Query 030144
Match_columns 182
No_of_seqs 289 out of 1678
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 09:13:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030144.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030144hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02962 hydroxyacylglutathion 100.0 1.8E-27 3.9E-32 191.4 15.8 127 55-181 5-131 (251)
2 PLN02469 hydroxyacylglutathion 99.9 1.1E-24 2.3E-29 176.2 14.5 108 70-181 9-118 (258)
3 PLN02398 hydroxyacylglutathion 99.9 5.2E-24 1.1E-28 176.8 14.9 120 56-181 70-193 (329)
4 PRK10241 hydroxyacylglutathion 99.9 2.6E-23 5.6E-28 167.6 14.5 107 70-181 9-116 (251)
5 TIGR03413 GSH_gloB hydroxyacyl 99.9 2.2E-22 4.7E-27 161.9 13.9 106 70-181 7-113 (248)
6 KOG0813 Glyoxylase [General fu 99.9 1.2E-21 2.7E-26 156.6 10.8 110 68-181 8-123 (265)
7 KOG0814 Glyoxylase [General fu 99.8 3.2E-21 6.9E-26 144.6 4.7 118 61-180 9-126 (237)
8 PRK11921 metallo-beta-lactamas 99.8 1.7E-18 3.8E-23 147.7 11.7 109 68-181 28-149 (394)
9 COG0491 GloB Zn-dependent hydr 99.7 1.7E-17 3.7E-22 130.9 12.0 109 70-181 22-154 (252)
10 PRK05452 anaerobic nitric oxid 99.7 3E-17 6.5E-22 143.1 11.5 109 68-181 30-153 (479)
11 smart00849 Lactamase_B Metallo 99.7 1.6E-16 3.5E-21 120.1 12.1 106 70-180 3-128 (183)
12 TIGR00649 MG423 conserved hypo 99.6 1E-14 2.3E-19 125.5 11.8 107 70-180 11-142 (422)
13 COG0426 FpaA Uncharacterized f 99.5 1.1E-13 2.4E-18 116.4 11.8 108 68-180 31-151 (388)
14 PF00753 Lactamase_B: Metallo- 99.5 5.6E-14 1.2E-18 105.8 6.7 107 70-180 3-131 (194)
15 PRK11539 ComEC family competen 99.4 1.8E-11 4E-16 112.3 14.8 109 60-176 500-614 (755)
16 TIGR03675 arCOG00543 arCOG0054 99.3 6.1E-12 1.3E-16 113.0 9.3 115 61-180 175-328 (630)
17 TIGR00361 ComEC_Rec2 DNA inter 99.3 4.4E-11 9.5E-16 108.4 12.6 106 61-172 440-553 (662)
18 COG0595 mRNA degradation ribon 99.2 5.1E-11 1.1E-15 105.1 10.6 117 60-180 8-150 (555)
19 PRK02126 ribonuclease Z; Provi 99.2 5E-11 1.1E-15 99.8 8.7 75 64-145 7-85 (334)
20 COG1237 Metal-dependent hydrol 99.2 3.9E-11 8.5E-16 95.6 7.3 68 73-145 22-93 (259)
21 PRK04286 hypothetical protein; 99.2 1E-10 2.3E-15 96.5 9.5 103 70-176 12-159 (298)
22 PRK11244 phnP carbon-phosphoru 99.2 1.5E-10 3.3E-15 93.0 9.1 99 71-179 35-145 (250)
23 TIGR02108 PQQ_syn_pqqB coenzym 99.1 7.6E-11 1.6E-15 97.5 6.3 96 73-173 38-160 (302)
24 PRK00685 metal-dependent hydro 99.1 2E-10 4.2E-15 90.7 7.8 94 71-172 6-107 (228)
25 TIGR03307 PhnP phosphonate met 99.1 4.6E-10 9.9E-15 89.5 9.9 98 72-179 26-135 (238)
26 COG2333 ComEC Predicted hydrol 99.1 1.1E-09 2.3E-14 90.0 11.4 99 74-176 55-165 (293)
27 PRK02113 putative hydrolase; P 99.1 2.8E-10 6E-15 91.4 7.8 95 71-173 33-150 (252)
28 PF14597 Lactamase_B_5: Metall 99.1 2.1E-10 4.5E-15 87.0 6.5 99 70-180 20-123 (199)
29 PRK05184 pyrroloquinoline quin 99.0 2.4E-10 5.2E-15 94.5 5.4 99 71-173 37-161 (302)
30 PRK00055 ribonuclease Z; Revie 99.0 1.3E-09 2.8E-14 87.8 8.9 66 72-145 19-93 (270)
31 TIGR02651 RNase_Z ribonuclease 99.0 4.2E-09 9.1E-14 86.5 10.5 97 71-176 16-138 (299)
32 TIGR02649 true_RNase_BN ribonu 99.0 4.5E-09 9.7E-14 86.8 10.6 102 70-176 14-140 (303)
33 COG1236 YSH1 Predicted exonucl 98.9 1.7E-09 3.7E-14 93.4 6.6 105 70-180 11-147 (427)
34 COG1782 Predicted metal-depend 98.9 1.9E-09 4.1E-14 92.8 5.3 107 70-181 191-335 (637)
35 PF12706 Lactamase_B_2: Beta-l 98.8 2.4E-09 5.1E-14 82.0 1.6 89 88-178 2-115 (194)
36 COG2015 Alkyl sulfatase and re 98.6 2.9E-07 6.2E-12 79.2 8.2 108 63-175 117-282 (655)
37 COG1235 PhnP Metal-dependent h 98.4 2.8E-07 6.1E-12 75.0 5.2 54 87-144 41-94 (269)
38 KOG1135 mRNA cleavage and poly 98.4 2.2E-06 4.8E-11 76.3 9.7 106 69-179 11-154 (764)
39 PRK11709 putative L-ascorbate 98.4 1.8E-06 3.9E-11 73.0 8.0 62 111-172 109-182 (355)
40 KOG1136 Predicted cleavage and 98.3 9.7E-07 2.1E-11 73.1 5.8 72 70-145 14-95 (501)
41 COG1234 ElaC Metal-dependent h 98.3 7.7E-07 1.7E-11 73.4 5.0 66 72-145 19-93 (292)
42 PF13483 Lactamase_B_3: Beta-l 98.2 1.3E-06 2.7E-11 65.7 4.1 48 71-127 5-52 (163)
43 COG2220 Predicted Zn-dependent 98.2 7.3E-06 1.6E-10 66.1 7.8 104 58-170 4-121 (258)
44 TIGR02650 RNase_Z_T_toga ribon 97.9 1.4E-05 3.1E-10 65.2 4.5 55 87-145 19-81 (277)
45 KOG1137 mRNA cleavage and poly 97.7 5.1E-05 1.1E-09 66.4 4.2 79 60-144 13-99 (668)
46 KOG4736 Uncharacterized conser 97.6 6.1E-05 1.3E-09 61.3 3.6 92 74-181 96-193 (302)
47 COG2248 Predicted hydrolase (m 97.6 0.00047 1E-08 55.3 8.0 101 73-177 15-159 (304)
48 KOG2121 Predicted metal-depend 96.9 0.00061 1.3E-08 61.6 2.4 60 73-135 461-525 (746)
49 PF02112 PDEase_II: cAMP phosp 95.9 0.013 2.9E-07 49.2 4.8 56 71-129 15-97 (335)
50 KOG1361 Predicted hydrolase in 94.8 0.026 5.6E-07 49.4 3.0 66 111-180 112-187 (481)
51 PF13691 Lactamase_B_4: tRNase 94.3 0.1 2.2E-06 33.1 4.2 38 86-127 21-63 (63)
52 PF14234 DUF4336: Domain of un 91.4 1.5 3.2E-05 36.2 8.2 70 72-145 19-91 (285)
53 KOG3592 Microtubule-associated 90.9 0.31 6.7E-06 44.7 4.0 62 66-133 42-103 (934)
54 COG5212 PDE1 Low-affinity cAMP 85.1 0.31 6.7E-06 39.9 0.3 18 111-128 112-129 (356)
55 PF14572 Pribosyl_synth: Phosp 60.6 29 0.00063 26.8 5.6 52 90-144 92-143 (184)
56 PRK02269 ribose-phosphate pyro 59.4 20 0.00044 30.0 4.9 52 90-144 226-277 (320)
57 PRK00129 upp uracil phosphorib 57.8 21 0.00045 27.9 4.4 58 85-146 124-185 (209)
58 TIGR01091 upp uracil phosphori 57.0 19 0.00041 28.1 4.1 58 85-146 122-183 (207)
59 COG0462 PrsA Phosphoribosylpyr 56.3 27 0.00058 29.3 5.0 56 85-143 214-273 (314)
60 PRK04923 ribose-phosphate pyro 55.9 22 0.00047 29.8 4.5 38 85-123 217-258 (319)
61 KOG1145 Mitochondrial translat 54.8 12 0.00027 33.9 2.9 50 119-177 159-213 (683)
62 PLN02297 ribose-phosphate pyro 52.3 14 0.00031 31.1 2.9 38 85-123 230-271 (326)
63 PRK07199 phosphoribosylpyropho 49.5 15 0.00032 30.5 2.5 36 85-121 211-250 (301)
64 PF14681 UPRTase: Uracil phosp 49.4 17 0.00036 28.4 2.7 56 85-146 121-184 (207)
65 PRK00553 ribose-phosphate pyro 44.4 21 0.00046 30.0 2.8 38 85-123 218-259 (332)
66 PF06415 iPGM_N: BPG-independe 44.2 9.8 0.00021 30.3 0.7 26 118-144 41-67 (223)
67 PLN02541 uracil phosphoribosyl 41.7 36 0.00078 27.5 3.5 55 86-146 158-220 (244)
68 KOG1137 mRNA cleavage and poly 38.5 71 0.0015 29.1 5.1 78 60-143 150-245 (668)
69 PRK02458 ribose-phosphate pyro 37.7 34 0.00075 28.7 3.0 57 85-144 218-278 (323)
70 PRK03092 ribose-phosphate pyro 35.5 70 0.0015 26.6 4.4 49 85-134 201-252 (304)
71 PLN02335 anthranilate synthase 34.7 64 0.0014 25.3 4.0 29 84-112 17-45 (222)
72 cd07405 MPP_UshA_N Escherichia 34.6 2.5E+02 0.0054 22.8 7.8 81 87-171 43-135 (285)
73 PTZ00145 phosphoribosylpyropho 33.8 72 0.0016 28.1 4.4 38 85-123 335-376 (439)
74 cd02791 MopB_CT_Nitrate-R-NapA 32.8 83 0.0018 21.6 4.0 42 119-162 15-57 (122)
75 KOG3798 Predicted Zn-dependent 32.6 1E+02 0.0022 25.4 4.8 17 111-127 132-148 (343)
76 PF12000 Glyco_trans_4_3: Gkyc 31.4 1.2E+02 0.0026 23.1 4.8 39 101-143 56-94 (171)
77 PRK01259 ribose-phosphate pyro 31.1 67 0.0015 26.7 3.7 57 85-143 208-267 (309)
78 cd01748 GATase1_IGP_Synthase T 28.5 76 0.0016 24.1 3.4 22 89-110 2-23 (198)
79 PRK00934 ribose-phosphate pyro 28.0 53 0.0011 26.9 2.5 57 85-143 204-263 (285)
80 cd00508 MopB_CT_Fdh-Nap-like T 27.7 1.2E+02 0.0025 20.6 4.0 35 126-162 23-57 (120)
81 PF00478 IMPDH: IMP dehydrogen 27.6 1.1E+02 0.0025 26.0 4.5 46 99-144 110-156 (352)
82 PF07521 RMMBL: RNA-metabolisi 27.1 59 0.0013 18.5 1.9 25 97-123 19-43 (43)
83 TIGR01303 IMP_DH_rel_1 IMP deh 26.4 1.2E+02 0.0026 27.0 4.6 47 98-144 226-273 (475)
84 PRK05670 anthranilate synthase 26.2 1E+02 0.0022 23.3 3.7 24 88-111 2-25 (189)
85 TIGR03446 mycothiol_Mca mycoth 25.7 58 0.0013 26.8 2.4 31 99-132 111-147 (283)
86 PF09269 DUF1967: Domain of un 25.7 72 0.0016 20.2 2.4 15 154-168 54-68 (69)
87 COG1678 Putative transcription 25.4 24 0.00052 27.4 0.1 37 70-112 148-184 (194)
88 KOG1533 Predicted GTPase [Gene 25.3 1.2E+02 0.0026 24.8 4.0 37 85-121 96-140 (290)
89 PLN02369 ribose-phosphate pyro 24.7 76 0.0017 26.3 2.9 57 85-143 202-261 (302)
90 PF00117 GATase: Glutamine ami 24.0 80 0.0017 23.6 2.8 28 89-116 1-28 (192)
91 COG1107 Archaea-specific RecJ- 23.8 75 0.0016 29.2 2.8 37 88-126 421-458 (715)
92 PRK13146 hisH imidazole glycer 23.8 1.5E+02 0.0031 23.0 4.2 24 87-110 3-26 (209)
93 PRK07807 inosine 5-monophospha 22.7 1.4E+02 0.0031 26.5 4.4 46 99-144 229-275 (479)
94 cd02792 MopB_CT_Formate-Dh-Na- 22.5 1.7E+02 0.0037 20.0 4.0 34 127-162 24-57 (122)
95 TIGR00888 guaA_Nterm GMP synth 22.3 99 0.0021 23.3 3.0 22 89-110 2-23 (188)
96 COG0052 RpsB Ribosomal protein 22.1 1.5E+02 0.0032 24.1 3.9 38 86-125 158-195 (252)
97 TIGR03595 Obg_CgtA_exten Obg f 22.0 86 0.0019 19.9 2.2 16 153-168 53-68 (69)
98 PLN02538 2,3-bisphosphoglycera 22.0 49 0.0011 30.0 1.4 26 118-144 140-166 (558)
99 PRK09875 putative hydrolase; P 22.0 1.5E+02 0.0031 24.6 4.0 46 86-133 152-198 (292)
100 TIGR01307 pgm_bpd_ind 2,3-bisp 21.9 49 0.0011 29.6 1.3 26 118-144 119-145 (501)
101 PRK06827 phosphoribosylpyropho 21.9 1.2E+02 0.0027 26.1 3.7 49 85-135 264-315 (382)
102 PRK05096 guanosine 5'-monophos 21.8 1.6E+02 0.0034 25.2 4.2 58 87-144 97-158 (346)
103 PF02126 PTE: Phosphotriestera 21.6 1.3E+02 0.0029 25.0 3.8 47 86-134 155-203 (308)
104 TIGR01251 ribP_PPkin ribose-ph 21.6 1.3E+02 0.0028 24.9 3.7 57 85-143 210-269 (308)
105 COG0035 Upp Uracil phosphoribo 21.3 2.3E+02 0.005 22.4 4.8 56 85-146 124-186 (210)
106 PF08459 UvrC_HhH_N: UvrC Heli 21.0 54 0.0012 24.5 1.2 6 112-117 80-85 (155)
107 COG0532 InfB Translation initi 20.7 88 0.0019 28.1 2.6 13 164-176 54-66 (509)
108 PRK05434 phosphoglyceromutase; 20.6 55 0.0012 29.4 1.3 26 118-144 123-149 (507)
No 1
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.95 E-value=1.8e-27 Score=191.44 Aligned_cols=127 Identities=81% Similarity=1.152 Sum_probs=110.2
Q ss_pred ccCCCceEEEEEeeCCCccEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHh
Q 030144 55 SSSSSKLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSK 134 (182)
Q Consensus 55 ~~~~~~~~i~~~~~~~~~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~ 134 (182)
++..++|.|+++.....++||||+.++...+++++|||||....+.+++.+++.+++|++|++||.|+||++|+..|+++
T Consensus 5 ~~~~~~m~~~~~~~~~~~~~~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~ 84 (251)
T PLN02962 5 SSSSSKLLFRQLFEKESSTYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTK 84 (251)
T ss_pred CCCCCceEEEEeecCCceeEEEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHH
Confidence 34456799999999999999999987410146899999996557888999999999999999999999999999999998
Q ss_pred CCCCEEEecCCCCCCCceEcCCCCEEEeCCeEEEEEEcCCCCCCCCC
Q 030144 135 VPGVKSIISKASGSKADLHVEHGDKVSFGDLFLEVCIVGGFQAALSK 181 (182)
Q Consensus 135 ~p~~~v~~~~~~~~~~~~~~~~g~~~~~g~~~l~vi~tPGHT~g~~~ 181 (182)
++++++++++......+..+++|+++.+|+..+++++|||||+||++
T Consensus 85 ~~~a~v~~~~~~~~~~d~~l~~g~~i~~g~~~l~vi~tPGHT~g~v~ 131 (251)
T PLN02962 85 LPGVKSIISKASGSKADLFVEPGDKIYFGDLYLEVRATPGHTAGCVT 131 (251)
T ss_pred CCCCeEEeccccCCCCCEEeCCCCEEEECCEEEEEEECCCCCcCcEE
Confidence 88999999877655566778999999999999999999999999974
No 2
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.92 E-value=1.1e-24 Score=176.22 Aligned_cols=108 Identities=31% Similarity=0.432 Sum_probs=93.7
Q ss_pred CCccEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHhCCCCEEEecCCCC-C
Q 030144 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG-S 148 (182)
Q Consensus 70 ~~~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~~~~-~ 148 (182)
..+|++|||.++. ++++++||||. .+.+++.+++.+++|++|++||.|+||+||+..|++.+++++||+++.+. .
