 (120)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 35799999999988 5567877543
No 163
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=21.70 E-value=1.8e+02 Score=19.15 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=25.7
Q ss_pred CCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEEE
Q 030139 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVEC 157 (182)
Q Consensus 122 ~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v 157 (182)
.+++.|++++. +|.+...+...|+..|-+.+..
T Consensus 64 ~~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~~ 96 (106)
T cd01519 64 SKDKELIFYCK---AGVRSKAAAELARSLGYENVGN 96 (106)
T ss_pred CCCCeEEEECC---CcHHHHHHHHHHHHcCCcccee
Confidence 45788999975 5888888889999999876543
No 164
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=21.58 E-value=2.9e+02 Score=22.77 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=31.2
Q ss_pred EEEeeCCCChhhHHHHHHHhCCCeEeeeccCCCCCceeeeeeeeeccceeEEEEccccCCCCeEEEEec
Q 030139 64 VVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDD 132 (182)
Q Consensus 64 ~Iv~v~~~G~~~a~~la~~l~vp~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VllVDD 132 (182)
+++--.++--.+|..+++.||+.+.-+ ..|..+.++...++. ..++||+|.|+.-
T Consensus 9 ~vl~s~ns~~elak~vaerlgi~~g~~------------~vy~~tnret~vei~--~svrgkdvfiiqt 63 (354)
T KOG1503|consen 9 MVLFSGNSHPELAKMVAERLGIELGKA------------TVYQKTNRETRVEIK--ESVRGKDVFIIQT 63 (354)
T ss_pred eEEEcCCCCHHHHHHHHHHhcccccce------------EEEecCCCceEEEhh--hhccCceEEEEEe
Confidence 334334444578999999999865321 112222233334433 3478999988753
No 165
>PRK03482 phosphoglycerate mutase; Provisional
Probab=21.48 E-value=2.3e+02 Score=21.81 Aligned_cols=42 Identities=21% Similarity=0.167 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCCccEEEeeC-CCChhhHHHHHHHhCCCeEe
Q 030139 48 DTIDLFVERYKDKNISVVAGIE-ARGFIFGPPIALAIGAKFVP 89 (182)
Q Consensus 48 ~~~~~la~~~~~~~~d~Iv~v~-~~G~~~a~~la~~l~vp~~~ 89 (182)
.-++.+++.+.+..+|.|++-| .+..--|..++..+++|+..
T Consensus 34 ~qA~~~~~~l~~~~~~~I~sSpl~Ra~qTA~~i~~~~~~~~~~ 76 (215)
T PRK03482 34 QQAMQVAERAKELGITHIISSDLGRTRRTAEIIAQACGCDIIF 76 (215)
T ss_pred HHHHHHHHHHhcCCCCEEEECCcHHHHHHHHHHHHhcCCCeeE
Confidence 3455566666655678777765 67778888888888887643
No 166
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=21.35 E-value=1.5e+02 Score=27.02 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCCccEEEeeCCCCh-hhHHHHHHHhCCCeEeee
Q 030139 50 IDLFVERYKDKNISVVAGIEARGF-IFGPPIALAIGAKFVPMR 91 (182)
Q Consensus 50 ~~~la~~~~~~~~d~Iv~v~~~G~-~~a~~la~~l~vp~~~~r 91 (182)
++.+++.+.+++++.|.|+|.+.+ ++..++-+. ++.++.+|
T Consensus 5 a~~lv~~L~~~GV~~VFGiPG~~i~~~~dal~~~-~i~~I~~R 46 (550)
T COG0028 5 AEALVEALEANGVDTVFGIPGGSILPLYDALYDS-GIRHILVR 46 (550)
T ss_pred HHHHHHHHHHcCCcEEEeCCCccHHHHHHHHHhC-CCcEEEec
Confidence 355555556667777777775543 333344333 44444443
No 167
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=21.28 E-value=3.2e+02 Score=22.66 Aligned_cols=43 Identities=9% Similarity=0.043 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCCccEEEeeCCCChhh-HHHHHHHhCCCeEee
Q 030139 48 DTIDLFVERYKDKNISVVAGIEARGFIF-GPPIALAIGAKFVPM 90 (182)
Q Consensus 48 ~~~~~la~~~~~~~~d~Iv~v~~~G~~~-a~~la~~l~vp~~~~ 90 (182)
.....+.+.+...++|+|+.--.+...+ +...|..+|+|.+.+
T Consensus 73 ~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 73 NMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 3334555666667899999985444444 456667789998643
No 168
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=21.23 E-value=1.6e+02 Score=24.47 Aligned_cols=37 Identities=5% Similarity=-0.178 Sum_probs=27.0
Q ss_pred HHHHhcCCCccEEEeeCCCCh----hhHHHHHHHhCCCeEe
Q 030139 53 FVERYKDKNISVVAGIEARGF----IFGPPIALAIGAKFVP 89 (182)
Q Consensus 53 la~~~~~~~~d~Iv~v~~~G~----~~a~~la~~l~vp~~~ 89 (182)
+++.+....+.+|+|+...+. ..+..++..+++|++.
T Consensus 55 ~~~~l~~~~v~~iig~~~s~~~~~~~~~~~v~~~~~iP~Is 95 (362)
T cd06367 55 VCDLLVVQVVAGVVFSDPTDEEAVAQILDFTSAQTRIPVVG 95 (362)
T ss_pred HHHHhcccceEEEEecCCCCccchhhhhhhhhhhhcCcEEE
Confidence 333333447889999888775 6667888899999875
No 169
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=21.13 E-value=2.1e+02 Score=24.16 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=32.6
Q ss_pred CeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEE-ecCCcc
Q 030139 125 ERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI-ELPELK 167 (182)
Q Consensus 125 k~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~-~~~~~~ 167 (182)
--|+||||- ++-+|+..+.+..++.|...+.++-+. +++.+.
