Query         030140
Match_columns 182
No_of_seqs    177 out of 499
Neff          4.9 
Searched_HMMs 46136
Date          Fri Mar 29 09:09:39 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030140hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PF05071 NDUFA12:  NADH ubiquin  99.9 2.9E-26 6.3E-31  174.3   6.5   79   15-96      1-81  (105)
  2 PRK08183 NADH dehydrogenase; V  99.9 5.5E-26 1.2E-30  179.9   5.1   66   11-76     22-87  (133)
  3 PLN03095 NADH:ubiquinone oxido  99.9 1.7E-25 3.6E-30  173.3   4.6   66    8-76      3-70  (115)
  4 PRK06630 hypothetical protein;  99.9 4.4E-25 9.6E-30  166.2   5.6   58   13-72     11-69  (99)
  5 PLN02732 Probable NADH dehydro  99.9 1.2E-22 2.6E-27  164.8   5.8   56   15-73     49-107 (159)
  6 KOG3382 NADH:ubiquinone oxidor  99.9   1E-22 2.2E-27  161.2   4.7   62   10-74     42-107 (151)
  7 COG3761 NADH:ubiquinone oxidor  99.8 6.3E-21 1.4E-25  145.5   2.6   74    1-78      1-75  (118)
  8 PF15613 WHIM2:  WSTF, HB1, Itc  91.9    0.17 3.7E-06   32.3   2.6   30   16-45      3-34  (38)
  9 KOG3088 Secretory carrier memb  49.8      31 0.00066   31.4   4.7   25   77-101    67-91  (313)
 10 PF15136 UPF0449:  Uncharacteri  43.7      17 0.00037   27.7   1.9   17   65-81      8-24  (97)
 11 PF06631 DUF1154:  Protein of u  43.1      56  0.0012   21.8   4.0   28   68-95      6-33  (47)
 12 PF06739 SBBP:  Beta-propeller   26.5      45 0.00098   20.6   1.5   16   15-30     15-30  (38)
 13 PF11385 DUF3189:  Protein of u  23.7      57  0.0012   26.3   1.9   16   16-31     53-68  (148)
 14 COG2924 Uncharacterized protei  23.6      55  0.0012   24.6   1.7   37   57-101    37-73  (90)
 15 PF11461 RILP:  Rab interacting  22.6 1.2E+02  0.0027   21.1   3.2   30   72-101     1-30  (60)
 16 cd01717 Sm_B The eukaryotic Sm  21.8      50  0.0011   23.4   1.1   17   14-30     24-40  (79)

No 1  
>PF05071 NDUFA12:  NADH ubiquinone oxidoreductase subunit NDUFA12;  InterPro: IPR007763  NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. this entry represents the 17.2kDa subunit from NADH:ubiquinone oxidoreductase and its homologues []. This subunit is believed to be one of the 36 structural complex I proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0009055 electron carrier activity, 0016020 membrane
Probab=99.93  E-value=2.9e-26  Score=174.34  Aligned_cols=79  Identities=34%  Similarity=0.686  Sum_probs=64.4

Q ss_pred             CeEeeeeCCCCeEeecCccCCCCCccceeEEcCC--CCCCCcCChhhHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 030140           15 RTQVGVDKAGNRYFTRTEELDGRMKEKRWVVFKG--EQDPTSVPVEWICWLNGQRKIAPTPEEIAELEARRERVKLNVAL   92 (182)
Q Consensus        15 ~~~VG~D~~GNkYYE~~~~~~G~~r~rRwV~y~~--~~d~s~IPpeW~~WL~~~r~~pPT~eEi~~~~~rre~~K~~a~~   92 (182)
                      |+|||+|++||+|||++.  .+..+++|||+|++  +|+++.||||||+||||+|++|||.+++..+ ..++..+.|+..
T Consensus         1 G~lVG~D~~GN~YyE~~~--~~~~~~rRwV~y~~~~~~~~s~IPpeWh~WL~~~r~~pPt~~~~~~~-~~~~~~~~n~t~   77 (105)
T PF05071_consen    1 GTLVGTDEFGNKYYENPR--DEQGRRRRWVEYAGKSDYDPSQIPPEWHAWLHHTRDEPPTEEELARR-QWQKPHKPNLTG   77 (105)
T ss_pred             CCEeeEeCCCCEEEeecC--CCcCCCcEEEEcCCccccCcCccCcchHHHhccCcCCCCCccccchH-HHHHHhhhhhhc
Confidence            689999999999999982  22347899999985  6789999999999999999999997777644 445577777776


