BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030146
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 34/171 (19%)
Query: 41 EGDALYALRRSLSDPDNVLQSWDPTLVNPC--TWFHITCNQDN---RVTRLDL------- 88
+ AL +++ L +P L SW PT + C TW + C+ D RV LDL
Sbjct: 7 DKQALLQIKKDLGNP-TTLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64
Query: 89 --------------------GNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNL 128
G +NL G + P + KL L YL + N+ G IP L +
Sbjct: 65 PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 129 KSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSL 179
K+L++LD N +SG +PPS++ L +LV + + NR++G IP S L
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 78 NQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLI-SLDL 136
+Q + LD + LSG L P + L +L + N I G IP G+ L S+ +
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 137 YNNNISGKIPPSLAKLKSLVFLRLNDNRLTG 167
N ++GKIPP+ A L +L F+ L+ N L G
Sbjct: 182 SRNRLTGKIPPTFANL-NLAFVDLSRNMLEG 211
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
+DL + L G G ++ Q + L KN++ + ++G K+L LDL NN I G +
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTL 260
Query: 146 PPSLAKLKSLVFLRLNDNRLTGQIPR 171
P L +LK L L ++ N L G+IP+
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 59/96 (61%)
Query: 76 TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLD 135
T + + + LD+ + LSG + E+G + +L L L N+I G+IP E+G+L+ L LD
Sbjct: 624 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 683
Query: 136 LYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPR 171
L +N + G+IP +++ L L + L++N L+G IP
Sbjct: 684 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 86 LDLGNSNLSGRLVPELGK--LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
LDL ++N SG ++P L + LQ L L N G IP L N L+SL L N +SG
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 429
Query: 144 KIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVV 182
IP SL L L L+L N L G+IP+EL+ + +L+ +
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 468
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 64 PTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV 123
P L N C N N + L L N+ +G++ P L L L L N + GTIP
Sbjct: 380 PILPNLCQ------NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Query: 124 ELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSL 179
LG+L L L L+ N + G+IP L +K+L L L+ N LTG+IP L ++L
Sbjct: 434 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 64/101 (63%)
Query: 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
+ L L + LSG + LG L L+ L+L+ N ++G IP EL +K+L +L L N++
Sbjct: 416 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 475
Query: 142 SGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVV 182
+G+IP L+ +L ++ L++NRLTG+IP+ + + +L ++
Sbjct: 476 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%)
Query: 95 GRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKS 154
G P + +L++ N + G IP E+G++ L L+L +N+ISG IP + L+
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 155 LVFLRLNDNRLTGQIPRELVGISSLKVV 182
L L L+ N+L G+IP+ + ++ L +
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTEI 706
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 92 NLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAK 151
+L+G + L +L ++ L N + G IP +G L++L L L NN+ SG IP L
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 152 LKSLVFLRLNDNRLTGQIPRELV 174
+SL++L LN N G IP +
Sbjct: 534 CRSLIWLDLNTNLFNGTIPAAMF 556
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%)
Query: 93 LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKL 152
L G + EL ++ L+ L L N++ G IP L N +L + L NN ++G+IP + +L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 153 KSLVFLRLNDNRLTGQIPRELVGISSL 179
++L L+L++N +G IP EL SL
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSL 537
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
+ L N+ L+G + +G+LE+L L+L N+ G IP ELG+ +SLI LDL N +G I
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 146 PPSLAK 151
P ++ K
Sbjct: 552 PAAMFK 557
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
LD+ ++N S +P LG LQ+L++ N + G + L L++ +N G I
Sbjct: 202 LDVSSNNFSTG-IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 260
Query: 146 PPSLAKLKSLVFLRLNDNRLTGQIPRELVG 175
PP LKSL +L L +N+ TG+IP L G
Sbjct: 261 PP--LPLKSLQYLSLAENKFTGEIPDFLSG 288
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 55/117 (47%), Gaps = 28/117 (23%)
Query: 92 NLSGRL-VPELGKLEHLQYLELYKNNIQGTIPVELGNLK-SLISLDLYNNNIS------- 142
N SG L + L K+ L+ L+L N G +P L NL SL++LDL +NN S
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 385
Query: 143 -------------------GKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLK 180
GKIPP+L+ LV L L+ N L+G IP L +S L+
