Query 030140
Match_columns 182
No_of_seqs 177 out of 499
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 14:40:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yy0_A C-MYC-binding protein; 42.6 56 0.0019 21.0 5.1 35 69-103 14-48 (53)
2 1s4k_A Putative cytoplasmic pr 17.0 1.1E+02 0.0037 23.2 3.2 26 57-82 33-58 (120)
3 1d3b_B Protein (small nuclear 13.9 62 0.0021 22.2 1.1 18 14-31 28-45 (91)
4 1yhn_B RILP, RAB interacting l 11.6 2.1E+02 0.0073 19.3 3.2 25 72-96 1-25 (65)
5 3s6n_G Small nuclear ribonucle 10.9 96 0.0033 20.6 1.3 18 14-31 28-45 (76)
6 1tk7_A CG4244-PB; WW domain, n 10.4 2.6E+02 0.009 19.0 3.5 44 12-60 13-62 (88)
7 1h64_1 SnRNP SM-like protein; 10.0 1.1E+02 0.0037 20.1 1.3 18 14-31 28-45 (75)
8 2odb_B Serine/threonine-protei 9.5 1.1E+02 0.0036 17.8 1.0 10 54-63 25-34 (35)
9 1i17_A Mouse doppel, prion-lik 9.4 21 0.00072 26.3 -2.7 10 22-31 23-32 (107)
10 3bw1_A SMX4 protein, U6 snRNA- 8.9 1.2E+02 0.0042 21.1 1.3 18 14-31 34-51 (96)
No 1
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.62 E-value=56 Score=21.04 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=29.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030140 69 IAPTPEEIAELEARRERVKLNVALLKKEEKEKRAK 103 (182)
Q Consensus 69 ~pPT~eEi~~~~~rre~~K~~a~~le~ke~~~~~~ 103 (182)
..|+..++-......+.+|+++..|.++..+++++
T Consensus 14 ~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 14 ATPENPEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999999999999988887653
No 2
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, PROT structure initiative; 1.90A {Salmonella typhimurium} SCOP: a.35.1.6
Probab=16.99 E-value=1.1e+02 Score=23.22 Aligned_cols=26 Identities=19% Similarity=0.320 Sum_probs=21.4
Q ss_pred hhhHhhhhcCCCCCCChHHHHHHHHH
Q 030140 57 VEWICWLNGQRKIAPTPEEIAELEAR 82 (182)
Q Consensus 57 peW~~WL~~~r~~pPT~eEi~~~~~r 82 (182)
..|..|=.+.+..||...+.+.....
T Consensus 33 rtWQqWE~G~~~IP~~i~e~~~~m~~ 58 (120)
T 1s4k_A 33 ATWQRWEAGDIPISPEIIARLKEMKA 58 (120)
T ss_dssp HHHHHHHHTSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHH
Confidence 47999999999999998887774443
No 3
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=13.93 E-value=62 Score=22.21 Aligned_cols=18 Identities=22% Similarity=0.025 Sum_probs=14.4
Q ss_pred CCeEeeeeCCCCeEeecC
Q 030140 14 SRTQVGVDKAGNRYFTRT 31 (182)
Q Consensus 14 ~~~~VG~D~~GNkYYE~~ 31 (182)
.|+|+|.|.+.|---+.-
T Consensus 28 ~G~L~~~D~~mNlvL~d~ 45 (91)
T 1d3b_B 28 IGTFKAFDKHMNLILCDC 45 (91)
T ss_dssp EEEEEECCTTCCEEEEEE
T ss_pred EEEEEEECCCCeEEecCE
Confidence 478999999999766543
No 4
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=11.64 E-value=2.1e+02 Score=19.33 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=18.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 030140 72 TPEEIAELEARRERVKLNVALLKKE 96 (182)
Q Consensus 72 T~eEi~~~~~rre~~K~~a~~le~k 96 (182)
|.+|+..-...|+.+|.++-.++++
T Consensus 1 T~~Elr~iLqERNELKa~vf~lqeE 25 (65)
T 1yhn_B 1 SREEFEQILQERNELKAKVFLLKEE 25 (65)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777888888887777654