Q ss_pred             HHHH
Q 030140           93 LKKE   96 (182)
Q Consensus        93 le~k   96 (182)
                      ++++
T Consensus        78 ~~~a   81 (105)
T PF05071_consen   78 TEEA   81 (105)
T ss_pred             ChHh
Confidence            6554


No 2  
>PRK08183 NADH dehydrogenase; Validated
Probab=99.92  E-value=5.5e-26  Score=179.88  Aligned_cols=66  Identities=29%  Similarity=0.653  Sum_probs=58.0

Q ss_pred             CCCCCeEeeeeCCCCeEeecCccCCCCCccceeEEcCCCCCCCcCChhhHhhhhcCCCCCCChHHH
Q 030140           11 FFSSRTQVGVDKAGNRYFTRTEELDGRMKEKRWVVFKGEQDPTSVPVEWICWLNGQRKIAPTPEEI   76 (182)
Q Consensus        11 ~~~~~~~VG~D~~GNkYYE~~~~~~G~~r~rRwV~y~~~~d~s~IPpeW~~WL~~~r~~pPT~eEi   76 (182)
                      .++.+.|||+|++||||||+.+...+..+++|||+|++++|++.||||||+||||++++|||.+++
T Consensus        22 ~~r~g~lVG~D~~GNkYYE~~~~~~~~~~~rRWV~Y~~~~d~s~IPpeWh~WLh~~~d~pPt~~~~   87 (133)
T PRK08183         22 TWRKGERVGEDEFGNVYYRTKGGKPSDGRERRWVIYNGYAEASRIPPEWHGWLHHTVDVPPTKEPY   87 (133)
T ss_pred             hhccCeEeEecCCCCeeeecCCccccCCCceEEEEeCCCCCccccCchHHhhhccCcCCCCCcccc
Confidence            346789999999999999998643233478999999999999999999999999999999998776


No 3  
>PLN03095 NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional
Probab=99.91  E-value=1.7e-25  Score=173.25  Aligned_cols=66  Identities=24%  Similarity=0.502  Sum_probs=57.3

Q ss_pred             HhcCCCCCeEeeeeCCCCeEeecCccCCCCCccceeEEcCC--CCCCCcCChhhHhhhhcCCCCCCChHHH
Q 030140            8 IAGFFSSRTQVGVDKAGNRYFTRTEELDGRMKEKRWVVFKG--EQDPTSVPVEWICWLNGQRKIAPTPEEI   76 (182)
Q Consensus         8 ~~~~~~~~~~VG~D~~GNkYYE~~~~~~G~~r~rRwV~y~~--~~d~s~IPpeW~~WL~~~r~~pPT~eEi   76 (182)
                      +....+.+.|||+|.|||+|||++....|   ++|||+|++  +||+++||||||+||||++++|||.+++
T Consensus         3 ~~~~~r~g~lVG~D~~GNkYYE~~~~~~~---rrRWV~Y~~~~d~d~S~VPpeWH~WLh~~~d~pPt~~~~   70 (115)
T PLN03095          3 LVLASRAGRLVGEDEFGNKYYENPSYQSG---RHRWVEYADKDDYNASNIPPEWHGWLHYVNDEPGELEDR   70 (115)
T ss_pred             ceeeeecceEeEEcCCCCeeeEcCCCCCC---CeEEEEeCCCccCCccccCchHhHhhccCcCCCCCcccc
Confidence            45567889999999999999999865444   699999996  7899999999999999999999996543


No 4  
>PRK06630 hypothetical protein; Provisional
Probab=99.91  E-value=4.4e-25  Score=166.16  Aligned_cols=58  Identities=28%  Similarity=0.595  Sum_probs=52.2