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 98 VPELGKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156
+P L L+ LQYL L +N G IP L G +L LDL N+ G +PP L
Sbjct: 260 IPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 318
Query: 157 FLRLNDNRLTGQIPRE-LVGISSLKVV 182
L L+ N +G++P + L+ + LKV+
Sbjct: 319 SLALSSNNFSGELPMDTLLKMRGLKVL 345
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNN 139
+ +T LDL ++ G + P G L+ L L NN G +P++ L ++ L LDL N
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 140 NISGKIPPSLAKLK-SLVFLRLNDNRLTGQI 169
SG++P SL L SL+ L L+ N +G I
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPI 381
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 14/137 (10%)
Query: 55 PD-NVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLS---GRLVPELGKLEHLQYL 110
PD N+L W NPCT+ +TC +D++VT +DL + L+ + L L L+ L
Sbjct: 22 PDKNLLPDWSSN-KNPCTFDGVTC-RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 79
Query: 111 ELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP--PSLAKLKSLVFLRLNDNRLTGQ 168
L ++I G++ SL SLDL N++SG + SL L FL ++ N L
Sbjct: 80 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--D 136
Query: 169 IPRELVG---ISSLKVV 182
P ++ G ++SL+V+
Sbjct: 137 FPGKVSGGLKLNSLEVL 153
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 52/143 (36%), Gaps = 46/143 (32%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL-------------------- 125
L L N++ SG + ELG L +L+L N GTIP +
Sbjct: 516 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 575
Query: 126 ------------GNLKSLISL--------------DLYNNNISGKIPPSLAKLKSLVFLR 159
GNL + ++ + G P+ S++FL
Sbjct: 576 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 635
Query: 160 LNDNRLTGQIPRELVGISSLKVV 182
++ N L+G IP+E+ + L ++
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFIL 658
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 59/96 (61%)
Query: 76 TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLD 135
T + + + LD+ + LSG + E+G + +L L L N+I G+IP E+G+L+ L LD
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686
Query: 136 LYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPR 171
L +N + G+IP +++ L L + L++N L+G IP
Sbjct: 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 86 LDLGNSNLSGRLVPELGK--LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
LDL ++N SG ++P L + LQ L L N G IP L N L+SL L N +SG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 144 KIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVV 182
IP SL L L L+L N L G+IP+EL+ + +L+ +
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 64 PTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV 123
P L N C N N + L L N+ +G++ P L L L L N + GTIP
Sbjct: 383 PILPNLCQ------NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Query: 124 ELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSL 179
LG+L L L L+ N + G+IP L +K+L L L+ N LTG+IP L ++L
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 65/102 (63%)
Query: 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140
+ + L L + LSG + LG L L+ L+L+ N ++G IP EL +K+L +L L N+
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 141 ISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVV 182
++G+IP L+ +L ++ L++NRLTG+IP+ + + +L ++
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%)
Query: 95 GRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKS 154
G P + +L++ N + G IP E+G++ L L+L +N+ISG IP + L+
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 155 LVFLRLNDNRLTGQIPRELVGISSLKVV 182
L L L+ N+L G+IP+ + ++ L +
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEI 709
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 92 NLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAK 151
+L+G + L +L ++ L N + G IP +G L++L L L NN+ SG IP L
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 152 LKSLVFLRLNDNRLTGQIPRELV 174
+SL++L LN N G IP +
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMF 559
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%)
Query: 93 LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKL 152
L G + EL ++ L+ L L N++ G IP L N +L + L NN ++G+IP + +L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 153 KSLVFLRLNDNRLTGQIPRELVGISSL 179
++L L+L++N +G IP EL SL
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSL 540
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
+ L N+ L+G + +G+LE+L L+L N+ G IP ELG+ +SLI LDL N +G I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 146 PPSLAK 151
P ++ K
Sbjct: 555 PAAMFK 560
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
LD+ ++N S +P LG LQ+L++ N + G + L L++ +N G I
Sbjct: 205 LDVSSNNFSTG-IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263
Query: 146 PPSLAKLKSLVFLRLNDNRLTGQIPRELVG 175
PP LKSL +L L +N+ TG+IP L G
Sbjct: 264 PP--LPLKSLQYLSLAENKFTGEIPDFLSG 291
