Query 030146
Match_columns 182
No_of_seqs 246 out of 3125
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 09:15:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 8E-20 1.7E-24 162.2 13.9 143 38-181 27-192 (968)
2 PLN03150 hypothetical protein; 99.8 4E-18 8.7E-23 144.8 11.9 137 37-175 369-512 (623)
3 PLN00113 leucine-rich repeat r 99.4 5.8E-13 1.3E-17 118.7 6.6 102 81-182 475-576 (968)
4 KOG0617 Ras suppressor protein 99.2 2.7E-13 5.9E-18 96.2 -3.4 83 81-166 33-115 (264)
5 KOG0617 Ras suppressor protein 99.1 2.3E-12 5E-17 91.5 -2.5 98 81-181 56-154 (264)
6 PF13855 LRR_8: Leucine rich r 99.0 2.4E-10 5.3E-15 68.2 3.0 61 105-165 1-61 (61)
7 PLN03150 hypothetical protein; 99.0 6.7E-10 1.4E-14 94.9 6.7 90 81-170 442-532 (623)
8 KOG0472 Leucine-rich repeat pr 98.9 1.3E-10 2.7E-15 92.2 -1.6 83 81-166 435-541 (565)
9 PF13855 LRR_8: Leucine rich r 98.9 1.7E-09 3.7E-14 64.5 3.4 60 82-141 2-61 (61)
10 KOG4194 Membrane glycoprotein 98.8 2.1E-09 4.5E-14 88.9 3.4 103 80-182 124-226 (873)
11 KOG0444 Cytoskeletal regulator 98.8 2.6E-10 5.7E-15 95.0 -2.9 98 81-181 222-320 (1255)
12 PF14580 LRR_9: Leucine-rich r 98.8 2.8E-09 6.1E-14 76.8 2.5 98 81-182 42-145 (175)
13 KOG4194 Membrane glycoprotein 98.8 6E-10 1.3E-14 92.0 -1.5 99 82-180 270-368 (873)
14 PF14580 LRR_9: Leucine-rich r 98.8 6.1E-09 1.3E-13 75.1 3.8 96 82-182 20-118 (175)
15 PF08263 LRRNT_2: Leucine rich 98.7 1.8E-08 4E-13 55.7 4.1 40 39-78 2-43 (43)
16 KOG4237 Extracellular matrix p 98.6 3.7E-09 7.9E-14 83.7 -1.5 100 81-180 67-167 (498)
17 KOG0444 Cytoskeletal regulator 98.6 5.7E-09 1.2E-13 87.3 -1.0 83 81-166 103-186 (1255)
18 KOG0472 Leucine-rich repeat pr 98.6 2.4E-09 5.2E-14 85.0 -3.9 95 82-181 184-301 (565)
19 KOG0618 Serine/threonine phosp 98.5 1E-08 2.3E-13 88.4 -1.1 99 80-182 382-481 (1081)
20 KOG0618 Serine/threonine phosp 98.4 7E-09 1.5E-13 89.4 -4.5 99 81-182 359-457 (1081)
21 PLN03210 Resistant to P. syrin 98.4 9.3E-07 2E-11 80.7 8.0 97 81-180 611-707 (1153)
22 PRK15387 E3 ubiquitin-protein 98.3 3.4E-07 7.4E-12 79.6 3.7 63 106-173 403-465 (788)
23 PF12799 LRR_4: Leucine Rich r 98.3 5.1E-07 1.1E-11 50.1 2.9 36 130-166 2-37 (44)
24 KOG4658 Apoptotic ATPase [Sign 98.3 1.5E-07 3.2E-12 83.1 1.1 100 82-182 546-647 (889)
25 PLN03210 Resistant to P. syrin 98.3 1.5E-06 3.3E-11 79.3 7.3 98 81-180 778-896 (1153)
26 PRK15370 E3 ubiquitin-protein 98.3 8.4E-06 1.8E-10 71.1 10.7 39 32-71 55-96 (754)
27 PRK15370 E3 ubiquitin-protein 98.2 5E-06 1.1E-10 72.5 8.6 77 82-166 200-296 (754)
28 KOG4237 Extracellular matrix p 98.2 3.7E-07 8E-12 72.6 1.2 78 101-178 270-347 (498)
29 KOG0532 Leucine-rich repeat (L 98.2 1.2E-07 2.6E-12 78.4 -1.8 80 83-166 168-247 (722)
30 KOG4579 Leucine-rich repeat (L 98.2 1.3E-07 2.8E-12 65.1 -1.3 88 80-171 52-140 (177)
31 COG4886 Leucine-rich repeat (L 98.2 7.2E-07 1.6E-11 72.3 2.6 96 81-180 116-212 (394)
32 PRK15387 E3 ubiquitin-protein 98.2 2.3E-06 5E-11 74.6 5.1 47 130-181 403-449 (788)
33 cd00116 LRR_RI Leucine-rich re 98.2 2.7E-07 5.9E-12 72.3 -0.6 100 82-181 109-225 (319)
34 cd00116 LRR_RI Leucine-rich re 98.2 3.7E-07 8E-12 71.5 -0.3 87 81-167 137-235 (319)
35 KOG1259 Nischarin, modulator o 98.1 3.1E-07 6.7E-12 71.0 -0.8 94 82-180 285-402 (490)
36 KOG0532 Leucine-rich repeat (L 98.1 8.5E-08 1.9E-12 79.2 -4.4 90 86-180 103-192 (722)
37 KOG4579 Leucine-rich repeat (L 98.1 4.4E-08 9.5E-13 67.3 -5.6 94 83-180 29-126 (177)
38 PF12799 LRR_4: Leucine Rich r 98.1 3.7E-06 8.1E-11 46.6 3.0 36 106-142 2-37 (44)
39 COG4886 Leucine-rich repeat (L 98.0 1.9E-06 4.2E-11 69.8 0.8 95 82-180 141-235 (394)
40 KOG1644 U2-associated snRNP A' 97.9 1.8E-05 3.8E-10 57.9 4.5 98 82-182 43-145 (233)
41 KOG1259 Nischarin, modulator o 97.9 1.5E-06 3.2E-11 67.3 -1.2 86 81-168 307-414 (490)
42 KOG4658 Apoptotic ATPase [Sign 97.7 1.8E-05 3.9E-10 70.2 2.3 98 82-182 524-623 (889)
43 KOG0531 Protein phosphatase 1, 97.5 4.4E-05 9.6E-10 62.5 1.6 83 80-167 94-176 (414)
44 KOG1859 Leucine-rich repeat pr 97.5 3.5E-06 7.6E-11 71.9 -5.1 79 82-166 188-267 (1096)
45 KOG1644 U2-associated snRNP A' 97.3 0.00035 7.6E-09 51.3 4.5 94 84-182 22-118 (233)
46 KOG1859 Leucine-rich repeat pr 97.3 2E-05 4.3E-10 67.5 -2.6 92 83-180 166-257 (1096)
47 KOG3207 Beta-tubulin folding c 97.3 5.6E-05 1.2E-09 61.1 -0.1 64 103-166 244-314 (505)
48 KOG2982 Uncharacterized conser 97.2 8.6E-05 1.9E-09 57.6 0.4 86 81-166 71-159 (418)
49 KOG2739 Leucine-rich acidic nu 97.2 0.00016 3.5E-09 54.7 1.8 97 82-182 44-148 (260)
50 KOG2123 Uncharacterized conser 97.2 7.7E-06 1.7E-10 62.7 -5.4 95 82-181 20-121 (388)
51 KOG2739 Leucine-rich acidic nu 97.1 0.00034 7.3E-09 53.0 2.5 76 99-178 37-114 (260)
52 KOG0531 Protein phosphatase 1, 97.1 0.00016 3.5E-09 59.2 0.6 81 82-166 73-153 (414)
53 KOG3207 Beta-tubulin folding c 96.9 0.00013 2.7E-09 59.1 -1.4 38 81-118 146-185 (505)
54 PF00560 LRR_1: Leucine Rich R 96.6 0.0006 1.3E-08 31.7 0.4 19 155-174 2-20 (22)
55 KOG3665 ZYG-1-like serine/thre 96.5 0.00063 1.4E-08 59.2 -0.1 92 75-168 167-265 (699)
56 PF00560 LRR_1: Leucine Rich R 96.3 0.0016 3.5E-08 30.2 0.7 20 131-151 2-21 (22)
57 KOG3665 ZYG-1-like serine/thre 96.0 0.0024 5.3E-08 55.6 1.0 85 80-166 147-233 (699)
58 KOG0473 Leucine-rich repeat pr 95.9 0.00012 2.6E-09 55.0 -6.4 84 80-166 41-124 (326)
59 KOG1909 Ran GTPase-activating 95.6 0.0041 8.9E-08 49.2 0.5 85 82-166 186-283 (382)
60 KOG1909 Ran GTPase-activating 95.3 0.0096 2.1E-07 47.2 1.7 63 104-166 156-226 (382)
61 PRK15386 type III secretion pr 94.9 0.086 1.9E-06 43.2 6.3 32 82-115 73-104 (426)
62 PF13504 LRR_7: Leucine rich r 94.8 0.016 3.4E-07 25.0 1.0 13 130-142 2-14 (17)
63 KOG0473 Leucine-rich repeat pr 94.3 0.00063 1.4E-08 51.2 -6.7 79 100-181 37-115 (326)
64 PF13306 LRR_5: Leucine rich r 94.2 0.095 2E-06 35.2 4.4 93 82-179 36-128 (129)
65 PRK15386 type III secretion pr 94.2 0.1 2.2E-06 42.8 5.2 61 81-148 52-113 (426)
66 PF13306 LRR_5: Leucine rich r 94.1 0.11 2.4E-06 34.8 4.5 79 82-163 13-91 (129)
67 smart00369 LRR_TYP Leucine-ric 93.6 0.065 1.4E-06 25.6 1.9 18 153-171 2-19 (26)
68 smart00370 LRR Leucine-rich re 93.6 0.065 1.4E-06 25.6 1.9 18 153-171 2-19 (26)
69 KOG2982 Uncharacterized conser 93.2 0.026 5.7E-07 44.2 0.0 63 104-166 70-134 (418)
70 COG5238 RNA1 Ran GTPase-activa 92.6 0.075 1.6E-06 41.2 1.8 41 102-142 89-133 (388)
71 KOG2123 Uncharacterized conser 91.8 0.0085 1.8E-07 46.4 -4.0 74 104-182 18-93 (388)
72 KOG2120 SCF ubiquitin ligase, 91.6 0.012 2.7E-07 46.0 -3.4 37 128-164 312-349 (419)
73 smart00364 LRR_BAC Leucine-ric 87.6 0.39 8.5E-06 23.1 1.3 17 130-147 3-19 (26)
74 COG5238 RNA1 Ran GTPase-activa 87.5 0.75 1.6E-05 35.9 3.4 36 82-117 93-132 (388)
75 KOG2120 SCF ubiquitin ligase, 86.3 0.02 4.4E-07 44.8 -5.6 85 82-166 186-273 (419)
76 PF13516 LRR_6: Leucine Rich r 85.0 0.11 2.5E-06 24.2 -1.4 13 130-142 3-15 (24)
77 KOG3864 Uncharacterized conser 81.4 0.24 5.2E-06 36.6 -1.5 83 82-164 102-187 (221)
78 smart00365 LRR_SD22 Leucine-ri 80.5 1.5 3.2E-05 21.1 1.6 15 152-166 1-15 (26)
79 smart00368 LRR_RI Leucine rich 79.3 1.6 3.4E-05 21.2 1.5 14 153-166 2-15 (28)
80 KOG3763 mRNA export factor TAP 58.0 4.9 0.00011 34.3 1.0 62 80-143 217-284 (585)
81 KOG1947 Leucine rich repeat pr 43.7 12 0.00026 30.7 1.1 85 81-165 214-307 (482)
82 PF13260 DUF4051: Protein of u 39.8 53 0.0011 18.2 2.9 14 39-52 30-43 (54)
83 PF15183 MRAP: Melanocortin-2 37.6 60 0.0013 20.4 3.2 19 9-27 41-59 (90)
84 smart00367 LRR_CC Leucine-rich 37.6 24 0.00052 16.4 1.2 11 129-139 2-12 (26)
85 TIGR00864 PCC polycystin catio 37.2 24 0.00052 36.1 2.1 32 87-118 1-32 (2740)
86 KOG3763 mRNA export factor TAP 31.0 29 0.00062 29.9 1.4 64 103-168 216-285 (585)
87 TIGR00864 PCC polycystin catio 26.3 45 0.00098 34.4 2.0 14 81-94 19-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=8e-20 Score=162.25 Aligned_cols=143 Identities=34% Similarity=0.626 Sum_probs=104.9
Q ss_pred CchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcccceeeCCCCCEEEEEcCCCCCCccccccccCCCCCCeeecccccc
