Query 030146
Match_columns 182
No_of_seqs 246 out of 3125
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 14:49:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-24 4.1E-29 169.6 11.3 145 36-182 2-154 (313)
2 4eco_A Uncharacterized protein 99.9 8.1E-22 2.8E-26 166.9 10.0 142 39-182 29-278 (636)
3 3rgz_A Protein brassinosteroid 99.9 1.5E-21 5E-26 168.4 9.4 144 35-181 7-182 (768)
4 4ecn_A Leucine-rich repeat pro 99.8 2.1E-21 7.2E-26 169.0 9.0 140 38-182 267-520 (876)
5 4fcg_A Uncharacterized protein 99.8 2.4E-19 8.2E-24 140.5 4.6 139 34-175 21-172 (328)
6 3e6j_A Variable lymphocyte rec 99.7 7.4E-17 2.5E-21 120.2 11.0 114 67-181 16-139 (229)
7 1w8a_A SLIT protein; signaling 99.7 1.2E-16 4E-21 116.1 9.0 115 68-182 6-131 (192)
8 2o6r_A Variable lymphocyte rec 99.7 1E-15 3.4E-20 109.5 10.9 115 68-182 5-129 (177)
9 2o6s_A Variable lymphocyte rec 99.6 1.1E-15 3.9E-20 111.8 10.9 114 68-181 5-128 (208)
10 2v9t_B SLIT homolog 2 protein 99.6 8.5E-16 2.9E-20 113.9 10.0 99 82-180 33-131 (220)
11 2wfh_A SLIT homolog 2 protein 99.6 2.6E-15 8.8E-20 109.2 10.4 114 68-182 8-131 (193)
12 2v70_A SLIT-2, SLIT homolog 2 99.6 3.1E-15 1.1E-19 110.8 9.7 101 81-181 57-157 (220)
13 2v70_A SLIT-2, SLIT homolog 2 99.6 3.9E-15 1.3E-19 110.3 9.4 115 68-182 9-134 (220)
14 2o6q_A Variable lymphocyte rec 99.6 8.1E-15 2.8E-19 111.5 10.1 100 82-181 38-137 (270)
15 2v9t_B SLIT homolog 2 protein 99.6 1E-14 3.4E-19 108.0 10.1 103 80-182 55-157 (220)
16 3m19_A Variable lymphocyte rec 99.6 1E-14 3.5E-19 109.8 10.3 102 81-182 59-160 (251)
17 4g8a_A TOLL-like receptor 4; l 99.6 6.9E-15 2.4E-19 123.1 9.0 102 81-182 52-153 (635)
18 2z81_A CD282 antigen, TOLL-lik 99.6 8.9E-15 3E-19 121.1 9.0 102 81-182 26-128 (549)
19 3g39_A Variable lymphocyte rec 99.5 3.3E-14 1.1E-18 101.2 10.3 102 68-169 7-118 (170)
20 1ogq_A PGIP-2, polygalacturona 99.5 3.5E-15 1.2E-19 116.0 4.3 102 81-182 76-179 (313)
21 4fcg_A Uncharacterized protein 99.5 2.4E-14 8E-19 112.1 9.0 99 82-181 207-305 (328)
22 3rgz_A Protein brassinosteroid 99.5 7.9E-15 2.7E-19 126.5 6.7 92 81-172 632-723 (768)
23 3e6j_A Variable lymphocyte rec 99.5 5.7E-14 1.9E-18 104.6 10.3 102 80-182 63-164 (229)
24 3m19_A Variable lymphocyte rec 99.5 6.3E-14 2.2E-18 105.5 10.4 102 81-182 83-184 (251)
25 3g39_A Variable lymphocyte rec 99.5 6.5E-14 2.2E-18 99.7 9.8 97 83-182 11-107 (170)
26 2o6s_A Variable lymphocyte rec 99.5 8.6E-14 2.9E-18 101.8 10.3 103 80-182 51-153 (208)
27 2r9u_A Variable lymphocyte rec 99.5 1.2E-13 4.2E-18 98.7 10.0 86 81-166 33-118 (174)