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 55/117 (47%), Gaps = 28/117 (23%)
Query: 92 NLSGRL-VPELGKLEHLQYLELYKNNIQGTIPVELGNLK-SLISLDLYNNNIS------- 142
N SG L + L K+ L+ L+L N G +P L NL SL++LDL +NN S
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 143 -------------------GKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLK 180
GKIPP+L+ LV L L+ N L+G IP L +S L+
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 98 VPELGKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156
+P L L+ LQYL L +N G IP L G +L LDL N+ G +PP L
Sbjct: 263 IPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 157 FLRLNDNRLTGQIPRE-LVGISSLKVV 182
L L+ N +G++P + L+ + LKV+
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVL 348
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNN 139
+ +T LDL ++ G + P G L+ L L NN G +P++ L ++ L LDL N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 140 NISGKIPPSLAKLK-SLVFLRLNDNRLTGQI 169
SG++P SL L SL+ L L+ N +G I
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 14/137 (10%)
Query: 55 PD-NVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLS---GRLVPELGKLEHLQYL 110
PD N+L W NPCT+ +TC +D++VT +DL + L+ + L L L+ L
Sbjct: 25 PDKNLLPDWSSN-KNPCTFDGVTC-RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82
Query: 111 ELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP--PSLAKLKSLVFLRLNDNRLTGQ 168
L ++I G++ SL SLDL N++SG + SL L FL ++ N L
Sbjct: 83 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--D 139
Query: 169 IPRELVG---ISSLKVV 182
P ++ G ++SL+V+
Sbjct: 140 FPGKVSGGLKLNSLEVL 156
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 48/134 (35%), Gaps = 46/134 (34%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL-------------------- 125
L L N++ SG + ELG L +L+L N GTIP +
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578
Query: 126 ------------GNLKSLISL--------------DLYNNNISGKIPPSLAKLKSLVFLR 159
GNL + ++ + G P+ S++FL
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
Query: 160 LNDNRLTGQIPREL 173
++ N L+G IP+E+
Sbjct: 639 MSYNMLSGYIPKEI 652
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 98 VPE--LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
VPE L L L L++N + P +L L++L L+ NN+S +LA L++L
Sbjct: 167 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 226
Query: 156 VFLRLNDN 163
+LRLNDN
Sbjct: 227 QYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 98 VPE--LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
VPE L L L L++N + P +L L++L L+ NN+S +LA L++L
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227
Query: 156 VFLRLNDN 163
+LRLNDN
Sbjct: 228 QYLRLNDN 235
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 111 ELYKNNIQGT-IPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQI 169
ELY + Q T +P EL N K L +DL NN IS S + + L+ L L+ NRL
Sbjct: 35 ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 170 PRELVGISSLKVV 182
PR G+ SL+++
Sbjct: 95 PRTFDGLKSLRLL 107
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 59 LQSWDPTLVNPCTWFHITCNQDNRVTRL------DLGNSN---LSGRLVPELGK-----L 104
LQ P L QDN + L DLGN L G +P + + L
Sbjct: 116 LQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGL 175
Query: 105 EHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDN 163
L L L++N++ P +L L++L L+ NN+S L L+SL +LRLNDN
Sbjct: 176 HSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 32/79 (40%)
Query: 104 LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDN 163
L LQYL L NN+Q +L +L L L+ N I + L SL L L+ N
Sbjct: 127 LAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQN 186
Query: 164 RLTGQIPRELVGISSLKVV 182
+ P + L +
Sbjct: 187 HVARVHPHAFRDLGRLMTL 205
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%)
Query: 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
+ +L+L + L+G H+Q L+L +N I+ L L +L+LY+N I
Sbjct: 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114
Query: 142 SGKIPPSLAKLKSLVFLRLNDN 163
S +P S L SL L L N
Sbjct: 115 SCVMPGSFEHLNSLTSLNLASN 136
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
T LDL N+++S + L+HL L L N I L+ L L + N++
Sbjct: 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115
Query: 143 GKIPPSLAKLKSLVFLRLNDNRLTGQIPR 171
+IPP+L SLV LR++DNR+ ++P+
Sbjct: 116 -EIPPNLP--SSLVELRIHDNRIR-KVPK 140
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 30/65 (46%)
Query: 101 LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160
KL +L YL LY N +Q L +L LDL NN + KL L L L
Sbjct: 129 FDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSL 188
Query: 161 NDNRL 165
NDN+L
Sbjct: 189 NDNQL 193
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 108 QYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTG 167
Q L LY N I P L L LDL NN ++ KL L L LNDN+L
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 168 QIPR 171
IPR
Sbjct: 93 -IPR 95