T Consensus 9 ~~dNy~Yli~d~~--~~~~vlIDp~~--~~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~~~~V~~~~~~~~~ 84 (258)
T PLN02469 9 LEDNYAYLIIDES--TKDAAVVDPVD--PEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVPGIKVYGGSLDNVK 84 (258)
T ss_pred ccceEEEEEEeCC--CCeEEEECCCC--hHHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCCCCEEEEechhcCC
Confidence 4566799998753 46899999994 68899999999999999999999999999999999999889999987643 3
Q ss_pred CCceEcCCCCEEEeCC-eEEEEEEcCCCCCCCCC
Q 030144 149 KADLHVEHGDKVSFGD-LFLEVCIVGGFQAALSK 181 (182)
Q Consensus 149 ~~~~~~~~g~~~~~g~-~~l~vi~tPGHT~g~~~ 181 (182)
.....+++|+++.+|+ ..+++++|||||+||++
T Consensus 85 ~~~~~v~~gd~i~lg~~~~~~vi~tPGHT~ghi~ 118 (258)
T PLN02469 85 GCTHPVENGDKLSLGKDVNILALHTPCHTKGHIS 118 (258)
T ss_pred CCCeEeCCCCEEEECCceEEEEEECCCCCCCCEE
Confidence 3467789999999996 68999999999999974
No 3
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.92 E-value=5.2e-24 Score=176.84 Aligned_cols=120 Identities=26% Similarity=0.319 Sum_probs=101.8
Q ss_pred cCCC-ceEEEEEeeCCCccEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHh
Q 030144 56 SSSS-KLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSK 134 (182)
Q Consensus 56 ~~~~-~~~i~~~~~~~~~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~ 134 (182)
++++ .|++..+.. ..+||+|+|.++. ++++++||||. .+.+++++++.+++|++|++||.|+||+||+.+|+++
T Consensus 70 ~~~~~~~~i~~ip~-l~dNy~Yli~d~~--t~~~~vVDP~~--a~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~ 144 (329)
T PLN02398 70 SNVSSSLQIELVPC-LKDNYAYLLHDED--TGTVGVVDPSE--AVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKAR 144 (329)
T ss_pred cCCCCCcEEEEEee-eCceEEEEEEECC--CCEEEEEcCCC--HHHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHh
Confidence 3443 577766654 6788999998753 56899999995 6889999999999999999999999999999999999
Q ss_pred CCCCEEEecCCCC---CCCceEcCCCCEEEeCCeEEEEEEcCCCCCCCCC
Q 030144 135 VPGVKSIISKASG---SKADLHVEHGDKVSFGDLFLEVCIVGGFQAALSK 181 (182)
Q Consensus 135 ~p~~~v~~~~~~~---~~~~~~~~~g~~~~~g~~~l~vi~tPGHT~g~~~ 181 (182)
+ +++||+++.+. ...+..+++|+++.+|+.++++++|||||+||++
T Consensus 145 ~-ga~V~g~~~~~~~i~~~d~~v~dGd~i~lgg~~l~vi~tPGHT~GhI~ 193 (329)
T PLN02398 145 Y-GAKVIGSAVDKDRIPGIDIVLKDGDKWMFAGHEVLVMETPGHTRGHIS 193 (329)
T ss_pred c-CCEEEEehHHhhhccCCcEEeCCCCEEEECCeEEEEEeCCCcCCCCEE
Confidence 8 89999987632 3356788999999999999999999999999974
No 4
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.91 E-value=2.6e-23 Score=167.56 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=94.1
Q ss_pred CCccEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHhCCCCEEEecCCCCC-
Q 030144 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGS- 148 (182)
Q Consensus 70 ~~~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~~~~~- 148 (182)
..+|++|++.++ ++++++||||. .+.+++.+++.++++++|++||.|+||+||+..|++++++++||++.....
T Consensus 9 ~~dNy~~li~~~---~~~~ilIDpg~--~~~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~~~~~V~~~~~~~~~ 83 (251)
T PRK10241 9 FDDNYIWVLNDE---AGRCLIVDPGE--AEPVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQDK 83 (251)
T ss_pred ecceEEEEEEcC---CCcEEEECCCC--hHHHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHCCCCEEEeccccccc
Confidence 567899999875 56899999996 578899999999999999999999999999999999998899999865432
Q ss_pred CCceEcCCCCEEEeCCeEEEEEEcCCCCCCCCC
Q 030144 149 KADLHVEHGDKVSFGDLFLEVCIVGGFQAALSK 181 (182)
Q Consensus 149 ~~~~~~~~g~~~~~g~~~l~vi~tPGHT~g~~~ 181 (182)
.....+++|+++.+|+..+++++|||||+||++
T Consensus 84 ~~~~~v~~g~~i~ig~~~~~vi~tPGHT~ghi~ 116 (251)
T PRK10241 84 GTTQVVKDGETAFVLGHEFSVFATPGHTLGHIC 116 (251)
T ss_pred CCceEeCCCCEEEeCCcEEEEEEcCCCCcccee
Confidence 345678899999999999999999999999985
No 5
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.89 E-value=2.2e-22 Score=161.91 Aligned_cols=106 Identities=28% Similarity=0.372 Sum_probs=93.0
Q ss_pred CCccEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHhCCCCEEEecCCCC-C
Q 030144 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG-S 148 (182)
Q Consensus 70 ~~~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~~~~-~ 148 (182)
..+||+|+|.++ +++++|||||. ...+.+.+++.++++++|++||.|+||+||+..|++.+ +++||+++.+. .
T Consensus 7 ~~dN~~yli~~~---~~~~ilID~g~--~~~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~-~~~V~~~~~~~~~ 80 (248)
T TIGR03413 7 LSDNYIWLLHDP---DGQAAVVDPGE--AEPVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAF-PAPVYGPAEERIP 80 (248)
T ss_pred cccEEEEEEEcC---CCCEEEEcCCC--hHHHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHC-CCeEEecccccCC
Confidence 578999999885 35899999995 57788999999999999999999999999999999998 59999987652 2
Q ss_pred CCceEcCCCCEEEeCCeEEEEEEcCCCCCCCCC
Q 030144 149 KADLHVEHGDKVSFGDLFLEVCIVGGFQAALSK 181 (182)
Q Consensus 149 ~~~~~~~~g~~~~~g~~~l~vi~tPGHT~g~~~ 181 (182)
.....+++|+++.+|+..++++++||||+||++
T Consensus 81 ~~~~~v~~g~~~~~g~~~i~v~~tpGHT~g~i~ 113 (248)
T TIGR03413 81 GITHPVKDGDTVTLGGLEFEVLAVPGHTLGHIA 113 (248)
T ss_pred CCcEEeCCCCEEEECCEEEEEEECCCCCcccEE
Confidence 345778999999999999999999999999974
No 6
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=99.86 E-value=1.2e-21 Score=156.62 Aligned_cols=110 Identities=25% Similarity=0.328 Sum_probs=91.8
Q ss_pred eCCCccEEEEEEe-cCCCCCceEEEcCCCCChHHHHHHHHH---cCCcccEEEcCCCChhhcCChHHHHHhCC-CCEEEe
Q 030144 68 EKESSTYTYLLAD-VNHPDKPALLIDPVDKTVDRDLNVIKE---LGLKLVYAMNTHVHADHVTGTGLIKSKVP-GVKSII 142 (182)
Q Consensus 68 ~~~~~~n~yli~~-~~~~~~~~ilID~G~~~~~~l~~~l~~---~~~~i~~IilTH~H~DH~ggl~~l~~~~p-~~~v~~ 142 (182)
....+||+||+.+ +. ...+.++||+. .+.+...+++ .+.++.+|+.||.|+||+||+..|.+.++ ++++|.
T Consensus 8 ~~~~~Ny~YLl~~~~~--~~~a~~vDP~~--pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g 83 (265)
T KOG0813|consen 8 PTLQDNYMYLLGDGDK--TIDADLVDPAE--PEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIG 83 (265)
T ss_pred cccCCceEEEEecccc--eeeeeeecCcc--hHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcEEec
Confidence 3468999999988 32 55677788775 5666666665 67889999999999999999999999854 899998
Q ss_pred cC-CCCCCCceEcCCCCEEEeCCeEEEEEEcCCCCCCCCC
Q 030144 143 SK-ASGSKADLHVEHGDKVSFGDLFLEVCIVGGFQAALSK 181 (182)
Q Consensus 143 ~~-~~~~~~~~~~~~g~~~~~g~~~l~vi~tPGHT~g~~~ 181 (182)
+. .........+++|+++.++|.++++++|||||.||++
T Consensus 84 ~~~~r~~~i~~~~~~~e~~~~~g~~v~~l~TPgHT~~hi~ 123 (265)
T KOG0813|consen 84 GADDRIPGITRGLKDGETVTVGGLEVRCLHTPGHTAGHIC 123 (265)
T ss_pred CChhcCccccccCCCCcEEEECCEEEEEEeCCCccCCcEE
Confidence 84 4455667779999999999999999999999999985
No 7
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=99.83 E-value=3.2e-21 Score=144.56 Aligned_cols=118 Identities=58% Similarity=0.881 Sum_probs=108.5
Q ss_pred eEEEEEeeCCCccEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHhCCCCEE
Q 030144 61 LLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKS 140 (182)
Q Consensus 61 ~~i~~~~~~~~~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~p~~~v 140 (182)
+.++|++.....+++||+.+.. ++++++|||-.....+-.+.+++.|+++.+-+.||.|.||+.|...|+..+|+|+-
T Consensus 9 ~~frqlfe~~SsTytYll~d~~--~~~AviIDPV~et~~RD~qlikdLgl~LiYa~NTH~HADHiTGtg~Lkt~~pg~kS 86 (237)
T KOG0814|consen 9 PIFRQLFEFESSTYTYLLGDHK--TGKAVIIDPVLETVSRDAQLIKDLGLDLIYALNTHVHADHITGTGLLKTLLPGCKS 86 (237)
T ss_pred HHHHHHhccccceEEEEeeeCC--CCceEEecchhhcccchHHHHHhcCceeeeeecceeecccccccchHHHhcccHHH
Confidence 4578888889999999998864 78999999997666777889999999999999999999999999999999999999
Q ss_pred EecCCCCCCCceEcCCCCEEEeCCeEEEEEEcCCCCCCCC
Q 030144 141 IISKASGSKADLHVEHGDKVSFGDLFLEVCIVGGFQAALS 180 (182)
Q Consensus 141 ~~~~~~~~~~~~~~~~g~~~~~g~~~l~vi~tPGHT~g~~ 180 (182)
+++...+...+..+++|+.+++|+..+++..|||||+|++
T Consensus 87 Vis~~SGakAD~~l~~Gd~i~~G~~~le~ratPGHT~GC~ 126 (237)
T KOG0814|consen 87 VISSASGAKADLHLEDGDIIEIGGLKLEVRATPGHTNGCV 126 (237)
T ss_pred HhhhccccccccccCCCCEEEEccEEEEEecCCCCCCceE
Confidence 9998888888999999999999999999999999999986
No 8
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.78 E-value=1.7e-18 Score=147.73 Aligned_cols=109 Identities=21% Similarity=0.219 Sum_probs=88.7
Q ss_pred eCCCccEEEEEEecCCCCCceEEEcCCCC-ChHHHHHHHHHc-CC-cccEEEcCCCChhhcCChHHHHHhCCCCEEEecC
Q 030144 68 EKESSTYTYLLADVNHPDKPALLIDPVDK-TVDRDLNVIKEL-GL-KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISK 144 (182)
Q Consensus 68 ~~~~~~n~yli~~~~~~~~~~ilID~G~~-~~~~l~~~l~~~-~~-~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~ 144 (182)
..+...|+|||.+ ++.+|||||.. ..+.+++.+++. +. +|++|++||.|+||+||+..|.+.+|++++|+++
T Consensus 28 ~~g~~~NsyLI~~-----~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~p~a~V~~~~ 102 (394)
T PRK11921 28 HRGSSYNSYLIKD-----EKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEIPDTPIYCTK 102 (394)
T ss_pred CCceEEEEEEEeC-----CCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHCCCCEEEECH
Confidence 3467889999975 46899999953 356677777654 33 6999999999999999999999999899999987
Q ss_pred CCC--------C-CCceEcCCCCEEEeCCeEEEEEEcCC-CCCCCCC
Q 030144 145 ASG--------S-KADLHVEHGDKVSFGDLFLEVCIVGG-FQAALSK 181 (182)
Q Consensus 145 ~~~--------~-~~~~~~~~g~~~~~g~~~l~vi~tPG-HT~g~~~ 181 (182)
... . .....+++|+++++|+.++++++||| |||||+.
T Consensus 103 ~~~~~l~~~~~~~~~~~~v~~g~~l~lG~~~l~~i~tP~~H~p~~~~ 149 (394)
T PRK11921 103 NGAKSLKGHYHQDWNFVVVKTGDRLEIGSNELIFIEAPMLHWPDSMF 149 (394)
T ss_pred HHHHHHHHHhCCCCceEEeCCCCEEeeCCeEEEEEeCCCCCCCCceE
Confidence 531 1 12356789999999999999999998 9999973
No 9
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.75 E-value=1.7e-17 Score=130.92 Aligned_cols=109 Identities=28% Similarity=0.336 Sum_probs=83.7
Q ss_pred CCccEEEEEEecCCCCCceEEEcCCCCC--hHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHhCCCCEEEecCCC-
Q 030144 70 ESSTYTYLLADVNHPDKPALLIDPVDKT--VDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS- 146 (182)
Q Consensus 70 ~~~~n~yli~~~~~~~~~~ilID~G~~~--~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~~~- 146 (182)
...+++|++..+ .++.+|||+|... ...+.+.+.+.+.+|++|++||.|+||+||+..+.+.++.++++..+..
T Consensus 22 ~~~~~~~~~~~~---~~~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~~~~~~~~~~~~ 98 (252)
T COG0491 22 LSGNSVYLLVDG---EGGAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFGAAPVIAPAEVP 98 (252)
T ss_pred cccccEEEEEcC---CCceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcCCceEEccchhh
Confidence 445566666653 2379999999754 4778888888888999999999999999999999988733777443321
Q ss_pred ----------------C-----CCCceEcCCCCEEEeCCeEEEEEEcCCCCCCCCC
Q 030144 147 ----------------G-----SKADLHVEHGDKVSFGDLFLEVCIVGGFQAALSK 181 (182)
Q Consensus 147 ----------------~-----~~~~~~~~~g~~~~~g~~~l~vi~tPGHT~g~~~ 181 (182)
. ......+.+++.+.+++..+++++|||||+||++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tpGHT~g~~~ 154 (252)
T COG0491 99 LLLREEILRKAGVTAEAYAAPGASPLRALEDGDELDLGGLELEVLHTPGHTPGHIV 154 (252)
T ss_pred hhhhcccccccccccccCCCCccccceecCCCCEEEecCeEEEEEECCCCCCCeEE
Confidence 0 0112345589999999999999999999999975
No 10
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.73 E-value=3e-17 Score=143.14 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=87.2
Q ss_pred eCCCccEEEEEEecCCCCCceEEEcCCCC-ChHHHHHHHHHc-C-CcccEEEcCCCChhhcCChHHHHHhCCCCEEEecC
Q 030144 68 EKESSTYTYLLADVNHPDKPALLIDPVDK-TVDRDLNVIKEL-G-LKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISK 144 (182)
Q Consensus 68 ~~~~~~n~yli~~~~~~~~~~ilID~G~~-~~~~l~~~l~~~-~-~~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~ 144 (182)
..+...|+|||.+ ++.+|||||.. ...++++.+++. + .+|++|++||.|.||+||++.|.+.+|+++||+++
T Consensus 30 ~~G~t~NsYLI~~-----~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~p~a~V~~s~ 104 (479)
T PRK05452 30 LRGSSYNSYLIRE-----EKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYCTA 104 (479)
T ss_pred CCCcEEEEEEEEC-----CCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHCCCCEEEECH
Confidence 3467889999985 47899999953 355667776643 3 36999999999999999999999988899999986
Q ss_pred CCC---------CC-CceEcCCCCEEEeC-CeEEEEEEcCC-CCCCCCC
Q 030144 145 ASG---------SK-ADLHVEHGDKVSFG-DLFLEVCIVGG-FQAALSK 181 (182)
Q Consensus 145 ~~~---------~~-~~~~~~~g~~~~~g-~~~l~vi~tPG-HT~g~~~ 181 (182)
... .. ....+++|+++.+| +.++++++||| |||||+.
T Consensus 105 ~~~~~l~~~~~~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~ 153 (479)
T PRK05452 105 NAIDSINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMM 153 (479)
T ss_pred HHHHHHHHhhcCCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceE
Confidence 531 11 23567899999999 47999999997 9999974
No 11
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.71 E-value=1.6e-16 Score=120.05 Aligned_cols=106 Identities=25% Similarity=0.342 Sum_probs=84.8
Q ss_pred CCccEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHcCC-cccEEEcCCCChhhcCChHHHHHhCCCCEEEecCCCC-
Q 030144 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL-KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG- 147 (182)
Q Consensus 70 ~~~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~-~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~~~~- 147 (182)
....|||+|.. +++.+|||||......+.+.+++.+. ++++|++||.|.||++|+..+.+.. ++++|+++...
T Consensus 3 ~~~~~~~li~~----~~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~~-~~~i~~~~~~~~ 77 (183)
T smart00849 3 GVGVNSYLVEG----DGGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEAP-GAPVYAPEGTAE 77 (183)
T ss_pred ccceeEEEEEe----CCceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhCC-CCcEEEchhhhH
Confidence 35688999988 47899999995444455555766654 7999999999999999999998874 89999876531
Q ss_pred ------------------CCCceEcCCCCEEEeCCeEEEEEEcCCCCCCCC
Q 030144 148 ------------------SKADLHVEHGDKVSFGDLFLEVCIVGGFQAALS 180 (182)
Q Consensus 148 ------------------~~~~~~~~~g~~~~~g~~~l~vi~tPGHT~g~~ 180 (182)
......+++++++.+++.+++++++|||++|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 128 (183)
T smart00849 78 LLKDLLKLGGALGAEAPPPPPDRTLKDGEELDLGGLELEVIHTPGHTPGSI 128 (183)
T ss_pred HHhccchhccccCcCCCCCccceecCCCCEEEeCCceEEEEECCCCCCCcE
Confidence 011245788999999999999999999999975
No 12
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.59 E-value=1e-14 Score=125.51 Aligned_cols=107 Identities=15% Similarity=0.091 Sum_probs=82.9
Q ss_pred CCccEEEEEEecCCCCCceEEEcCCCCChH-HH---------HHHHHHcCCcccEEEcCCCChhhcCChHHHHHhCCCCE
Q 030144 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVD-RD---------LNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVK 139 (182)
Q Consensus 70 ~~~~n~yli~~~~~~~~~~ilID~G~~~~~-~l---------~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~p~~~ 139 (182)
..+.|||++.. ++..+|||||..... .+ .+++++...++++|++||.|.||++|++.|.+.++.++
T Consensus 11 eiG~n~~ll~~----~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~~~~~~ 86 (422)
T TIGR00649 11 EIGKNMYVVEI----DDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHTVGFPP 86 (422)
T ss_pred ccCCeEEEEEE----CCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHhCCCCe
Confidence 35899999987 478999999964211 11 35566666689999999999999999999998874478
Q ss_pred EEecCCCC--------------CCCceEcCCCCEEEeC-CeEEEEEEcCCCCCCCC
Q 030144 140 SIISKASG--------------SKADLHVEHGDKVSFG-DLFLEVCIVGGFQAALS 180 (182)
Q Consensus 140 v~~~~~~~--------------~~~~~~~~~g~~~~~g-~~~l~vi~tPGHT~g~~ 180 (182)
||+++.+. ......++.++.+++| +.+++++.+++|+||++
T Consensus 87 Vy~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~ 142 (422)
T TIGR00649 87 IYGTPLTIALIKSKIKENKLNVRTDLLEIHEGEPIETGENHTIEFIRITHSIPDSV 142 (422)
T ss_pred EEeCHHHHHHHHHHHHhcCCCCCCceEEeCCCCEEEeCCceEEEEEECCCCCcceE
Confidence 99986531 1123467889999997 59999999999999874
No 13
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.53 E-value=1.1e-13 Score=116.42 Aligned_cols=108 Identities=21% Similarity=0.246 Sum_probs=89.9
Q ss_pred eCCCccEEEEEEecCCCCCceEEEcCCC-CChHHHHHHHHHc-C-CcccEEEcCCCChhhcCChHHHHHhCCCCEEEecC
Q 030144 68 EKESSTYTYLLADVNHPDKPALLIDPVD-KTVDRDLNVIKEL-G-LKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISK 144 (182)
Q Consensus 68 ~~~~~~n~yli~~~~~~~~~~ilID~G~-~~~~~l~~~l~~~-~-~~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~ 144 (182)
..+.+.|+|||.+ ++.+||||+. ...+++++.+++. + .+||+|+++|..+||+|+++.|.+.+|++++++++
T Consensus 31 ~~GttyNSYLI~~-----~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p~a~ii~s~ 105 (388)
T COG0426 31 PRGTTYNSYLIVG-----DKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAPNAKIICSK 105 (388)
T ss_pred CCCceeeeEEEeC-----CcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhCCCCEEEeeH
Confidence 3578899999995 6899999985 3466677777665 2 25999999999999999999999999999999997
Q ss_pred CCC---------CCCceEcCCCCEEEeCCeEEEEEEcC-CCCCCCC
Q 030144 145 ASG---------SKADLHVEHGDKVSFGDLFLEVCIVG-GFQAALS 180 (182)
Q Consensus 145 ~~~---------~~~~~~~~~g~~~~~g~~~l~vi~tP-GHT~g~~ 180 (182)
... ......++.|+++++||.+++++.+| =|.||++
T Consensus 106 ~~~~~L~~~~~~~~~~~ivk~Gd~ldlGg~tL~Fi~ap~LHWPd~m 151 (388)
T COG0426 106 LAARFLKGFYHDPEWFKIVKTGDTLDLGGHTLKFIPAPFLHWPDTM 151 (388)
T ss_pred HHHHHHHHhcCCccceeecCCCCEeccCCcEEEEEeCCCCCCCCce
Confidence 521 11146789999999999999999998 6999986
No 14
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.49 E-value=5.6e-14 Score=105.81 Aligned_cols=107 Identities=21% Similarity=0.164 Sum_probs=73.4
Q ss_pred CCccEEEEEEecCCCCCceEEEcCCCCChHHHH---HHHHHcCCcccEEEcCCCChhhcCChHHHHHhCCCCEEEecCCC
Q 030144 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRDL---NVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS 146 (182)
Q Consensus 70 ~~~~n~yli~~~~~~~~~~ilID~G~~~~~~l~---~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~~~ 146 (182)
...+|||+|.. +++.+|||||........ ......+.+|++||+||.|+||+||+..|.++++...++.....