28 3zyi_A Leucine-rich repeat-con 99.5 6.9E-14 2.4E-18 113.6 9.6 101 81-181 75-175 (452)
29 2z80_A TOLL-like receptor 2, v 99.5 5.7E-14 1.9E-18 110.6 8.8 101 81-182 52-154 (353)
30 2je0_A Acidic leucine-rich nuc 99.5 2.6E-14 8.8E-19 99.3 5.9 101 80-182 41-145 (149)
31 3rfs_A Internalin B, repeat mo 99.5 1.5E-13 5.1E-18 104.7 10.5 100 82-181 110-209 (272)
32 3rfs_A Internalin B, repeat mo 99.5 1.9E-13 6.4E-18 104.1 10.4 103 80-182 84-186 (272)
33 2xot_A Amphoterin-induced prot 99.5 7.3E-14 2.5E-18 110.6 8.4 99 82-180 40-139 (361)
34 3vq2_A TLR4, TOLL-like recepto 99.5 1.1E-13 3.8E-18 115.9 9.9 102 81-182 56-158 (606)
35 2ell_A Acidic leucine-rich nuc 99.5 7.2E-14 2.4E-18 98.9 7.3 99 81-182 49-152 (168)
36 1w8a_A SLIT protein; signaling 99.5 1.3E-13 4.3E-18 100.0 8.2 91 80-170 53-143 (192)
37 1ozn_A Reticulon 4 receptor; N 99.5 3.2E-13 1.1E-17 103.2 9.8 101 81-181 56-157 (285)
38 2je0_A Acidic leucine-rich nuc 99.4 4.1E-14 1.4E-18 98.3 4.0 100 81-182 17-118 (149)
39 3vq2_A TLR4, TOLL-like recepto 99.4 4.4E-13 1.5E-17 112.2 10.4 102 81-182 32-133 (606)
40 2r9u_A Variable lymphocyte rec 99.4 6.8E-13 2.3E-17 94.8 9.8 96 84-182 15-110 (174)
41 3j0a_A TOLL-like receptor 5; m 99.4 1.6E-13 5.6E-18 119.4 7.8 99 83-181 50-152 (844)
42 3t6q_A CD180 antigen; protein- 99.4 2.9E-13 9.8E-18 113.4 9.0 101 81-181 33-133 (606)
43 3v47_A TOLL-like receptor 5B a 99.4 3.3E-13 1.1E-17 109.2 8.9 102 81-182 299-400 (455)
44 1ozn_A Reticulon 4 receptor; N 99.4 7.2E-13 2.5E-17 101.2 10.1 101 81-181 80-181 (285)
45 1p9a_G Platelet glycoprotein I 99.4 8.4E-13 2.9E-17 101.6 10.4 84 82-166 78-161 (290)
46 2ell_A Acidic leucine-rich nuc 99.4 2.1E-13 7.1E-18 96.5 6.4 98 81-181 24-124 (168)
47 3v47_A TOLL-like receptor 5B a 99.4 3E-13 1E-17 109.5 8.1 102 81-182 275-376 (455)
48 2o6q_A Variable lymphocyte rec 99.4 9.7E-13 3.3E-17 100.0 10.5 100 82-181 110-209 (270)
49 4g8a_A TOLL-like receptor 4; l 99.4 4.2E-13 1.4E-17 112.2 9.1 102 81-182 76-178 (635)
50 2z62_A TOLL-like receptor 4, v 99.4 6.9E-13 2.4E-17 100.9 9.2 101 81-181 52-153 (276)
51 2z62_A TOLL-like receptor 4, v 99.4 6.3E-13 2.2E-17 101.1 8.9 102 81-182 28-129 (276)
52 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 5E-13 1.7E-17 111.3 8.9 99 81-182 52-151 (562)
53 2ft3_A Biglycan; proteoglycan, 99.4 8.1E-13 2.8E-17 103.1 9.5 112 68-182 31-152 (332)
54 2id5_A Lingo-1, leucine rich r 99.4 5E-13 1.7E-17 109.0 8.5 99 82-180 33-131 (477)
55 1p9a_G Platelet glycoprotein I 99.4 1.4E-12 4.8E-17 100.3 10.3 101 80-181 99-199 (290)