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%)
Query: 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN 139
++TRLDL N+ L+ KL L L L N ++ NL+SL + L NN
Sbjct: 55 QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 108 QYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTG 167
Q L LY N I P L L LDL NN ++ KL L L LNDN+L
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK- 99
Query: 168 QIPR 171
IPR
Sbjct: 100 SIPR 103
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN 139
++TRLDL N+ L+ KL L L L N ++ NLKSL + L NN
Sbjct: 63 QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 108 QYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTG 167
Q L LY N I P L L LDL NN ++ KL L L LNDN+L
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK- 91
Query: 168 QIPR 171
IPR
Sbjct: 92 SIPR 95
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN 139
++TRLDL N+ L+ KL L L L N ++ NLKSL + L NN
Sbjct: 55 QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 105 EHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNR 164
E + + L +N I+ P K L +DL NN IS P + L+SL L L N+
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 165 LTGQIPREL 173
+T ++P+ L
Sbjct: 92 IT-ELPKSL 99
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 105 EHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNR 164
E + + L +N I+ P K L +DL NN IS P + L+SL L L N+
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 165 LTGQIPREL 173
+T ++P+ L
Sbjct: 92 IT-ELPKSL 99
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 90 NSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLK--SLISLDLYNNNISGKIPP 147
N +L+ +L EL +Q L L N + T LK +L LDL NN+
Sbjct: 208 NPHLTEKLCWELSNTS-IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNG 266
Query: 148 SLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVV 182
S + L SL +L L N + PR G+S+L+ +
Sbjct: 267 SFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYL 301
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 9/109 (8%)
Query: 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDL----YN 138
+T+LDL +NL L L+YL L NNIQ P L +L L L
Sbjct: 250 LTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTK 309
Query: 139 NNISGKIPP-----SLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVV 182
++S P S LK L +L ++DN + G+ SLK +
Sbjct: 310 QSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYL 358
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
LDL ++ L+ L ELG L+Y + +N+ T+P E GNL +L L + N + +
Sbjct: 275 LDLSHNRLTS-LPAELGSCFQLKYFYFF-DNMVTTLPWEFGNLCNLQFLGVEGNPLEKQF 332
Query: 146 PPSLAK--LKSLVFLRLNDNRLTGQIPRE 172
L + + L+F L DNR +P E
Sbjct: 333 LKILTEKSVTGLIFY-LRDNRPEIPLPHE 360
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 121 IPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLK 180
+P E+ NL +L LDL +N ++ +P L L + DN +T +P E + +L+
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQ 319
Query: 181 VV 182
+
Sbjct: 320 FL 321
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 98 VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157
+ + L++L YL LY NNI PV +L L L YNN +S SLA L ++ +
Sbjct: 298 ISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVSDV--SSLANLTNINW 353
Query: 158 LRLNDNRLTGQIP 170
L N+++ P
Sbjct: 354 LSAGHNQISDLTP 366
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 98 VPELGKLEHLQYLELYKNNIQ--GTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
+ LG L +L L L N ++ GT L +L +L LDL NN IS P L+ L L
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLAP--LSGLTKL 263
Query: 156 VFLRLNDNRLTGQIPRELVGISSL 179
L+L N+++ P L G+++L
Sbjct: 264 TELKLGANQISNISP--LAGLTAL 285
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 98 VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157
+ + L++L YL LY NNI PV +L L L YNN +S SLA L ++ +
Sbjct: 298 ISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVSDV--SSLANLTNINW 353
Query: 158 LRLNDNRLTGQIP 170
L N+++ P
Sbjct: 354 LSAGHNQISDLTP 366
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 98 VPELGKLEHLQYLELYKNNIQ--GTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
+ LG L +L L L N ++ GT L +L +L LDL NN IS P L+ L L
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLAP--LSGLTKL 263
Query: 156 VFLRLNDNRLTGQIPRELVGISSL 179
L+L N+++ P L G+++L
Sbjct: 264 TELKLGANQISNISP--LAGLTAL 285
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 98 VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157
+ + L++L YL LY NNI PV +L L L YNN +S SLA L ++ +
Sbjct: 297 ISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVSDV--SSLANLTNINW 352
Query: 158 LRLNDNRLTGQIP 170
L N+++ P
Sbjct: 353 LSAGHNQISDLTP 365
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 98 VPELGKLEHLQYLELYKNNIQ--GTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
+ LG L +L L L N ++ GT L +L +L LDL NN IS P L+ L L
