BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030144
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GCU|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|C Chain C, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|D Chain D, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
Length = 245
Score = 166 bits (421), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/119 (69%), Positives = 93/119 (78%)
Query: 60 KLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTH 119
KLLFRQ FE ESST+TYLLADV+HPDKPALLIDPVDKTVDRDL +I ELGLKL+YAMNTH
Sbjct: 2 KLLFRQLFENESSTFTYLLADVSHPDKPALLIDPVDKTVDRDLKLIDELGLKLIYAMNTH 61
Query: 120 VHADHVTGTGLIKSKVPGVXXXXXXXXXXXXDLHVEHGDKVSFGDLFLEVCIVGGFQAA 178
VHADHVTGTGL+K+K+PGV DL +E GDKVS GD++LEV G A
Sbjct: 62 VHADHVTGTGLLKTKLPGVKSVISKASGSKADLFLEPGDKVSIGDIYLEVRATPGHTAG 120
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 61 LLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHV 120
+ F+Q ++K S +YL+ A++IDP+ + + + V E GL + +A TH+
Sbjct: 25 MFFKQFYDKHLSQASYLIG--CQKTGEAMIIDPI-RDLSSYIRVADEEGLTITHAAETHI 81
Query: 121 HADHVTG 127
HAD +G
Sbjct: 82 HADFASG 88
>pdb|4EFZ|A Chain A, Crystal Structure Of A Hypothetical Metallo-Beta-Lactamase
From Burkholderia Pseudomallei
pdb|4EFZ|B Chain B, Crystal Structure Of A Hypothetical Metallo-Beta-Lactamase
From Burkholderia Pseudomallei
Length = 298
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 13/82 (15%)
Query: 67 FEKESSTYTYLLADVNHPDKPALLIDPV-----------DKTVDRDLNVIKELGLKLVYA 115
F+ + T +YLL D + LID V + D+ + + LG ++ +
Sbjct: 11 FDPATCTISYLLFDSGSGE--CALIDSVLDYDPKSGRTRTASADQLIARVAALGARVRWL 68
Query: 116 MNTHVHADHVTGTGLIKSKVPG 137
+ THVHADH++ +K++V G
Sbjct: 69 LETHVHADHLSAAPYLKTRVGG 90
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 88 ALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGT 128
A +IDP + V+ L K GL++V A+ TH+HAD V+G
Sbjct: 29 ACVIDPA-RDVEPYLLTAKREGLRIVAALETHIHADFVSGA 68
>pdb|1XM8|A Chain A, X-Ray Structure Of Glyoxalase Ii From Arabidopsis Thaliana
Gene At2g31350
pdb|1XM8|B Chain B, X-Ray Structure Of Glyoxalase Ii From Arabidopsis Thaliana
Gene At2g31350
pdb|2Q42|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Glyoxalase Ii From Arabidopsis Thaliana Gene At2g31350
pdb|2Q42|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Glyoxalase Ii From Arabidopsis Thaliana Gene At2g31350
Length = 254
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 30/105 (28%)
Query: 73 TYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADH-------- 124
Y Y+L D + ++DP + + ++ +K G L Y +NTH H DH
Sbjct: 12 NYAYILHDED--TGTVGVVDPSE--AEPIIDSLKRSGRNLTYILNTHHHYDHTGGNLELK 67
Query: 125 ------VTGTGLIKSKVPGVXXXXXXXXXXXXDLHVEHGDKVSFG 163
V G+ + K ++PG+ D+ ++ GDK F
Sbjct: 68 DRYGAKVIGSAMDKDRIPGI------------DMALKDGDKWMFA 100
>pdb|3DHA|A Chain A, An Ultral High Resolution Structure Of N-Acyl Homoserine
Lactone Hydrolase With The Product
N-Hexanoyl-L-Homoserine Bound At An Alternative Site
pdb|3DHB|A Chain A, 1.4 Angstrom Structure Of N-Acyl Homoserine Lactone
Hydrolase With The Product N-Hexanoyl-L-Homoserine Bound
At The Catalytic Metal Center
pdb|3DHC|A Chain A, 1.3 Angstrom Structure Of N-Acyl Homoserine Lactone
Hydrolase With The Product N-Hexanoyl-L-Homocysteine
Bound To The Catalytic Metal Center
Length = 254
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 99 DRDLNVIKELGLK---LVYAMNTHVHADHVTGTG 129
DR +N++K +G + L+Y +++H+H DH G G
Sbjct: 85 DRIVNILKRVGYEPDDLLYIISSHLHFDHAGGNG 118
>pdb|2A7M|A Chain A, 1.6 Angstrom Resolution Structure Of The Quorum-Quenching
N-Acyl Homoserine Lactone Hydrolase Of Bacillus
Thuringiensis
Length = 250