Q 030146 38 GNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNI 117 (182)
Q Consensus 38 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~c~w~~v~c~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 117 (182)
.++|+.+|+++|+.+.++...+.+|+.. .++|.|.|++|+..++|+.|++++|.+.+.++..+..+++|+.|++++|.+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~-~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~ 105 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSS-ADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL 105 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCC-CCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence 3478999999999998777778899754 689999999998878999999999998888888888888888888888888
Q ss_pred CCCCCcccC-CCCCCCEEEccCCcCC----------------------ccCcccccCCCCCceEecccccCCCCCccccc
Q 030146 118 QGTIPVELG-NLKSLISLDLYNNNIS----------------------GKIPPSLAKLKSLVFLRLNDNRLTGQIPRELV 174 (182)
Q Consensus 118 ~~~~p~~~~-~l~~L~~L~ls~n~l~----------------------~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~ 174 (182)
.+.+|..+. .+++|++|++++|+++ +.+|..++++++|++|++++|.+.+.+|..++
T Consensus 106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 185 (968)
T PLN00113 106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185 (968)
T ss_pred CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh
Confidence 776665543 4555555555555444 44455555566666666666666656666565
Q ss_pred CCCCCcc
Q 030146 175 GISSLKV 181 (182)
Q Consensus 175 ~l~~L~~ 181 (182)
++++|++
T Consensus 186 ~l~~L~~ 192 (968)
T PLN00113 186 NLTSLEF 192 (968)
T ss_pred hCcCCCe
Confidence 5555554
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.77 E-value=4e-18 Score=144.84 Aligned_cols=137 Identities=38% Similarity=0.560 Sum_probs=118.7
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCCCCCCCCC--CCcccceeeCCC-----CCEEEEEcCCCCCCccccccccCCCCCCe
Q 030146 37 SGNSEGDALYALRRSLSDPDNVLQSWDPTLVN--PCTWFHITCNQD-----NRVTRLDLGNSNLSGRLVPELGKLEHLQY 109 (182)
Q Consensus 37 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~--~c~w~~v~c~~~-----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~ 109 (182)
...+|.++|+.+|+.+..+.. .+|....+. .|.|.|+.|... ..++.|+|++|.+.|.+|..+..+++|+.
T Consensus 369 t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~ 446 (623)
T PLN03150 369 TLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQS 446 (623)
T ss_pred cCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCE
Confidence 455789999999999865532 478642111 127999999531 24899999999999999999999999999
Q ss_pred eeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecccccCCCCCcccccC
Q 030146 110 LELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVG 175 (182)
Q Consensus 110 L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 175 (182)
|++++|.+.|.+|..+..+++|+.|++++|+++|.+|+.++++++|+.|+|++|+++|.+|..++.
T Consensus 447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999988765
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.38 E-value=5.8e-13 Score=118.72 Aligned_cols=102 Identities=41% Similarity=0.671 Sum_probs=86.9
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+.++++|+.|++
T Consensus 475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 554 (968)
T PLN00113 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554 (968)
T ss_pred ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence 45788888888888888888888888888889888888888888888888889999988888888888888888889999
Q ss_pred ccccCCCCCcccccCCCCCccC
Q 030146 161 NDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~L 182 (182)
++|+++|.+|..+.++++|++|
T Consensus 555 s~N~l~~~~p~~l~~l~~L~~l 576 (968)
T PLN00113 555 SQNQLSGEIPKNLGNVESLVQV 576 (968)
T ss_pred CCCcccccCChhHhcCcccCEE
Confidence 9888888888888887777653
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.23 E-value=2.7e-13 Score=96.15 Aligned_cols=83 Identities=28% Similarity=0.502 Sum_probs=56.3
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.+.+++|.++ .+|+.+..+.+|+.|++.+|.+. .+|..+..++.|+.|+++.|++. .+|.+|+.++.|+.||+
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 45666777777776 56666667777777777777766 55666667777777777777666 56666777777777766
Q ss_pred ccccCC
Q 030146 161 NDNRLT 166 (182)
Q Consensus 161 ~~N~l~ 166 (182)
++|++.
T Consensus 110 tynnl~ 115 (264)
T KOG0617|consen 110 TYNNLN 115 (264)
T ss_pred cccccc
Confidence 666654
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.13 E-value=2.3e-12 Score=91.47 Aligned_cols=98 Identities=24% Similarity=0.452 Sum_probs=77.9
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCc-cCcccccCCCCCceEe
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG-KIPPSLAKLKSLVFLR 159 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~ 159 (182)
.+++.+++.+|+++ ..|..++.++.|+.|+++.|++. ..|..|+.++.|+.||+.+|++.. .+|..|..+..|+.|.
T Consensus 56 ~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 56 KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred hhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 45778889999998 77888999999999999999988 788899999999999999888763 4566666666777777
Q ss_pred cccccCCCCCcccccCCCCCcc
Q 030146 160 LNDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 160 L~~N~l~g~~p~~~~~l~~L~~ 181 (182)
+++|.|. .+|+.++++.+|+.
T Consensus 134 l~dndfe-~lp~dvg~lt~lqi 154 (264)
T KOG0617|consen 134 LGDNDFE-ILPPDVGKLTNLQI 154 (264)
T ss_pred hcCCCcc-cCChhhhhhcceeE
Confidence 7777776 66666777666654
No 6
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.01 E-value=2.4e-10 Score=68.22 Aligned_cols=61 Identities=34% Similarity=0.548 Sum_probs=42.3
Q ss_pred CCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecccccC
Q 030146 105 EHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRL 165 (182)
Q Consensus 105 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l 165 (182)
++|+.|++++|.++...+..+..+++|++|++++|.++...|..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3567777777777754445667777777777777777755555677777777777777754
No 7
>PLN03150 hypothetical protein; Provisional
Probab=99.01 E-value=6.7e-10 Score=94.93 Aligned_cols=90 Identities=31% Similarity=0.551 Sum_probs=81.3
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCC-CCCceEe
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKL-KSLVFLR 159 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l-~~L~~L~ 159 (182)
.+++.|+|++|.+.|.+|..+..+++|+.|++++|.+.|.+|..++.+++|+.|++++|.++|.+|..+..+ .++..++
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~ 521 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN 521 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEE
Confidence 578999999999999999999999999999999999999999999999999999999999999999988764 4677899
Q ss_pred cccccCCCCCc
Q 030146 160 LNDNRLTGQIP 170 (182)
Q Consensus 160 L~~N~l~g~~p 170 (182)
+.+|......|
T Consensus 522 ~~~N~~lc~~p 532 (623)
T PLN03150 522 FTDNAGLCGIP 532 (623)
T ss_pred ecCCccccCCC
Confidence 99998664444
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.90 E-value=1.3e-10 Score=92.15 Aligned_cols=83 Identities=39% Similarity=0.597 Sum_probs=52.6
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcc------------------------cCCCCCCCEEEc
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE------------------------LGNLKSLISLDL 136 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~------------------------~~~l~~L~~L~l 136 (182)
.+++-+++++|.+. .+|.+++.+..|+.++++.|+|. .+|.. +..+.+|..||+
T Consensus 435 ~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL 512 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL 512 (565)
T ss_pred hcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence 45666777777766 67777777777888888777765 33332 444555555666
Q ss_pred cCCcCCccCcccccCCCCCceEecccccCC
Q 030146 137 YNNNISGKIPPSLAKLKSLVFLRLNDNRLT 166 (182)
Q Consensus 137 s~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 166 (182)
.+|.+. .+|+.++++++|++|.+.+|+|.