56 2xot_A Amphoterin-induced prot 99.4 8.4E-13 2.9E-17 104.4 8.9 101 80-181 63-167 (361)
57 2z7x_B TOLL-like receptor 1, v 99.4 4.4E-13 1.5E-17 110.4 7.6 99 81-182 21-120 (520)
58 3oja_B Anopheles plasmodium-re 99.4 9.7E-13 3.3E-17 110.5 9.8 101 82-182 76-176 (597)
59 2z66_A Variable lymphocyte rec 99.4 8E-13 2.7E-17 101.9 8.3 101 81-181 150-252 (306)
60 4b8c_D Glucose-repressible alc 99.4 5.9E-13 2E-17 114.3 8.0 98 81-182 224-321 (727)
61 3o6n_A APL1; leucine-rich repe 99.4 1.4E-12 4.9E-17 103.8 9.8 101 81-182 69-170 (390)
62 3zyj_A Leucine-rich repeat-con 99.4 1.1E-12 3.8E-17 106.2 9.1 101 81-181 64-164 (440)
63 2ifg_A High affinity nerve gro 99.4 1.3E-12 4.3E-17 102.6 9.2 97 69-166 7-116 (347)
64 2z66_A Variable lymphocyte rec 99.4 9.2E-13 3.1E-17 101.6 7.9 101 81-181 126-227 (306)
65 2xwt_C Thyrotropin receptor; s 99.4 7E-13 2.4E-17 98.9 7.0 98 81-180 31-130 (239)
66 4ezg_A Putative uncharacterize 99.4 7.7E-13 2.6E-17 96.1 6.9 97 81-181 88-185 (197)
67 3oja_B Anopheles plasmodium-re 99.4 6.2E-13 2.1E-17 111.7 7.3 102 81-182 51-152 (597)
68 1ziw_A TOLL-like receptor 3; i 99.4 1.2E-12 4E-17 111.1 8.9 102 81-182 49-150 (680)
69 2wfh_A SLIT homolog 2 protein 99.4 2.1E-12 7.1E-17 93.7 9.0 95 84-182 13-107 (193)
70 1xku_A Decorin; proteoglycan, 99.4 2E-12 6.7E-17 100.8 9.4 110 68-180 29-148 (330)
71 2id5_A Lingo-1, leucine rich r 99.4 1.3E-12 4.3E-17 106.6 8.6 101 81-181 56-156 (477)
72 1dce_A Protein (RAB geranylger 99.4 1.2E-12 4.1E-17 109.5 8.5 99 81-182 463-565 (567)
73 4eco_A Uncharacterized protein 99.4 3.7E-13 1.3E-17 113.9 5.2 102 80-182 205-335 (636)
74 1a9n_A U2A', U2A'; complex (nu 99.4 4.2E-13 1.4E-17 95.8 4.6 97 82-182 43-145 (176)
75 3o6n_A APL1; leucine-rich repe 99.4 7.9E-13 2.7E-17 105.3 6.4 101 81-182 45-146 (390)
76 4ezg_A Putative uncharacterize 99.4 1.4E-12 4.9E-17 94.6 7.1 99 81-182 66-164 (197)
77 1ziw_A TOLL-like receptor 3; i 99.3 2.3E-12 7.8E-17 109.3 9.0 99 82-180 26-124 (680)
78 2o6r_A Variable lymphocyte rec 99.3 3.6E-12 1.2E-16 90.9 8.7 91 80-170 51-141 (177)
79 2z63_A TOLL-like receptor 4, v 99.3 2.9E-12 1E-16 106.3 9.3 102 81-182 52-154 (570)
80 1dce_A Protein (RAB geranylger 99.3 2.2E-12 7.5E-17 107.9 8.2 96 82-182 442-538 (567)
81 2z63_A TOLL-like receptor 4, v 99.3 4.2E-12 1.5E-16 105.3 9.8 102 81-182 28-129 (570)
82 1wwl_A Monocyte differentiatio 99.3 4E-13 1.4E-17 104.2 3.0 85 82-167 96-187 (312)
83 1a9n_A U2A', U2A'; complex (nu 99.3 4E-12 1.4E-16 90.6 7.9 97 81-182 19-118 (176)