T Consensus 3 ~~~~n~~li~~----~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~~~~~~~~~~~ 78 (194)
T PF00753_consen 3 EGGSNSYLIEG----GDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAGPVVIIYSSADA 78 (194)
T ss_dssp SEEEEEEEEEE----TTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTTEEEEEEHHHH
T ss_pred CeeEEEEEEEE----CCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccccceeeeeccccc
Confidence 46789999987 589999999975322222 22333455899999999999999999999999843333333221
Q ss_pred C------------------CC-CceEcCCCCEEEeCCeEEEEEEcCCCCCCCC
Q 030144 147 G------------------SK-ADLHVEHGDKVSFGDLFLEVCIVGGFQAALS 180 (182)
Q Consensus 147 ~------------------~~-~~~~~~~g~~~~~g~~~l~vi~tPGHT~g~~ 180 (182)
. .. .............++..+.+...+||+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (194)
T PF00753_consen 79 AKAIRPPDRDSASRRGPAVPPPPIIDEDEDDLEIGGDRILFIIPGPGHGSDSL 131 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHESEEEEEETTTEEEEETTEEEEEEESSSSSTTEE
T ss_pred cccccccccccccccccccccccceeeecccccccccccccceeccccCCcce
Confidence 0 00 1122344555566778888889999998864
No 15
>PRK11539 ComEC family competence protein; Provisional
Probab=99.36 E-value=1.8e-11 Score=112.29 Aligned_cols=109 Identities=14% Similarity=0.069 Sum_probs=84.7
Q ss_pred ceEEEEEeeCCCccEEEEEEecCCCCCceEEEcCCCC------ChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHH
Q 030144 60 KLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDK------TVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKS 133 (182)
Q Consensus 60 ~~~i~~~~~~~~~~n~yli~~~~~~~~~~ilID~G~~------~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~ 133 (182)
.+++..+ +.+.+. +.+|.. +++++|||||.. ..+.+..+++..|+++|++++||.|.||+||+..+.+
T Consensus 500 ~~~v~~l-DVGqG~-a~li~~----~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~ 573 (755)
T PRK11539 500 EWRVDML-DVGHGL-AVVIER----NGKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLH 573 (755)
T ss_pred cEEEEEE-EccCce-EEEEEE----CCEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHH
Confidence 3455433 444554 556666 578999999953 1356788999999999999999999999999999999
Q ss_pred hCCCCEEEecCCCCCCCceEcCCCCEEEeCCeEEEEEEcCCCC
Q 030144 134 KVPGVKSIISKASGSKADLHVEHGDKVSFGDLFLEVCIVGGFQ 176 (182)
Q Consensus 134 ~~p~~~v~~~~~~~~~~~~~~~~g~~~~~g~~~l~vi~tPGHT 176 (182)
.+|..+++.+.... .......|+.+++++.++++++.|+|+
T Consensus 574 ~~~~~~i~~~~~~~--~~~~~~~g~~~~~~~~~~~vL~P~~~~ 614 (755)
T PRK11539 574 AWPMAWIRSPLNWA--NHLPCVRGEQWQWQGLTFSVHWPLEQS 614 (755)
T ss_pred hCCcceeeccCccc--CcccccCCCeEeECCEEEEEEecCccc
Confidence 99888888764322 123457899999999999999988776
No 16
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.32 E-value=6.1e-12 Score=113.00 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=78.9
Q ss_pred eEEEEEee-CCCccEEEEEEecCCCCCceEEEcCCCCCh---HHHHHHHHHcC---CcccEEEcCCCChhhcCChHHHHH
Q 030144 61 LLFRQTFE-KESSTYTYLLADVNHPDKPALLIDPVDKTV---DRDLNVIKELG---LKLVYAMNTHVHADHVTGTGLIKS 133 (182)
Q Consensus 61 ~~i~~~~~-~~~~~n~yli~~~~~~~~~~ilID~G~~~~---~~l~~~l~~~~---~~i~~IilTH~H~DH~ggl~~l~~ 133 (182)
|++..+-. +..+.|||+|.. ++..+|||||.... ......+...+ .+|++||+||.|.||+|+++.|.+
T Consensus 175 m~i~~LGg~~eVG~Sc~Ll~~----~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k 250 (630)
T TIGR03675 175 VRVTALGGFREVGRSALLLST----PESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFK 250 (630)
T ss_pred EEEEEEecCCccCCCEEEEEE----CCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHH
Confidence 56554432 366789999987 46789999996421 11112222111 259999999999999999999987
Q ss_pred hCCCCEEEecCCC------------------C--C-----------CCceEcCCCCEEEeC-CeEEEEEEcCCCCCCCC
Q 030144 134 KVPGVKSIISKAS------------------G--S-----------KADLHVEHGDKVSFG-DLFLEVCIVGGFQAALS 180 (182)
Q Consensus 134 ~~p~~~v~~~~~~------------------~--~-----------~~~~~~~~g~~~~~g-~~~l~vi~tPGHT~g~~ 180 (182)
...+.+||+++.+ . . .....++.+++++++ +.+++++.+ ||++|+.
T Consensus 251 ~g~~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~A-GHilGsa 328 (630)
T TIGR03675 251 YGYDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNA-GHILGSA 328 (630)
T ss_pred hCCCCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecC-ccccCce
Confidence 5337899998642 0 0 012356678888884 788887765 9999985
No 17
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.28 E-value=4.4e-11 Score=108.42 Aligned_cols=106 Identities=17% Similarity=0.205 Sum_probs=81.1
Q ss_pred eEEEEEeeCCCccEEEEEEecCCCCCceEEEcCCCCC------hHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHh
Q 030144 61 LLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKT------VDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSK 134 (182)
Q Consensus 61 ~~i~~~~~~~~~~n~yli~~~~~~~~~~ilID~G~~~------~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~ 134 (182)
.++. +.+.+.+. +.+|.. +++.+|||+|... ...+..++++.|++||++++||.|.||+||+..+.+.
T Consensus 440 ~~v~-~lDVGqGd-aili~~----~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~ID~lilTH~d~DHiGGl~~ll~~ 513 (662)
T TIGR00361 440 WQVD-MLDVGQGL-AMFIGA----NGKGILYDTGEPWREGSLGEKVIIPFLTAKGIKLEALILSHADQDHIGGAEIILKH 513 (662)
T ss_pred EEEE-EEecCCce-EEEEEE----CCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCCcCEEEECCCchhhhCcHHHHHHh
Confidence 4453 34444444 666766 3589999999531 2458899999998999999999999999999999999
Q ss_pred CCCCEEEecCCCC--CCCceEcCCCCEEEeCCeEEEEEEc
Q 030144 135 VPGVKSIISKASG--SKADLHVEHGDKVSFGDLFLEVCIV 172 (182)
Q Consensus 135 ~p~~~v~~~~~~~--~~~~~~~~~g~~~~~g~~~l~vi~t 172 (182)
++..+++.++... ......++.|+.+++++.++++++-
T Consensus 514 ~~v~~i~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~vL~P 553 (662)
T TIGR00361 514 HPVKRLVIPKGFVEEGVAIEECKRGDVWQWQGLQFHVLSP 553 (662)
T ss_pred CCccEEEeccchhhCCCceEecCCCCEEeECCEEEEEECC
Confidence 9767888765421 1223567899999999999999973
No 18
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.24 E-value=5.1e-11 Score=105.08 Aligned_cols=117 Identities=18% Similarity=0.134 Sum_probs=87.2
Q ss_pred ceEEEEEee-CCCccEEEEEEecCCCCCceEEEcCCCCChH----------HHHHHHHHcCCcccEEEcCCCChhhcCCh
Q 030144 60 KLLFRQTFE-KESSTYTYLLADVNHPDKPALLIDPVDKTVD----------RDLNVIKELGLKLVYAMNTHVHADHVTGT 128 (182)
Q Consensus 60 ~~~i~~~~~-~~~~~n~yli~~~~~~~~~~ilID~G~~~~~----------~l~~~l~~~~~~i~~IilTH~H~DH~ggl 128 (182)
.+.|..+-. +..+.|+|++.- +++.+++|+|....+ .-..++++...++++||+||+|.||+||+
T Consensus 8 ~i~i~~lGG~~EiGkN~~vve~----~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGai 83 (555)
T COG0595 8 KIKIFALGGVGEIGKNMYVVEY----GDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGAL 83 (555)
T ss_pred ceEEEEecChhhhccceEEEEE----CCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccch
Confidence 345544432 366789999987 579999999953211 11456777766899999999999999999
Q ss_pred HHHHHhCCCCEEEecCCCC---------------CCCceEcCCCCEEEeCCeEEEEEEcCCCCCCCC
Q 030144 129 GLIKSKVPGVKSIISKASG---------------SKADLHVEHGDKVSFGDLFLEVCIVGGFQAALS 180 (182)
Q Consensus 129 ~~l~~~~p~~~v~~~~~~~---------------~~~~~~~~~g~~~~~g~~~l~vi~tPGHT~g~~ 180 (182)
+++..+...++||+++.+. ......++.++.++++++.++++.+-.=.||++
T Consensus 84 p~ll~~~~~~piy~s~lt~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSIPds~ 150 (555)
T COG0595 84 PYLLKQVLFAPIYASPLTAALIKEKLKEHGLFKNENELHEVKPGSEIKFGSFEVEFFPVTHSIPDSL 150 (555)
T ss_pred HHHHhcCCcCceecCHhhHHHHHHHHHHhccccccCceEEeCCCCeEEeCcEEEEEEeecccCccce
Confidence 9999988559999887531 123457889999999999999999755555543
No 19
>PRK02126 ribonuclease Z; Provisional
Probab=99.21 E-value=5e-11 Score=99.84 Aligned_cols=75 Identities=15% Similarity=0.106 Sum_probs=56.9
Q ss_pred EEEeeCCCccEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHhC----CCCE
Q 030144 64 RQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKV----PGVK 139 (182)
Q Consensus 64 ~~~~~~~~~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~----p~~~ 139 (182)
.++..+...+|||++..+. ++..+|||||. +.+.++..-.+|++|++||.|.||++|++.|.+.+ +.++
T Consensus 7 ~~~~~g~~~dn~~~l~~~~--~~~~iLiD~G~-----~~~l~~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~ 79 (334)
T PRK02126 7 PRLVNGPFDDPGLYVDFLF--ERRALLFDLGD-----LHHLPPRELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLR 79 (334)
T ss_pred eEEecCCCCCcEEEEEECC--CCeEEEEcCCC-----HHHHhhcCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeE
Confidence 3566677889999998743 57899999996 23333332357999999999999999999998764 3478
Q ss_pred EEecCC
Q 030144 140 SIISKA 145 (182)
Q Consensus 140 v~~~~~ 145 (182)
||+++.
T Consensus 80 iygp~~ 85 (334)
T PRK02126 80 LFGPPG 85 (334)
T ss_pred EEECHH
Confidence 888764
No 20
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.21 E-value=3.9e-11 Score=95.63 Aligned_cols=68 Identities=22% Similarity=0.335 Sum_probs=57.2
Q ss_pred cEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHcCC---cccEEEcCCCChhhcCChHHHHHhC-CCCEEEecCC
Q 030144 73 TYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSKV-PGVKSIISKA 145 (182)
Q Consensus 73 ~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~---~i~~IilTH~H~DH~ggl~~l~~~~-p~~~v~~~~~ 145 (182)
..++||.. .+..+|+|||.. ...++.-++..|+ ++|++++||.|+||+||+.++.+.. ++.++|+++.
T Consensus 22 GfS~LVE~----~~~riLFDtG~~-~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~ 93 (259)
T COG1237 22 GFSALVED----EGTRILFDTGTD-SDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPD 93 (259)
T ss_pred ceEEEEEc----CCeEEEEeCCCC-cHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChH
Confidence 34778877 468999999953 6778888888886 5999999999999999999997754 7899999875
No 21
>PRK04286 hypothetical protein; Provisional
Probab=99.19 E-value=1e-10 Score=96.52 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=64.3
Q ss_pred CCccEEEEEEecCCCCCceEEEcCCCCC-------------hHHHHHHHHHcC---CcccEEEcCCCChhhcCChHHHH-
Q 030144 70 ESSTYTYLLADVNHPDKPALLIDPVDKT-------------VDRDLNVIKELG---LKLVYAMNTHVHADHVTGTGLIK- 132 (182)
Q Consensus 70 ~~~~n~yli~~~~~~~~~~ilID~G~~~-------------~~~l~~~l~~~~---~~i~~IilTH~H~DH~ggl~~l~- 132 (182)
+..+||++|.. ++..||||+|... ...+.+.++..+ .++++||+||.|+||++|+..+.
T Consensus 12 g~~~~~~~I~~----~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~~~~~y 87 (298)
T PRK04286 12 GVRSMATFVET----KDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPFYEDPY 87 (298)
T ss_pred CceeeEEEEEE----CCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCcccccc
Confidence 44579999988 5789999999431 033333333332 36999999999999999876651
Q ss_pred ---------HhCCCCEEEecCC-C-----------C-------CCCceEcCCCCEEEeCCeEEEEEEcCCCC
Q 030144 133 ---------SKVPGVKSIISKA-S-----------G-------SKADLHVEHGDKVSFGDLFLEVCIVGGFQ 176 (182)
Q Consensus 133 ---------~~~p~~~v~~~~~-~-----------~-------~~~~~~~~~g~~~~~g~~~l~vi~tPGHT 176 (182)
..+...+++.... . . ......+.+++.+.+|+.++++...-.|.
T Consensus 88 ~~~~~~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig~~~V~~~~~v~H~ 159 (298)
T PRK04286 88 ELSDEEIPKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFGGTTIEFSPPVPHG 159 (298)
T ss_pred ccccccchHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEECCEEEEEeccCCCC
Confidence 2222223332110 0 0 00124467789999999998877533574
No 22
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.17 E-value=1.5e-10 Score=92.97 Aligned_cols=99 Identities=15% Similarity=0.038 Sum_probs=69.2
Q ss_pred CccEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHh-CCCCEEEecCCCC--
Q 030144 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSK-VPGVKSIISKASG-- 147 (182)
Q Consensus 71 ~~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~-~p~~~v~~~~~~~-- 147 (182)
....+|+|.. ++..+|||+|... +.+.+. ..++++|++||.|.||++|+..+... .+.++||+++...
T Consensus 35 r~~~s~li~~----~~~~iLiD~G~~~---~~~~~~--~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~ 105 (250)
T PRK11244 35 RRPCSALIEF----NGARTLIDAGLPD---LAERFP--PGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGC 105 (250)
T ss_pred cceeEEEEEE----CCCEEEEECCChH---HhhcCC--cccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhhH
Confidence 4456888877 4678999999531 222111 23699999999999999999887543 2357889876421
Q ss_pred ------C-CC--ceEcCCCCEEEeCCeEEEEEEcCCCCCCC
Q 030144 148 ------S-KA--DLHVEHGDKVSFGDLFLEVCIVGGFQAAL 179 (182)
Q Consensus 148 ------~-~~--~~~~~~g~~~~~g~~~l~vi~tPGHT~g~ 179 (182)
. .. ...+++++.+.+++.+++.+.+ .|+.++
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~I~~~~~-~H~~~s 145 (250)
T PRK11244 106 DDLFKHPGILDFSHPLEPFEPFDLGGLQVTPLPL-NHSKLT 145 (250)
T ss_pred HHHhcCccccccccccCCCCCeeECCEEEEEEee-CCCcce
Confidence 1 11 1347788999999999999887 677654
No 23
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.14 E-value=7.6e-11 Score=97.51 Aligned_cols=96 Identities=14% Similarity=0.149 Sum_probs=66.2
Q ss_pred cEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHc----CC---cccEEEcCCCChhhcCChHHHHHhCCCCEEEecCC
Q 030144 73 TYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKEL----GL---KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKA 145 (182)
Q Consensus 73 ~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~----~~---~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~~ 145 (182)
..+++|.+. ++..+|||+|.. ....+..+++. |+ +|++||+||.|.||+.|+..|++.. ..+||+++.
T Consensus 38 rss~ll~~~---g~~~iLID~Gpd-~r~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~~~-~lpVya~~~ 112 (302)
T TIGR02108 38 QSSIAVSAD---GERWVLLNASPD-IRQQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLREGQ-PFTLYATEM 112 (302)
T ss_pred ccEEEEEeC---CCEEEEEECCHH-HHHHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcCCC-CceEEECHH
Confidence 346777653 456899999964 33323333322 22 5999999999999999999998766 799999875
Q ss_pred CCC--------C------C-ceEcCCCCEEEeC-----CeEEEEEEcC
Q 030144 146 SGS--------K------A-DLHVEHGDKVSFG-----DLFLEVCIVG 173 (182)
Q Consensus 146 ~~~--------~------~-~~~~~~g~~~~~g-----~~~l~vi~tP 173 (182)
... . . ...++.++.+.++ +.+++.+.++
T Consensus 113 t~~~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~ 160 (302)
T TIGR02108 113 VLQDLSDNPIFNVLDHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVP 160 (302)
T ss_pred HHHHHHhCCCccccchhhccceEecCCCcEEecccccCCEEEEEEEcC
Confidence 310 0 0 0345666777664 4889889987
No 24
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.13 E-value=2e-10 Score=90.73 Aligned_cols=94 Identities=21% Similarity=0.262 Sum_probs=67.0
Q ss_pred CccEEEEEEecCCCCCceEEEcCCCC-ChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHhCCCCEEEecCCCC--
Q 030144 71 SSTYTYLLADVNHPDKPALLIDPVDK-TVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG-- 147 (182)
Q Consensus 71 ~~~n~yli~~~~~~~~~~ilID~G~~-~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~~~~-- 147 (182)
.+++||+|.. ++..+||||+.. .... .++....++|+|++||.|.||++++..+.++. ++++|+++...