T Consensus 513 ~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 513 QNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred CCCchh-hCChhhccccceeEEEecCCccC
Confidence 666555 45555566666666666666554
No 9
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=1.7e-09 Score=64.49 Aligned_cols=60 Identities=35% Similarity=0.484 Sum_probs=54.7
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcC
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l 141 (182)
+++.|++++|.+....+..|..+++|+.|++++|.+....|..+..+++|+++++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 688999999999976667889999999999999999977778899999999999999975
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.84 E-value=2.1e-09 Score=88.91 Aligned_cols=103 Identities=25% Similarity=0.312 Sum_probs=82.4
Q ss_pred CCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
.++++.|+|.+|.|...-.+++..++.|+.+||+.|.++....+.+..-.++++|+|++|+++..-...|..+.+|..|.
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 46899999999998877677888889999999999999854445566667899999999999876666788888999999
Q ss_pred cccccCCCCCcccccCCCCCccC
Q 030146 160 LNDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 160 L~~N~l~g~~p~~~~~l~~L~~L 182 (182)
|+.|.++...+..|.++++|+.|
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESL 226 (873)
T ss_pred cccCcccccCHHHhhhcchhhhh
Confidence 99999984444556668888754
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.80 E-value=2.6e-10 Score=95.04 Aligned_cols=98 Identities=31% Similarity=0.446 Sum_probs=74.3
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.++..+|++.|++. .+|+.+..+++|+.|++++|.++ .+.-..+.+.+|+.|++|+|+++ .+|+.+..+++|+.|.+
T Consensus 222 ~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~ 298 (1255)
T KOG0444|consen 222 HNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYA 298 (1255)
T ss_pred hhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHh
Confidence 46777888888888 67888888888888888888887 44445566677888888888887 77777777777777777
Q ss_pred ccccCC-CCCcccccCCCCCcc
Q 030146 161 NDNRLT-GQIPRELVGISSLKV 181 (182)
Q Consensus 161 ~~N~l~-g~~p~~~~~l~~L~~ 181 (182)
.+|+++ .-||+.++++.+|++
T Consensus 299 n~NkL~FeGiPSGIGKL~~Lev 320 (1255)
T KOG0444|consen 299 NNNKLTFEGIPSGIGKLIQLEV 320 (1255)
T ss_pred ccCcccccCCccchhhhhhhHH
Confidence 777776 246777777766654
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.79 E-value=2.8e-09 Score=76.83 Aligned_cols=98 Identities=33% Similarity=0.386 Sum_probs=44.1
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCccc-CCCCCCCEEEccCCcCCcc-CcccccCCCCCceE
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNNNISGK-IPPSLAKLKSLVFL 158 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ls~n~l~~~-~p~~~~~l~~L~~L 158 (182)
.+++.|++++|.++.. +.+..++.|+.|++++|+++. ++..+ ..+++|+.|++++|++... .-..+..+++|+.|
T Consensus 42 ~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred cCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 4688899999998843 357778899999999999984 44333 3578899999999988742 11346678889999
Q ss_pred ecccccCCCCCc----ccccCCCCCccC
Q 030146 159 RLNDNRLTGQIP----RELVGISSLKVV 182 (182)
Q Consensus 159 ~L~~N~l~g~~p----~~~~~l~~L~~L 182 (182)
++.+|+++.. + ..+..+|+|+.|
T Consensus 119 ~L~~NPv~~~-~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 119 SLEGNPVCEK-KNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp E-TT-GGGGS-TTHHHHHHHH-TT-SEE
T ss_pred eccCCcccch-hhHHHHHHHHcChhhee
Confidence 9999988732 3 245667777653
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.78 E-value=6e-10 Score=92.02 Aligned_cols=99 Identities=28% Similarity=0.241 Sum_probs=56.7
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
+++.|+|+.|++...-...+..++.|+.|+++.|.+...-++.+..+++|++|+|++|+++..-+..|..+..|++|+|+
T Consensus 270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs 349 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS 349 (873)
T ss_pred ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccc
Confidence 45666666666665445556666666666666666665556666666666666666666664434445555555555555
Q ss_pred cccCCCCCcccccCCCCCc
Q 030146 162 DNRLTGQIPRELVGISSLK 180 (182)
Q Consensus 162 ~N~l~g~~p~~~~~l~~L~ 180 (182)
.|.+...--..|..+++|+
T Consensus 350 ~Nsi~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 350 HNSIDHLAEGAFVGLSSLH 368 (873)
T ss_pred ccchHHHHhhHHHHhhhhh
Confidence 5555432223333344433
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.77 E-value=6.1e-09 Score=75.09 Aligned_cols=96 Identities=32% Similarity=0.495 Sum_probs=34.9
Q ss_pred CEEEEEcCCCCCCcccccccc-CCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccc-cCCCCCceEe
Q 030146 82 RVTRLDLGNSNLSGRLVPELG-KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSL-AKLKSLVFLR 159 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~-~~l~~L~~L~ 159 (182)
++++|+|.+|.++. + +.+. .+.+|+.|++++|.+.. ++ .+..++.|+.|++++|+++ .+++.+ ..+++|+.|+
T Consensus 20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 47889999999984 3 3455 57899999999999994 43 5788999999999999999 555545 4689999999
Q ss_pred cccccCCCC-CcccccCCCCCccC
Q 030146 160 LNDNRLTGQ-IPRELVGISSLKVV 182 (182)
Q Consensus 160 L~~N~l~g~-~p~~~~~l~~L~~L 182 (182)
+++|++... --..+..+++|++|
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EE
T ss_pred CcCCcCCChHHhHHHHcCCCccee
Confidence 999999731 11345667777653
No 15
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.73 E-value=1.8e-08 Score=55.69 Aligned_cols=40 Identities=45% Similarity=1.061 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHhcC-CCCCCCCCCCCCC-CCCCcccceeeC
Q 030146 39 NSEGDALYALRRSLS-DPDNVLQSWDPTL-VNPCTWFHITCN 78 (182)
Q Consensus 39 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~~-~~~c~w~~v~c~ 78 (182)
++|+++|++||+.+. ++.+.+.+|+... .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 479999999999998 4668899998764 799999999995
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.61 E-value=3.7e-09 Score=83.70 Aligned_cols=100 Identities=31% Similarity=0.347 Sum_probs=80.4
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEcc-CCcCCccCcccccCCCCCceEe
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY-NNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls-~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
...++|+|..|+|+...+..|..+++|+.|||++|.++..-|+.|.++.++..|-+. +|+|+...-..|+++.+++.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 467899999999997777889999999999999999998889999999988777654 4999944334578888888888
Q ss_pred cccccCCCCCcccccCCCCCc
Q 030146 160 LNDNRLTGQIPRELVGISSLK 180 (182)
Q Consensus 160 L~~N~l~g~~p~~~~~l~~L~ 180 (182)
+.-|.+.-...+.|..+++|.
T Consensus 147 lNan~i~Cir~~al~dL~~l~ 167 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLS 167 (498)
T ss_pred cChhhhcchhHHHHHHhhhcc
Confidence 877777755556666666653
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.59 E-value=5.7e-09 Score=87.28 Aligned_cols=83 Identities=36% Similarity=0.505 Sum_probs=64.7
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCc-ccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV-ELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
..++.|||++|++. ..|..+....++-.|++++|.+. .+|. -+.+++-|-+||||+|++. .+|+.+..+..|++|+
T Consensus 103 ~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLK 179 (1255)
T ss_pred ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhh
Confidence 45778888888887 67787887888888888888888 4453 3567777888888888887 6777788888888888
Q ss_pred cccccCC
Q 030146 160 LNDNRLT 166 (182)
Q Consensus 160 L~~N~l~ 166 (182)
|++|++.
T Consensus 180 Ls~NPL~ 186 (1255)
T KOG0444|consen 180 LSNNPLN 186 (1255)
T ss_pred cCCChhh
Confidence 8888775
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.56 E-value=2.4e-09 Score=85.04 Aligned_cols=95 Identities=38% Similarity=0.605 Sum_probs=64.7
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCC----------------------ccc-CCCCCCCEEEccC
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIP----------------------VEL-GNLKSLISLDLYN 138 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p----------------------~~~-~~l~~L~~L~ls~ 138 (182)
+++.+|...|-++ .+|+.++.+.+|+.|+++.|++. ..| .+. ..+.++..||+.+
T Consensus 184 ~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 184 RLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD 261 (565)
T ss_pred HHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc
Confidence 3445555555555 56777777777777777777765 334 222 2456777788888
Q ss_pred CcCCccCcccccCCCCCceEecccccCCCCCcccccCCCCCcc
Q 030146 139 NNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 139 n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~ 181 (182)
|+++ ++|+.+.-+.+|.+||+++|.++ .+|..++++ .|+.
T Consensus 262 Nklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~ 301 (565)
T KOG0472|consen 262 NKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKF 301 (565)
T ss_pred cccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeee
Confidence 8887 77887777788888888888887 667777777 5554
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.53 E-value=1e-08 Score=88.40 Aligned_cols=99 Identities=31% Similarity=0.416 Sum_probs=72.7
Q ss_pred CCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
..+++.|+|++|.+.......+.++..|+.|++++|+++ .+|..+..+..|++|...+|++. .+| .+..++.|+++|
T Consensus 382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD 458 (1081)
T ss_pred ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence 457888888888887444445677888888888888888 67777888888888888888887 667 677888888888
Q ss_pred cccccCCC-CCcccccCCCCCccC
Q 030146 160 LNDNRLTG-QIPRELVGISSLKVV 182 (182)
Q Consensus 160 L~~N~l~g-~~p~~~~~l~~L~~L 182 (182)
++.|+++. .+|.... .++|++|
T Consensus 459 lS~N~L~~~~l~~~~p-~p~LkyL 481 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPEALP-SPNLKYL 481 (1081)
T ss_pred cccchhhhhhhhhhCC-Cccccee
Confidence 88888873 3443322 2566554
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.43 E-value=7e-09 Score=89.43 Aligned_cols=99 Identities=31% Similarity=0.477 Sum_probs=86.8
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
..++.+.+.+|.+++...+.+.++.+|+.|++++|++.......+.++..|++|++|+|+++ .+|+.+..++.|++|..