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 99 DRDLNVIKELGLK---LVYAMNTHVHADHVTGTG 129
DR +N++K +G + L+Y +++H+H DH G G
Sbjct: 81 DRIVNILKRVGYEPDDLLYIISSHLHFDHAGGNG 114
>pdb|2BR6|A Chain A, Crystal Structure Of Quorum-Quenching N-Acyl Homoserine
Lactone Lactonase
pdb|2BTN|A Chain A, Crystal Structure And Catalytic Mechanism Of The Quorum-
Quenching N-Acyl Homoserine Lactone Hydrolase
Length = 252
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 99 DRDLNVIKELGLK---LVYAMNTHVHADHVTGTG 129
DR +N++K +G + L+Y +++H+H DH G G
Sbjct: 83 DRIVNILKRVGYEPDDLLYIISSHLHFDHAGGNG 116
>pdb|1QH3|A Chain A, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH3|B Chain B, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH5|A Chain A, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
pdb|1QH5|B Chain B, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
Length = 260
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTG 127
+ Y YL+ D K A ++DPV + ++ ++ G+KL + TH H DH G
Sbjct: 10 TDNYMYLVIDDE--TKEAAIVDPVQP--QKVVDAARKHGVKLTTVLTTHHHWDHAGG 62
>pdb|2P18|A Chain A, Crystal Structure Of The Leishmania Infantum Glyoxalase Ii
pdb|2P1E|A Chain A, Crystal Structure Of The Leishmania Infantum Glyoxalase Ii
With D- Lactate At The Active Site
Length = 311
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 11/108 (10%)
Query: 69 KESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGT 128
+ +T+T DVN KP L +++ + + N ++ ++TH H DH G
Sbjct: 46 NDHTTHTLAAVDVNADYKPILTY--IEEHLKQQGNA--DVTYTFSTILSTHKHWDHSGGN 101
Query: 129 GLIK-------SKVPGVXXXXXXXXXXXXDLHVEHGDKVSFGDLFLEV 169
+K S VP V V GD+V GDL +EV
Sbjct: 102 AKLKAELEAMNSTVPVVVVGGANDSIPAVTKPVREGDRVQVGDLSVEV 149
>pdb|2FUG|7 Chain 7, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|H Chain H, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|Q Chain Q, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|Z Chain Z, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|7 Chain 7, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|H Chain H, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|7 Chain 7, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|H Chain H, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|7 Chain 7, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|H Chain H, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|Q Chain Q, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|Z Chain Z, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|7 Chain 7, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|J Chain J, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|7 Chain 7, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|7 Chain 7, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|I Chain I, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 129
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 105 IKELGLKLVYAMNTHVHADHVTGTGLIKSKVP 136
+K +GL+L A + H+HA + G GL+ K+P
Sbjct: 79 LKRIGLRLPRA-HIHLHAHYEPGKGLVTGKIP 109
>pdb|2BIB|A Chain A, Crystal Structure Of The Complete Modular Teichioic Acid
Phosphorylcholine Esterase Pce (Cbpe) From Streptococcus
Pneumoniae
Length = 547
Score = 27.7 bits (60), Expect = 4.2, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 99 DRDLNVIKELGL-KLVYAMNTHVHADHVTGTGLIKSKVP 136
DR +KEL + KL + + TH H+DH+ + S P
Sbjct: 64 DRVFRRLKELSVQKLDFILVTHTHSDHIGNVDELLSTYP 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,018,094
Number of Sequences: 62578
Number of extensions: 128076
Number of successful extensions: 300
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 20
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)