Sbjct: 209 ITPLGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLAP--LSGLTKL 262
Query: 156 VFLRLNDNRLTGQIPRELVGISSL 179
L+L N+++ P L G+++L
Sbjct: 263 TELKLGANQISNISP--LAGLTAL 284
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 98 VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157
+ + L++L YL LY NNI PV +L L L YNN +S SLA L ++ +
Sbjct: 302 ISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSDV--SSLANLTNINW 357
Query: 158 LRLNDNRLTGQIP 170
L N+++ P
Sbjct: 358 LSAGHNQISDLTP 370
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 98 VPELGKLEHLQYLELYKNNIQ--GTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
+ LG L +L L L N ++ GT L +L +L LDL NN IS P L+ L L
Sbjct: 214 ITPLGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLAP--LSGLTKL 267
Query: 156 VFLRLNDNRLTGQIPRELVGISSL 179
L+L N+++ P L G+++L
Sbjct: 268 TELKLGANQISNISP--LAGLTAL 289
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
++ LDL ++LS L HLQ L + ++ IQ NL+SL+ ++L +NN+
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
Query: 142 S 142
+
Sbjct: 268 T 268
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 98 VPELGKLEHLQYLELYKNNIQ--GTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
+ LG L +L L L N ++ GT L +L +L LDL NN IS P L+ L L
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLAP--LSGLTKL 263
Query: 156 VFLRLNDNRLTGQIPRELVGISSL 179
L+L N+++ P L G+++L
Sbjct: 264 TELKLGANQISNISP--LAGLTAL 285
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 98 VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157
+ + L++L YL LY NNI PV +L L L NN +S SLA L ++ +
Sbjct: 298 ISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFSNNKVSDV--SSLANLTNINW 353
Query: 158 LRLNDNRLTGQIP 170
L N+++ P
Sbjct: 354 LSAGHNQISDLTP 366
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 98 VPELGKLEHLQYLELYKNNIQ--GTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
+ LG L +L L L N ++ GT L +L +L LDL NN IS P L+ L L
Sbjct: 209 ITPLGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLAP--LSGLTKL 262
Query: 156 VFLRLNDNRLTGQIPRELVGISSL 179
L+L N+++ P L G+++L
Sbjct: 263 TELKLGANQISNISP--LAGLTAL 284
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 98 VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157
+ + L++L YL LY NNI PV +L L L NN +S SLA L ++ +
Sbjct: 297 ISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFSNNKVSDV--SSLANLTNINW 352
Query: 158 LRLNDNRLTGQIP 170
L N+++ P
Sbjct: 353 LSAGHNQISDLTP 365
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 98 VPELGKLEHLQYLELYKNNIQ--GTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
+ LG L +L L L N ++ GT L +L +L LDL NN IS P L+ L L
Sbjct: 213 ITPLGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLAP--LSGLTKL 266
Query: 156 VFLRLNDNRLTGQIPRELVGISSL 179
L+L N+++ P L G+++L
Sbjct: 267 TELKLGANQISNISP--LAGLTAL 288
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 98 VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157
+ + L++L YL LY NNI PV +L L L NN +S SLA L ++ +
Sbjct: 301 ISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSDV--SSLANLTNINW 356
Query: 158 LRLNDNRLTGQIP 170
L N+++ P
Sbjct: 357 LSAGHNQISDLTP 369
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 103 KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLND 162
K+E+ L+ + T+ L L + LDL +N + +PP+LA L+ L L+ +D
Sbjct: 437 KMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASD 495
Query: 163 NRL 165
N L
Sbjct: 496 NAL 498
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 103 KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLND 162
K+E+ L+ + T+ L L + LDL +N + +PP+LA L+ L L+ +D
Sbjct: 437 KMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASD 495
Query: 163 NRL 165
N L
Sbjct: 496 NAL 498
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%)
Query: 104 LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDN 163
L L YL L N +Q L SL L LYNN + + KL L L+L++N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
Query: 164 RL 165
+L
Sbjct: 192 QL 193
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%)
Query: 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
++T L LG + L KL L+ L LY N ++ L L +L L NN +
Sbjct: 134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Query: 142 SGKIPPSLAKLKSLVFLRLNDN 163
+ L+ L L+L +N
Sbjct: 194 KRVPEGAFDSLEKLKMLQLQEN 215
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
LDLG + + E HL+ LEL +N + P NL +L +L L +N +
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 146 PPSLAKLKSLVFLRLNDNR---LTGQIPRELVGISSLKV 181
L +L L +++N+ L + ++L + SL+V
Sbjct: 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 67 VNPCTWFHITCNQDNRVTRL-DLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL 125
+ P F C+ RV + DLG + L P+ L+L N I +