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 35778899999999988888999999999999999999444455788999999999999999 88999999999999999
Q ss_pred ccccCCCCCcccccCCCCCccC
Q 030146 161 NDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~L 182 (182)
.+|++. ..| .+..++.|+.+
T Consensus 438 hsN~l~-~fP-e~~~l~qL~~l 457 (1081)
T KOG0618|consen 438 HSNQLL-SFP-ELAQLPQLKVL 457 (1081)
T ss_pred cCCcee-ech-hhhhcCcceEE
Confidence 999998 777 78888888753
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.40 E-value=9.3e-07 Score=80.72 Aligned_cols=97 Identities=22% Similarity=0.303 Sum_probs=62.2
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++.++.+. .++..+..+++|+.++++++.....+| .+..+++|+.|++++|.....+|..+.++++|+.|++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 35666777777666 455556667777777777665444555 3666777777777776554567777777777777777
Q ss_pred ccccCCCCCcccccCCCCCc
Q 030146 161 NDNRLTGQIPRELVGISSLK 180 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~ 180 (182)
++|...+.+|..+ ++++|+
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~ 707 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLY 707 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCC
Confidence 7755444666543 344443
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.35 E-value=3.4e-07 Score=79.64 Aligned_cols=63 Identities=29% Similarity=0.475 Sum_probs=39.0
Q ss_pred CCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecccccCCCCCcccc
Q 030146 106 HLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPREL 173 (182)
Q Consensus 106 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 173 (182)
+|+.|++++|.+.+ +|.. ..+|+.|++++|+++ .+|+.+.++++|+.+++++|++++..|..+
T Consensus 403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 34444444444442 3322 234556666666666 567777777888888888888887766655
No 23
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.33 E-value=5.1e-07 Score=50.06 Aligned_cols=36 Identities=42% Similarity=0.689 Sum_probs=22.5
Q ss_pred CCCEEEccCCcCCccCcccccCCCCCceEecccccCC
Q 030146 130 SLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLT 166 (182)
Q Consensus 130 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 166 (182)
+|++|++++|+++ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4666666666666 45555666677777777777665
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.33 E-value=1.5e-07 Score=83.09 Aligned_cols=100 Identities=30% Similarity=0.417 Sum_probs=82.7
Q ss_pred CEEEEEcCCCC--CCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 82 RVTRLDLGNSN--LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 82 ~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
.+++|-+.+|. +.......|..++.|+.||+++|.-.+.+|..++.+-+|++|++++..+. .+|..+.++..|.+||
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 57777777775 44233344778999999999998877789999999999999999999999 8999999999999999
Q ss_pred cccccCCCCCcccccCCCCCccC
Q 030146 160 LNDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 160 L~~N~l~g~~p~~~~~l~~L~~L 182 (182)
+..+.....+|.....+.+|++|
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred cccccccccccchhhhcccccEE
Confidence 99887665667777778888865
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.32 E-value=1.5e-06 Score=79.33 Aligned_cols=98 Identities=24% Similarity=0.330 Sum_probs=61.3
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCC---------------------CCEEEccCC
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKS---------------------LISLDLYNN 139 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~---------------------L~~L~ls~n 139 (182)
..++.|++++|.....+|..+.++++|+.|++++|..-+.+|..+ .+++ |+.|++++|
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT 856 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC
Confidence 357778888887666778888888888888888765433455433 3344 445555555
Q ss_pred cCCccCcccccCCCCCceEecccccCCCCCcccccCCCCCc
Q 030146 140 NISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLK 180 (182)
Q Consensus 140 ~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~ 180 (182)
.+. .+|..+..+++|+.|++++|+-...+|..+..+++|+
T Consensus 857 ~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~ 896 (1153)
T PLN03210 857 GIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLE 896 (1153)
T ss_pred CCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCC
Confidence 555 4566666677777777766332224555555555554
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.28 E-value=8.4e-06 Score=71.13 Aligned_cols=39 Identities=15% Similarity=0.096 Sum_probs=25.6
Q ss_pred hhhhcCCchHHHHHHHHHHhcCCCCC---CCCCCCCCCCCCCc
Q 030146 32 LVAVASGNSEGDALYALRRSLSDPDN---VLQSWDPTLVNPCT 71 (182)
Q Consensus 32 ~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~w~~~~~~~c~ 71 (182)
.+......++...+.++.+.+..|.. .-..|+.. .++|.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~-~~fc~ 96 (754)
T PRK15370 55 HPPETASPEEIKSKFECLRMLAFPAYADNIQYSRGGA-DQYCI 96 (754)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCchhhccccccCCC-Ccccc
Confidence 55666677899999999988876542 22346544 45663
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.25 E-value=5e-06 Score=72.50 Aligned_cols=77 Identities=32% Similarity=0.512 Sum_probs=38.8
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCC--------------------CCCcccCCCCCCCEEEccCCcC
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG--------------------TIPVELGNLKSLISLDLYNNNI 141 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------------~~p~~~~~l~~L~~L~ls~n~l 141 (182)
+++.|++++|.++ .+|..+. .+|+.|++++|.++. .+|..+. .+|+.|++++|++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L 274 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLP--SALQSLDLFHNKI 274 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccCChhhhccccEEECcCCccCcCChhHh--CCCCEEECcCCcc
Confidence 4556666666665 3343332 345555555555542 2333222 2455556665555
Q ss_pred CccCcccccCCCCCceEecccccCC
Q 030146 142 SGKIPPSLAKLKSLVFLRLNDNRLT 166 (182)
Q Consensus 142 ~~~~p~~~~~l~~L~~L~L~~N~l~ 166 (182)
+ .+|+.+. ++|+.|++++|+++
T Consensus 275 ~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 275 S-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred C-ccccccC--CCCcEEECCCCccc
Confidence 5 3444332 35666666666665
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.23 E-value=3.7e-07 Score=72.60 Aligned_cols=78 Identities=26% Similarity=0.235 Sum_probs=41.1
Q ss_pred ccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecccccCCCCCcccccCCCC
Q 030146 101 LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISS 178 (182)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~ 178 (182)
|..+++|+++++++|.+++.-+..|.+..++++|.|..|++.......|.++..|+.|+|++|+++-.-|..|..+.+
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 555555555555555555555555555555555555555555333334555555555555555555444444443333
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.22 E-value=1.2e-07 Score=78.39 Aligned_cols=80 Identities=34% Similarity=0.578 Sum_probs=44.8
Q ss_pred EEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEeccc
Q 030146 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLND 162 (182)
Q Consensus 83 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (182)
+..+|.+.|++. .+|..++.+..|+.++++.|.+. .+|.++..++ |..||++.|++. .+|-.|.+|+.|++|-|.+
T Consensus 168 l~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 168 LAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred HHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeecc
Confidence 334444555544 34445555555555555555555 3444444333 556666666666 5666666666666666666
Q ss_pred ccCC
Q 030146 163 NRLT 166 (182)
Q Consensus 163 N~l~ 166 (182)
|++.
T Consensus 244 NPLq 247 (722)
T KOG0532|consen 244 NPLQ 247 (722)
T ss_pred CCCC
Confidence 6665
No 30
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.22 E-value=1.3e-07 Score=65.06 Aligned_cols=88 Identities=25% Similarity=0.369 Sum_probs=73.4
Q ss_pred CCCEEEEEcCCCCCCcccccccc-CCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceE
Q 030146 80 DNRVTRLDLGNSNLSGRLVPELG-KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (182)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 158 (182)
.-+++.+++++|.+. ..|+.|. .++.++.+++.+|.+. .+|.++..++.|+.+++++|.+. ..|..+..+.++..|
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 346889999999999 4555554 4568999999999999 78888999999999999999998 788888888889999
Q ss_pred ecccccCCCCCcc
Q 030146 159 RLNDNRLTGQIPR 171 (182)
Q Consensus 159 ~L~~N~l~g~~p~ 171 (182)
+...|... .+|-
T Consensus 129 ds~~na~~-eid~ 140 (177)
T KOG4579|consen 129 DSPENARA-EIDV 140 (177)
T ss_pred cCCCCccc-cCcH
Confidence 88888776 5553
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.21 E-value=7.2e-07 Score=72.29 Aligned_cols=96 Identities=36% Similarity=0.605 Sum_probs=75.8
Q ss_pred CCEEEEEcCCCCCCccccccccCCC-CCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLE-HLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
..++.+++.+|.+. .+++....+. +|+.++++.|.+. .+|..+..++.|+.|++++|++. .+|...+..+.|+.++
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 45888999999988 5666666664 8999999999998 56667888999999999999998 6777666788899999
Q ss_pred cccccCCCCCcccccCCCCCc
Q 030146 160 LNDNRLTGQIPRELVGISSLK 180 (182)
Q Consensus 160 L~~N~l~g~~p~~~~~l~~L~ 180 (182)
+++|+++ .+|..+.....|+
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~ 212 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALE 212 (394)
T ss_pred ccCCccc-cCchhhhhhhhhh
Confidence 9999988 7777543333343
No 32
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.18 E-value=2.3e-06 Score=74.58 Aligned_cols=47 Identities=28% Similarity=0.410 Sum_probs=26.4
Q ss_pred CCCEEEccCCcCCccCcccccCCCCCceEecccccCCCCCcccccCCCCCcc
Q 030146 130 SLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 130 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~ 181 (182)
+|+.|++++|+++ .+|... .+|+.|++++|+++ .+|..++++++|+.
