BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030140
(182 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q59J78|MIMIT_MOUSE Mimitin, mitochondrial OS=Mus musculus GN=Ndufaf2 PE=2 SV=1
Length = 168
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 41/174 (23%)
Query: 15 RTQVGVDKAGNRYFTRTEELDGR---MKEKRWVVFKG----EQDPTSVPVEWICWLNGQR 67
R VG D GN+Y+ E + R ++EKR V + + +P EW W+ R
Sbjct: 20 REHVGTDHLGNKYYYVAEYKNWRGQTIREKRIVEAANRKEVDYEAGDIPTEWEAWIRRTR 79
Query: 68 KIAPTPEEIAELEARRERVKLNVA-LLKKEEKEKRAKEGTIPKRTSSGIVGGPDLKSFLR 126
K PT EEI + E RE +K+ +K++ K E +P T++ + G F R
Sbjct: 80 KTPPTMEEILKNEKYREEIKIKSQDFYEKDKLGKETSEELLPSPTATQVKGHASAPYFGR 139
Query: 127 QFPSGSEGDKRQEPTGAKDGERTKETETEEAKPVPEYSEPTGSGKSFRPGTWQP 180
+ PS + PT +GK+F+PG+W P
Sbjct: 140 EEPSVA---------------------------------PTSTGKTFQPGSWTP 160
>sp|Q8N183|MIMIT_HUMAN Mimitin, mitochondrial OS=Homo sapiens GN=NDUFAF2 PE=1 SV=1
Length = 169
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 42/175 (24%)
Query: 15 RTQVGVDKAGNRYFTRTEELDGR---MKEKRWV--VFKGEQDPTS--VPVEWICWLNGQR 67
+ VG D+ GN+Y+ + + R ++EKR V K E D + +P EW W+ R
Sbjct: 20 KEHVGTDQFGNKYYYIPQYKNWRGQTIREKRIVEAANKKEVDYEAGDIPTEWEAWIRRTR 79
Query: 68 KIAPTPEEIAELEARRERVKLNVALLKKEEK--EKRAKEGTIPKRTSSGIVGGPDLKSFL 125
K PT EEI + E RE +K+ ++EK K E +P + I G F
Sbjct: 80 KTPPTMEEILKNEKHREEIKIKSQDFYEKEKLLSKETSEELLPPPVQTQIKGHASAPYFG 139
Query: 126 RQFPSGSEGDKRQEPTGAKDGERTKETETEEAKPVPEYSEPTGSGKSFRPGTWQP 180
++ PS + P+ +GK+F+PG+W P
Sbjct: 140 KEEPSVA---------------------------------PSSTGKTFQPGSWMP 161
>sp|Q32P65|MIMIT_BOVIN Mimitin, mitochondrial OS=Bos taurus GN=NDUFAF2 PE=2 SV=1
Length = 168
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 74/176 (42%), Gaps = 45/176 (25%)
Query: 15 RTQVGVDKAGNRYFTRTEELDGR---MKEKRWV--VFKGEQDPT--SVPVEWICWLNGQR 67
+ QVG D+ GN+Y+ E + R ++EKR V K E D +P EW W+ R
Sbjct: 20 KEQVGTDRFGNKYYYIPEYKNWRGQTIREKRIVEAANKSEIDYEVGDIPTEWEAWIRKTR 79
Query: 68 KIAPTPEEIAELEARRERVKLNVALLKKEEK---EKRAKEGTIPKRTSSGIVGGPDLKSF 124
+ PT EEI + E RE +++ ++EK E+ KE +P + I G F
Sbjct: 80 QTPPTMEEIMKNEKCREEIQMKSQDFYEKEKLLQEESNKE--LPPPVQTQIKGHASAPYF 137
Query: 125 LRQFPSGSEGDKRQEPTGAKDGERTKETETEEAKPVPEYSEPTGSGKSFRPGTWQP 180
+ PS S PT +GK+F+PG+W P
Sbjct: 138 GKDEPSES---------------------------------PTSTGKTFQPGSWMP 160
>sp|Q54MV7|NDUAC_DICDI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Dictyostelium discoideum GN=ndufa12 PE=2 SV=2
Length = 138
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 16 TQVGVDKAGNRYFTRTEELDGRMKEKRWVVF--KGEQDPTSVPVEWICWLN 64
T VGVDK GNRY+ +E+ GR RWV + DPT++P E+ W++
Sbjct: 33 TLVGVDKVGNRYYENRQEIYGR---HRWVEYGDYKSNDPTTIPPEYHSWIH 80
>sp|Q9M9M9|NDUAC_ARATH Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
12 OS=Arabidopsis thaliana GN=At3g03100 PE=1 SV=1
Length = 159
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 15/113 (13%)