T Consensus 105 ~eiiVvddg-s~d~T~~~a~k~s~K~~~d~irV~~l~~nrgKGg 147 (323)
T KOG2977|consen 105 YEIIVVDDG-STDSTVEVALKFSRKLGDDNIRVIKLKKNRGKGG 147 (323)
T ss_pred eeEEEeCCC-CchhHHHHHHHHHHHcCcceEEEeehhccCCCCc
Confidence 348999996 455789999999999999998888774 555433
No 170
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=20.99 E-value=1.7e+02 Score=19.12 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=22.4
Q ss_pred CCCeEEEEecccCchHH--HHHHHHHHHhcCCeEEE
Q 030139 123 AGERALIVDDLVATGGT--LSAAIRLLERVGVHVVE 156 (182)
Q Consensus 123 ~gk~VllVDDvitTG~T--l~~~~~~L~~~ga~~v~ 156 (182)
+++.|+|+.+ +|.+ ...+...|++.|...+.
T Consensus 49 ~~~~ivl~c~---~G~~~~s~~aa~~L~~~G~~~v~ 81 (92)
T cd01532 49 RDTPIVVYGE---GGGEDLAPRAARRLSELGYTDVA 81 (92)
T ss_pred CCCeEEEEeC---CCCchHHHHHHHHHHHcCccCEE
Confidence 4677888875 5532 56778889999987665
No 171
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=20.83 E-value=2.5e+02 Score=18.19 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEeeCCCChhhHHHHHHHhCCCeEeee
Q 030139 44 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMR 91 (182)
Q Consensus 44 ~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~vp~~~~r 91 (182)
+.....+..++..+...++.+.+-.....+.---.-|...|+|+..+-
T Consensus 12 ~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iii 59 (94)
T PF03129_consen 12 EEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIII 59 (94)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEE
Confidence 345577778888887777777777755555555555666799997653
No 172
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=20.73 E-value=6.8e+02 Score=24.34 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=23.0
Q ss_pred CCCCeEEEEecccCchHHHHHHHHHHHhcCCeEEE
Q 030139 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVE 156 (182)
Q Consensus 122 ~~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~ 156 (182)
..|.+||+|||--..- ..+...|++.|+.++.
T Consensus 687 l~g~~vLlvdD~~~~r---~~l~~~L~~~G~~v~~ 718 (894)
T PRK10618 687 LDGVTVLLDITSEEVR---KIVTRQLENWGATCIT 718 (894)
T ss_pred CCCCEEEEEeCCHHHH---HHHHHHHHHCCCEEEE
Confidence 5688999999887543 3344577888988653
No 173
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=20.71 E-value=2.7e+02 Score=24.44 Aligned_cols=57 Identities=18% Similarity=0.082 Sum_probs=42.4
Q ss_pred eEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCCChhhH-HHHH---HHhCCCeEee
Q 030139 32 MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFG-PPIA---LAIGAKFVPM 90 (182)
Q Consensus 32 ~~~d~~~l~~~~~~~~~~~~~la~~~~~~~~d~Iv~v~~~G~~~a-~~la---~~l~vp~~~~ 90 (182)
.-.++..++-+++..+.+++.|..... +.|.|+.+.-=|.-.+ ..++ ..+|.++..+
T Consensus 189 ~~~~iAr~ld~~~~~~~l~~~l~~~~~--~~~~V~~PavIGle~a~~v~~~L~~~LG~~V~~v 249 (422)
T PRK05329 189 RAVNIARLLDDPENREALADALKPLAG--DAEAVLLPAVLGLDDDAAVLAELEEALGCPVFEL 249 (422)
T ss_pred cHHHHHHHhCChhHHHHHHHHHHHhcC--CCCEEEECceecCCChHHHHHHHHHHHCCCEEEe
Confidence 345677888889888888888876543 5578888888888777 4444 5689988665
No 174
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=20.59 E-value=2e+02 Score=18.94 Aligned_cols=31 Identities=23% Similarity=0.226 Sum_probs=22.8
Q ss_pred CCCeEEEEecccCchHHHHHHHHHHHhcCCeEEE
Q 030139 123 AGERALIVDDLVATGGTLSAAIRLLERVGVHVVE 156 (182)
Q Consensus 123 ~gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~ 156 (182)
+++.|++++ .+|.+...+...|+..|...+.
T Consensus 64 ~~~~vv~~c---~~g~~s~~~a~~L~~~G~~~v~ 94 (105)
T cd01525 64 KGKIIVIVS---HSHKHAALFAAFLVKCGVPRVC 94 (105)
T ss_pred cCCeEEEEe---CCCccHHHHHHHHHHcCCCCEE
Confidence 367788887 4566667777889999987654
No 175
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=20.09 E-value=1.4e+02 Score=23.17 Aligned_cols=39 Identities=28% Similarity=0.288 Sum_probs=30.5
Q ss_pred CCeEEEEecccCchHHHHHHHHHHHhcCCeEEEEEEEEe
Q 030139 124 GERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 162 (182)
Q Consensus 124 gk~VllVDDvitTG~Tl~~~~~~L~~~ga~~v~v~~l~~ 162 (182)
...=+|+||++-+-.-+--|++.|..+..--|++-|=.+
T Consensus 113 ~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E 151 (205)
T COG3896 113 NGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDE 151 (205)
T ss_pred cCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHH
Confidence 335679999999999999999999887766666655443
Done!