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~ 449 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETT 449 (788)
T ss_pred CCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCe
Confidence 3444455555544 234321 34566667777766 67777777776654
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.17 E-value=2.7e-07 Score=72.25 Aligned_cols=100 Identities=31% Similarity=0.427 Sum_probs=53.4
Q ss_pred CEEEEEcCCCCCCc----cccccccCC-CCCCeeeccccccCCC----CCcccCCCCCCCEEEccCCcCCcc----Cccc
Q 030146 82 RVTRLDLGNSNLSG----RLVPELGKL-EHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNISGK----IPPS 148 (182)
Q Consensus 82 ~l~~L~l~~n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~ 148 (182)
+++.|++++|.+.+ .+...+..+ ++|+.+++++|.+++. ++..+..+++|++|++++|.+++. ++..
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 36666666666552 112233444 5666666666666632 222344555677777777766632 2223
Q ss_pred ccCCCCCceEecccccCCCC----CcccccCCCCCcc
Q 030146 149 LAKLKSLVFLRLNDNRLTGQ----IPRELVGISSLKV 181 (182)
Q Consensus 149 ~~~l~~L~~L~L~~N~l~g~----~p~~~~~l~~L~~ 181 (182)
+..+++|+.|++++|.+++. ++..+..+++|++
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~ 225 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV 225 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCE
Confidence 34455777777777766532 2233444555554
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.15 E-value=3.7e-07 Score=71.51 Aligned_cols=87 Identities=36% Similarity=0.453 Sum_probs=58.5
Q ss_pred CCEEEEEcCCCCCCcc----ccccccCCCCCCeeeccccccCCC----CCcccCCCCCCCEEEccCCcCCcc----Cccc
Q 030146 81 NRVTRLDLGNSNLSGR----LVPELGKLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNISGK----IPPS 148 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~ 148 (182)
.+++.+++++|.+++. ++..+..+++|+.|++++|.+++. ++..+...+.|+.|++++|.+.+. ++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 4678888888887732 233455667788888888887742 233344556788888888877643 2334
Q ss_pred ccCCCCCceEecccccCCC
Q 030146 149 LAKLKSLVFLRLNDNRLTG 167 (182)
Q Consensus 149 ~~~l~~L~~L~L~~N~l~g 167 (182)
+..+++|++|++++|++++
T Consensus 217 ~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred hcccCCCCEEecCCCcCch
Confidence 5567778888888887764
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.15 E-value=3.1e-07 Score=70.96 Aligned_cols=94 Identities=29% Similarity=0.402 Sum_probs=61.6
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCc---------------
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP--------------- 146 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p--------------- 146 (182)
.++++|+++|.++ .+..++.-++.++.|++++|++. .+. .+..+++|+.||+++|.++ .+.
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 3567888888887 56666777788888888888887 333 3677788888888888665 111
Q ss_pred -------ccccCCCCCceEecccccCCCCCc--ccccCCCCCc
Q 030146 147 -------PSLAKLKSLVFLRLNDNRLTGQIP--RELVGISSLK 180 (182)
Q Consensus 147 -------~~~~~l~~L~~L~L~~N~l~g~~p--~~~~~l~~L~ 180 (182)
.+++.+-+|..||+++|++. .+. ..++++|-|+
T Consensus 361 ~N~iE~LSGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE 402 (490)
T KOG1259|consen 361 QNKIETLSGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLE 402 (490)
T ss_pred hhhHhhhhhhHhhhhheeccccccchh-hHHHhcccccccHHH
Confidence 22334556677777777765 221 3456666554
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.13 E-value=8.5e-08 Score=79.21 Aligned_cols=90 Identities=27% Similarity=0.450 Sum_probs=53.1
Q ss_pred EEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecccccC
Q 030146 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRL 165 (182)
Q Consensus 86 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l 165 (182)
+.+..|.+. .+|..+.++..|.+++++.|+++ ..|..+..++ |+.|-+++|+++ .+|+.++.+..|..||.+.|.+
T Consensus 103 liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 103 LILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEI 178 (722)
T ss_pred HHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhh
Confidence 334444444 45555666666666666666666 4555555555 666666666666 5666666556666666666666
Q ss_pred CCCCcccccCCCCCc
Q 030146 166 TGQIPRELVGISSLK 180 (182)
Q Consensus 166 ~g~~p~~~~~l~~L~ 180 (182)
. .+|..++.+.+|+
T Consensus 179 ~-slpsql~~l~slr 192 (722)
T KOG0532|consen 179 Q-SLPSQLGYLTSLR 192 (722)
T ss_pred h-hchHHhhhHHHHH
Confidence 5 5555555555554
No 37
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=4.4e-08 Score=67.32 Aligned_cols=94 Identities=29% Similarity=0.382 Sum_probs=71.3
Q ss_pred EEEEEcCCCCCCcccc---ccccCCCCCCeeeccccccCCCCCcccC-CCCCCCEEEccCCcCCccCcccccCCCCCceE
Q 030146 83 VTRLDLGNSNLSGRLV---PELGKLEHLQYLELYKNNIQGTIPVELG-NLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (182)
Q Consensus 83 l~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 158 (182)
...++|+.+.+. .++ -.+....+|...++++|.+. ..|+.+. ..+..+.+++++|.++ .+|+.+..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 445666666654 222 23445577888999999999 4555554 4558899999999999 789999999999999
Q ss_pred ecccccCCCCCcccccCCCCCc
Q 030146 159 RLNDNRLTGQIPRELVGISSLK 180 (182)
Q Consensus 159 ~L~~N~l~g~~p~~~~~l~~L~ 180 (182)
+++.|++. ..|+.+..+.+|.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred ccccCccc-cchHHHHHHHhHH
Confidence 99999998 7787776665553
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.08 E-value=3.7e-06 Score=46.55 Aligned_cols=36 Identities=47% Similarity=0.658 Sum_probs=23.3
Q ss_pred CCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCC
Q 030146 106 HLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142 (182)
Q Consensus 106 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~ 142 (182)
+|+.|++++|.++ .+|..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5667777777776 45555677777777777777666
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.98 E-value=1.9e-06 Score=69.82 Aligned_cols=95 Identities=32% Similarity=0.519 Sum_probs=74.7
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
+++.+++++|.+. .+|..+..++.|+.|+++.|.+. .+|......+.|+.+++++|+++ .+|........|+++.++
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 7999999999998 56667889999999999999999 56665557889999999999999 777766666678888888
Q ss_pred cccCCCCCcccccCCCCCc
Q 030146 162 DNRLTGQIPRELVGISSLK 180 (182)
Q Consensus 162 ~N~l~g~~p~~~~~l~~L~ 180 (182)
+|+.. ..+..+.++.++.
T Consensus 218 ~N~~~-~~~~~~~~~~~l~ 235 (394)
T COG4886 218 NNSII-ELLSSLSNLKNLS 235 (394)
T ss_pred CCcce-ecchhhhhccccc
Confidence 88543 3455555555443
No 40
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.90 E-value=1.8e-05 Score=57.89 Aligned_cols=98 Identities=28% Similarity=0.281 Sum_probs=73.7
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcc--cccCCCCCceEe
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP--SLAKLKSLVFLR 159 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~--~~~~l~~L~~L~ 159 (182)
....+||++|.+... +.|..++.|.+|.+..|+++..-|.--..+++|+.|.+.+|.+. .+.+ .+..++.|+.|.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence 356789999998743 56788899999999999999666654556778999999999887 3322 356788999999
Q ss_pred cccccCCCC---CcccccCCCCCccC
Q 030146 160 LNDNRLTGQ---IPRELVGISSLKVV 182 (182)
Q Consensus 160 L~~N~l~g~---~p~~~~~l~~L~~L 182 (182)
+-+|+++.. ---.+..+|+|+.|
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~L 145 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTL 145 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEe
Confidence 999988731 11356777777654
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.89 E-value=1.5e-06 Score=67.28 Aligned_cols=86 Identities=31% Similarity=0.420 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCC---------------------cccCCCCCCCEEEccCC
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIP---------------------VELGNLKSLISLDLYNN 139 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p---------------------~~~~~l~~L~~L~ls~n 139 (182)
+.++.+++++|.+.. + +.+..+++|+.||+++|.++.... +.+..+-+|..||+++|
T Consensus 307 Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 307 PKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSN 384 (490)
T ss_pred cceeEEeccccceee-e-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheecccccc
Confidence 578899999999873 2 347788899999999988752110 12334556788899999
Q ss_pred cCCcc-CcccccCCCCCceEecccccCCCC
Q 030146 140 NISGK-IPPSLAKLKSLVFLRLNDNRLTGQ 168 (182)
Q Consensus 140 ~l~~~-~p~~~~~l~~L~~L~L~~N~l~g~ 168 (182)
++... -...++++|.|+.+.|.+|++.+.
T Consensus 385 ~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 385 QIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred chhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 88731 124589999999999999999843
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.71 E-value=1.8e-05 Score=70.20 Aligned_cols=98 Identities=26% Similarity=0.355 Sum_probs=76.3
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccc--cCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNN--IQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
.++.+.+.+|.+. .++... ..+.|++|-+..|. +....+..|..++.|..||+++|.=-+.+|+.++.+-+|++|+
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 4566666677665 333332 23478899999986 4433344588899999999999876679999999999999999
Q ss_pred cccccCCCCCcccccCCCCCccC
Q 030146 160 LNDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 160 L~~N~l~g~~p~~~~~l~~L~~L 182 (182)
+++..+. .+|..+++++.|.+|
T Consensus 602 L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred ccCCCcc-ccchHHHHHHhhhee
Confidence 9999998 899999999888765
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.50 E-value=4.4e-05 Score=62.50 Aligned_cols=83 Identities=35% Similarity=0.366 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
...++.+++.+|.+... ...+..+++|+.+++++|.++... .+..++.|+.|++++|.+. .+ ..+..+..|+.++
T Consensus 94 ~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLLD 168 (414)
T ss_pred ccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hc-cCCccchhhhccc
Confidence 35688899999998843 333677889999999999998543 3567777999999999987 33 3456688899999
Q ss_pred cccccCCC
Q 030146 160 LNDNRLTG 167 (182)
Q Consensus 160 L~~N~l~g 167 (182)
+++|.++.