Query: 16 TQVGVDKAGNRYFTRTEELDGRMKEKRWVVF--KGEQDPTSVPVEWICWLNGQRKIAPTP 73
T VGVDK GN+Y+ + D + RWV + K + + VP EW WL+ T
Sbjct: 50 TLVGVDKFGNKYYQKLG--DTQYGRHRWVEYASKDRYNASQVPAEWHGWLH--FITDHTG 105
Query: 74 EEIAELEARRERVKLNVALLKKEEKEKRAKEGTIPKRTSSGIVGGPDLKSFLR 126
+E+ L+ +R + E KE + EG S G P K++ R
Sbjct: 106 DELLSLKPKRYGL---------EHKENFSGEGDAYIYHSKGHTLNPGQKNWTR 149
>sp|Q0MQ87|NDUAC_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Pan troglodytes GN=NDUFA12 PE=2 SV=1
Length = 145
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 16 TQVGVDKAGNRYFTRTEELDGRMKEKRWVVFKGEQ---------DPTSVPVEWICWLNGQ 66
T VG DK GN+Y+ ++ GR RWVV+ E D + VP EW WL+
Sbjct: 37 TLVGEDKYGNKYYEDNKQFFGR---HRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSM 93
Query: 67 RKIAPTPEEIAELEARRERVKLNVA 91
PT + + + K NV
Sbjct: 94 TDDPPTTKPLTARKFIWTNHKFNVT 118
>sp|Q9UI09|NDUAC_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Homo sapiens GN=NDUFA12 PE=1 SV=1
Length = 145
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 16 TQVGVDKAGNRYFTRTEELDGRMKEKRWVVFKGEQ---------DPTSVPVEWICWLNGQ 66
T VG DK GN+Y+ ++ GR RWVV+ E D + VP EW WL+
Sbjct: 37 TLVGEDKYGNKYYEDNKQFFGR---HRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSM 93
Query: 67 RKIAPTPEEIAELEARRERVKLNVA 91
PT + + + K NV
Sbjct: 94 TDDPPTTKPLTARKFIWTNHKFNVT 118
>sp|Q0MQ85|NDUAC_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Pongo pygmaeus GN=NDUFA12 PE=2 SV=1
Length = 145
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 27/115 (23%)
Query: 1 MSRLLARIAG----------FFSSR-----TQVGVDKAGNRYFTRTEELDGRMKEKRWVV 45
+ R L RI G FF + T VG DK GN+Y+ ++ GR RWVV
Sbjct: 7 LKRGLQRITGHGGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYYEDNKQFFGR---HRWVV 63
Query: 46 FKGEQ---------DPTSVPVEWICWLNGQRKIAPTPEEIAELEARRERVKLNVA 91
+ E D + VP EW WL+ PT + + + K NV
Sbjct: 64 YTTEMNGKNTFWDVDGSMVPPEWHHWLHSITDDPPTTKPLTARKFIWTNHKFNVT 118
>sp|Q0MQ86|NDUAC_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Gorilla gorilla gorilla GN=NDUFA12 PE=2 SV=1
Length = 145
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 16 TQVGVDKAGNRYFTRTEELDGRMKEKRWVVFKGEQ---------DPTSVPVEWICWLNGQ 66
T VG DK GN+Y+ ++ GR RWVV+ E D + VP EW WL+
Sbjct: 37 TLVGEDKYGNKYYEDNKQFFGR---HRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSM 93
Query: 67 RKIAPTPEEIAELEARRERVKLNVA 91
PT + + + K N+
Sbjct: 94 TDDPPTTKPLTARKFIWTNHKFNMT 118
>sp|Q7TMF3|NDUAC_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Mus musculus GN=Ndufa12 PE=1 SV=2
Length = 145
Score = 37.4 bits (85), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 16 TQVGVDKAGNRYFTRTEELDGRMKEKRWVVFKGEQ---------DPTSVPVEWICWLNGQ 66
T VG DK GN+Y+ ++ GR RWV++ E D + VP EW WL+
Sbjct: 37 TLVGEDKYGNKYYEDNKQFFGR---HRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCM 93
Query: 67 RKIAPT 72
PT
Sbjct: 94 TDDPPT 99
>sp|O97725|NDUAC_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Bos taurus GN=NDUFA12 PE=1 SV=1