Q ss_pred             CCCeEeeeeCCCCeEeecCcc-CCCCCccceeEEcCCCCCCCcCChhhHhhhhcCCCCCCC
Q 030140           13 SSRTQVGVDKAGNRYFTRTEE-LDGRMKEKRWVVFKGEQDPTSVPVEWICWLNGQRKIAPT   72 (182)
Q Consensus        13 ~~~~~VG~D~~GNkYYE~~~~-~~G~~r~rRwV~y~~~~d~s~IPpeW~~WL~~~r~~pPT   72 (182)
                      +.|.|||+|.|||+|||.... ..|  +++|||+|++.+|+|+|||+||+||||+.|+|||
T Consensus        11 r~G~lVG~D~~GNkYYE~~~~~~~g--r~rRWViY~g~~daS~VPpeWHgWLHh~~D~pPt   69 (99)
T PRK06630         11 FFHKKVGEDEFLNQYYESRNIDYLG--RPRRFVIYKNVNEPTKIPPSWHAWLHHLVNEIPK   69 (99)
T ss_pred             ccCeEeEEeCCCChhcccCCCccCC--CceEEEEeCCCCccccCCcchhhhhccccCCCCC
Confidence            468999999999999998642 234  7899999999999999999999999999999999


No 5  
>PLN02732 Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
Probab=99.87  E-value=1.2e-22  Score=164.84  Aligned_cols=56  Identities=34%  Similarity=0.654  Sum_probs=50.6

Q ss_pred             CeEeeeeCCCCeEeecCc-cCCCCCccceeEEcCC--CCCCCcCChhhHhhhhcCCCCCCCh
Q 030140           15 RTQVGVDKAGNRYFTRTE-ELDGRMKEKRWVVFKG--EQDPTSVPVEWICWLNGQRKIAPTP   73 (182)
Q Consensus        15 ~~~VG~D~~GNkYYE~~~-~~~G~~r~rRwV~y~~--~~d~s~IPpeW~~WL~~~r~~pPT~   73 (182)
                      ++|||+|.|||||||++. ...|   ++|||+|++  +||+|.||||||+||||++|.||+.
T Consensus        49 G~lVG~D~~GNkYYE~~~~~~~g---rrRWV~Y~~~~~~daS~VPpeWH~WLH~~~D~pP~~  107 (159)
T PLN02732         49 ATLVGVDKFGNKYYQKLGDTQYG---RHRWVEYAEKSRYNASQVPAEWHGWLHFITDHTGDE  107 (159)
T ss_pred             cEEEEecCCCCeeeecCCCCCCC---ceeEEEeCCCccCCcCcCCchhhhhhccccCCCCcc
Confidence            899999999999999984 4456   499999996  8899999999999999999999984


No 6  
>KOG3382 consensus NADH:ubiquinone oxidoreductase, B17.2 subunit [Energy production and conversion]
Probab=99.87  E-value=1e-22  Score=161.24  Aligned_cols=62  Identities=34%  Similarity=0.654  Sum_probs=56.7

Q ss_pred             cCCCCCeEeeeeCCCCeEeecCccCCCCCccceeEEcCC----CCCCCcCChhhHhhhhcCCCCCCChH
Q 030140           10 GFFSSRTQVGVDKAGNRYFTRTEELDGRMKEKRWVVFKG----EQDPTSVPVEWICWLNGQRKIAPTPE   74 (182)
Q Consensus        10 ~~~~~~~~VG~D~~GNkYYE~~~~~~G~~r~rRwV~y~~----~~d~s~IPpeW~~WL~~~r~~pPT~e   74 (182)
                      .+.+.|+|||.|.|||||||++..+.|   ++|||+|+.    +||+|.||||||+|||+..|+||+..
T Consensus        42 d~~kiGTLVG~DkfGNkYyen~~~fyg---RhRWVeya~kv~~Dyd~S~VP~EWh~WlH~iTD~~p~~~  107 (151)
T KOG3382|consen   42 DDHKIGTLVGVDKFGNKYYENNDYFYG---RHRWVEYASKVNWDYDASQVPAEWHGWLHFITDDPPDEK  107 (151)
T ss_pred             ccccceeeeeecccccchhcccceecc---cceeEEecccccccccccCCCHHHHhHhHhhccCCcccc
Confidence            377889999999999999999988888   699999972    89999999999999999999999854


No 7  
>COG3761 NADH:ubiquinone oxidoreductase 17.2 kD subunit [Energy production and conversion]
Probab=99.81  E-value=6.3e-21  Score=145.51  Aligned_cols=74  Identities=24%  Similarity=0.604  Sum_probs=60.0