T Consensus 169 l~~n~i~~ 176 (414)
T KOG0531|consen 169 LSYNRIVD 176 (414)
T ss_pred CCcchhhh
Confidence 99998873
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.47 E-value=3.5e-06 Score=71.88 Aligned_cols=79 Identities=29% Similarity=0.396 Sum_probs=38.6
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcc-cCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.++.|+|++|++... +.+..+++|+.||+++|.+. .+|.. ...+. |+.|.+.+|.++. + ..+.++.+|+.||+
T Consensus 188 ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t-L-~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT-L-RGIENLKSLYGLDL 261 (1096)
T ss_pred Hhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh-h-hhHHhhhhhhccch
Confidence 344555555555432 24445555555555555555 23321 11222 5555555555541 1 23455666666666
Q ss_pred ccccCC
Q 030146 161 NDNRLT 166 (182)
Q Consensus 161 ~~N~l~ 166 (182)
++|-+.
T Consensus 262 syNll~ 267 (1096)
T KOG1859|consen 262 SYNLLS 267 (1096)
T ss_pred hHhhhh
Confidence 666655
No 45
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.34 E-value=0.00035 Score=51.25 Aligned_cols=94 Identities=27% Similarity=0.381 Sum_probs=62.8
Q ss_pred EEEEcCCCCCCcccccccc-CCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEeccc
Q 030146 84 TRLDLGNSNLSGRLVPELG-KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLND 162 (182)
Q Consensus 84 ~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (182)
+++++.+..+.. + ..++ -+.....+|+++|.+.. + ..+..++.|.+|.+++|+++..-|..-.-+++|..|.|.+
T Consensus 22 ~e~~LR~lkip~-i-enlg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIPV-I-ENLGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccc-h-hhccccccccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 345566655441 1 1111 13456788999999873 2 3577899999999999999955454444567899999999
Q ss_pred ccCC--CCCcccccCCCCCccC
Q 030146 163 NRLT--GQIPRELVGISSLKVV 182 (182)
Q Consensus 163 N~l~--g~~p~~~~~l~~L~~L 182 (182)
|++. |.+ ..+..+|+|++|
T Consensus 98 Nsi~~l~dl-~pLa~~p~L~~L 118 (233)
T KOG1644|consen 98 NSIQELGDL-DPLASCPKLEYL 118 (233)
T ss_pred cchhhhhhc-chhccCCcccee
Confidence 9987 232 235566666653
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.30 E-value=2e-05 Score=67.47 Aligned_cols=92 Identities=26% Similarity=0.297 Sum_probs=65.7
Q ss_pred EEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEeccc
Q 030146 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLND 162 (182)
Q Consensus 83 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (182)
+..++++.|.+. .....+.-++.++.|+|++|+++.. +.+..+++|++||+++|.++ .+|..-..-..|+.|++.+
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence 566777888877 5566777788899999999998844 26788899999999999988 5665321123488899999
Q ss_pred ccCCCCCcccccCCCCCc
Q 030146 163 NRLTGQIPRELVGISSLK 180 (182)
Q Consensus 163 N~l~g~~p~~~~~l~~L~ 180 (182)
|-++ ++ ..+.++.+|+
T Consensus 242 N~l~-tL-~gie~LksL~ 257 (1096)
T KOG1859|consen 242 NALT-TL-RGIENLKSLY 257 (1096)
T ss_pred cHHH-hh-hhHHhhhhhh
Confidence 8887 32 2344555544
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=5.6e-05 Score=61.09 Aligned_cols=64 Identities=27% Similarity=0.381 Sum_probs=35.0
Q ss_pred CCCCCCeeeccccccCCCC-CcccCCCCCCCEEEccCCcCCcc-Cccc-----ccCCCCCceEecccccCC
Q 030146 103 KLEHLQYLELYKNNIQGTI-PVELGNLKSLISLDLYNNNISGK-IPPS-----LAKLKSLVFLRLNDNRLT 166 (182)
Q Consensus 103 ~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~ls~n~l~~~-~p~~-----~~~l~~L~~L~L~~N~l~ 166 (182)
.+..|+.|+|++|.+-... -...+.++.|..|+++.+++... .|+. ...+++|++|++..|++.
T Consensus 244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 3455666666666554211 12345566666666666665531 2222 234677777777777764
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=8.6e-05 Score=57.58 Aligned_cols=86 Identities=29% Similarity=0.281 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCCCCc--cccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcc-cccCCCCCce
Q 030146 81 NRVTRLDLGNSNLSG--RLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP-SLAKLKSLVF 157 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~ 157 (182)
.+|+++||.+|.++. .+..-+.++|.|+.|+++.|.+...+...-....+|+.+-+.+..+.+.-.. .+..+|.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 368889999999874 3334467899999999999998865543324667888888888777654333 4567888888
Q ss_pred EecccccCC
Q 030146 158 LRLNDNRLT 166 (182)
Q Consensus 158 L~L~~N~l~ 166 (182)
++++.|++.
T Consensus 151 lHmS~N~~r 159 (418)
T KOG2982|consen 151 LHMSDNSLR 159 (418)
T ss_pred hhhccchhh
Confidence 888888543
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.23 E-value=0.00016 Score=54.70 Aligned_cols=97 Identities=27% Similarity=0.305 Sum_probs=62.4
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeecccc--ccCCCCCcccCCCCCCCEEEccCCcCCccCcccc---cCCCCCc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKN--NIQGTIPVELGNLKSLISLDLYNNNISGKIPPSL---AKLKSLV 156 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~---~~l~~L~ 156 (182)
.++.+++.+..++.. ..+..+++|++|.++.| ++.+.++.....+++|++++++.|+++. ++.+ ..+.+|.
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLK 119 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchh
Confidence 345555555555422 45667889999999999 6665555556667999999999998873 3433 4556777
Q ss_pred eEecccccCCCCCc---ccccCCCCCccC
Q 030146 157 FLRLNDNRLTGQIP---RELVGISSLKVV 182 (182)
Q Consensus 157 ~L~L~~N~l~g~~p---~~~~~l~~L~~L 182 (182)
.|++..|..++.-- ..|.-+++|++|
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~L 148 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYL 148 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccc
Confidence 88888877664110 234445555543
No 50
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=7.7e-06 Score=62.68 Aligned_cols=95 Identities=27% Similarity=0.264 Sum_probs=55.1
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcc--cccCCCCCceEe
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP--SLAKLKSLVFLR 159 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~--~~~~l~~L~~L~ 159 (182)
.++.|++-|+++.+. .....|+.|+.|.|+-|.++..- .+..|++|++|+|..|.|. .+.+ .+.++++|+.|-
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence 344555555555432 22345667777777777776432 2566777777777777666 2322 245677777777
Q ss_pred cccccCCCCCcc-----cccCCCCCcc
Q 030146 160 LNDNRLTGQIPR-----ELVGISSLKV 181 (182)
Q Consensus 160 L~~N~l~g~~p~-----~~~~l~~L~~ 181 (182)
|..|+-.|.-+. .+..+|+|+.
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkK 121 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKK 121 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchh
Confidence 777776655442 3344555544
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.12 E-value=0.00034 Score=53.01 Aligned_cols=76 Identities=20% Similarity=0.255 Sum_probs=53.0
Q ss_pred ccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCC--cCCccCcccccCCCCCceEecccccCCCCCcccccCC
Q 030146 99 PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN--NISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGI 176 (182)
Q Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n--~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l 176 (182)
.....+..|+.+.+.+..++.. ..+..+++|+.|.++.| ++.+.++.....+++|+++++++|++. +++.+..+
T Consensus 37 gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl 112 (260)
T KOG2739|consen 37 GLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPL 112 (260)
T ss_pred cccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchh
Confidence 3334455666777766666632 24667889999999999 666666666667799999999999987 24444433
Q ss_pred CC
Q 030146 177 SS 178 (182)
Q Consensus 177 ~~ 178 (182)
+.
T Consensus 113 ~~ 114 (260)
T KOG2739|consen 113 KE 114 (260)
T ss_pred hh
Confidence 33
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.08 E-value=0.00016 Score=59.25 Aligned_cols=81 Identities=32% Similarity=0.431 Sum_probs=63.4
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
.+..+.+..|.+.. +-..+..+.+|+.+++..|.+.. +...+..+++|++|++++|.++.. ..+..++.|+.|++.
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheec
Confidence 34555677777763 33447788999999999999984 443377899999999999999843 346678889999999
Q ss_pred cccCC
Q 030146 162 DNRLT 166 (182)
Q Consensus 162 ~N~l~ 166 (182)
+|.++
T Consensus 149 ~N~i~ 153 (414)
T KOG0531|consen 149 GNLIS 153 (414)
T ss_pred cCcch
Confidence 99998
No 53
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00013 Score=59.11 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCCCCcccc--ccccCCCCCCeeeccccccC
Q 030146 81 NRVTRLDLGNSNLSGRLV--PELGKLEHLQYLELYKNNIQ 118 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~ 118 (182)
.+++.|||++|-+....+ .-..++++|+.|+++.|++.