T Consensus 6 lG~s~~li~~----~~~~iLiDP~~~~~~~~---~~~~~~~~id~vliTH~H~DH~~~~~~~~~~~-~~~v~~~~~~~~~ 77 (228)
T PRK00685 6 LGHSAFLIET----GGKKILIDPFITGNPLA---DLKPEDVKVDYILLTHGHGDHLGDTVEIAKRT-GATVIANAELANY 77 (228)
T ss_pred EcceEEEEEE----CCEEEEECCCCCCCCCC---CCChhcCcccEEEeCCCCccccccHHHHHHhC-CCEEEEeHHHHHH
Confidence 4578999987 578999998632 1110 11112337999999999999999998887654 78999876421
Q ss_pred -----CCCceEcCCCCEEEeCCeEEEEEEc
Q 030144 148 -----SKADLHVEHGDKVSFGDLFLEVCIV 172 (182)
Q Consensus 148 -----~~~~~~~~~g~~~~~g~~~l~vi~t 172 (182)
......++.|+++++++.+++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~ 107 (228)
T PRK00685 78 LSEKGVEKTHPMNIGGTVEFDGGKVKLTPA 107 (228)
T ss_pred HHhcCCCceeeccCCCcEEECCEEEEEEEE
Confidence 1123467788999999998887654
No 25
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.12 E-value=4.6e-10 Score=89.55 Aligned_cols=98 Identities=15% Similarity=0.042 Sum_probs=67.3
Q ss_pred ccEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHhC-CCCEEEecCCCC---
Q 030144 72 STYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKV-PGVKSIISKASG--- 147 (182)
Q Consensus 72 ~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~-p~~~v~~~~~~~--- 147 (182)
...+++|.. ++..+|||+|... +.+.+. ..+|++|++||.|.||++|+..+.... ...+||+++...
T Consensus 26 ~~~s~~i~~----~~~~iliD~G~~~---~~~~~~--~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~~ 96 (238)
T TIGR03307 26 QPCSAVIEF----NGARTLIDAGLTD---LAERFP--PGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGCD 96 (238)
T ss_pred cceEEEEEE----CCcEEEEECCChh---HhhccC--ccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhHH
Confidence 345677776 4678999999532 222111 236999999999999999997775432 357899876421
Q ss_pred -----CC---CceEcCCCCEEEeCCeEEEEEEcCCCCCCC
Q 030144 148 -----SK---ADLHVEHGDKVSFGDLFLEVCIVGGFQAAL 179 (182)
Q Consensus 148 -----~~---~~~~~~~g~~~~~g~~~l~vi~tPGHT~g~ 179 (182)
.. ....+..++.+.+++.+++.+.+ .|+.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~H~~~~ 135 (238)
T TIGR03307 97 DLFKHPGILDFSKPLEAFEPFDLGGLRVTPLPL-VHSKLT 135 (238)
T ss_pred HHhcCcccccccccccCCceEEECCEEEEEEec-CCCCcc
Confidence 11 11236778999999999998887 577654
No 26
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.10 E-value=1.1e-09 Score=90.01 Aligned_cols=99 Identities=22% Similarity=0.229 Sum_probs=75.8
Q ss_pred EEEEEEecCCCCCceEEEcCCC-CChHHHHHHHHHcCCc-ccEEEcCCCChhhcCChHHHHHhCCCCEEEecCCCCC---
Q 030144 74 YTYLLADVNHPDKPALLIDPVD-KTVDRDLNVIKELGLK-LVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGS--- 148 (182)
Q Consensus 74 n~yli~~~~~~~~~~ilID~G~-~~~~~l~~~l~~~~~~-i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~~~~~--- 148 (182)
.+.++..+ +..+++|+|. .....++.+|++.|++ ||.+++||.|.||+||+.++.+.++--++|+......
T Consensus 55 ~a~li~~~----~~~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v~~~~i~~~~~~~~~ 130 (293)
T COG2333 55 LATLIRSE----GKTILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKVPELWIYAGSDSTST 130 (293)
T ss_pred eEEEEeeC----CceEEeecCcccCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCCCcEEEeCCCCccch
Confidence 34555553 4699999996 2356789999999985 9999999999999999999999653345555543321
Q ss_pred -------CCceEcCCCCEEEeCCeEEEEEEcCCCC
Q 030144 149 -------KADLHVEHGDKVSFGDLFLEVCIVGGFQ 176 (182)
Q Consensus 149 -------~~~~~~~~g~~~~~g~~~l~vi~tPGHT 176 (182)
......+.|+.+.+++..++++.-++.+
T Consensus 131 ~~~~~~~~~~~~~~~G~~~~~~~~~f~vl~P~~~~ 165 (293)
T COG2333 131 FVLRDAGIPVRSCKAGDSWQWGGVVFQVLSPVGGV 165 (293)
T ss_pred hhhhhcCCceeccccCceEEECCeEEEEEcCCccc
Confidence 2345677899999999999999866543
No 27
>PRK02113 putative hydrolase; Provisional
Probab=99.10 E-value=2.8e-10 Score=91.45 Aligned_cols=95 Identities=17% Similarity=0.100 Sum_probs=66.7
Q ss_pred CccEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHcCC-cccEEEcCCCChhhcCChHHHHHh--CCCCEEEecCCCC
Q 030144 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL-KLVYAMNTHVHADHVTGTGLIKSK--VPGVKSIISKASG 147 (182)
Q Consensus 71 ~~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~-~i~~IilTH~H~DH~ggl~~l~~~--~p~~~v~~~~~~~ 147 (182)
-...+|+|.. ++..+|||+|...... +.+.+. ++++|++||.|+||++|++.+... ....+||+++...
T Consensus 33 R~~~s~li~~----~~~~iLiD~G~g~~~~----l~~~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~ 104 (252)
T PRK02113 33 RLRTSALVET----EGARILIDCGPDFREQ----MLRLPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVA 104 (252)
T ss_pred ceeeEEEEEE----CCeEEEEECCchHHHH----HHhcCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHH
Confidence 3456888877 4678999999642222 222243 699999999999999999887532 1357888876310
Q ss_pred ----------------C----CCceEcCCCCEEEeCCeEEEEEEcC
Q 030144 148 ----------------S----KADLHVEHGDKVSFGDLFLEVCIVG 173 (182)
Q Consensus 148 ----------------~----~~~~~~~~g~~~~~g~~~l~vi~tP 173 (182)
. .....+++|+.+++++.+++++.+.
T Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~ 150 (252)
T PRK02113 105 ERLRSRMPYCFVEHSYPGVPNIPLREIEPDRPFLVNHTEVTPLRVM 150 (252)
T ss_pred HHHHhhCCeeeccCCCCCCcceeeEEcCCCCCEEECCeEEEEEEec
Confidence 0 0123567889999999999998774
No 28
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=99.10 E-value=2.1e-10 Score=87.02 Aligned_cols=99 Identities=19% Similarity=0.203 Sum_probs=65.8
Q ss_pred CCccEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHhCCCCEEEecCCCCC-
Q 030144 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGS- 148 (182)
Q Consensus 70 ~~~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~~~~~- 148 (182)
..+-|+|+...+ ++.|+|||-.- .....+.+++.| .+++|++||. ||+.....+++.| +++||++..+..
T Consensus 20 n~dfng~~~~~p----~GnilIDP~~l-s~~~~~~l~a~g-gv~~IvLTn~--dHvR~A~~ya~~~-~a~i~~p~~d~~~ 90 (199)
T PF14597_consen 20 NLDFNGHAWRRP----EGNILIDPPPL-SAHDWKHLDALG-GVAWIVLTNR--DHVRAAEDYAEQT-GAKIYGPAADAAQ 90 (199)
T ss_dssp TEEEEEEEE--T----T--EEES------HHHHHHHHHTT---SEEE-SSG--GG-TTHHHHHHHS---EEEEEGGGCCC
T ss_pred ccCceeEEEEcC----CCCEEecCccc-cHHHHHHHHhcC-CceEEEEeCC--hhHhHHHHHHHHh-CCeeeccHHHHhh
Confidence 556788888774 68899999853 567788888876 5999999998 9999999999999 999999987643
Q ss_pred ---CCceEcCCCCEEEeCCeEEEEEEcCC-CCCCCC
Q 030144 149 ---KADLHVEHGDKVSFGDLFLEVCIVGG-FQAALS 180 (182)
Q Consensus 149 ---~~~~~~~~g~~~~~g~~~l~vi~tPG-HT~g~~ 180 (182)
..+..+.+|+++ ++| +++++.|| ||||.+
T Consensus 91 ~p~~~D~~l~dge~i-~~g--~~vi~l~G~ktpGE~ 123 (199)
T PF14597_consen 91 FPLACDRWLADGEEI-VPG--LWVIHLPGSKTPGEL 123 (199)
T ss_dssp -SS--SEEE-TT-BS-STT--EEEEEE-SSSSTTEE
T ss_pred CCCCCccccccCCCc-cCc--eEEEEcCCCCCCcee
Confidence 346788899854 355 88999999 999965
No 29
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.04 E-value=2.4e-10 Score=94.53 Aligned_cols=99 Identities=11% Similarity=0.061 Sum_probs=66.8
Q ss_pred CccEEEEEEecCCCCCceEEEcCCCCChHHHHHH--HHH-cCC---cccEEEcCCCChhhcCChHHHHHhCCCCEEEecC
Q 030144 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNV--IKE-LGL---KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISK 144 (182)
Q Consensus 71 ~~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~--l~~-~~~---~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~ 144 (182)
....+|+|..+ ++..+|||+|.....++.+. +.. .|+ +|++||+||.|+||+.|++.|+... ..+||+++
T Consensus 37 R~~ss~li~~~---g~~~iLiD~G~g~~~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~~~-~l~Vyg~~ 112 (302)
T PRK05184 37 RTQSSIAVSAD---GEDWVLLNASPDIRQQIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLREGQ-PFPVYATP 112 (302)
T ss_pred ccccEEEEEcC---CCEEEEEECChhHHHHHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhccCC-CeEEEeCH
Confidence 34568888753 33569999996533333332 100 122 5999999999999999999997654 78899876
Q ss_pred CCC-----C-----------CC-ceEcCCCCEEEeC---CeEEEEEEcC
Q 030144 145 ASG-----S-----------KA-DLHVEHGDKVSFG---DLFLEVCIVG 173 (182)
Q Consensus 145 ~~~-----~-----------~~-~~~~~~g~~~~~g---~~~l~vi~tP 173 (182)
... . .. ...+..++.++++ +.+++.+.++
T Consensus 113 ~~~~~l~~~~~~f~~~~~~~~~~~~~i~~~~~~~i~~~~~~~Vt~~~v~ 161 (302)
T PRK05184 113 AVLEDLSTGFPIFNVLDHYGGVQRRPIALDGPFAVPGLPGLRFTAFPVP 161 (302)
T ss_pred HHHHHHHhcCCcccccccccceeeEEecCCCceEecCCCCcEEEEEEcC
Confidence 421 0 01 1346667888886 7899998885
No 30
>PRK00055 ribonuclease Z; Reviewed
Probab=99.03 E-value=1.3e-09 Score=87.82 Aligned_cols=66 Identities=21% Similarity=0.200 Sum_probs=48.3
Q ss_pred ccEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHcCC---cccEEEcCCCChhhcCChHHHHHhC------CCCEEEe
Q 030144 72 STYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSKV------PGVKSII 142 (182)
Q Consensus 72 ~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~---~i~~IilTH~H~DH~ggl~~l~~~~------p~~~v~~ 142 (182)
.++||+|.. ++..+|||||.. ....+.+.++ ++++||+||.|+||++|++.|...+ ...+||+
T Consensus 19 ~~~~~li~~----~~~~iLiD~G~g----~~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~ 90 (270)
T PRK00055 19 NVSSILLRL----GGELFLFDCGEG----TQRQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYG 90 (270)
T ss_pred CCCEEEEEE----CCcEEEEECCHH----HHHHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEEC
Confidence 478999987 467899999964 2233333443 5999999999999999999887432 2456887
Q ss_pred cCC
Q 030144 143 SKA 145 (182)
Q Consensus 143 ~~~ 145 (182)
++.
T Consensus 91 p~~ 93 (270)
T PRK00055 91 PKG 93 (270)
T ss_pred Ccc
Confidence 654
No 31
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=98.99 E-value=4.2e-09 Score=86.49 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=67.7
Q ss_pred CccEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHcCC---cccEEEcCCCChhhcCChHHHHHhC------CCCEEE
Q 030144 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSKV------PGVKSI 141 (182)
Q Consensus 71 ~~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~---~i~~IilTH~H~DH~ggl~~l~~~~------p~~~v~ 141 (182)
..++|++|.. ++..+|||+|.. +...+.+.++ ++++||+||.|+||++|++.+.... ...+||
T Consensus 16 r~~~~~~v~~----~~~~iLiD~G~g----~~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy 87 (299)
T TIGR02651 16 RNLPSIALKL----NGELWLFDCGEG----TQRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIY 87 (299)
T ss_pred CCCceEEEEE----CCeEEEEECCHH----HHHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEE
Confidence 4567899987 467899999964 2234444443 5899999999999999999887531 146788
Q ss_pred ecCCCC-------------CCC---ceEcCCCC-EEEeCCeEEEEEEcCCCC
Q 030144 142 ISKASG-------------SKA---DLHVEHGD-KVSFGDLFLEVCIVGGFQ 176 (182)
Q Consensus 142 ~~~~~~-------------~~~---~~~~~~g~-~~~~g~~~l~vi~tPGHT 176 (182)
+++... ... ...+++++ .+..++.+++.+.+. |+
T Consensus 88 ~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-H~ 138 (299)
T TIGR02651 88 GPPGIKEFIETSLRVSYTYLNYPIKIHEIEEGGLVFEDDGFKVEAFPLD-HS 138 (299)
T ss_pred CCccHHHHHHHHHHHcccCCCceEEEEEccCCCceEecCCEEEEEEEcC-CC
Confidence 876421 011 13466777 588899999988875 44
No 32
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=98.98 E-value=4.5e-09 Score=86.83 Aligned_cols=102 Identities=14% Similarity=0.095 Sum_probs=66.7
Q ss_pred CCccEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHcCC---cccEEEcCCCChhhcCChHHHHHh--C----CCCEE
Q 030144 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSK--V----PGVKS 140 (182)
Q Consensus 70 ~~~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~---~i~~IilTH~H~DH~ggl~~l~~~--~----p~~~v 140 (182)
...+.||+|...+..++..+|||||.+.. ..+.+.++ +|++||+||.|+||++|++.|... + ...+|
T Consensus 14 ~r~~s~~lv~~~~~~~~~~iLiD~G~g~~----~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~I 89 (303)
T TIGR02649 14 TRNVTAILLNLQHPTQSGLWLFDCGEGTQ----HQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTI 89 (303)
T ss_pred CCCccEEEEEccCCCCCCEEEEECCccHH----HHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEE
Confidence 45677899864210014689999997532 23333443 599999999999999999987532 1 24688
Q ss_pred EecCCCC-------------C--CC-ceEcCCCCEEEeCCeEEEEEEcCCCC
Q 030144 141 IISKASG-------------S--KA-DLHVEHGDKVSFGDLFLEVCIVGGFQ 176 (182)
Q Consensus 141 ~~~~~~~-------------~--~~-~~~~~~g~~~~~g~~~l~vi~tPGHT 176 (182)
|+++... . .. ...+.+++.+..++.+++.+.+. |+
T Consensus 90 ygp~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~-H~ 140 (303)
T TIGR02649 90 YGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLE-HP 140 (303)
T ss_pred EechhHHHHHHHHHHhcccccCCceEEEEcCCCceEecCCeEEEEEEcc-Cc
Confidence 9887421 0 11 13456677888888888887763 44
No 33
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=1.7e-09 Score=93.40 Aligned_cols=105 Identities=15% Similarity=0.110 Sum_probs=74.9
Q ss_pred CCccEEEEEEecCCCCCceEEEcCCCCChHHH--HHHHHHcCCcccEEEcCCCChhhcCChHHHHHhCCCCEEEecCCCC
Q 030144 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRD--LNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG 147 (182)
Q Consensus 70 ~~~~n~yli~~~~~~~~~~ilID~G~~~~~~l--~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~~~~ 147 (182)
..+..|.++.. ++..+++|||....... ........ ++|++++||+|.||+|+++.+....-+.+||+++.+.
T Consensus 11 evg~s~~~l~~----~~~~il~D~G~~~~~~~~~~p~~~~~~-~vDavllTHaHlDH~g~lp~l~~~~~~~~v~aT~~T~ 85 (427)
T COG1236 11 EVGRSCVLLET----GGTRILLDCGLFPGDPSPERPLLPPFP-KVDAVLLTHAHLDHIGALPYLVRNGFEGPVYATPPTA 85 (427)
T ss_pred CcCcEEEEEEE----CCceEEEECCCCcCcCCccCCCCCCCC-CcCEEEeccCchhhhcccHHHHHhccCCceeeccCHH
Confidence 45667888887 46899999996322111 11110011 4899999999999999999997743257899887531
Q ss_pred -------------C-----------------CCceEcCCCCEEEeCCeEEEEEEcCCCCCCCC
Q 030144 148 -------------S-----------------KADLHVEHGDKVSFGDLFLEVCIVGGFQAALS 180 (182)
Q Consensus 148 -------------~-----------------~~~~~~~~g~~~~~g~~~l~vi~tPGHT~g~~ 180 (182)
. ...+.+.-|+++++++++++++++ ||.+|+.
T Consensus 86 ~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~A-GHilGsa 147 (427)
T COG1236 86 ALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNA-GHILGSA 147 (427)
T ss_pred HHHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEecC-CCcccee
Confidence 0 111347889999999999988886 9999985
No 34
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=98.90 E-value=1.9e-09 Score=92.78 Aligned_cols=107 Identities=15% Similarity=0.127 Sum_probs=73.7
Q ss_pred CCccEEEEEEecCCCCCceEEEcCCCCCh---HHHHHHH---HHcCCcccEEEcCCCChhhcCChHHHHHhCCCCEEEec
Q 030144 70 ESSTYTYLLADVNHPDKPALLIDPVDKTV---DRDLNVI---KELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIIS 143 (182)
Q Consensus 70 ~~~~n~yli~~~~~~~~~~ilID~G~~~~---~~l~~~l---~~~~~~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~ 143 (182)
..+-+|+++..+ ...||+|||.... .....++ +-.-..+|+|++||+|.||+|-++.|.+.-.+-+|||.