Q ss_pred             ChHHHHHHhcCCCCCeEeeeeCCCCeEeecC-ccCCCCCccceeEEcCCCCCCCcCChhhHhhhhcCCCCCCChHHHHH
Q 030140            1 MSRLLARIAGFFSSRTQVGVDKAGNRYFTRT-EELDGRMKEKRWVVFKGEQDPTSVPVEWICWLNGQRKIAPTPEEIAE   78 (182)
Q Consensus         1 m~rl~~~~~~~~~~~~~VG~D~~GNkYYE~~-~~~~G~~r~rRwV~y~~~~d~s~IPpeW~~WL~~~r~~pPT~eEi~~   78 (182)
                      |+++-+-|..+|-  .-||+|.|||.|||.. ..+.|  |.||||+|++..+++.|||.||+||||+.++||+.+.+..
T Consensus         1 ftWwnqt~gTrfh--~kvGeDefgN~Yye~r~~ds~g--r~RRwVIYngyaEas~IPp~WhgWlHh~vd~~P~~~~~~~   75 (118)
T COG3761           1 FTWWNQTFGTRFH--KKVGEDEFGNVYYEGRNIDSEG--RTRRWVIYNGYAEASKIPPGWHGWLHHRVDEPPKSEQLFP   75 (118)
T ss_pred             CchHHhHHHHHHH--HhccchhccceeeeccCCccCC--CeeeEEEEcCcchhccCCCchhhhhhhhccCCccccccch
Confidence            4555544444443  6799999999999985 34455  7999999999999999999999999999999999776543


No 8  
>PF15613 WHIM2:  WSTF, HB1, Itc1p, MBD9 motif 2
Probab=91.94  E-value=0.17  Score=32.31  Aligned_cols=30  Identities=27%  Similarity=0.419  Sum_probs=19.2

Q ss_pred             eEeeeeCCCCeEeecCcc-C-CCCCccceeEE
Q 030140           16 TQVGVDKAGNRYFTRTEE-L-DGRMKEKRWVV   45 (182)
Q Consensus        16 ~~VG~D~~GNkYYE~~~~-~-~G~~r~rRwV~   45 (182)
                      ..+|.|.+||+||-...+ . .+.....+||+
T Consensus         3 ~pLG~DR~~NrYwwf~~s~~~~~~~~~~~~v~   34 (38)
T PF15613_consen    3 KPLGKDRYGNRYWWFSSSSSNSQYYNGGRFVE   34 (38)
T ss_pred             ccccccCCCceEEEEecccccCCCCCceEEEE
Confidence            458999999999998321 1 11123466765


No 9  
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.82  E-value=31  Score=31.36  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030140           77 AELEARRERVKLNVALLKKEEKEKR  101 (182)
Q Consensus        77 ~~~~~rre~~K~~a~~le~ke~~~~  101 (182)
                      .+.++++++++.|+++|+.+|++.+
T Consensus        67 ~eL~~rqeEL~Rke~ELdRREr~~a   91 (313)
T KOG3088|consen   67 AELLKKQEELRRKEQELDRRERALA   91 (313)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHh
Confidence            3567788899999999999988876


No 10 
>PF15136 UPF0449:  Uncharacterised protein family UPF0449
Probab=43.70  E-value=17  Score=27.74  Aligned_cols=17  Identities=35%  Similarity=0.268  Sum_probs=14.0

Q ss_pred             cCCCCCCChHHHHHHHH
Q 030140           65 GQRKIAPTPEEIAELEA   81 (182)
Q Consensus        65 ~~r~~pPT~eEi~~~~~   81 (182)
                      .+|..|||.|.|+.|..
T Consensus         8 PtRP~PPTvEqILEDv~   24 (97)
T PF15136_consen    8 PTRPEPPTVEQILEDVR   24 (97)
T ss_pred             CCCCCCCCHHHHHHHHh
Confidence            47999999999998543


No 11 
>PF06631 DUF1154:  Protein of unknown function (DUF1154);  InterPro: IPR009535  This entry represents group a 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta conserved site.; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0006629 lipid metabolic process
Probab=43.12  E-value=56  Score=21.84  Aligned_cols=28  Identities=21%  Similarity=0.086  Sum_probs=24.9

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030140           68 KIAPTPEEIAELEARRERVKLNVALLKK   95 (182)
Q Consensus        68 ~~pPT~eEi~~~~~rre~~K~~a~~le~   95 (182)
                      -.|+|+|+|..+.++...+|....+++.
T Consensus         6 ~~pi~le~Lk~~K~y~Kl~KKq~KEl~~   33 (47)
T PF06631_consen    6 VEPITLEELKQHKAYVKLLKKQQKELEE   33 (47)
T ss_pred             CCCCCHHHHHHhHHHHHHHHHHHHHHHH
Confidence            4789999999999999999988888775