Sbjct: 21 MGPVCPFRCQCHL--RVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDF 72
Query: 126 GNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPREL 173
NLK+L +L L NN IS P + A L L L L+ N+L ++P ++
Sbjct: 73 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM 119
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 105 EHLQYLELYKNNIQGTIPVE--LGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLND 162
E +Q + + NN++ T PVE L K L L+ N + GK+P +++K L L L
Sbjct: 305 EKIQIIYIGYNNLK-TFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIK-LASLNLAY 362
Query: 163 NRLTGQIPRELVGIS 177
N++T +IP G +
Sbjct: 363 NQIT-EIPANFCGFT 376
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 75 ITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLEL 112
++ N + RVT L L SGR+ +G+L L+ L L
Sbjct: 75 VSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLAL 112
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 67 VNPCTWFHITCNQDNRVTRL-DLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL 125
+ P F C+ RV + DLG + L P+ L+L N I +
Sbjct: 21 MGPVCPFRCQCHL--RVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDF 72
Query: 126 GNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPREL 173
NLK+L +L L NN IS P + A L L L L+ N+L ++P ++
Sbjct: 73 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM 119
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNN 139
++T L+L + L+ V KL L +L L+ N ++ +IP+ + NLKSL + L+NN
Sbjct: 65 QLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK-SIPMGVFDNLKSLTHIYLFNN 122
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
L+LG NL +P L L L+ LEL N + P L SL L L + ++
Sbjct: 161 LNLGMCNLKD--IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIE 218
Query: 146 PPSLAKLKSLVFLRLNDNRLTGQIPREL 173
+ LKSL L L+ N L +P +L
Sbjct: 219 RNAFDDLKSLEELNLSHNNLMS-LPHDL 245
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
L+LG NL +P L L L+ LEL N + P L SL L L + ++
Sbjct: 161 LNLGMCNLKD--IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIE 218
Query: 146 PPSLAKLKSLVFLRLNDNRLTGQIPREL 173
+ LKSL L L+ N L +P +L
Sbjct: 219 RNAFDDLKSLEELNLSHNNLMS-LPHDL 245
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 76 TCNQDNRVTRLDLGNSNLSG---RLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLI 132
TC + L+L ++ L+G R +P K+ L+L+ N I +IP ++ +L++L
Sbjct: 423 TCAWAESILVLNLSSNMLTGSVFRCLPPKVKV-----LDLHNNRIM-SIPKDVTHLQALQ 476
Query: 133 SLDLYNNNISGKIPPSLAKLKSLVFLRLNDN 163
L++ +N + +L SL ++ L+DN
Sbjct: 477 ELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
L+LG N+ +P L L L+ LE+ N+ P L SL L + N+ +S
Sbjct: 201 LNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258
Query: 146 PPSLAKLKSLVFLRLNDNRLTGQIPREL 173
+ L SLV L L N L+ +P +L
Sbjct: 259 RNAFDGLASLVELNLAHNNLS-SLPHDL 285
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 76 TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLD 135
C+ N+ +++ LS VP+ G + +YL L +NNIQ +L L L
Sbjct: 49 VCSCSNQFSKVVCTRRGLSE--VPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQ 105
Query: 136 LYNNNISGKIPPSLAKLKSLVFLRLNDNRLT 166
L N+I + L SL L L DN LT
Sbjct: 106 LGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 101 LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159
KL L L+L N+++ NLKSL + LYNN P + + +++LR
Sbjct: 77 FDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN-------PWDCECRDIMYLR 128
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 107 LQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLT 166
L+YL+L N++ +L++L L LYNN+I + + L L L+ N+++
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
Query: 167 GQIPRELV 174
+ P EL+
Sbjct: 150 -RFPVELI 156
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 27/63 (42%)
Query: 103 KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLND 162
KL +L YL L N +Q L +L LDL N + KL L LRL
Sbjct: 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190
Query: 163 NRL 165
N+L
Sbjct: 191 NQL 193
>pdb|4EZG|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
pdb|4EZG|B Chain B, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
Length = 197
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 40 SEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVP 99
+E L A + +++ PD+ +++ L+ + +IT Q N +T + L N N V
Sbjct: 3 AEQTGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQXNSLTYITLANIN-----VT 57
Query: 100 ELGKLEHLQYL-ELYKNNIQGTIPVELGNLKSLISLDLYNNNI-SGKIP 146
+L +E+ + +L NNI T + L +L L + ++ S KIP
Sbjct: 58 DLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIXGKDVTSDKIP 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,581,733
Number of Sequences: 62578
Number of extensions: 172688
Number of successful extensions: 641
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 454
Number of HSP's gapped (non-prelim): 151
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)