84 3oja_A Leucine-rich immune mol 99.3 2.8E-12 9.6E-17 105.4 6.9 108 72-181 111-241 (487)
85 3t6q_A CD180 antigen; protein- 99.3 6E-12 2E-16 105.4 8.8 101 81-181 57-157 (606)
86 3zyj_A Leucine-rich repeat-con 99.3 7.6E-12 2.6E-16 101.3 9.0 98 82-181 186-283 (440)
87 3zyi_A Leucine-rich repeat-con 99.3 7.6E-12 2.6E-16 101.6 8.9 98 82-181 197-294 (452)
88 2z81_A CD282 antigen, TOLL-lik 99.3 2.8E-12 9.5E-17 106.1 6.3 101 81-181 50-152 (549)
89 4ecn_A Leucine-rich repeat pro 99.3 1.3E-12 4.3E-17 114.1 3.8 102 80-182 447-578 (876)
90 1xku_A Decorin; proteoglycan, 99.3 2.6E-11 8.9E-16 94.4 9.7 92 81-173 192-283 (330)
91 2z80_A TOLL-like receptor 2, v 99.3 6.7E-12 2.3E-16 98.7 6.3 100 81-181 76-178 (353)
92 4b8c_D Glucose-repressible alc 99.2 2.8E-12 9.7E-17 110.1 4.0 92 80-174 246-337 (727)
93 2ft3_A Biglycan; proteoglycan, 99.2 1.7E-11 5.7E-16 95.6 7.8 93 81-174 193-285 (332)
94 2xwt_C Thyrotropin receptor; s 99.2 8.4E-12 2.9E-16 93.0 5.3 98 81-180 55-158 (239)
95 3j0a_A TOLL-like receptor 5; m 99.2 2.9E-11 9.8E-16 105.3 9.4 102 81-182 266-367 (844)
96 2ifg_A High affinity nerve gro 99.2 2.2E-11 7.5E-16 95.5 7.9 94 85-181 12-107 (347)
97 4glp_A Monocyte differentiatio 99.2 1.2E-11 3.9E-16 95.8 6.1 101 82-182 92-202 (310)
98 2z7x_B TOLL-like receptor 1, v 99.2 1.4E-11 4.8E-16 101.4 6.9 100 81-181 324-448 (520)
99 1wwl_A Monocyte differentiatio 99.2 2.2E-12 7.6E-17 100.0 1.5 99 83-182 65-178 (312)
100 3o53_A Protein LRIM1, AGAP0063 99.2 2.9E-11 9.8E-16 93.9 7.4 98 81-182 144-242 (317)
101 3o53_A Protein LRIM1, AGAP0063 99.2 2.4E-11 8.3E-16 94.3 6.8 104 76-182 115-219 (317)
102 3oja_A Leucine-rich immune mol 99.2 3.1E-11 1.1E-15 99.2 7.4 95 82-180 170-265 (487)
103 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 3.3E-11 1.1E-15 100.3 7.6 100 81-181 353-477 (562)
104 4glp_A Monocyte differentiatio 99.1 1.7E-11 5.8E-16 94.8 3.8 95 81-176 145-247 (310)
105 4ay9_X Follicle-stimulating ho 99.1 6.8E-11 2.3E-15 93.0 7.2 111 68-178 7-129 (350)
106 4fmz_A Internalin; leucine ric 99.1 1E-10 3.5E-15 91.4 7.6 94 82-181 244-337 (347)
107 1h6t_A Internalin B; cell adhe 99.1 1.7E-10 5.9E-15 88.6 8.6 92 81-180 90-181 (291)
108 1h6t_A Internalin B; cell adhe 99.1 2.7E-10 9.2E-15 87.5 9.1 91 82-180 69-159 (291)
109 1h6u_A Internalin H; cell adhe 99.1 3E-10 1E-14 87.9 9.3 93 81-181 85-177 (308)
110 1xeu_A Internalin C; cellular 99.1 3.8E-10 1.3E-14 85.5 9.2 79 81-166 63-141 (263)
111 1h6u_A Internalin H; cell adhe 99.1 2.6E-10 8.8E-15 88.3 8.2 80 81-166 107-186 (308)