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS 185 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence 345566666655442111 12234555666666665554
No 54
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.65 E-value=0.0006 Score=31.70 Aligned_cols=19 Identities=42% Similarity=0.690 Sum_probs=9.4
Q ss_pred CceEecccccCCCCCccccc
Q 030146 155 LVFLRLNDNRLTGQIPRELV 174 (182)
Q Consensus 155 L~~L~L~~N~l~g~~p~~~~ 174 (182)
|++||+++|+++ .+|+.|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 445555555555 4444443
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.51 E-value=0.00063 Score=59.19 Aligned_cols=92 Identities=22% Similarity=0.296 Sum_probs=56.6
Q ss_pred eeeCCCCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCC-CCCcccCCCCCCCEEEccCCcCCccC--c----c
Q 030146 75 ITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG-TIPVELGNLKSLISLDLYNNNISGKI--P----P 147 (182)
Q Consensus 75 v~c~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~--p----~ 147 (182)
.-|...+++..||+++.+++.. ..++.+++|+.|.+.+-.+.. ..-..+..+++|+.||+|........ . +
T Consensus 167 ~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYle 244 (699)
T KOG3665|consen 167 QLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLE 244 (699)
T ss_pred HHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHH
Confidence 3455666777777777777633 456677777777666655542 11124556788888888876554211 1 1
Q ss_pred cccCCCCCceEecccccCCCC
Q 030146 148 SLAKLKSLVFLRLNDNRLTGQ 168 (182)
Q Consensus 148 ~~~~l~~L~~L~L~~N~l~g~ 168 (182)
.-..+|.|+.||.+++.+.+.
T Consensus 245 c~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 245 CGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred hcccCccccEEecCCcchhHH
Confidence 123477888888887766643
No 56
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.28 E-value=0.0016 Score=30.18 Aligned_cols=20 Identities=45% Similarity=0.678 Sum_probs=11.9
Q ss_pred CCEEEccCCcCCccCcccccC
Q 030146 131 LISLDLYNNNISGKIPPSLAK 151 (182)
Q Consensus 131 L~~L~ls~n~l~~~~p~~~~~ 151 (182)
|++|++++|+++ .+|+.|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 566666666666 55555443
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.04 E-value=0.0024 Score=55.60 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=58.0
Q ss_pred CCCEEEEEcCCCCCCcc-ccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCc-cCcccccCCCCCce
Q 030146 80 DNRVTRLDLGNSNLSGR-LVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG-KIPPSLAKLKSLVF 157 (182)
Q Consensus 80 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~ 157 (182)
.+.+++|.+.+-.+... ......++++|..||+++..++.. ..++.+++|+.|.+.+=.+.. ..-..+.+|++|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 45678888877766432 223345678888889888888743 567788888888776655542 11124567899999
Q ss_pred EecccccCC
Q 030146 158 LRLNDNRLT 166 (182)
Q Consensus 158 L~L~~N~l~ 166 (182)
||+|.....
T Consensus 225 LDIS~~~~~ 233 (699)
T KOG3665|consen 225 LDISRDKNN 233 (699)
T ss_pred eeccccccc
Confidence 999886654
No 58
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.93 E-value=0.00012 Score=54.97 Aligned_cols=84 Identities=26% Similarity=0.252 Sum_probs=72.1
Q ss_pred CCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
..+++.||++.|.+. .....|..++.+..++++.|.+. ..|..++....+..+++..|..+ ..|.+++..+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 568899999999876 34566777888999999999988 78888888888999999999888 7899999999999999
Q ss_pred cccccCC
Q 030146 160 LNDNRLT 166 (182)
Q Consensus 160 L~~N~l~ 166 (182)
+.+|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9998876
No 59
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.57 E-value=0.0041 Score=49.20 Aligned_cols=85 Identities=21% Similarity=0.273 Sum_probs=47.2
Q ss_pred CEEEEEcCCCCCCcc----ccccccCCCCCCeeeccccccCCC----CCcccCCCCCCCEEEccCCcCCccCcccc----
Q 030146 82 RVTRLDLGNSNLSGR----LVPELGKLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNISGKIPPSL---- 149 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~~p~~~---- 149 (182)
.++.+.+..|.+... ....+..+++|+.||+++|.++.. +...+..+++|+.++++++.+...-...+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 455566666655421 123355667777777777777532 23345566667777777766653322111
Q ss_pred -cCCCCCceEecccccCC
Q 030146 150 -AKLKSLVFLRLNDNRLT 166 (182)
Q Consensus 150 -~~l~~L~~L~L~~N~l~ 166 (182)
...++|+++.+.+|.++
T Consensus 266 ~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEIT 283 (382)
T ss_pred hccCCCCceeccCcchhH
Confidence 12456666666666655
No 60
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.30 E-value=0.0096 Score=47.18 Aligned_cols=63 Identities=21% Similarity=0.273 Sum_probs=33.5
Q ss_pred CCCCCeeeccccccCCC----CCcccCCCCCCCEEEccCCcCCcc----CcccccCCCCCceEecccccCC
Q 030146 104 LEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNISGK----IPPSLAKLKSLVFLRLNDNRLT 166 (182)
Q Consensus 104 l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 166 (182)
-+.|+.+....|++... +...+...+.|+.+.++.|.+... +-..+..+++|++|||.+|-|+
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 45566666666665421 111234445566666666655421 1123455677777777777665
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.95 E-value=0.086 Score=43.24 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=14.5
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeecccc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKN 115 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 115 (182)
.++.|.++++.--..+|..+. .+|+.|++++|
T Consensus 73 sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred CCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 456666655322123333221 34555555555
No 62
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.82 E-value=0.016 Score=25.01 Aligned_cols=13 Identities=46% Similarity=0.692 Sum_probs=4.8
Q ss_pred CCCEEEccCCcCC
Q 030146 130 SLISLDLYNNNIS 142 (182)
Q Consensus 130 ~L~~L~ls~n~l~ 142 (182)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3445555555443
No 63
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.28 E-value=0.00063 Score=51.16 Aligned_cols=79 Identities=22% Similarity=0.295 Sum_probs=66.2
Q ss_pred cccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecccccCCCCCcccccCCCCC
Q 030146 100 ELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSL 179 (182)
Q Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L 179 (182)
++..+..-+.||++.|++. .....+.-++.+..++++.|.+. .+|..++....++.+++..|+.+ ..|..++..+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4555667788999999987 44556777888999999999998 78999999889999999999988 889999998888
Q ss_pred cc
Q 030146 180 KV 181 (182)
Q Consensus 180 ~~ 181 (182)
++
T Consensus 114 k~ 115 (326)
T KOG0473|consen 114 KK 115 (326)
T ss_pred ch
Confidence 75
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.25 E-value=0.095 Score=35.17 Aligned_cols=93 Identities=14% Similarity=0.181 Sum_probs=33.5
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
.++.+.+.++ +.......|..+..++.+.+.. .+.......+..+++++.+++..+ +...-...|.+. .++.+.+.
T Consensus 36 ~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 36 SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 3555555553 3323333455555566666644 222122334555666666666543 331222334454 66666655
Q ss_pred cccCCCCCcccccCCCCC
Q 030146 162 DNRLTGQIPRELVGISSL 179 (182)
Q Consensus 162 ~N~l~g~~p~~~~~l~~L 179 (182)
. .+...-...|.++++|
T Consensus 112 ~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 112 S-NITKIEENAFKNCTKL 128 (129)
T ss_dssp T-B-SS----GGG-----
T ss_pred C-CccEECCccccccccC
Confidence 4 2332233344555554
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.23 E-value=0.1 Score=42.81 Aligned_cols=61 Identities=23% Similarity=0.293 Sum_probs=41.2
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCC-cCCccCccc
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN-NISGKIPPS 148 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n-~l~~~~p~~ 148 (182)
.+++.|+++++.++ .+| .+ ..+|+.|.++++.--..+|..+ ..+|+.|++++| .+. .+|+.
T Consensus 52 ~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~s 113 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPES 113 (426)
T ss_pred cCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccccc
Confidence 35788999999887 445 22 3469999998744333566544 357899999988 454 55543
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.10 E-value=0.11 Score=34.78 Aligned_cols=79 Identities=15% Similarity=0.168 Sum_probs=47.2
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
+++.+.+.. .+.......|..++.|+.+.+..+ +.......+..+..++.+.+.+ .+.......|..+++|+.+++.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 577788774 455444566888889999999875 5544445677887899999976 4432333457778899999987
Q ss_pred cc
Q 030146 162 DN 163 (182)
Q Consensus 162 ~N 163 (182)
.+
T Consensus 90 ~~ 91 (129)
T PF13306_consen 90 SN 91 (129)
T ss_dssp TT
T ss_pred cc
Confidence 65
No 67
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.59 E-value=0.065 Score=25.58 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=9.5
Q ss_pred CCCceEecccccCCCCCcc
Q 030146 153 KSLVFLRLNDNRLTGQIPR 171 (182)
Q Consensus 153 ~~L~~L~L~~N~l~g~~p~ 171 (182)
++|+.|+|++|+++ .+|+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 44555555555555 4443
No 68
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.59 E-value=0.065 Score=25.58 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=9.5
Q ss_pred CCCceEecccccCCCCCcc
Q 030146 153 KSLVFLRLNDNRLTGQIPR 171 (182)
Q Consensus 153 ~~L~~L~L~~N~l~g~~p~ 171 (182)
++|+.|+|++|+++ .+|+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 44555555555555 4443
No 69
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.15 E-value=0.026 Score=44.20 Aligned_cols=63 Identities=32% Similarity=0.345 Sum_probs=44.3
Q ss_pred CCCCCeeeccccccCCC--CCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecccccCC
Q 030146 104 LEHLQYLELYKNNIQGT--IPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLT 166 (182)
Q Consensus 104 l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 166 (182)
.+.++.+|+.+|.++.. +..-+.+++.|++|+++.|.+...+-..--.+.+|+.|-|.+..+.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS 134 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence 56788899999998742 3334568899999999999987433222134567888888776554
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.55 E-value=0.075 Score=41.22 Aligned_cols=41 Identities=29% Similarity=0.416 Sum_probs=22.5
Q ss_pred cCCCCCCeeeccccccCCCCCcc----cCCCCCCCEEEccCCcCC
Q 030146 102 GKLEHLQYLELYKNNIQGTIPVE----LGNLKSLISLDLYNNNIS 142 (182)
Q Consensus 102 ~~l~~L~~L~l~~n~l~~~~p~~----~~~l~~L~~L~ls~n~l~ 142 (182)
..+++|+.++++.|.+....|.. +..-+.|++|.+++|.+.