T Consensus 191 EVGRSa~lv~T~----eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~LfkYgy~GPVY~T 266 (637)
T COG1782 191 EVGRSALLVSTP----ESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFKYGYDGPVYCT 266 (637)
T ss_pred hccceeEEEecC----CceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhhcCCCCCeeeC
Confidence 457789999884 6889999995311 1112222 11122599999999999999999999875336799998
Q ss_pred CCC------------------C--CC-----------CceEcCCCCEEEeC-CeEEEEEEcCCCCCCCCC
Q 030144 144 KAS------------------G--SK-----------ADLHVEHGDKVSFG-DLFLEVCIVGGFQAALSK 181 (182)
Q Consensus 144 ~~~------------------~--~~-----------~~~~~~~g~~~~~g-~~~l~vi~tPGHT~g~~~ 181 (182)
+.+ + ++ -...+..|+.-++. |.++++.+. ||-.||..
T Consensus 267 ~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NA-GHILGSA~ 335 (637)
T COG1782 267 PPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNA-GHILGSAM 335 (637)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecc-cchhccee
Confidence 753 1 00 11346667766664 678887775 99999864
No 35
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=98.77 E-value=2.4e-09 Score=81.97 Aligned_cols=89 Identities=19% Similarity=0.179 Sum_probs=57.3
Q ss_pred eEEEcCCCCChH-HHHHHHHHcCC---cccEEEcCCCChhhcCChHHHHHhC---CCCEEEecCCCC-------------
Q 030144 88 ALLIDPVDKTVD-RDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSKV---PGVKSIISKASG------------- 147 (182)
Q Consensus 88 ~ilID~G~~~~~-~l~~~l~~~~~---~i~~IilTH~H~DH~ggl~~l~~~~---p~~~v~~~~~~~------------- 147 (182)
.+|||||..... .+.+.+..... ++++|++||.|.||+.|+..|.... ++ ++|+++...
T Consensus 2 ~iLiD~g~~~~~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~-~i~~~~~~~~~l~~~~~~~~~~ 80 (194)
T PF12706_consen 2 RILIDCGPGTRSLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPK-PIYGPPETKEFLREYKFGILDL 80 (194)
T ss_dssp EEEESE-TTHHHHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT-EEEECHHHHHHHHHHHHTHHTT
T ss_pred EEEEeCCCCcccccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccc-eEEecHHHHHHHHhhhcccccc
Confidence 589999974220 12223322221 7999999999999999977776543 33 899886321
Q ss_pred --C-C--CceEcCCCCEEEeCCeEEEEEEcCCCCCC
Q 030144 148 --S-K--ADLHVEHGDKVSFGDLFLEVCIVGGFQAA 178 (182)
Q Consensus 148 --~-~--~~~~~~~g~~~~~g~~~l~vi~tPGHT~g 178 (182)
. . ....+.+++.+++++.+++++.+ .|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~H~~~ 115 (194)
T PF12706_consen 81 YPEEDNFDIIEISPGDEFEIGDFRITPFPA-NHGPP 115 (194)
T ss_dssp CCTTSGEEEEEECTTEEEEETTEEEEEEEE-ESSSC
T ss_pred cccccceeEEEeccCceEEeceEEEEEEec-ccccc
Confidence 0 0 12456678899999999999976 45544
No 36
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.56 E-value=2.9e-07 Score=79.25 Aligned_cols=108 Identities=22% Similarity=0.294 Sum_probs=71.9
Q ss_pred EEEEeeCCCccEEEEEEecCCCCCceEEEcCCCC--ChHHHHHHH-HHcC-CcccEEEcCCCChhhcCChHHHHHhC---
Q 030144 63 FRQTFEKESSTYTYLLADVNHPDKPALLIDPVDK--TVDRDLNVI-KELG-LKLVYAMNTHVHADHVTGTGLIKSKV--- 135 (182)
Q Consensus 63 i~~~~~~~~~~n~yli~~~~~~~~~~ilID~G~~--~~~~l~~~l-~~~~-~~i~~IilTH~H~DH~ggl~~l~~~~--- 135 (182)
|+|...- .-+|.-+|.+ +.+.|+|||=.. .++.-++.. +.+| .+|.+|+.||.|.||.||+..+.+.-
T Consensus 117 iYQVRG~-DisNITfveG----dtg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~ 191 (655)
T COG2015 117 IYQVRGF-DISNITFVEG----DTGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVK 191 (655)
T ss_pred eeEeecc-cccceEEEcC----CcceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHcc
Confidence 3444432 3345556665 468999999742 122333333 3344 47999999999999999998886542
Q ss_pred -CCCEEEecCCC---------------------------------------------C-----CCCceEcCCCCEEEeCC
Q 030144 136 -PGVKSIISKAS---------------------------------------------G-----SKADLHVEHGDKVSFGD 164 (182)
Q Consensus 136 -p~~~v~~~~~~---------------------------------------------~-----~~~~~~~~~g~~~~~g~ 164 (182)
..++|++++.- + .+....-+.|+++.++|
T Consensus 192 sGkV~iiAP~GFme~avaENvlAGnaM~RRa~YqyG~~Lp~g~~G~V~~giGk~la~G~vsLiaPT~~I~~~gE~~~iDG 271 (655)
T COG2015 192 SGKVQIIAPAGFMEEAVAENVLAGNAMSRRAQYQYGTLLPPGAQGQVGCGIGKTLATGEVSLIAPTKIIEETGETLTIDG 271 (655)
T ss_pred cCceeEecchhHHHHHHHHhhhhhhhHhhhhhhhhccccCCCccCccccccccccccCceeeecceEEeeccCceEEEec
Confidence 35788887630 0 11123456799999999
Q ss_pred eEEEEEEcCCC
Q 030144 165 LFLEVCIVGGF 175 (182)
Q Consensus 165 ~~l~vi~tPGH 175 (182)
+++++..|||-
T Consensus 272 V~~~Fq~tPgt 282 (655)
T COG2015 272 VEFEFQMTPGT 282 (655)
T ss_pred eEEEEeeCCCC
Confidence 99999999984
No 37
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.44 E-value=2.8e-07 Score=74.96 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=37.4
Q ss_pred ceEEEcCCCCChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHhCCCCEEEecC
Q 030144 87 PALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISK 144 (182)
Q Consensus 87 ~~ilID~G~~~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~ 144 (182)
+.++||+|.. ...+.++..-..+++||+||.|+||+.|++.|++.+ ..++++..
T Consensus 41 ~~~lid~g~~---~~~~~~~~~~~~idai~~TH~H~DHi~Gl~~l~~~~-~~~~~~~~ 94 (269)
T COG1235 41 KTLLIDAGPD---LRDQGLRLGVSDLDAILLTHEHSDHIQGLDDLRRAY-TLPIYVNP 94 (269)
T ss_pred eeEEEecChh---HHhhhhcccccccCeEEEecccHHhhcChHHHHHHh-cCCccccc
Confidence 3667787742 122222211235999999999999999999999987 56666554
No 38
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=98.39 E-value=2.2e-06 Score=76.27 Aligned_cols=106 Identities=13% Similarity=0.064 Sum_probs=74.2
Q ss_pred CCCccEEEEEEecCCCCCceEEEcCCCCC--hHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHhC-CCCEEEecCC
Q 030144 69 KESSTYTYLLADVNHPDKPALLIDPVDKT--VDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKV-PGVKSIISKA 145 (182)
Q Consensus 69 ~~~~~n~yli~~~~~~~~~~ilID~G~~~--~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~-p~~~v~~~~~ 145 (182)
...+..||++.- ++-.+|||||+.. ...+++.++..-.+||+|++||...-|+||+++...+. -+|+||++-.
T Consensus 11 ~de~~~cyllqi----D~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT~P 86 (764)
T KOG1135|consen 11 TDEGPLCYLLQI----DGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYATLP 86 (764)
T ss_pred cCCCcceEEEEE----cCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccceEEEecc
Confidence 356778999987 4789999999742 22344445444457999999999999999999997764 3589998753
Q ss_pred C-------------------------------CCCCceEcCCCCEEEeCC----eEEEEEEcCCCCCCC
Q 030144 146 S-------------------------------GSKADLHVEHGDKVSFGD----LFLEVCIVGGFQAAL 179 (182)
Q Consensus 146 ~-------------------------------~~~~~~~~~~g~~~~~g~----~~l~vi~tPGHT~g~ 179 (182)
. .+.....++..+.+.+.| .++..++. ||++|.
T Consensus 87 V~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynA-GhmiGG 154 (764)
T KOG1135|consen 87 VIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNA-GHMIGG 154 (764)
T ss_pred hhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecC-CCccCc
Confidence 1 011113456666666654 47777665 999985
No 39
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=98.35 E-value=1.8e-06 Score=73.05 Aligned_cols=62 Identities=24% Similarity=0.285 Sum_probs=44.7
Q ss_pred cccEEEcCCCChhhcC--ChHHHHHhC-CCCEEEecCCC-------CC--CCceEcCCCCEEEeCCeEEEEEEc
Q 030144 111 KLVYAMNTHVHADHVT--GTGLIKSKV-PGVKSIISKAS-------GS--KADLHVEHGDKVSFGDLFLEVCIV 172 (182)
Q Consensus 111 ~i~~IilTH~H~DH~g--gl~~l~~~~-p~~~v~~~~~~-------~~--~~~~~~~~g~~~~~g~~~l~vi~t 172 (182)
+||+|++||.|.||+. .+..+.+.. +.++++++... +. .....++.|+++.+++.+++++.+
T Consensus 109 ~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~~Gvp~~rv~~v~~Ge~i~ig~v~It~lpa 182 (355)
T PRK11709 109 EIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWIGWGVPKERCIVVKPGDVVKVKDIKIHALDS 182 (355)
T ss_pred CCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHHhcCCCcceEEEecCCCcEEECCEEEEEEec
Confidence 5999999999999994 345555544 35677776532 11 123567899999999999998865
No 40
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=98.33 E-value=9.7e-07 Score=73.09 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=52.3
Q ss_pred CCccEEEEEEecCCCCCceEEEcCCCC----ChHH--HHHHHHHcCC---cccEEEcCCCChhhcCChHHHHHhC-CCCE
Q 030144 70 ESSTYTYLLADVNHPDKPALLIDPVDK----TVDR--DLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSKV-PGVK 139 (182)
Q Consensus 70 ~~~~n~yli~~~~~~~~~~ilID~G~~----~~~~--l~~~l~~~~~---~i~~IilTH~H~DH~ggl~~l~~~~-p~~~ 139 (182)
..+-+|.|+.- +++.|++|||.. +..+ -..++.+.|. -|+.|++||.|.||+|+++++.+.. .+-+
T Consensus 14 dvGrSCilvsi----~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~GY~GP 89 (501)
T KOG1136|consen 14 DVGRSCILVSI----GGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVGYDGP 89 (501)
T ss_pred ccCceEEEEEE----CCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchHhhhCCCCc
Confidence 45678888877 578999999941 1111 1345554442 4999999999999999999998863 2678
Q ss_pred EEecCC
Q 030144 140 SIISKA 145 (182)
Q Consensus 140 v~~~~~ 145 (182)
+|++-.
T Consensus 90 IYMt~P 95 (501)
T KOG1136|consen 90 IYMTYP 95 (501)
T ss_pred eEEecc
Confidence 998653
No 41
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=98.32 E-value=7.7e-07 Score=73.38 Aligned_cols=66 Identities=23% Similarity=0.231 Sum_probs=45.4
Q ss_pred ccEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHcCC---cccEEEcCCCChhhcCChHHHHHhC------CCCEEEe
Q 030144 72 STYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSKV------PGVKSII 142 (182)
Q Consensus 72 ~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~---~i~~IilTH~H~DH~ggl~~l~~~~------p~~~v~~ 142 (182)
...++++.. .++.+|||||.+. ...+...++ +|++|++||.|.||+.|++.|.... ....+|.
T Consensus 19 ~~~s~ll~~----~~~~~L~DcGeGt----~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iyg 90 (292)
T COG1234 19 NVSSILLRL----EGEKFLFDCGEGT----QHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYG 90 (292)
T ss_pred ccceeEEEe----CCeeEEEECCHhH----HHHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEEC
Confidence 345777775 3678999999642 233333333 5899999999999999999876432 1256777
Q ss_pred cCC
Q 030144 143 SKA 145 (182)
Q Consensus 143 ~~~ 145 (182)
++.
T Consensus 91 P~g 93 (292)
T COG1234 91 PPG 93 (292)
T ss_pred Ccc
Confidence 643
No 42
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.23 E-value=1.3e-06 Score=65.70 Aligned_cols=48 Identities=21% Similarity=0.206 Sum_probs=31.1
Q ss_pred CccEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHcCCcccEEEcCCCChhhcCC
Q 030144 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTG 127 (182)
Q Consensus 71 ~~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~IilTH~H~DH~gg 127 (182)
.+.+||+|.. ++..||+||.... ........++|+|++||.|.||+.-
T Consensus 5 lgha~~~ie~----~g~~iliDP~~~~-----~~~~~~~~~~D~IlisH~H~DH~~~ 52 (163)
T PF13483_consen 5 LGHASFLIET----GGKRILIDPWFSS-----VGYAPPPPKADAILISHSHPDHFDP 52 (163)
T ss_dssp EETTEEEEEE----TTEEEEES--TTT-------T-TSS-B-SEEEESSSSTTT-CC
T ss_pred EEeeEEEEEE----CCEEEEECCCCCc-----cCcccccCCCCEEEECCCccccCCh
Confidence 4678999998 5799999999521 1111112479999999999999865
No 43
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.18 E-value=7.3e-06 Score=66.14 Aligned_cols=104 Identities=21% Similarity=0.322 Sum_probs=62.8
Q ss_pred CCceEEEEEeeCCCccEEEEEEecCCCCCceEEEcCCCCChHHHHH----HHHHcCCcccEEEcCCCChhhcCChHHHHH
Q 030144 58 SSKLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLN----VIKELGLKLVYAMNTHVHADHVTGTGLIKS 133 (182)
Q Consensus 58 ~~~~~i~~~~~~~~~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~----~l~~~~~~i~~IilTH~H~DH~ggl~~l~~ 133 (182)
..+|++.. .+.+|++|.. ++..+||||.......-.. .....-..+|+|++||.|.||++.-.....
T Consensus 4 ~~~m~itw-----lGha~~lie~----~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~ 74 (258)
T COG2220 4 AEDMKITW-----LGHAAFLIET----GGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIAL 74 (258)
T ss_pred CcCceEEE-----ecceEEEEEE----CCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHH
Confidence 34567664 5788999988 4689999998531110000 001112259999999999999987665554
Q ss_pred hCC-CCEEEecCCC-------CCC--CceEcCCCCEEEeCCeEEEEE
Q 030144 134 KVP-GVKSIISKAS-------GSK--ADLHVEHGDKVSFGDLFLEVC 170 (182)
Q Consensus 134 ~~p-~~~v~~~~~~-------~~~--~~~~~~~g~~~~~g~~~l~vi 170 (182)
... .+.++.++.. +.. ....+..|+.+++++.++.++
T Consensus 75 ~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~ 121 (258)
T COG2220 75 RTNKAPVVVVPLGAGDLLIRDGVEAERVHELGWGDVIELGDLEITAV 121 (258)
T ss_pred hcCCCcEEEeHHHHHHHHHhcCCCcceEEeecCCceEEecCcEEEEE
Confidence 432 3444444432 111 123455688888888775443
No 44
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=97.91 E-value=1.4e-05 Score=65.17 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=39.8
Q ss_pred ceEEEc-CCCCChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHH-h------CCCCEEEecCC
Q 030144 87 PALLID-PVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKS-K------VPGVKSIISKA 145 (182)
Q Consensus 87 ~~ilID-~G~~~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~-~------~p~~~v~~~~~ 145 (182)
..+|+| .|......+.+.+. .++.+|+||.|.||++|++.+.- . -+...||.++.
T Consensus 19 ~~ilfD~ag~g~~~~l~~k~~----~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g 81 (277)
T TIGR02650 19 EEIIFDAAEEGSSTLGGKKVA----AFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKE 81 (277)
T ss_pred hhheehhhcccchhHHhhhHh----hcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcc
Confidence 679999 88765555555554 48899999999999999965543 1 12356888775
No 45
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=97.65 E-value=5.1e-05 Score=66.42 Aligned_cols=79 Identities=14% Similarity=0.059 Sum_probs=52.8
Q ss_pred ceEEEEEeeC-CCccEEEEEEecCCCCCceEEEcCCCC------ChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHH
Q 030144 60 KLLFRQTFEK-ESSTYTYLLADVNHPDKPALLIDPVDK------TVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIK 132 (182)
Q Consensus 60 ~~~i~~~~~~-~~~~n~yli~~~~~~~~~~ilID~G~~------~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~ 132 (182)
.+.|..+-.+ ..+-.|.++.- +++.|+.|||.. ..-.+.+.++.. .+|.+++||.|.||++.++++.
T Consensus 13 ~l~~~pLGag~EVGRSC~ile~----kGk~iMld~gvhpaysg~aslpf~d~vd~s--~id~llIthFhldh~aslp~~~ 86 (668)
T KOG1137|consen 13 QLKFTPLGAGNEVGRSCHILEY----KGKTIMLDCGVHPAYSGMASLPFYDEVDLS--AIDPLLITHFHLDHAASLPFTL 86 (668)
T ss_pred cEEEEECCCCcccCceEEEEEe----cCeEEEeccccCccccccccccchhhcccc--cccHHHHhhhhhhhccccccee
Confidence 3556555433 56678888887 578999999942 111122222211 4899999999999999999997
Q ss_pred HhC-CCCEEEecC
Q 030144 133 SKV-PGVKSIISK 144 (182)
Q Consensus 133 ~~~-p~~~v~~~~ 144 (182)
++. -.-++|+..
T Consensus 87 qkTsf~grvfmth 99 (668)
T KOG1137|consen 87 QKTSFIGRVFMTH 99 (668)
T ss_pred eeccccceeEEec
Confidence 763 145666544
No 46
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=6.1e-05 Score=61.34 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=63.6
Q ss_pred EEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHcCC---cccEEEcCCCChhhcCChHHHHHhCCCCEEEecCCCC---
Q 030144 74 YTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG--- 147 (182)
Q Consensus 74 n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~---~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~~~~--- 147 (182)
+.-++.+ ++..+++|+|.. .|.+.+. .|+.+++||.+.+|.|++..+. ..+++.+..+.