Length = 145
Score = 37.4 bits (85), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 16 TQVGVDKAGNRYFTRTEELDGRMKEKRWVVFKGEQ---------DPTSVPVEWICWLNGQ 66
T VG DK GN+Y+ ++ GR RWV++ E D + VP EW WL+
Sbjct: 37 TLVGEDKYGNKYYEDNKQFFGR---HRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCM 93
Query: 67 RKIAPT 72
PT
Sbjct: 94 TDDPPT 99
>sp|Q9ZCK4|Y725_RICPR Uncharacterized protein RP725 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP725 PE=4 SV=1
Length = 100
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 5 LARIAGFFSS--RTQVGVDKAGNRYFTRTEELDGRMKEKRWVVFKGEQDPTSVPVEWICW 62
++ I FF + T+VG D+ N+Y+ +D + +R V++K + T +P W W
Sbjct: 1 MSWIDKFFITFFYTKVGEDEFLNQYYESRNNIDYLGRSRRCVIYKNINESTKIPPSWYSW 60
Query: 63 LNG 65
L+
Sbjct: 61 LHH 63
>sp|Q9N2W7|NDUAC_CAEEL Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex
subunit 12 OS=Caenorhabditis elegans GN=Y94H6A.8 PE=3
SV=2
Length = 146
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 16 TQVGVDKAGNRYFTRTEELDGRMKEKRWVVFKG----EQDPTSVPVEWICWLNGQRKIAP 71
T VG D GNRY+ R RWV F + D T VP EW WL+ AP
Sbjct: 42 TLVGSDNFGNRYYENNAYFVPR---NRWVEFPDKVWLDYDATQVPPEWHSWLHHITDDAP 98
Query: 72 T 72
+
Sbjct: 99 S 99
>sp|Q15648|MED1_HUMAN Mediator of RNA polymerase II transcription subunit 1 OS=Homo sapiens
GN=MED1 PE=1 SV=4
Length = 1581
Score = 34.7 bits (78), Expect = 0.40, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 70 APTPEEIAELEARRERVKLNVALLKKEEKEKRAKEGTIPKRTSSGIVGGP--DLKSFLRQ 127
A P ++ E + + L L KE+ +KR KEG TS+ + GP D K R
Sbjct: 940 ALAPADLMEHHSGSQGPLLTTGDLGKEKTQKRVKEGN---GTSNSTLSGPGLDSKPGKRS 996
Query: 128 FPSGSEGDKRQEPTGAKDGERTKETETEEAKPVPEYSEPTGSGKSFRPGT 177
++G + +P K + ++ + + P ++ PT +G S PG+
Sbjct: 997 RTPSNDGKSKDKPPKRKKADTEGKSPSHSSSNRP-FTPPTSTGGSKSPGS 1045
>sp|P30628|VPP1_CAEEL Probable V-type proton ATPase 116 kDa subunit a OS=Caenorhabditis
elegans GN=unc-32 PE=2 SV=3
Length = 905
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 15/99 (15%)
Query: 65 GQRKIAPTPEEIAELEARRERVKLNVALLKKEEKEKRAKEGTIPKRTSSGIVGGPDLKSF 124
G+ AP P E+ +LEA E+ L+ E +E E T+ K S +LK
Sbjct: 95 GENPDAPLPREMIDLEATFEK-------LENELREVNKNEETLKKNFSELT----ELKHI 143
Query: 125 LRQ---FPSGSEGDKRQEPTGAKDGERTKETETEEAKPV 160
LR+ F + D+ + G G R + TE EE +P+
Sbjct: 144 LRKTQTFFEEVDHDRWRILEGGS-GRRGRSTEREETRPL 181
>sp|Q65GR9|MNMA_BACLD tRNA-specific 2-thiouridylase MnmA OS=Bacillus licheniformis
(strain DSM 13 / ATCC 14580) GN=mnmA PE=3 SV=1
Length = 372
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 56/145 (38%), Gaps = 23/145 (15%)
Query: 7 RIAGFFSSRTQVGVDKAGNRYFTRTEELDGRMKEKRWVVFKGEQDPTSVPVEWICWLNGQ 66
+ F +G D ++ R + DGR+K R + D ++ L +
Sbjct: 109 KFKAFLEHALSLGADYLATGHYARVDRTDGRVKMLRGL------DENKDQTYFLNQLT-E 161
Query: 67 RKIAPTPEEIAELEARRERVKLNVALLKKEEKEKRAKEGTIPKRTSSGI--VGGPDLKSF 124
+++ I +L+ R R E K A T K+ S+GI +G + K+F
Sbjct: 162 EQLSKVLFPIGQLQKSRVR-----------EIAKEAGLATAAKKDSTGICFIGERNFKTF 210