No 5
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=10.89 E-value=96 Score=20.65 Aligned_cols=18 Identities=17% Similarity=0.028 Sum_probs=15.1
Q ss_pred CCeEeeeeCCCCeEeecC
Q 030140 14 SRTQVGVDKAGNRYFTRT 31 (182)
Q Consensus 14 ~~~~VG~D~~GNkYYE~~ 31 (182)
.|+|+|.|.+-|---+.-
T Consensus 28 ~G~L~~~D~~mNlvL~~~ 45 (76)
T 3s6n_G 28 QGILRGFDPFMNLVIDEC 45 (76)
T ss_dssp EEEEEEECTTCCEEEEEE
T ss_pred EEEEEEECCcceEEEece
Confidence 468999999999987765
No 6
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=10.41 E-value=2.6e+02 Score=18.98 Aligned_cols=44 Identities=11% Similarity=0.366 Sum_probs=27.3
Q ss_pred CCCCeEeeeeCCCCeEeecCccCCCCCccceeEEcCCCC------CCCcCChhhH
Q 030140 12 FSSRTQVGVDKAGNRYFTRTEELDGRMKEKRWVVFKGEQ------DPTSVPVEWI 60 (182)
Q Consensus 12 ~~~~~~VG~D~~GNkYYE~~~~~~G~~r~rRwV~y~~~~------d~s~IPpeW~ 60 (182)
+-.+.-+..|..|..||-+... +...|....... ....+|+.|+
T Consensus 13 LP~gWe~~~~~~Gr~Yy~n~~t-----~~t~W~~P~~~~~~~~~~~~~~LP~gWe 62 (88)
T 1tk7_A 13 LPDGWEKKIQSDNRVYFVNHKN-----RTTQWEDPRTQGQEVSLINEGPLPPGWE 62 (88)
T ss_dssp SSSSCCEEEETTTEEEEEETTT-----TEEEEESCCCTTTCCHHHHSCSSCSSCE
T ss_pred CCCCcEEEECCCCCEEEEECCC-----CCeEeecccccccccccccccccCCceE
Confidence 4455667788999999987532 456676554211 1245677775
No 7
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=9.96 E-value=1.1e+02 Score=20.12 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=15.0
Q ss_pred CCeEeeeeCCCCeEeecC
Q 030140 14 SRTQVGVDKAGNRYFTRT 31 (182)
Q Consensus 14 ~~~~VG~D~~GNkYYE~~ 31 (182)
.|+|+|.|.+-|---+.-
T Consensus 28 ~G~L~~~D~~mNlvL~d~ 45 (75)
T 1h64_1 28 RGRLIGYDIHLNVVLADA 45 (75)
T ss_dssp EEEEEEECTTCCEEEEEE
T ss_pred EEEEEEEeCCCCeEEeeE
Confidence 468999999999887764
No 8
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}
Probab=9.47 E-value=1.1e+02 Score=17.81 Aligned_cols=10 Identities=30% Similarity=0.747 Sum_probs=7.4
Q ss_pred cCChhhHhhh
Q 030140 54 SVPVEWICWL 63 (182)
Q Consensus 54 ~IPpeW~~WL 63 (182)
-+|++|..-|
T Consensus 25 Glp~eW~~ll 34 (35)
T 2odb_B 25 GLPPQWQNIL 34 (35)
T ss_dssp SCCHHHHHHH
T ss_pred CCCHHHHHHh
Confidence 5788887755
No 9
>1i17_A Mouse doppel, prion-like protein; DPL, unknown function; NMR {Mus musculus} SCOP: d.6.1.1
Probab=9.40 E-value=21 Score=26.33 Aligned_cols=10 Identities=40% Similarity=0.936 Sum_probs=7.9
Q ss_pred CCCCeEeecC
Q 030140 22 KAGNRYFTRT 31 (182)
Q Consensus 22 ~~GNkYYE~~ 31 (182)
..||+|||..
T Consensus 23 aegNrYYean 32 (107)
T 1i17_A 23 AEGNRYYAAN 32 (107)
T ss_dssp HHHHHHHHHH
T ss_pred cccchhhhhc
Confidence 3589999965
No 10
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=8.90 E-value=1.2e+02 Score=21.15 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=14.1
Q ss_pred CCeEeeeeCCCCeEeecC
Q 030140 14 SRTQVGVDKAGNRYFTRT 31 (182)
Q Consensus 14 ~~~~VG~D~~GNkYYE~~ 31 (182)
.|.|+|.|.+-|---+.-
T Consensus 34 ~G~L~~fD~~mNlVL~d~ 51 (96)
T 3bw1_A 34 VGTLQAFDSHCNIVLSDA 51 (96)
T ss_dssp EEEEEEECTTCCEEEEEE
T ss_pred EEEEEEECCCCcEEEcCE
Confidence 479999999999765543
Done!