T Consensus 96 ~~tl~~d----~~~v~v~~~gls-------~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f~----~sp~l~~s~e~~gr 160 (302)
T KOG4736|consen 96 QITLVVD----GGDVVVVDTGLS-------VLAKEGVTLDQIDSVVITHKSPGHLGNNNLFP----QSPILYHSMEYIGR 160 (302)
T ss_pred ccceeec----CCceEEEecCCc-------hhhhcCcChhhcceeEEeccCccccccccccc----CCHHHhhhhhhcCC
Confidence 3445555 578999999964 4555554 5899999999999999998754 33343333321
Q ss_pred CCCceEcCCCCEEEeCCeEEEEEEcCCCCCCCCC
Q 030144 148 SKADLHVEHGDKVSFGDLFLEVCIVGGFQAALSK 181 (182)
Q Consensus 148 ~~~~~~~~~g~~~~~g~~~l~vi~tPGHT~g~~~ 181 (182)
......++++..++|+ ..+++-.|||||+-.++
T Consensus 161 ~~~pt~l~e~~~~~l~-~~~~V~~TpGht~~~is 193 (302)
T KOG4736|consen 161 HVTPTELDERPYLKLS-PNVEVWKTPGHTQHDIS 193 (302)
T ss_pred ccChhhhccCCccccC-CceeEeeCCCCCCcceE
Confidence 1223456777778887 46888889999987654
No 47
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=97.55 E-value=0.00047 Score=55.35 Aligned_cols=101 Identities=17% Similarity=0.193 Sum_probs=57.6
Q ss_pred cEEEEEEecCCCCCceEEEcCCCC----------C---h---HHHHHHHHHcCCcccEEEcCCCChhhcCC---------
Q 030144 73 TYTYLLADVNHPDKPALLIDPVDK----------T---V---DRDLNVIKELGLKLVYAMNTHVHADHVTG--------- 127 (182)
Q Consensus 73 ~n~yli~~~~~~~~~~ilID~G~~----------~---~---~~l~~~l~~~~~~i~~IilTH~H~DH~gg--------- 127 (182)
+-|.+|.. .+-.||||||.. . . .+..+.+++.-.+.+.|.+||.|+||..-
T Consensus 15 SmAt~vet----~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~~y~~s 90 (304)
T COG2248 15 SMATFVET----KDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDGIYEAS 90 (304)
T ss_pred hhhheeec----CCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccccchhhhc
Confidence 33555666 467899999942 1 1 12222233333457899999999999754
Q ss_pred hHHHHHhCCCCEEEe-cCCC------------------CCCCceEcCCCCEEEeCCeEEEEEEcCCCCC
Q 030144 128 TGLIKSKVPGVKSII-SKAS------------------GSKADLHVEHGDKVSFGDLFLEVCIVGGFQA 177 (182)
Q Consensus 128 l~~l~~~~p~~~v~~-~~~~------------------~~~~~~~~~~g~~~~~g~~~l~vi~tPGHT~ 177 (182)
...-.+.|.+-.+++ ++.+ ....+..+.||.+|+||+..+++-..-=|-+
T Consensus 91 ~e~~~eiY~gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG~t~IefS~pvpHG~ 159 (304)
T COG2248 91 GETAKEIYKGKLLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEFGGTVIEFSPPVPHGR 159 (304)
T ss_pred ccchHHHhcCcEEEecCchhhhCHHHHHHHHHHHHHhhhhcceeEecCCceEEeCCEEEEecCCCCCCC
Confidence 112223342322332 1111 0123456779999999999888755323433
No 48
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=96.87 E-value=0.00061 Score=61.59 Aligned_cols=60 Identities=22% Similarity=0.147 Sum_probs=40.8
Q ss_pred cEEEEEEecCCCCCceEEEcCCCCChHHHHHHHH-Hc----CCcccEEEcCCCChhhcCChHHHHHhC
Q 030144 73 TYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIK-EL----GLKLVYAMNTHVHADHVTGTGLIKSKV 135 (182)
Q Consensus 73 ~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~-~~----~~~i~~IilTH~H~DH~ggl~~l~~~~ 135 (182)
..+|+|.-+ .+..||.|||.+..-++...-. +. -.++.+|++||.|.||.-|+..+.+++
T Consensus 461 VSS~lv~i~---~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~vL~~r 525 (746)
T KOG2121|consen 461 VSSILVRID---SDDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHADHHLGLISVLQAR 525 (746)
T ss_pred eEEEEEecc---CCccEEeecCCchHHHHHHHhhhcchHHHHHhHHHHHHHhhcccccccHHHHHHHH
Confidence 457777764 3446999999764444433222 11 125899999999999999988776543
No 49
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=95.90 E-value=0.013 Score=49.23 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=35.7
Q ss_pred CccEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHc---------------------------CCcccEEEcCCCChh
Q 030144 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKEL---------------------------GLKLVYAMNTHVHAD 123 (182)
Q Consensus 71 ~~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~---------------------------~~~i~~IilTH~H~D 123 (182)
....+||+.... .+..+-+|+|.. ...+.+.+.+. ...|...++||.|.|
T Consensus 15 ~nls~~L~~~~~--~~s~ialDagt~-l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I~~ylItH~HLD 91 (335)
T PF02112_consen 15 GNLSAYLVRSIG--SNSFIALDAGTL-LSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHIKGYLITHPHLD 91 (335)
T ss_pred CCcceeeeeecC--cCceEEecCccH-HHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhhheEEecCCchh
Confidence 445688887753 567889999842 11111111110 013789999999999
Q ss_pred hcCChH
Q 030144 124 HVTGTG 129 (182)
Q Consensus 124 H~ggl~ 129 (182)
|+.|+-
T Consensus 92 Hi~gLv 97 (335)
T PF02112_consen 92 HIAGLV 97 (335)
T ss_pred hHHHHH
Confidence 999975
No 50
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=94.76 E-value=0.026 Score=49.45 Aligned_cols=66 Identities=11% Similarity=0.035 Sum_probs=47.8
Q ss_pred cccEEEcCCCChhhcCChHHHHHhCCCCEEEecCCCCC----------CCceEcCCCCEEEeCCeEEEEEEcCCCCCCCC
Q 030144 111 KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGS----------KADLHVEHGDKVSFGDLFLEVCIVGGFQAALS 180 (182)
Q Consensus 111 ~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~~~~~----------~~~~~~~~g~~~~~g~~~l~vi~tPGHT~g~~ 180 (182)
...+=++||.|.||..|+..-... -++||+..++. .....+.-++.+.+.+..+.++.. -|+||.+
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~sW~~---p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~~~~~i~~~~vt~ldA-nHCPGa~ 187 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLTKSWSH---PPLYCSPITARLVPLKVSVTKQSIQALDLNQPLEIPGIQVTLLDA-NHCPGAV 187 (481)
T ss_pred ccceeeeecccccccccccccccC---CcccccccchhhhhhhcccChhhceeecCCCceeecceEEEEecc-ccCCCce
Confidence 478999999999999987664332 33999886531 123456667888888877777765 7888875
No 51
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=94.31 E-value=0.1 Score=33.14 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=28.7
Q ss_pred CceEEE-cCCCCChHHHHHHHHHcCC---cccEEEcCCCC-hhhcCC
Q 030144 86 KPALLI-DPVDKTVDRDLNVIKELGL---KLVYAMNTHVH-ADHVTG 127 (182)
Q Consensus 86 ~~~ilI-D~G~~~~~~l~~~l~~~~~---~i~~IilTH~H-~DH~gg 127 (182)
++..|| ++|.+ . .+.+.+.++ +++.||+|+.. ||++||
T Consensus 21 ~~rYlFGn~gEG-t---QR~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 21 SRRYLFGNCGEG-T---QRACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CceEEeccCCcH-H---HHHHHHcCCCccccceEEECCCCcccccCC
Confidence 578899 99964 3 234444443 69999999999 999997
No 52
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=91.43 E-value=1.5 Score=36.18 Aligned_cols=70 Identities=16% Similarity=0.080 Sum_probs=52.5
Q ss_pred ccEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHc---CCcccEEEcCCCChhhcCChHHHHHhCCCCEEEecCC
Q 030144 72 STYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKEL---GLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKA 145 (182)
Q Consensus 72 ~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~---~~~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~~ 145 (182)
..-+.+|.-. +++..+..|-.. .+++.+.|++. +-+|++|+.--...-|---+..++++||++++|+.+.
T Consensus 19 ~~RMTVVrL~---~G~L~VhSPvap-T~el~~~l~~L~~~~G~VkyIVaPn~~lEH~lfl~~w~~afP~A~v~~~Pg 91 (285)
T PF14234_consen 19 PTRMTVVRLS---DGGLWVHSPVAP-TPELKAELDELEAQHGPVKYIVAPNKGLEHHLFLGPWARAFPDAKVWAPPG 91 (285)
T ss_pred cceEEEEEEC---CCCEEEECCCCC-CHHHHHHHHHHhccCCceeEEEcCCcchhHHHhHHHHHHHCCCCEEEeCCC
Confidence 3445556553 356777777643 56777777777 4489999997666668889999999999999999876
No 53
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=90.86 E-value=0.31 Score=44.68 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=40.9
Q ss_pred EeeCCCccEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHH
Q 030144 66 TFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKS 133 (182)
Q Consensus 66 ~~~~~~~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~ 133 (182)
++.|+.+..+++-.+ +-.||+|.|...-..++++++-.. +|+.|++||--.|..+|+..|.+
T Consensus 42 IfpGg~gdaALFavn-----Gf~iLv~GgserKS~fwklVrHld-rVdaVLLthpg~dNLpginsllq 103 (934)
T KOG3592|consen 42 IFPGGRGDAALFAVN-----GFNILVNGGSERKSCFWKLVRHLD-RVDAVLLTHPGADNLPGINSLLQ 103 (934)
T ss_pred ECCCCCCcceeEeec-----ceEEeecCCcccccchHHHHHHHh-hhhhhhhcccccCccccchHHHH
Confidence 344444444444333 578888888542334445554332 69999999999999999877754
No 54
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=85.08 E-value=0.31 Score=39.94 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=16.2
Q ss_pred cccEEEcCCCChhhcCCh
Q 030144 111 KLVYAMNTHVHADHVTGT 128 (182)
Q Consensus 111 ~i~~IilTH~H~DH~ggl 128 (182)
.|+.-++||.|.||+.|+
T Consensus 112 ~I~~y~ITH~HLDHIsGl 129 (356)
T COG5212 112 SINSYFITHAHLDHISGL 129 (356)
T ss_pred hhhheEeccccccchhce
Confidence 488899999999999986
No 55
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=60.64 E-value=29 Score=26.77 Aligned_cols=52 Identities=23% Similarity=0.246 Sum_probs=32.6
Q ss_pred EEcCCCCChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHhCCCCEEEecC
Q 030144 90 LIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISK 144 (182)
Q Consensus 90 lID~G~~~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~ 144 (182)
+||+|.. .-.-.+.|++.|-+=-+++.||+-+- ++.....+.-+=-+++++.
T Consensus 92 iIdtg~T-l~~aA~~Lk~~GA~~V~~~aTHgvfs--~~A~~~l~~s~Id~vvvTn 143 (184)
T PF14572_consen 92 IIDTGGT-LIKAAELLKERGAKKVYACATHGVFS--GDAPERLEESPIDEVVVTN 143 (184)
T ss_dssp EESSTHH-HHHHHHHHHHTTESEEEEEEEEE-----TTHHHHHHHSSESEEEEET
T ss_pred cccchHH-HHHHHHHHHHcCCCEEEEEEeCcccC--chHHHHHhhcCCeEEEEec
Confidence 5677753 44556778888876678999999874 5666666554334566554
No 56
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=59.39 E-value=20 Score=29.96 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=31.8
Q ss_pred EEcCCCCChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHhCCCCEEEecC
Q 030144 90 LIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISK 144 (182)
Q Consensus 90 lID~G~~~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~ 144 (182)
+||+|.. .....+.|++.|-+--+++.||+=+-- ++...|.+. +--+++++.
T Consensus 226 IidTG~T-l~~aa~~Lk~~GA~~V~~~~tHglf~~-~a~~~l~~~-~i~~iv~Td 277 (320)
T PRK02269 226 MIDTAGT-ICHAADALAEAGATEVYASCTHPVLSG-PALDNIQKS-AIEKLVVLD 277 (320)
T ss_pred ecCcHHH-HHHHHHHHHHCCCCEEEEEEECcccCc-hHHHHHHhC-CCCEEEEeC
Confidence 3457753 667788889888877789999975432 223444332 123455543
No 57
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=57.78 E-value=21 Score=27.87 Aligned_cols=58 Identities=12% Similarity=0.259 Sum_probs=38.8
Q ss_pred CCceEEEcCCCC---ChHHHHHHHHHcCC-cccEEEcCCCChhhcCChHHHHHhCCCCEEEecCCC
Q 030144 85 DKPALLIDPVDK---TVDRDLNVIKELGL-KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS 146 (182)
Q Consensus 85 ~~~~ilID~G~~---~~~~l~~~l~~~~~-~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~~~ 146 (182)
++.++|+|+-.. ......+.|++.|. +|..+.+ ..--.|+..+.+++|++++|+...+
T Consensus 124 ~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~~~~l----l~~~~gl~~l~~~~p~v~i~~~~iD 185 (209)
T PRK00129 124 ERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKVLCL----VAAPEGIKALEEAHPDVEIYTAAID 185 (209)
T ss_pred CCEEEEECCcccchHHHHHHHHHHHHcCCCEEEEEEE----ecCHHHHHHHHHHCCCcEEEEEeec
Confidence 456888887532 24556677777774 2333222 3445689999999999999987655
No 58
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=56.97 E-value=19 Score=28.09 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=38.6
Q ss_pred CCceEEEcCCCC---ChHHHHHHHHHcCC-cccEEEcCCCChhhcCChHHHHHhCCCCEEEecCCC
Q 030144 85 DKPALLIDPVDK---TVDRDLNVIKELGL-KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS 146 (182)
Q Consensus 85 ~~~~ilID~G~~---~~~~l~~~l~~~~~-~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~~~ 146 (182)
++..+|+|+... ......+.|++.|. .|..+.+ .+--.|+..+.+.||++++|....+
T Consensus 122 ~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~v~~l----l~~~~gl~~l~~~~p~v~i~~~~id 183 (207)
T TIGR01091 122 ERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKVLSI----VAAPEGIEAVEKAHPDVDIYTAAID 183 (207)
T ss_pred CCEEEEECCCccchHHHHHHHHHHHHcCCCEEEEEEE----ecCHHHHHHHHHHCCCCEEEEEEEC
Confidence 456888887643 24556677777774 3333333 3334578889999999999987654
No 59
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=56.27 E-value=27 Score=29.31 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=33.8
Q ss_pred CCceEEE----cCCCCChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHhCCCCEEEec
Q 030144 85 DKPALLI----DPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIIS 143 (182)
Q Consensus 85 ~~~~ilI----D~G~~~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~ 143 (182)
++.++|| |||.. .-.-.+.|++.|-+=.++..||+=+= |+.....+...--+++++
T Consensus 214 gk~~iiVDDiIdTgGT-i~~Aa~~Lk~~GAk~V~a~~tH~vfs--~~a~~~l~~~~i~~vivT 273 (314)
T COG0462 214 GKDVVIVDDIIDTGGT-IAKAAKALKERGAKKVYAAATHGVFS--GAALERLEASAIDEVIVT 273 (314)
T ss_pred CCEEEEEeccccccHH-HHHHHHHHHHCCCCeEEEEEEchhhC--hHHHHHHhcCCCCEEEEe
Confidence 3445554 56753 55567788888887778999999665 444444443211345544
No 60
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=55.89 E-value=22 Score=29.85 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=27.6
Q ss_pred CCceEEEc----CCCCChHHHHHHHHHcCCcccEEEcCCCChh
Q 030144 85 DKPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVHAD 123 (182)
Q Consensus 85 ~~~~ilID----~G~~~~~~l~~~l~~~~~~i~~IilTH~H~D 123 (182)
++.++||| +|.. ..+..+.|++.|-+--+++.||+-+-
T Consensus 217 Gr~viIVDDIidTG~T-l~~aa~~Lk~~GA~~V~~~~THgvfs 258 (319)
T PRK04923 217 GKTCVLVDDLVDTAGT-LCAAAAALKQRGALKVVAYITHPVLS 258 (319)
T ss_pred CCEEEEEecccCchHH-HHHHHHHHHHCCCCEEEEEEECcccC
Confidence 34556555 6643 66677888888887788999998774
No 61
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=54.78 E-value=12 Score=33.87 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=29.4
Q ss_pred CCChhhcCChHHHHHhCCCCEEEecCCCCCC-----CceEcCCCCEEEeCCeEEEEEEcCCCCC
Q 030144 119 HVHADHVTGTGLIKSKVPGVKSIISKASGSK-----ADLHVEHGDKVSFGDLFLEVCIVGGFQA 177 (182)
Q Consensus 119 H~H~DH~ggl~~l~~~~p~~~v~~~~~~~~~-----~~~~~~~g~~~~~g~~~l~vi~tPGHT~ 177 (182)
=+|.|| |=..|.+.+-+..|.+.+..+.. +...+.. |..+.|+.||||..
T Consensus 159 MGHVDH--GKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-------G~~iTFLDTPGHaA 213 (683)
T KOG1145|consen 159 MGHVDH--GKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-------GKSITFLDTPGHAA 213 (683)
T ss_pred eecccC--ChhhHHHHHhhCceehhhcCCccceeceEEEecCC-------CCEEEEecCCcHHH
Confidence 367788 54445554445667776654322 1223333 46788999999963
No 62
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=52.29 E-value=14 Score=31.07 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=27.5
Q ss_pred CCceEEEc----CCCCChHHHHHHHHHcCCcccEEEcCCCChh
Q 030144 85 DKPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVHAD 123 (182)
Q Consensus 85 ~~~~ilID----~G~~~~~~l~~~l~~~~~~i~~IilTH~H~D 123 (182)
++.++||| +|. ......+.|++.|.+.-+++.||+=+-
T Consensus 230 gr~vlIVDDIidTG~-Tl~~aa~~L~~~Ga~~V~~~~THglfs 271 (326)
T PLN02297 230 GRHVVIVDDLVQSGG-TLIECQKVLAAHGAAKVSAYVTHGVFP 271 (326)
T ss_pred CCeEEEEecccCcHH-HHHHHHHHHHHCCCcEEEEEEECcccC
Confidence 34566665 564 366778888989988889999997543
No 63
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=49.49 E-value=15 Score=30.50 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=25.8
Q ss_pred CCceEEEc----CCCCChHHHHHHHHHcCCcccEEEcCCCC
Q 030144 85 DKPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVH 121 (182)
Q Consensus 85 ~~~~ilID----~G~~~~~~l~~~l~~~~~~i~~IilTH~H 121 (182)
++.++||| +|.. .....+.|++.|.+--+++.||+=
T Consensus 211 Gr~vIIVDDIidTG~T-l~~aa~~Lk~~GA~~V~~~~tHgv 250 (301)
T PRK07199 211 GRTPVLVDDIVSTGRT-LIEAARQLRAAGAASPDCVVVHAL 250 (301)
T ss_pred CCEEEEEecccCcHHH-HHHHHHHHHHCCCcEEEEEEEeee
Confidence 45566666 5542 566678888889877789999973
No 64
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=49.43 E-value=17 Score=28.37 Aligned_cols=56 Identities=18% Similarity=0.369 Sum_probs=37.7
Q ss_pred CCceEEEcCCCC---ChHHHHHHHHHcCCc-----ccEEEcCCCChhhcCChHHHHHhCCCCEEEecCCC
Q 030144 85 DKPALLIDPVDK---TVDRDLNVIKELGLK-----LVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS 146 (182)
Q Consensus 85 ~~~~ilID~G~~---~~~~l~~~l~~~~~~-----i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~~~ 146 (182)
+..++|+||-.. ..-..++.|++.|.. +-.++.+-. |+..+.++||++++|....+
T Consensus 121 ~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~v~~ias~~------Gl~~l~~~~P~v~I~ta~iD 184 (207)
T PF14681_consen 121 NRKVILLDPMLATGGSAIAAIEILKEHGVPEENIIIVSVIASPE------GLERLLKAFPDVRIYTAAID 184 (207)
T ss_dssp TSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEEEEEEEEHH------HHHHHHHHSTTSEEEEEEEE
T ss_pred CCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEEEEEEecHH------HHHHHHHhCCCeEEEEEEEc
Confidence 467888888532 244556677777753 334444444 89999999999999987543
No 65
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=44.42 E-value=21 Score=30.04 Aligned_cols=38 Identities=26% Similarity=0.276 Sum_probs=27.1
Q ss_pred CCceEEEc----CCCCChHHHHHHHHHcCCcccEEEcCCCChh
Q 030144 85 DKPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVHAD 123 (182)
Q Consensus 85 ~~~~ilID----~G~~~~~~l~~~l~~~~~~i~~IilTH~H~D 123 (182)
++.++||| +|.. .....+.+++.|-+--+++.||+-+-
T Consensus 218 Gk~VIIVDDIi~TG~T-l~~aa~~Lk~~GA~~V~~~atHglf~ 259 (332)
T PRK00553 218 NKNCLIVDDMIDTGGT-VIAAAKLLKKQKAKKVCVMATHGLFN 259 (332)
T ss_pred CCEEEEEeccccchHH-HHHHHHHHHHcCCcEEEEEEEeeecC
Confidence 45677766 4532 55667778888888888999998553
No 66
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=44.24 E-value=9.8 Score=30.28 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=19.0
Q ss_pred CCCChhhcCChHHHHHhCCCC-EEEecC
Q 030144 118 THVHADHVTGTGLIKSKVPGV-KSIISK 144 (182)
Q Consensus 118 TH~H~DH~ggl~~l~~~~p~~-~v~~~~ 144 (182)
=|.|.||..++-.+.+.. ++ +||++.