Query: 125 LRQFPSGSEGDKRQ---EPTGAKDG 146
L Q+ GD R E G DG
Sbjct: 211 LSQYLPAQPGDMRTMEGEFKGRHDG 235
>sp|A6NCM1|IQCAL_HUMAN Putative IQ and AAA domain-containing protein 1-like OS=Homo
sapiens GN=IQCA1P1 PE=5 SV=2
Length = 817
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 13/110 (11%)
Query: 26 RYFTRTEELDGRMKEKRWVVFKGEQDPTSVPVEWICWLNGQRK------------IAPTP 73
R R EE DGR++E W F Q ++ W +L +R + P+P
Sbjct: 184 REIRRDEEQDGRIREDGWHKFSQGQAAVTIQKVWKGYLQRKRTQQDRRMEMEFIGMLPSP 243
Query: 74 EEIAELEARRERVKL-NVALLKKEEKEKRAKEGTIPKRTSSGIVGGPDLK 122
++ L + + +V L++ EKE+ + + S GPD+K
Sbjct: 244 NQVEHLSIISQPCLVEDVQRLRQMEKEEEFRAAMVKAHDSLVETEGPDMK 293
>sp|Q3ZB98|BCAS1_RAT Breast carcinoma-amplified sequence 1 homolog (Fragment) OS=Rattus
norvegicus GN=Bcas1 PE=1 SV=2
Length = 555
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 24/135 (17%)
Query: 52 PTSVPVEWICWLNG--QRKIAPTPEEIAELEARRERVKL--------NVALLKKEEK--- 98
PTS+P+ + W + ++ EE A E E V+L V L +KE +
Sbjct: 334 PTSLPLGKLFWKKSVKEDSLSTGAEENAVCEPPVETVRLEEVESTLQTVDLTEKETQTEP 393
Query: 99 -EKRAKEGTIPKRTSSGIVGGPDLKSFLRQFPS-GSEGDKRQEPTGAKDGERTKETETEE 156
+ + KE + P+RT L +FLRQ GSEG R E + KD TE+
Sbjct: 394 TDVKVKEESKPRRTP--------LMAFLRQMSVRGSEGITRSEESNGKDSSCQTSNSTEK 445
Query: 157 AKPVPEYSEPTGSGK 171
P P EP G+ +
Sbjct: 446 T-PSPPEPEPAGTAQ 459
>sp|Q9Z277|BAZ1B_MOUSE Tyrosine-protein kinase BAZ1B OS=Mus musculus GN=Baz1b PE=1 SV=2
Length = 1479
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 9 AGFFSSRTQVGVDKAGNRYFTRTEELDGRMKEKRWVV------FKGE-QDPTSVPVEWIC 61
A RT +G D+ NRY+ + E+ G EK WV FK +D +++P + C
Sbjct: 895 AKLVLRRTPIGTDRNHNRYWLFSNEVPGLFIEKGWVHNSIDYRFKHHRKDHSNLPDDDYC 954
>sp|Q9UIG0|BAZ1B_HUMAN Tyrosine-protein kinase BAZ1B OS=Homo sapiens GN=BAZ1B PE=1 SV=2
Length = 1483
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 9 AGFFSSRTQVGVDKAGNRYFTRTEELDGRMKEKRWV 44
A RT +G D+ NRY+ ++E+ G EK WV
Sbjct: 894 AKLVMRRTPIGTDRNHNRYWLFSDEVPGLFIEKGWV 929
>sp|Q8BMD7|MORC4_MOUSE MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4
PE=2 SV=2
Length = 928
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 42 RWVVFKGEQDPTSVPVEWICWLNGQRKI--APTPEEIAELEARRERVKLNVALLKKEEKE 99
+W G DP+++P W C+ N K PEE ++ R K + E+K+
Sbjct: 431 KWRRLPGMVDPSTLPARWFCYYNPHPKFKRCSVPEEQERIDEDLHRSKAKQQVEAAEKKQ 490
Query: 100 K 100
K
Sbjct: 491 K 491
>sp|Q68XR2|CLPB_RICTY Chaperone protein ClpB OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=clpB PE=3 SV=1
Length = 858
Score = 30.8 bits (68), Expect = 5.4, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 68 KIAPTPEEIAELEARRERVKLNVALLKKEEKEKRAKEGT 106
+++ PEE+ EL+ R ++K+ +A LKKE E K+ T
Sbjct: 405 ELSSKPEELDELDRRIIQIKIELAALKKENDEHSKKKIT 443
>sp|Q9ZEA9|CLPB_RICPR Chaperone protein ClpB OS=Rickettsia prowazekii (strain Madrid E)
GN=clpB PE=3 SV=1
Length = 858
Score = 30.8 bits (68), Expect = 5.4, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 68 KIAPTPEEIAELEARRERVKLNVALLKKEEKEKRAKEGT 106
