Query 030140
Match_columns 182
No_of_seqs 177 out of 499
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 14:40:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030140.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030140hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d3bb_ b.38.1.1 (B:) B core S 25.5 11 0.00082 24.2 1.1 18 13-30 21-38 (81)
2 d1ej5a_ a.68.1.1 (A:) Wiscott- 21.6 50 0.0037 22.7 4.1 65 50-118 17-84 (107)
3 d1h641_ b.38.1.1 (1:) Archaeal 14.6 30 0.0022 21.2 1.3 18 14-31 26-43 (71)
4 d2c4ba1 d.1.1.2 (A:3-110) Barn 13.8 56 0.0041 22.5 2.7 32 14-45 45-88 (108)
5 d1i4k1_ b.38.1.1 (1:) Archaeal 13.5 34 0.0024 21.1 1.3 18 14-31 27-44 (72)
6 d1i8fa_ b.38.1.1 (A:) Archaeal 12.2 39 0.0028 20.9 1.3 18 14-31 26-43 (71)
7 d2fwka1 b.38.1.1 (A:24-115) U6 11.7 48 0.0035 21.3 1.7 18 14-31 29-46 (92)
8 d1b34b_ b.38.1.1 (B:) D2 core 10.5 47 0.0034 21.7 1.3 18 14-31 28-45 (93)
9 d1th7a1 b.38.1.1 (A:3-78) Arch 10.0 51 0.0037 20.5 1.3 18 14-31 31-48 (76)
10 d1mgqa_ b.38.1.1 (A:) Archaeal 10.0 51 0.0037 20.3 1.3 18 14-31 30-47 (74)
No 1
>d1d3bb_ b.38.1.1 (B:) B core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.48 E-value=11 Score=24.16 Aligned_cols=18 Identities=22% Similarity=-0.018 Sum_probs=14.3
Q ss_pred CCCeEeeeeCCCCeEeec
Q 030140 13 SSRTQVGVDKAGNRYFTR 30 (182)
Q Consensus 13 ~~~~~VG~D~~GNkYYE~ 30 (182)
-.|+|+|.|.++|---+.
T Consensus 21 ~~G~L~~~D~~~NlvL~~ 38 (81)
T d1d3bb_ 21 FIGTFKAFDKHMNLILCD 38 (81)
T ss_dssp EEEEEEECCTTCCEEEEE
T ss_pred EEEEEEEECCccCEEEcC
Confidence 357999999999976553
No 2
>d1ej5a_ a.68.1.1 (A:) Wiscott-Aldrich syndrome protein, WASP, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.57 E-value=50 Score=22.72 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=33.2
Q ss_pred CCCCcCChhhHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcCCCCccccCCccCC
Q 030140 50 QDPTSVPVEWICWLNGQRKIAPTPEEIAELEARRERVKLNVAL---LKKEEKEKRAKEGTIPKRTSSGIVGG 118 (182)
Q Consensus 50 ~d~s~IPpeW~~WL~~~r~~pPT~eEi~~~~~rre~~K~~a~~---le~ke~~~~~~e~~~~~~~~~G~~~~ 118 (182)
|+-+-||++|...|...-. |.++| +|..-+.-|..=+.. +++-.++++-.-++.-..-+.|++++
T Consensus 17 f~~~glp~eW~~lL~~sGI---sk~~l-kd~et~~~I~~Fiek~gG~e~v~~e~~~~g~~~~~~ss~Gli~s 84 (107)
T d1ej5a_ 17 FDVNNLDPDLRSLFSRAGI---SEAQL-TDAETSKLIYDFIEDQGGLEAVRQEMRRQGGSGGSQSSEGLVGA 84 (107)
T ss_dssp CCTTTCCHHHHHHHHHTTC---CHHHH-SCHHHHHHHHHHHHHTTHHHHHHHHHHHTTTSSSSCTTTTHHHH
T ss_pred ccccCCCHHHHHHHHHcCC---CHHHh-cCHHHHHHHHHHHHHcCChHHHHHHHHHHccccccccchhHHHH
Confidence 4556899999999987643 45554 554443343322221 22222333323344344445566543
No 3
>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=14.56 E-value=30 Score=21.22 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=15.3
Q ss_pred CCeEeeeeCCCCeEeecC
Q 030140 14 SRTQVGVDKAGNRYFTRT 31 (182)
Q Consensus 14 ~~~~VG~D~~GNkYYE~~ 31 (182)
.|+|+|.|.+.|-.-..-
T Consensus 26 ~G~L~~~D~~mNlvL~~~ 43 (71)
T d1h641_ 26 RGRLIGYDIHLNVVLADA 43 (71)
T ss_dssp EEEEEEECTTCCEEEEEE
T ss_pred EEEEEEECCCCCeEEeeE
Confidence 479999999999987764
No 4
>d2c4ba1 d.1.1.2 (A:3-110) Barnase {Bacillus amyloliquefaciens [TaxId: 1390]}
Probab=13.79 E-value=56 Score=22.54 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=20.2
Q ss_pred CCeEeeeeCCCC-----------eEeecCccCCC-CCccceeEE
Q 030140 14 SRTQVGVDKAGN-----------RYFTRTEELDG-RMKEKRWVV 45 (182)
Q Consensus 14 ~~~~VG~D~~GN-----------kYYE~~~~~~G-~~r~rRwV~ 45 (182)
.+..+|=|.||| .|+|..-+..| .+..+|+|.