T Consensus 41 VHSh~~Hl~al~~~a~~~-gv~~V~vH~ 67 (223)
T PF06415_consen 41 VHSHIDHLFALIKLAKKQ-GVKKVYVHA 67 (223)
T ss_dssp SS--HHHHHHHHHHHHHT-T-SEEEEEE
T ss_pred ccccHHHHHHHHHHHHHc-CCCEEEEEE
Confidence 399999999999998887 65 487764
No 67
>PLN02541 uracil phosphoribosyltransferase
Probab=41.67 E-value=36 Score=27.45 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=38.1
Q ss_pred CceEEEcCCCC---ChHHHHHHHHHcCCccc-----EEEcCCCChhhcCChHHHHHhCCCCEEEecCCC
Q 030144 86 KPALLIDPVDK---TVDRDLNVIKELGLKLV-----YAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS 146 (182)
Q Consensus 86 ~~~ilID~G~~---~~~~l~~~l~~~~~~i~-----~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~~~ 146 (182)
+.++|+|+-.. .....++.|++.|.+.. .++.+= .|+..+.+.||++++|....+
T Consensus 158 ~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~v~~ias~------~Gl~~i~~~fP~v~I~ta~ID 220 (244)
T PLN02541 158 SRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCAVAAP------PALKKLSEKFPGLHVYAGIID 220 (244)
T ss_pred CEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEEEEEEECH------HHHHHHHHHCcCCEEEEEEEC
Confidence 46999998632 34556677777776422 223332 489999999999999988765
No 68
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=38.52 E-value=71 Score=29.10 Aligned_cols=78 Identities=5% Similarity=-0.032 Sum_probs=46.4
Q ss_pred ceEEEEEeeCCC-ccEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHc---CC--------cccEEEcCCCChhhcCC
Q 030144 60 KLLFRQTFEKES-STYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKEL---GL--------KLVYAMNTHVHADHVTG 127 (182)
Q Consensus 60 ~~~i~~~~~~~~-~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~---~~--------~i~~IilTH~H~DH~gg 127 (182)
.++|..+..|-. ++++|++.- .+..|+|+|.-..++ -+-+.+. +. ...++.++|.|.||.+.
T Consensus 150 gIkf~p~~aGhVlgacMf~vei-----agv~lLyTGd~sree-Drhl~aae~P~~~~dvli~estygv~~h~~r~~re~r 223 (668)
T KOG1137|consen 150 GIKFWPYHAGHVLGACMFMVEI-----AGVRLLYTGDYSREE-DRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGR 223 (668)
T ss_pred CeEEEeeccchhhhheeeeeee-----ceEEEEeccccchhh-cccccchhCCCCCccEEEEEeeeeEEecCchHHhhhh
Confidence 455666655544 444555543 578999999632222 2222221 11 24678899999999999
Q ss_pred hHHHHHhC-CC-----CEEEec
Q 030144 128 TGLIKSKV-PG-----VKSIIS 143 (182)
Q Consensus 128 l~~l~~~~-p~-----~~v~~~ 143 (182)
+..+.... ++ .|+++.
T Consensus 224 lt~vIh~~v~rGGR~L~PvFAl 245 (668)
T KOG1137|consen 224 LTWVIHSTVPRGGRVLIPVFAL 245 (668)
T ss_pred hhhhHHhhccCCCceEeeeeec
Confidence 88886543 33 556654
No 69
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=37.66 E-value=34 Score=28.68 Aligned_cols=57 Identities=19% Similarity=0.316 Sum_probs=33.2
Q ss_pred CCceEEEc----CCCCChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHhCCCCEEEecC
Q 030144 85 DKPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISK 144 (182)
Q Consensus 85 ~~~~ilID----~G~~~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~ 144 (182)
++.++||| +|.. .....+.|++.|-+=-+++.||+-+-- ++.......+--+++++.
T Consensus 218 gk~viIVDDIidTG~T-l~~aa~~Lk~~GA~~V~~~~tHgif~~--~a~~~l~~s~i~~iv~Td 278 (323)
T PRK02458 218 GKKAILIDDILNTGKT-FAEAAKIVEREGATEIYAVASHGLFAG--GAAEVLENAPIKEILVTD 278 (323)
T ss_pred CCEEEEEcceeCcHHH-HHHHHHHHHhCCCCcEEEEEEChhcCc--hHHHHHhhCCCCEEEEEC
Confidence 34555555 5643 566677888888766678999985542 333333222123566544
No 70
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=35.47 E-value=70 Score=26.57 Aligned_cols=49 Identities=22% Similarity=0.261 Sum_probs=29.6
Q ss_pred CCceEEEcCCCC---ChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHh
Q 030144 85 DKPALLIDPVDK---TVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSK 134 (182)
Q Consensus 85 ~~~~ilID~G~~---~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~ 134 (182)
++.++|||.-.. ......+.|++.|-+--.++.||+=+.. ++...|.+.
T Consensus 201 gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~tH~v~~~-~a~~~l~~~ 252 (304)
T PRK03092 201 GRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGVLSG-PAAERLKNC 252 (304)
T ss_pred CCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEEEcccCCh-HHHHHHHHC
Confidence 456777776532 2555677788888765667779985432 233445443
No 71
>PLN02335 anthranilate synthase
Probab=34.74 E-value=64 Score=25.34 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=22.9
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHcCCcc
Q 030144 84 PDKPALLIDPVDKTVDRDLNVIKELGLKL 112 (182)
Q Consensus 84 ~~~~~ilID~G~~~~~~l~~~l~~~~~~i 112 (182)
|.+..++||-++.....+.++|++.|..+
T Consensus 17 ~~~~ilviD~~dsft~~i~~~L~~~g~~~ 45 (222)
T PLN02335 17 QNGPIIVIDNYDSFTYNLCQYMGELGCHF 45 (222)
T ss_pred ccCcEEEEECCCCHHHHHHHHHHHCCCcE
Confidence 36789999998777788899998887543
No 72
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=34.56 E-value=2.5e+02 Score=22.78 Aligned_cols=81 Identities=11% Similarity=0.092 Sum_probs=41.6
Q ss_pred ceEEEcCCCC----------ChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHhC--CCCEEEecCCCCCCCceEc
Q 030144 87 PALLIDPVDK----------TVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKV--PGVKSIISKASGSKADLHV 154 (182)
Q Consensus 87 ~~ilID~G~~----------~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~--p~~~v~~~~~~~~~~~~~~ 154 (182)
..+++|+|+. ..+...+.++..| .|++.+-...+|. |...|.+.. .+.++++.......-...+
T Consensus 43 ~~l~ld~GD~~~Gs~~~~~~~g~~~~~~~n~~g--~Da~~~GNHEfD~--G~~~L~~~~~~~~fp~l~aNv~~~~g~~~~ 118 (285)
T cd07405 43 YVLLLSGGDINTGVPESDLQDAEPDFRGMNLVG--YDAMAVGNHEFDN--PLEVLRQQMKWANFPLLSANIYQESGERLF 118 (285)
T ss_pred CEEEEeCCCcCCCchhHHhcCcchHHHHHHhhC--CcEEeeccccccc--CHHHHHHHHhhCCCCEEEEEEEecCCCCcc
Confidence 4677777742 1233455666666 6677777777886 777776532 1344444321100000112
Q ss_pred CCCCEEEeCCeEEEEEE
Q 030144 155 EHGDKVSFGDLFLEVCI 171 (182)
Q Consensus 155 ~~g~~~~~g~~~l~vi~ 171 (182)
++-..++.+|.++-++-
T Consensus 119 ~p~~i~~~~G~kIgviG 135 (285)
T cd07405 119 KPYALFDLGGLKIAVIG 135 (285)
T ss_pred CCeEEEEECCEEEEEEE
Confidence 22233456777766664
No 73
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=33.81 E-value=72 Score=28.08 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=26.4
Q ss_pred CCceEEEc----CCCCChHHHHHHHHHcCCcccEEEcCCCChh
Q 030144 85 DKPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVHAD 123 (182)
Q Consensus 85 ~~~~ilID----~G~~~~~~l~~~l~~~~~~i~~IilTH~H~D 123 (182)
++.++||| +|.. .....+.|++.|-.--+++.||+-+.
T Consensus 335 Gk~vIIVDDIIdTG~T-l~~aa~~Lk~~GA~~V~~~~THglfs 376 (439)
T PTZ00145 335 DSDVIIVDDMIDTSGT-LCEAAKQLKKHGARRVFAFATHGLFS 376 (439)
T ss_pred CCEEEEEcceeCcHHH-HHHHHHHHHHcCCCEEEEEEEcccCC
Confidence 34556555 5543 55667778888876668999999776
No 74
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=32.81 E-value=83 Score=21.59 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=23.2
Q ss_pred CCChhhc-CChHHHHHhCCCCEEEecCCCCCCCceEcCCCCEEEe
Q 030144 119 HVHADHV-TGTGLIKSKVPGVKSIISKASGSKADLHVEHGDKVSF 162 (182)
Q Consensus 119 H~H~DH~-ggl~~l~~~~p~~~v~~~~~~~~~~~~~~~~g~~~~~ 162 (182)
|.|.++. ...+.+++..+...+++++.+.. ..-+++|+.+.+
T Consensus 15 ~~~s~~~~~~~~~l~~~~~~~~v~in~~dA~--~lgi~~Gd~V~v 57 (122)
T cd02791 15 QWHTMTRTGRVPRLNAHVPEPYVEIHPEDAA--RLGLKEGDLVRV 57 (122)
T ss_pred hhccCCccCChHHHHhhCCCCEEEECHHHHH--HcCCCCCCEEEE
Confidence 4455553 33566666665566788776432 223456665554
No 75
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=32.63 E-value=1e+02 Score=25.35 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=15.0
Q ss_pred cccEEEcCCCChhhcCC
Q 030144 111 KLVYAMNTHVHADHVTG 127 (182)
Q Consensus 111 ~i~~IilTH~H~DH~gg 127 (182)
+++.++.+|.|+||...
T Consensus 132 ~~d~~~vsh~h~dhld~ 148 (343)
T KOG3798|consen 132 DLDFAVVSHDHYDHLDA 148 (343)
T ss_pred CCceeccccccccccch
Confidence 59999999999999753
No 76
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=31.38 E-value=1.2e+02 Score=23.07 Aligned_cols=39 Identities=13% Similarity=0.017 Sum_probs=27.5
Q ss_pred HHHHHHHcCCcccEEEcCCCChhhcCChHHHHHhCCCCEEEec
Q 030144 101 DLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIIS 143 (182)
Q Consensus 101 l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~ 143 (182)
....|++.|..+|.|+--++ .|..-.|++.||++++++-
T Consensus 56 a~~~L~~~Gf~PDvI~~H~G----WGe~Lflkdv~P~a~li~Y 94 (171)
T PF12000_consen 56 AARQLRAQGFVPDVIIAHPG----WGETLFLKDVFPDAPLIGY 94 (171)
T ss_pred HHHHHHHcCCCCCEEEEcCC----cchhhhHHHhCCCCcEEEE
Confidence 34556677888886665444 4556777888999988764
No 77
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=31.11 E-value=67 Score=26.71 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=33.7
Q ss_pred CCceEEEcCCCC---ChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHhCCCCEEEec
Q 030144 85 DKPALLIDPVDK---TVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIIS 143 (182)
Q Consensus 85 ~~~~ilID~G~~---~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~ 143 (182)
++.++|||-... ......+.+++.|.+--.++.||.-+.. ++...+.+.. --++++.
T Consensus 208 g~~vliVDDii~TG~T~~~a~~~l~~~Ga~~v~~~~tH~i~~~-~a~~~l~~~~-~~~iv~t 267 (309)
T PRK01259 208 GRDCILVDDMIDTAGTLCKAAEALKERGAKSVYAYATHPVLSG-GAIERIENSV-IDELVVT 267 (309)
T ss_pred CCEEEEEecccCcHHHHHHHHHHHHccCCCEEEEEEEeeeCCh-HHHHHHhcCC-CCEEEEe
Confidence 456777775532 2455667777888777788999986633 2344444432 2344443
No 78
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=28.46 E-value=76 Score=24.15 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=18.7
Q ss_pred EEEcCCCCChHHHHHHHHHcCC
Q 030144 89 LLIDPVDKTVDRDLNVIKELGL 110 (182)
Q Consensus 89 ilID~G~~~~~~l~~~l~~~~~ 110 (182)
++||.|..+...+.+.+++.|.
T Consensus 2 ~i~d~g~~~~~~~~~~l~~~g~ 23 (198)
T cd01748 2 AIIDYGMGNLRSVANALERLGA 23 (198)
T ss_pred EEEeCCCChHHHHHHHHHHCCC
Confidence 6899998888888999988764
No 79
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=28.02 E-value=53 Score=26.95 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=33.4
Q ss_pred CCceEEEcCCCC---ChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHhCCCCEEEec
Q 030144 85 DKPALLIDPVDK---TVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIIS 143 (182)
Q Consensus 85 ~~~~ilID~G~~---~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~ 143 (182)
++.++|||-... ......+.+++.|-+--.++.||.=+.. ++...+.+.- --.+++.
T Consensus 204 Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~~H~i~~~-~a~~~l~~~~-i~~i~~t 263 (285)
T PRK00934 204 GKDVLIVDDIISTGGTMATAIKILKEQGAKKVYVACVHPVLVG-DAILKLYNAG-VDEIIVT 263 (285)
T ss_pred CCEEEEEcCccccHHHHHHHHHHHHHCCCCEEEEEEEeeccCc-HHHHHHHhCC-CCEEEEc
Confidence 456777775432 2556677888888777788888863322 2334444431 2345544
No 80
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=27.66 E-value=1.2e+02 Score=20.64 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=20.4
Q ss_pred CChHHHHHhCCCCEEEecCCCCCCCceEcCCCCEEEe
Q 030144 126 TGTGLIKSKVPGVKSIISKASGSKADLHVEHGDKVSF 162 (182)
Q Consensus 126 ggl~~l~~~~p~~~v~~~~~~~~~~~~~~~~g~~~~~ 162 (182)
...+.+.+..+...+++++.+.. ..-+++|+.+.+
T Consensus 23 ~~~~~l~~~~~~~~v~inp~dA~--~lgi~~Gd~V~v 57 (120)
T cd00508 23 RRSPRLAALAPEPFVEIHPEDAA--RLGIKDGDLVRV 57 (120)
T ss_pred cccHHHHhhCCCCEEEECHHHHH--HcCCCCCCEEEE
Confidence 34566666655567888876532 233456666654
No 81
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=27.60 E-value=1.1e+02 Score=26.05 Aligned_cols=46 Identities=26% Similarity=0.374 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCcccEEEcCCCChhhcCC-hHHHHHhCCCCEEEecC
Q 030144 99 DRDLNVIKELGLKLVYAMNTHVHADHVTG-TGLIKSKVPGVKSIISK 144 (182)
Q Consensus 99 ~~l~~~l~~~~~~i~~IilTH~H~DH~gg-l~~l~~~~p~~~v~~~~ 144 (182)
.+..+.|.+.+.++-.|=.+|.|..|+.. +..+++.||+++|++..
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGN 156 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGN 156 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEE
T ss_pred HHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecc
Confidence 44455566667444444459999999976 57778889889999875
No 82
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=27.10 E-value=59 Score=18.47 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=19.9
Q ss_pred ChHHHHHHHHHcCCcccEEEcCCCChh
Q 030144 97 TVDRDLNVIKELGLKLVYAMNTHVHAD 123 (182)
Q Consensus 97 ~~~~l~~~l~~~~~~i~~IilTH~H~D 123 (182)
+.+++.++++..+ .+.+++-|+.+|
T Consensus 19 d~~~L~~~i~~~~--p~~vilVHGe~~ 43 (43)
T PF07521_consen 19 DREELLEFIEQLN--PRKVILVHGEPR 43 (43)
T ss_dssp BHHHHHHHHHHHC--SSEEEEESSEHH
T ss_pred CHHHHHHHHHhcC--CCEEEEecCCCC
Confidence 4778899998874 599999998654
No 83
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=26.42 E-value=1.2e+02 Score=27.00 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=36.4
Q ss_pred hHHHHHHHHHcCCcccEEEcCCCChhhcCC-hHHHHHhCCCCEEEecC
Q 030144 98 VDRDLNVIKELGLKLVYAMNTHVHADHVTG-TGLIKSKVPGVKSIISK 144 (182)
Q Consensus 98 ~~~l~~~l~~~~~~i~~IilTH~H~DH~gg-l~~l~~~~p~~~v~~~~ 144 (182)
..+..+.|.+.|.++-.|=.||.|...+.. +..+++.||+++|++..
T Consensus 226 ~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~ 273 (475)
T TIGR01303 226 VGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGN 273 (475)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEec
Confidence 455666666778777777789999988876 67777888999999863
No 84
>PRK05670 anthranilate synthase component II; Provisional
Probab=26.16 E-value=1e+02 Score=23.33 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=18.7
Q ss_pred eEEEcCCCCChHHHHHHHHHcCCc
Q 030144 88 ALLIDPVDKTVDRDLNVIKELGLK 111 (182)
Q Consensus 88 ~ilID~G~~~~~~l~~~l~~~~~~ 111 (182)
.++||.++.....+.+++++.|..
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~ 25 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAE 25 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCc
Confidence 578899987778888888877643
No 85
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=25.71 E-value=58 Score=26.80 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=18.7
Q ss_pred HHHHHHHHHcCCcccEEEcCC------CChhhcCChHHHH
Q 030144 99 DRDLNVIKELGLKLVYAMNTH------VHADHVTGTGLIK 132 (182)
Q Consensus 99 ~~l~~~l~~~~~~i~~IilTH------~H~DH~ggl~~l~ 132 (182)
+.+.+.|++. +++ |++|| .|.||+.......