No 12 
>PF06739 SBBP:  Beta-propeller repeat;  InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=26.47  E-value=45  Score=20.62  Aligned_cols=16  Identities=38%  Similarity=0.571  Sum_probs=12.6

Q ss_pred             CeEeeeeCCCCeEeec
Q 030140           15 RTQVGVDKAGNRYFTR   30 (182)
Q Consensus        15 ~~~VG~D~~GNkYYE~   30 (182)
                      ..=|..|..||-|---
T Consensus        15 ~~~IavD~~GNiYv~G   30 (38)
T PF06739_consen   15 GNGIAVDSNGNIYVTG   30 (38)
T ss_pred             EEEEEECCCCCEEEEE
Confidence            3568899999998653


No 13 
>PF11385 DUF3189:  Protein of unknown function (DUF3189);  InterPro: IPR021525  This family of proteins with unknown function appears to be restricted to Firmicutes 
Probab=23.73  E-value=57  Score=26.33  Aligned_cols=16  Identities=25%  Similarity=0.428  Sum_probs=14.4

Q ss_pred             eEeeeeCCCCeEeecC
Q 030140           16 TQVGVDKAGNRYFTRT   31 (182)
Q Consensus        16 ~~VG~D~~GNkYYE~~   31 (182)
                      .++|+|.+||.=|-.-
T Consensus        53 ~y~G~De~gn~VY~lG   68 (148)
T PF11385_consen   53 IYMGTDEYGNEVYILG   68 (148)
T ss_pred             EEEEEcCCCCEEEEEe
Confidence            7899999999999864


No 14 
>COG2924 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.61  E-value=55  Score=24.60  Aligned_cols=37  Identities=19%  Similarity=0.223  Sum_probs=23.7

Q ss_pred             hhhHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030140           57 VEWICWLNGQRKIAPTPEEIAELEARRERVKLNVALLKKEEKEKR  101 (182)
Q Consensus        57 peW~~WL~~~r~~pPT~eEi~~~~~rre~~K~~a~~le~ke~~~~  101 (182)
                      -.|.+|++|..        ++-|+.+-..+-.....+-+++-..-
T Consensus        37 ~aWa~W~~~QT--------MLINE~rLnm~n~e~Rk~Leqem~~f   73 (90)
T COG2924          37 EAWAQWQKKQT--------MLINEKRLNMMNAEHRKLLEQEMVNF   73 (90)
T ss_pred             HHHHHHHHhhh--------eeechhhcCcCCHHHHHHHHHHHHHH
Confidence            47999999973        56666666666555555555544443


No 15 
>PF11461 RILP:  Rab interacting lysosomal protein;  InterPro: IPR021563  RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=22.63  E-value=1.2e+02  Score=21.13  Aligned_cols=30  Identities=30%  Similarity=0.339  Sum_probs=20.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030140           72 TPEEIAELEARRERVKLNVALLKKEEKEKR  101 (182)
Q Consensus        72 T~eEi~~~~~rre~~K~~a~~le~ke~~~~  101 (182)
                      |.+|+..-...|+.+|.++-+++++=..-+
T Consensus         1 Tl~ELr~VL~ERNeLK~~v~~leEEL~~yk   30 (60)
T PF11461_consen    1 TLQELREVLQERNELKARVFLLEEELAYYK   30 (60)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            567788888888888888888876544433


No 16 
>cd01717 Sm_B The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation.  Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit B heterodimerizes with subunit D3 and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits.  The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits.  Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=21.82  E-value=50  Score=23.38  Aligned_cols=17  Identities=18%  Similarity=0.102  Sum_probs=13.4

Q ss_pred             CCeEeeeeCCCCeEeec
Q 030140           14 SRTQVGVDKAGNRYFTR   30 (182)
Q Consensus        14 ~~~~VG~D~~GNkYYE~   30 (182)
                      .|+|+|.|.|.|-=-+.
T Consensus        24 ~G~L~~~D~~~NlVL~~   40 (79)
T cd01717          24 VGQFLAFDKHMNLVLSD   40 (79)
T ss_pred             EEEEEEEcCccCEEcCC
Confidence            46999999999976443


Done!