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 34566666666666665444433 333455666666666554
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.81 E-value=0.0085 Score=46.40 Aligned_cols=74 Identities=23% Similarity=0.266 Sum_probs=55.1
Q ss_pred CCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecccccCCCCCcc--cccCCCCCcc
Q 030146 104 LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPR--ELVGISSLKV 181 (182)
Q Consensus 104 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~--~~~~l~~L~~ 181 (182)
+.+.++|+.-++.++.. .-...++.|+.|.|+-|+++.. ..+..+++|+.|.|..|.+. .+-+ -+.++|+|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence 44567778888887743 2356789999999999999843 44788999999999999987 4432 2457777765
Q ss_pred C
Q 030146 182 V 182 (182)
Q Consensus 182 L 182 (182)
|
T Consensus 93 L 93 (388)
T KOG2123|consen 93 L 93 (388)
T ss_pred H
Confidence 4
No 72
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.61 E-value=0.012 Score=45.96 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=18.6
Q ss_pred CCCCCEEEccCCc-CCccCcccccCCCCCceEeccccc
Q 030146 128 LKSLISLDLYNNN-ISGKIPPSLAKLKSLVFLRLNDNR 164 (182)
Q Consensus 128 l~~L~~L~ls~n~-l~~~~p~~~~~l~~L~~L~L~~N~ 164 (182)
+++|.+|||++|. ++...-..|..++.|++|.++.+.
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred CCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 4556666666543 332222234455666666665543
No 73
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.57 E-value=0.39 Score=23.13 Aligned_cols=17 Identities=35% Similarity=0.647 Sum_probs=9.7
Q ss_pred CCCEEEccCCcCCccCcc
Q 030146 130 SLISLDLYNNNISGKIPP 147 (182)
Q Consensus 130 ~L~~L~ls~n~l~~~~p~ 147 (182)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4556666666665 4444
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=87.46 E-value=0.75 Score=35.90 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=15.5
Q ss_pred CEEEEEcCCCCCCccccccc----cCCCCCCeeecccccc
Q 030146 82 RVTRLDLGNSNLSGRLVPEL----GKLEHLQYLELYKNNI 117 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l 117 (182)
+++.++|++|.+....|+.+ +.-+.|..|.+++|.+
T Consensus 93 ~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 93 RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 34445555554443333322 2234444444444444
No 75
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=86.25 E-value=0.02 Score=44.82 Aligned_cols=85 Identities=24% Similarity=0.211 Sum_probs=48.4
Q ss_pred CEEEEEcCCCCCCcc-ccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCC-cCCcc-CcccccCCCCCceE
Q 030146 82 RVTRLDLGNSNLSGR-LVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN-NISGK-IPPSLAKLKSLVFL 158 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n-~l~~~-~p~~~~~l~~L~~L 158 (182)
+++.+||+...++.. ...-+..+..|+.+.+.++++...+-..+..-..|+.++++.+ .++.. .--.+..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466677776666531 2223455666777777777777655556666666777776653 23311 01124556666666
Q ss_pred ecccccCC
Q 030146 159 RLNDNRLT 166 (182)
Q Consensus 159 ~L~~N~l~ 166 (182)
+++.+.++
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 66665544
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.01 E-value=0.11 Score=24.19 Aligned_cols=13 Identities=54% Similarity=0.726 Sum_probs=4.9
Q ss_pred CCCEEEccCCcCC
Q 030146 130 SLISLDLYNNNIS 142 (182)
Q Consensus 130 ~L~~L~ls~n~l~ 142 (182)
+|++|++++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.43 E-value=0.24 Score=36.63 Aligned_cols=83 Identities=27% Similarity=0.236 Sum_probs=55.9
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCC-CCccc-CCCCCCCEEEccCC-cCCccCcccccCCCCCceE
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGT-IPVEL-GNLKSLISLDLYNN-NISGKIPPSLAKLKSLVFL 158 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~-~~l~~L~~L~ls~n-~l~~~~p~~~~~l~~L~~L 158 (182)
.|+.+|-++..+...--+.+..++.++.+.+..+..-+. .-..+ +-.++|+.|+++.| +|+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 478899999888765556777888888888877664321 00111 13478999999965 4664434456778888888
Q ss_pred eccccc
Q 030146 159 RLNDNR 164 (182)
Q Consensus 159 ~L~~N~ 164 (182)
.+.+=+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 876543
No 78
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.47 E-value=1.5 Score=21.08 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=11.5
Q ss_pred CCCCceEecccccCC
Q 030146 152 LKSLVFLRLNDNRLT 166 (182)
Q Consensus 152 l~~L~~L~L~~N~l~ 166 (182)
+.+|+.|++++|.++
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356788888888876
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.34 E-value=1.6 Score=21.19 Aligned_cols=14 Identities=43% Similarity=0.475 Sum_probs=10.7
Q ss_pred CCCceEecccccCC
Q 030146 153 KSLVFLRLNDNRLT 166 (182)
Q Consensus 153 ~~L~~L~L~~N~l~ 166 (182)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46788888888775
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.04 E-value=4.9 Score=34.28 Aligned_cols=62 Identities=24% Similarity=0.149 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCCCCCccc--cccccCCCCCCeeecccc--ccCCCCCcccCC--CCCCCEEEccCCcCCc
Q 030146 80 DNRVTRLDLGNSNLSGRL--VPELGKLEHLQYLELYKN--NIQGTIPVELGN--LKSLISLDLYNNNISG 143 (182)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~--l~~L~~L~ls~n~l~~ 143 (182)
.+.|..+.|++|++.... ..--...++|..|+|++| .+.. ..++.+ ...|++|.+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 456777777777765221 111123466777777777 3321 111221 2236667777776653
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=43.72 E-value=12 Score=30.73 Aligned_cols=85 Identities=20% Similarity=0.104 Sum_probs=44.6
Q ss_pred CCEEEEEcCCC-CCCccc----cccccCCCCCCeeeccccc-cCCCCCcccC-CCCCCCEEEccCCc-CCccCcc-cccC
Q 030146 81 NRVTRLDLGNS-NLSGRL----VPELGKLEHLQYLELYKNN-IQGTIPVELG-NLKSLISLDLYNNN-ISGKIPP-SLAK 151 (182)
Q Consensus 81 ~~l~~L~l~~n-~l~~~~----~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~-~l~~L~~L~ls~n~-l~~~~p~-~~~~ 151 (182)
.+++.++++++ ...... ......++.|+.+++++.. ++...-..+. .+++|+.|.+.++. ++..--. ....
T Consensus 214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~ 293 (482)
T KOG1947|consen 214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER 293 (482)
T ss_pred chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence 45777777652 111011 1122345677777877776 4422111222 36778888766555 4432111 2235
Q ss_pred CCCCceEecccccC
Q 030146 152 LKSLVFLRLNDNRL 165 (182)
Q Consensus 152 l~~L~~L~L~~N~l 165 (182)
++.|+.|+++++..
T Consensus 294 ~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 294 CPSLRELDLSGCHG 307 (482)
T ss_pred cCcccEEeeecCcc
Confidence 67788888886654
No 82
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=39.79 E-value=53 Score=18.23 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=11.4
Q ss_pred chHHHHHHHHHHhc
Q 030146 39 NSEGDALYALRRSL 52 (182)
Q Consensus 39 ~~~~~~l~~~~~~~ 52 (182)
.+|+++|++.+..+
T Consensus 30 rqdrdallear~kl 43 (54)
T PF13260_consen 30 RQDRDALLEARNKL 43 (54)
T ss_pred hhhHHHHHHHHHHH
Confidence 48999999988665
No 83
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=37.64 E-value=60 Score=20.41 Aligned_cols=19 Identities=21% Similarity=0.494 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030146 9 AQWLSVCITFSVSLIIIII 27 (182)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~ 27 (182)
+.|++.+....+++++++.
T Consensus 41 ~FWv~LA~FV~~lF~iL~~ 59 (90)
T PF15183_consen 41 AFWVSLAAFVVFLFLILLY 59 (90)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4688887665555555444
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=37.56 E-value=24 Score=16.37 Aligned_cols=11 Identities=36% Similarity=0.350 Sum_probs=5.2
Q ss_pred CCCCEEEccCC
Q 030146 129 KSLISLDLYNN 139 (182)
Q Consensus 129 ~~L~~L~ls~n 139 (182)
++|+.|+++++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34455555444
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.19 E-value=24 Score=36.13 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=26.7
Q ss_pred EcCCCCCCccccccccCCCCCCeeeccccccC
Q 030146 87 DLGNSNLSGRLVPELGKLEHLQYLELYKNNIQ 118 (182)
Q Consensus 87 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 118 (182)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57889998666667888999999999999876
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.97 E-value=29 Score=29.86 Aligned_cols=64 Identities=27% Similarity=0.217 Sum_probs=42.2
Q ss_pred CCCCCCeeeccccccCCC--CCcccCCCCCCCEEEccCC--cCCccCcccccC--CCCCceEecccccCCCC
Q 030146 103 KLEHLQYLELYKNNIQGT--IPVELGNLKSLISLDLYNN--NISGKIPPSLAK--LKSLVFLRLNDNRLTGQ 168 (182)
Q Consensus 103 ~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~ls~n--~l~~~~p~~~~~--l~~L~~L~L~~N~l~g~ 168 (182)
+.+.+..+++++|++... +..--...+.|+.|+|++| .+.. ...+.. ...|++|-+.+|++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 456788889999998632 1112234578999999999 4431 122332 34678999999988743
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.34 E-value=45 Score=34.35 Aligned_cols=14 Identities=14% Similarity=0.399 Sum_probs=8.2
Q ss_pred CCEEEEEcCCCCCC
Q 030146 81 NRVTRLDLGNSNLS 94 (182)
Q Consensus 81 ~~l~~L~l~~n~l~ 94 (182)
.+++.|+|++|.+.
T Consensus 19 ~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 19 CNLSEIDLSGNPFE 32 (2740)
T ss_pred CCceEEEeeCCccc
Confidence 34566666666554
Done!