T Consensus 111 ~~L~~iIr~~--~Pd-vVvT~d~~GgygHpDH~~v~~a~~ 147 (283)
T TIGR03446 111 EPLVRVIREF--RPH-VITTYDENGGYPHPDHIMCHEVSV 147 (283)
T ss_pred HHHHHHHHHc--CCE-EEEecCCCCCCCChhHHHHHHHHH
Confidence 3445555543 354 77888 5999986544433
No 86
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=25.68 E-value=72 Score=20.24 Aligned_cols=15 Identities=40% Similarity=0.674 Sum_probs=10.5
Q ss_pred cCCCCEEEeCCeEEE
Q 030144 154 VEHGDKVSFGDLFLE 168 (182)
Q Consensus 154 ~~~g~~~~~g~~~l~ 168 (182)
+++||++.+|+.+++
T Consensus 54 ~~~GD~V~Ig~~eFe 68 (69)
T PF09269_consen 54 AKEGDTVRIGDYEFE 68 (69)
T ss_dssp --TT-EEEETTEEEE
T ss_pred CCCCCEEEEcCEEEE
Confidence 568999999998876
No 87
>COG1678 Putative transcriptional regulator [Transcription]
Probab=25.38 E-value=24 Score=27.44 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=28.4
Q ss_pred CCccEEEEEEecCCCCCceEEEcCCCCChHHHHHHHHHcCCcc
Q 030144 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKL 112 (182)
Q Consensus 70 ~~~~n~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i 112 (182)
....|.||+.. .+.-+|+|.+. .++..++++..|+++
T Consensus 148 Ei~~n~WL~~p----A~~~~lF~~~~--edrw~~al~~lGi~~ 184 (194)
T COG1678 148 EIEDNDWLTVP----ADPEILFDTPP--EDRWARALRRLGIDL 184 (194)
T ss_pred HHhhCCEEEec----CCHHHhcCCCH--HHHHHHHHHHcCCCH
Confidence 45678999987 46789999985 567778888888543
No 88
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=25.34 E-value=1.2e+02 Score=24.78 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=26.1
Q ss_pred CCceEEEcCCC--------CChHHHHHHHHHcCCcccEEEcCCCC
Q 030144 85 DKPALLIDPVD--------KTVDRDLNVIKELGLKLVYAMNTHVH 121 (182)
Q Consensus 85 ~~~~ilID~G~--------~~~~~l~~~l~~~~~~i~~IilTH~H 121 (182)
.+..+|||+.+ .....+++.+++.+.++.+|=++-.|
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ 140 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSH 140 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeece
Confidence 46789999864 23677889999988876655544443
No 89
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=24.70 E-value=76 Score=26.31 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=35.0
Q ss_pred CCceEEEcCCCCC---hHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHhCCCCEEEec
Q 030144 85 DKPALLIDPVDKT---VDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIIS 143 (182)
Q Consensus 85 ~~~~ilID~G~~~---~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~ 143 (182)
++.++|||..... .....+.+++.|.+--.++.||.-+-- .++..+.+.. --.+++.
T Consensus 202 g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~tH~v~~~-~a~~~l~~~~-~~~iv~t 261 (302)
T PLN02369 202 GKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHAVFSP-PAIERLSSGL-FQEVIVT 261 (302)
T ss_pred CCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEEEeeeeCH-HHHHHHHhCC-CCEEEEe
Confidence 4668888876322 445566777888777789999986543 2344454432 2345544
No 90
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=24.00 E-value=80 Score=23.62 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=20.8
Q ss_pred EEEcCCCCChHHHHHHHHHcCCcccEEE
Q 030144 89 LLIDPVDKTVDRDLNVIKELGLKLVYAM 116 (182)
Q Consensus 89 ilID~G~~~~~~l~~~l~~~~~~i~~Ii 116 (182)
+|||.|......+.+.+++.+.+++.+-
T Consensus 1 lviD~~~~~~~~l~~~l~~~~~~~~v~~ 28 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRELGIDVEVVR 28 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHTTEEEEEEE
T ss_pred CEEeCCHHHHHHHHHHHHHCCCeEEEEE
Confidence 6899997778888888888875444433
No 91
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=23.82 E-value=75 Score=29.17 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=24.5
Q ss_pred eEEEcCCCCChHHHHHHHHHc-CCcccEEEcCCCChhhcC
Q 030144 88 ALLIDPVDKTVDRDLNVIKEL-GLKLVYAMNTHVHADHVT 126 (182)
Q Consensus 88 ~ilID~G~~~~~~l~~~l~~~-~~~i~~IilTH~H~DH~g 126 (182)
.+|+|.|.. .+. ..++++. ...++.|++-|.|+|-.-
T Consensus 421 ~VlvDnGsT-eED-ipA~~~~k~Ygi~ivVVDHH~Pde~v 458 (715)
T COG1107 421 LVLVDNGST-EED-IPAIKQLKAYGIDIVVVDHHYPDEAV 458 (715)
T ss_pred EEEEcCCCc-ccc-cHHHHHHHhcCCCEEEEcCCCCcchh
Confidence 588999963 222 2233332 345999999999999765
No 92
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=23.75 E-value=1.5e+02 Score=23.01 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=20.5
Q ss_pred ceEEEcCCCCChHHHHHHHHHcCC
Q 030144 87 PALLIDPVDKTVDRDLNVIKELGL 110 (182)
Q Consensus 87 ~~ilID~G~~~~~~l~~~l~~~~~ 110 (182)
+..+||-|..+...+.+++++.|.
T Consensus 3 ~~~iid~g~gn~~s~~~al~~~g~ 26 (209)
T PRK13146 3 TVAIIDYGSGNLRSAAKALERAGA 26 (209)
T ss_pred eEEEEECCCChHHHHHHHHHHcCC
Confidence 468999998888889999998875
No 93
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=22.73 E-value=1.4e+02 Score=26.49 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCcccEEEcCCCChhhcCC-hHHHHHhCCCCEEEecC
Q 030144 99 DRDLNVIKELGLKLVYAMNTHVHADHVTG-TGLIKSKVPGVKSIISK 144 (182)
Q Consensus 99 ~~l~~~l~~~~~~i~~IilTH~H~DH~gg-l~~l~~~~p~~~v~~~~ 144 (182)
.+..+.+.+.|.++-.|=.||.|...+.. +..++++||++.++++.
T Consensus 229 ~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agn 275 (479)
T PRK07807 229 AAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGN 275 (479)
T ss_pred HHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeec
Confidence 34555566667667667789999666655 67788889999999864
No 94
>cd02792 MopB_CT_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. This CD (MopB_CT_Formate-Dh-Na-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=22.47 E-value=1.7e+02 Score=19.96 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=19.7
Q ss_pred ChHHHHHhCCCCEEEecCCCCCCCceEcCCCCEEEe
Q 030144 127 GTGLIKSKVPGVKSIISKASGSKADLHVEHGDKVSF 162 (182)
Q Consensus 127 gl~~l~~~~p~~~v~~~~~~~~~~~~~~~~g~~~~~ 162 (182)
..+.+.+..+...+++++.+.. ..-+++||.+.+
T Consensus 24 ~~~~l~~~~~~~~v~i~p~dA~--~lgi~~Gd~V~v 57 (122)
T cd02792 24 NSPYLAELQPEMFVEISPELAA--ERGIKNGDMVWV 57 (122)
T ss_pred CCHHHHhhCCCcEEEECHHHHH--HcCCCCCCEEEE
Confidence 4566776666666888776532 223456665554
No 95
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=22.32 E-value=99 Score=23.27 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=17.2
Q ss_pred EEEcCCCCChHHHHHHHHHcCC
Q 030144 89 LLIDPVDKTVDRDLNVIKELGL 110 (182)
Q Consensus 89 ilID~G~~~~~~l~~~l~~~~~ 110 (182)
++||.|......+.+.+++.|.
T Consensus 2 ~iiD~g~~~~~~l~~~l~~~g~ 23 (188)
T TIGR00888 2 LVLDFGSQYTQLIARRLRELGV 23 (188)
T ss_pred EEEECCchHHHHHHHHHHHcCC
Confidence 6899998777777788877764
No 96
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=22.09 E-value=1.5e+02 Score=24.14 Aligned_cols=38 Identities=24% Similarity=0.409 Sum_probs=25.6
Q ss_pred CceEEEcCCCCChHHHHHHHHHcCCcccEEEcCCCChhhc
Q 030144 86 KPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHV 125 (182)
Q Consensus 86 ~~~ilID~G~~~~~~l~~~l~~~~~~i~~IilTH~H~DH~ 125 (182)
+-.+++||... ..-+...++.|+++-+++-|-..+|.+
T Consensus 158 d~l~ViDp~~e--~iAv~EA~klgIPVvAlvDTn~dpd~V 195 (252)
T COG0052 158 DVLFVIDPRKE--KIAVKEANKLGIPVVALVDTNCDPDGV 195 (252)
T ss_pred CEEEEeCCcHh--HHHHHHHHHcCCCEEEEecCCCCCccC
Confidence 35678888742 222333455688888888888888876
No 97
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=22.05 E-value=86 Score=19.92 Aligned_cols=16 Identities=38% Similarity=0.644 Sum_probs=13.0
Q ss_pred EcCCCCEEEeCCeEEE
Q 030144 153 HVEHGDKVSFGDLFLE 168 (182)
Q Consensus 153 ~~~~g~~~~~g~~~l~ 168 (182)
-+++||++.+|+..++
T Consensus 53 G~~~GD~V~Ig~~eFe 68 (69)
T TIGR03595 53 GAKDGDTVRIGDFEFE 68 (69)
T ss_pred CCCCCCEEEEccEEEe
Confidence 3578999999998775
No 98
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=22.00 E-value=49 Score=30.00 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=22.4
Q ss_pred CCCChhhcCChHHHHHhCCCC-EEEecC
Q 030144 118 THVHADHVTGTGLIKSKVPGV-KSIISK 144 (182)
Q Consensus 118 TH~H~DH~ggl~~l~~~~p~~-~v~~~~ 144 (182)
=|.|.||..++-.+.+.. ++ +||++.
T Consensus 140 VHSh~~Hl~al~~~a~~~-gv~~v~vH~ 166 (558)
T PLN02538 140 VHSRLDQLQLLLKGAAER-GAKRIRVHV 166 (558)
T ss_pred cccHHHHHHHHHHHHHHc-CCCeEEEEE
Confidence 499999999999998877 76 888875
No 99
>PRK09875 putative hydrolase; Provisional
Probab=21.97 E-value=1.5e+02 Score=24.57 Aligned_cols=46 Identities=11% Similarity=0.018 Sum_probs=30.7
Q ss_pred CceEEEcCCCC-ChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHH
Q 030144 86 KPALLIDPVDK-TVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKS 133 (182)
Q Consensus 86 ~~~ilID~G~~-~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~ 133 (182)
+-.|.+-++.. ...++++.+++.|.+++.|+++|.. -.....++.+
T Consensus 152 G~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d--~~~d~~~~~~ 198 (292)
T PRK09875 152 GRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCD--LKDNLDNILK 198 (292)
T ss_pred CCcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCC--CCCCHHHHHH
Confidence 44566666532 3456688889999999999999984 2344444444
No 100
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=21.92 E-value=49 Score=29.64 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=22.1
Q ss_pred CCCChhhcCChHHHHHhCCCC-EEEecC
Q 030144 118 THVHADHVTGTGLIKSKVPGV-KSIISK 144 (182)
Q Consensus 118 TH~H~DH~ggl~~l~~~~p~~-~v~~~~ 144 (182)
=|.|.||..++-.+.+.. ++ +||++.
T Consensus 119 VHsh~~hl~~l~~~a~~~-g~~~v~vH~ 145 (501)
T TIGR01307 119 VHSHIDHLIALIELAAER-GIEKVVLHA 145 (501)
T ss_pred CcchHHHHHHHHHHHHHc-CCCeEEEEE
Confidence 499999999999998876 77 788875
No 101
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=21.90 E-value=1.2e+02 Score=26.09 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=33.7
Q ss_pred CCceEEEcCCCC---ChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHhC
Q 030144 85 DKPALLIDPVDK---TVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKV 135 (182)
Q Consensus 85 ~~~~ilID~G~~---~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~ 135 (182)
++.++|||.-.. ......+.|++.|-+--+++.||+=+- .|+..|.+.+
T Consensus 264 gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~--~a~~~l~~~~ 315 (382)
T PRK06827 264 GKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFFT--NGLEKFDKAY 315 (382)
T ss_pred CCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh--HHHHHHHhhc
Confidence 456777775422 245566777888877778899998655 6777776654
No 102
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=21.76 E-value=1.6e+02 Score=25.17 Aligned_cols=58 Identities=5% Similarity=0.108 Sum_probs=36.4
Q ss_pred ceEEEcCCCC--ChHHHHHHHHH-cCCcccEEEcCCCChhhcCC-hHHHHHhCCCCEEEecC
Q 030144 87 PALLIDPVDK--TVDRDLNVIKE-LGLKLVYAMNTHVHADHVTG-TGLIKSKVPGVKSIISK 144 (182)
Q Consensus 87 ~~ilID~G~~--~~~~l~~~l~~-~~~~i~~IilTH~H~DH~gg-l~~l~~~~p~~~v~~~~ 144 (182)
..++|=.|.. ..+.+.+.++. .+.+.-.|=..|+|.+++-. +..+++.||+..|+++.
T Consensus 97 ~~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGN 158 (346)
T PRK05096 97 KHVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGN 158 (346)
T ss_pred ceEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEec
Confidence 3455544532 23333333332 24444445579999999876 67888889999998875
No 103
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=21.63 E-value=1.3e+02 Score=25.00 Aligned_cols=47 Identities=11% Similarity=0.093 Sum_probs=31.6
Q ss_pred CceEEEcCCCC--ChHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHh
Q 030144 86 KPALLIDPVDK--TVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSK 134 (182)
Q Consensus 86 ~~~ilID~G~~--~~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~ 134 (182)
+-.|.+-++.. ...+.++.+++.|.+++.|++.|. |-.....++.+.
T Consensus 155 G~pI~~H~~~g~~~~~e~~~il~e~Gv~~~rvvigH~--D~~~D~~y~~~l 203 (308)
T PF02126_consen 155 GAPISTHTGRGTRMGLEQLDILEEEGVDPSRVVIGHM--DRNPDLDYHREL 203 (308)
T ss_dssp T-EEEEEESTTGTCHHHHHHHHHHTT--GGGEEETSG--GGST-HHHHHHH
T ss_pred CCeEEEcCCCCCcCHHHHHHHHHHcCCChhHeEEeCC--CCCCCHHHHHHH
Confidence 45677777643 357889999999999999999876 666666666543
No 104
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=21.57 E-value=1.3e+02 Score=24.93 Aligned_cols=57 Identities=21% Similarity=0.245 Sum_probs=33.4
Q ss_pred CCceEEEcCCCCC---hHHHHHHHHHcCCcccEEEcCCCChhhcCChHHHHHhCCCCEEEec
Q 030144 85 DKPALLIDPVDKT---VDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIIS 143 (182)
Q Consensus 85 ~~~~ilID~G~~~---~~~l~~~l~~~~~~i~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~ 143 (182)
++.++|||..... .....+.+++.|.+--.++.||..+.- .++..+.+.. --.+++.
T Consensus 210 g~~vliVDDii~tG~Tl~~a~~~l~~~ga~~v~~~~th~v~~~-~a~~~l~~~~-~~~iv~t 269 (308)
T TIGR01251 210 GKDVVIVDDIIDTGGTIAKAAEILKSAGAKRVIAAATHGVFSG-PAIERIANAG-VEEVIVT 269 (308)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhcCCCEEEEEEEeeecCc-HHHHHHHhCC-CCEEEEe
Confidence 4578888876432 444566777777766678888864432 2345555542 2344443
No 105
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=21.28 E-value=2.3e+02 Score=22.35 Aligned_cols=56 Identities=14% Similarity=0.331 Sum_probs=37.2
Q ss_pred CCceEEEcCCCC---ChHHHHHHHHHcC-C-cc--cEEEcCCCChhhcCChHHHHHhCCCCEEEecCCC
Q 030144 85 DKPALLIDPVDK---TVDRDLNVIKELG-L-KL--VYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS 146 (182)
Q Consensus 85 ~~~~ilID~G~~---~~~~l~~~l~~~~-~-~i--~~IilTH~H~DH~ggl~~l~~~~p~~~v~~~~~~ 146 (182)
++..+++||-.. ..-...+.|++.| . +| -.++-+= -|+..+.+.+|++++|....+
T Consensus 124 ~~~viv~DPMLATG~s~i~ai~~L~~~G~~~~I~~v~~vAap------eGi~~v~~~~p~v~I~ta~iD 186 (210)
T COG0035 124 ERTVIVLDPMLATGGSAIAAIDLLKKRGGPKNIKVVSLVAAP------EGIKAVEKAHPDVEIYTAAID 186 (210)
T ss_pred CCeEEEECchhhccHhHHHHHHHHHHhCCCceEEEEEEEecH------HHHHHHHHhCCCCeEEEEEec
Confidence 578999998632 3445567777774 1 12 2233332 388889999999999987654
No 106
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=21.02 E-value=54 Score=24.54 Aligned_cols=6 Identities=0% Similarity=-0.330 Sum_probs=2.4
Q ss_pred ccEEEc
Q 030144 112 LVYAMN 117 (182)
Q Consensus 112 i~~Iil 117 (182)
+|.|++
T Consensus 80 PDLilI 85 (155)
T PF08459_consen 80 PDLILI 85 (155)
T ss_dssp -SEEEE
T ss_pred CCEEEE
Confidence 454444
No 107
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=20.66 E-value=88 Score=28.11 Aligned_cols=13 Identities=8% Similarity=-0.171 Sum_probs=10.9
Q ss_pred CeEEEEEEcCCCC
Q 030144 164 DLFLEVCIVGGFQ 176 (182)
Q Consensus 164 ~~~l~vi~tPGHT 176 (182)
...+.|+-||||.
T Consensus 54 ~~~itFiDTPGHe 66 (509)
T COG0532 54 IPGITFIDTPGHE 66 (509)
T ss_pred CceEEEEcCCcHH
Confidence 4578999999995
No 108
>PRK05434 phosphoglyceromutase; Provisional
Probab=20.56 E-value=55 Score=29.37 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.1
Q ss_pred CCCChhhcCChHHHHHhCCCC-EEEecC
Q 030144 118 THVHADHVTGTGLIKSKVPGV-KSIISK 144 (182)
Q Consensus 118 TH~H~DH~ggl~~l~~~~p~~-~v~~~~ 144 (182)
=|.|.||..++-.+.+.. ++ +|+++.
T Consensus 123 VHsh~~hl~~l~~~a~~~-g~~~v~vH~ 149 (507)
T PRK05434 123 VHSHIDHLFALLELAKEE-GVKKVYVHA 149 (507)
T ss_pred cccHHHHHHHHHHHHHHc-CCCEEEEEE
Confidence 499999999999988876 76 888875
Done!