T Consensus 45 pgk~IGG~~F~NrE~~LP~~~~~~y~E~dV~~~g~~RGa~RIV~ 88 (108)
T d2c4ba1 45 PGKSIGGDIFSNREGKLPGKSGRTWREADINYTSGFRNSDRILY 88 (108)
T ss_dssp TTCEEEEEEECCTTCCSCCCTTCCEEEEECSCCSSSCCSCEEEE
T ss_pred CCccccccccccCcCCCCCCCCCeEEEEEeCCCCCCCCCceEEE
Confidence 567899999999 46665422233 334567664
No 5
>d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]}
Probab=13.52 E-value=34 Score=21.14 Aligned_cols=18 Identities=22% Similarity=0.041 Sum_probs=15.6
Q ss_pred CCeEeeeeCCCCeEeecC
Q 030140 14 SRTQVGVDKAGNRYFTRT 31 (182)
Q Consensus 14 ~~~~VG~D~~GNkYYE~~ 31 (182)
.|+|.|.|.+.|-.-++-
T Consensus 27 ~G~L~~~D~~mNlvL~~~ 44 (72)
T d1i4k1_ 27 RGTLDGYDIHMNLVLLDA 44 (72)
T ss_dssp EEEEEEECTTCCEEEEEE
T ss_pred EEEEEEEcCCCCeEEeeE
Confidence 479999999999988765
No 6
>d1i8fa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=12.23 E-value=39 Score=20.94 Aligned_cols=18 Identities=11% Similarity=0.021 Sum_probs=15.3
Q ss_pred CCeEeeeeCCCCeEeecC
Q 030140 14 SRTQVGVDKAGNRYFTRT 31 (182)
Q Consensus 14 ~~~~VG~D~~GNkYYE~~ 31 (182)
.|+|+|.|.+.|---+.-
T Consensus 26 ~G~L~~~D~~mNivL~~~ 43 (71)
T d1i8fa_ 26 RGILRSFDQHVNLLLEDA 43 (71)
T ss_dssp EEEEEEECTTCCEEEEEE
T ss_pred EEEEEEECCCcceEEccE
Confidence 479999999999987765
No 7
>d2fwka1 b.38.1.1 (A:24-115) U6 snRNA-associated sm-like protein LSM5 {Cryptosporidium parvum [TaxId: 5807]}
Probab=11.72 E-value=48 Score=21.31 Aligned_cols=18 Identities=22% Similarity=0.139 Sum_probs=15.3
Q ss_pred CCeEeeeeCCCCeEeecC
Q 030140 14 SRTQVGVDKAGNRYFTRT 31 (182)
Q Consensus 14 ~~~~VG~D~~GNkYYE~~ 31 (182)
.|+|++.|.+.|---+.-
T Consensus 29 ~G~L~~~D~~~NlvL~d~ 46 (92)
T d2fwka1 29 SGVLRGFDEYVNMVLDDV 46 (92)
T ss_dssp CCEEEEECTTCCEEEESC
T ss_pred EEEEEEEcCCCCEEEeeE
Confidence 579999999999887754
No 8
>d1b34b_ b.38.1.1 (B:) D2 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.50 E-value=47 Score=21.71 Aligned_cols=18 Identities=11% Similarity=0.038 Sum_probs=14.2
Q ss_pred CCeEeeeeCCCCeEeecC
Q 030140 14 SRTQVGVDKAGNRYFTRT 31 (182)
Q Consensus 14 ~~~~VG~D~~GNkYYE~~ 31 (182)
.|+++|.|+|-|-=-+.-
T Consensus 28 ~G~L~afD~~~NlVL~d~ 45 (93)
T d1b34b_ 28 LGRVKAFDRHCNMVLENV 45 (93)
T ss_dssp EEEEEEECTTCCEEEEEE
T ss_pred EEEEEEeccceeEEeece
Confidence 368999999999876543
No 9
>d1th7a1 b.38.1.1 (A:3-78) Archaeal homoheptameric Sm protein {Sulfolobus solfataricus [TaxId: 2287]}
Probab=10.01 E-value=51 Score=20.48 Aligned_cols=18 Identities=11% Similarity=0.021 Sum_probs=15.1
Q ss_pred CCeEeeeeCCCCeEeecC
Q 030140 14 SRTQVGVDKAGNRYFTRT 31 (182)
Q Consensus 14 ~~~~VG~D~~GNkYYE~~ 31 (182)
.|.|+|.|.+.|---+.-
T Consensus 31 ~G~L~~~D~~mNlvL~~~ 48 (76)
T d1th7a1 31 RGMLRSYDQHMNLVLSDS 48 (76)
T ss_dssp EEEEEEECTTCCEEEEEE
T ss_pred EEEEEEECCCCCEEEeEE
Confidence 479999999999887754
No 10
>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=10.00 E-value=51 Score=20.32 Aligned_cols=18 Identities=11% Similarity=-0.042 Sum_probs=15.5
Q ss_pred CCeEeeeeCCCCeEeecC
Q 030140 14 SRTQVGVDKAGNRYFTRT 31 (182)
Q Consensus 14 ~~~~VG~D~~GNkYYE~~ 31 (182)
.|.|+|.|.+.|-.-+.-
T Consensus 30 ~G~L~~~D~~mNl~L~~~ 47 (74)
T d1mgqa_ 30 RGVLKSFDLHMNLVLNDA 47 (74)
T ss_dssp EEEEEEECTTCCEEEEEE
T ss_pred EEEEEEECCCCCeEEeeE
Confidence 479999999999988765
Done!