+++ PEE+ EL+ R ++K+ +A LKKE E K+ T
Sbjct: 405 ELSSKPEELDELDRRIIQIKIELAALKKENDEHSKKKIT 443
>sp|O18737|CACO2_BOVIN Calcium-binding and coiled-coil domain-containing protein 2 OS=Bos
taurus GN=CALCOCO2 PE=2 SV=1
Length = 450
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 97 EKEKRAKEGTIPKRTSSGIVG--GPDLKSFLRQFPSGSEGDKRQEP 140
EKEK KE KR ++ ++ G D S Q P+ ++G RQ+P
Sbjct: 327 EKEKMEKENDYLKRENNRLLSYMGLDCDSLSYQVPTSNQGGTRQDP 372
>sp|Q1RGR1|CLPB_RICBR Chaperone protein ClpB OS=Rickettsia bellii (strain RML369-C)
GN=clpB PE=3 SV=1
Length = 858
Score = 30.4 bits (67), Expect = 7.5, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 68 KIAPTPEEIAELEARRERVKLNVALLKKEEKEKRAKE 104
+++ PEE+ EL+ R ++K+ +A LKKE E K+
Sbjct: 405 ELSSKPEELDELDRRIIQIKIELAALKKESDEHSKKK 441
>sp|Q4UN57|CLPB_RICFE Chaperone protein ClpB OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=clpB PE=3 SV=2
Length = 858
Score = 30.0 bits (66), Expect = 7.8, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 68 KIAPTPEEIAELEARRERVKLNVALLKKEEKEKRAKEGT 106
+++ PEE+ EL+ R ++K+ +A LKKE E K+ T
Sbjct: 405 ELSSKPEELDELDRRIIQIKIELAALKKENDEHSKKKIT 443
>sp|Q9JHY8|DNLI1_RAT DNA ligase 1 OS=Rattus norvegicus GN=Lig1 PE=2 SV=1
Length = 918
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 22/99 (22%)
Query: 8 IAGFFSSRTQVGVDKAGNRYFTRTEELDGRMKEKRWVVFKGEQDPTSV--------PVEW 59
++ FF+ R K + + EE D KE+ KG DPT+ P+E
Sbjct: 229 LSSFFTPR------KPAVKTEVKQEESDTPRKEET----KGAPDPTNYNPSKSNYHPIED 278
Query: 60 ICWLNGQR----KIAPTPEEIAELEARRERVKLNVALLK 94
CW +GQ+ +A T E+I E+ AR + V+ LL+
Sbjct: 279 ACWKHGQKVPFLAVARTFEKIEEVSARLKMVETLSNLLR 317
>sp|Q92JK8|CLPB_RICCN Chaperone protein ClpB OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=clpB PE=3 SV=1
Length = 857
Score = 30.0 bits (66), Expect = 9.6, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 68 KIAPTPEEIAELEARRERVKLNVALLKKEEKEKRAKE 104
+++ PEE+ EL+ R ++K+ +A LKKE E K+
Sbjct: 405 ELSSKPEELDELDRRIIQIKIELAALKKENDEHSKKK 441
>sp|Q05739|THIO_STRC2 Thioredoxin OS=Streptomyces clavuligerus (strain ATCC 27064 / DSM
738 / JCM 4710 / NBRC 13307 / NCIMB 12785 / NRRL 3585 /
VKM Ac-602) GN=trxA PE=1 SV=1
Length = 107
Score = 30.0 bits (66), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 59 WICWLNGQRKIAPTPEEIAELEARRERVKLNVALLKKEEKEKRAKEGTIPKRTSSGIVGG 118
W W R+IAP+ E I E + E VKLN+ + AK G + T + GG
Sbjct: 29 WAEWCGPCRQIAPSLEAITEHGGQIEIVKLNI----DQNPATAAKYGVMSIPTLNVYQGG 84
Query: 119 PDLKSFLRQFPSGS 132
+K+ + P +
Sbjct: 85 EVVKTIVGAKPKAA 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,728,129
Number of Sequences: 539616
Number of extensions: 3566332
Number of successful extensions: 9997
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 133
Number of HSP's that attempted gapping in prelim test: 9900
Number of HSP's gapped (non-prelim): 215
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)