112 1xeu_A Internalin C; cellular 99.1 5E-10 1.7E-14 84.8 8.8 93 81-182 41-133 (263)
113 4fmz_A Internalin; leucine ric 99.1 3.1E-10 1.1E-14 88.7 7.9 96 81-182 221-316 (347)
114 1m9s_A Internalin B; cell inva 99.0 6E-10 2E-14 93.9 9.0 79 82-166 88-166 (605)
115 3cvr_A Invasion plasmid antige 99.0 1.7E-10 5.9E-15 96.4 5.4 84 71-166 49-133 (571)
116 1m9s_A Internalin B; cell inva 99.0 8E-10 2.7E-14 93.1 9.2 93 81-181 109-201 (605)
117 1o6v_A Internalin A; bacterial 99.0 6.1E-10 2.1E-14 90.7 8.2 92 82-181 288-379 (466)
118 1ds9_A Outer arm dynein; leuci 99.0 3.9E-12 1.4E-16 92.3 -5.1 97 80-182 47-145 (198)
119 1o6v_A Internalin A; bacterial 99.0 1.1E-09 3.7E-14 89.2 8.5 79 82-166 244-322 (466)
120 3bz5_A Internalin-J, INLJ; leu 99.0 1.6E-09 5.5E-14 88.3 9.4 89 81-181 64-152 (457)
121 2ast_B S-phase kinase-associat 99.0 5.9E-11 2E-15 92.3 0.8 100 82-181 94-199 (336)
122 2ast_B S-phase kinase-associat 99.0 1.7E-11 5.8E-16 95.4 -2.7 82 82-163 119-205 (336)
123 1ds9_A Outer arm dynein; leuci 99.0 2.6E-12 9E-17 93.3 -7.1 93 84-181 21-119 (198)
124 3cvr_A Invasion plasmid antige 99.0 1.7E-09 5.9E-14 90.4 8.5 48 129-181 180-234 (571)
125 3bz5_A Internalin-J, INLJ; leu 98.9 5.2E-09 1.8E-13 85.3 9.3 80 81-169 170-249 (457)
126 2ca6_A RAN GTPase-activating p 98.9 1.5E-10 5E-15 92.1 -1.6 86 82-167 188-288 (386)
127 1jl5_A Outer protein YOPM; leu 98.8 1.2E-08 4.2E-13 83.0 9.6 77 82-166 132-208 (454)
128 3goz_A Leucine-rich repeat-con 98.8 4.3E-10 1.5E-14 88.8 0.0 87 82-168 52-153 (362)
129 4ay9_X Follicle-stimulating ho 98.8 7.1E-09 2.4E-13 81.5 6.7 101 75-182 7-109 (350)
130 2ca6_A RAN GTPase-activating p 98.8 4.5E-10 1.5E-14 89.2 -0.5 102 81-182 159-279 (386)
131 1jl5_A Outer protein YOPM; leu 98.8 6.3E-09 2.2E-13 84.7 6.2 85 82-174 318-419 (454)
132 3g06_A SSPH2 (leucine-rich rep 98.8 3.2E-08 1.1E-12 83.6 10.5 68 105-181 221-288 (622)
133 3g06_A SSPH2 (leucine-rich rep 98.8 3.5E-09 1.2E-13 89.4 4.4 85 81-174 221-305 (622)
134 3goz_A Leucine-rich repeat-con 98.8 1.4E-09 4.9E-14 85.8 1.0 93 81-173 22-129 (362)
135 3sb4_A Hypothetical leucine ri 98.7 3.3E-08 1.1E-12 77.0 6.9 100 81-182 226-326 (329)
136 3rw6_A Nuclear RNA export fact 98.7 9.5E-09 3.2E-13 78.1 3.4 79 102-182 167-256 (267)
137 1z7x_W Ribonuclease inhibitor; 98.6 1.2E-09 4.3E-14 88.2 -4.6 15 128-142 340-354 (461)
138 1z7x_W Ribonuclease inhibitor; 98.5 3.8E-09 1.3E-13 85.4 -2.8 87 81-167 313-412 (461)
139 3rw6_A Nuclear RNA export fact 98.4 1.6E-07 5.6E-12 71.2 4.2 78 80-159 169-257 (267)
140 3un9_A NLR family member X1; l 98.3 3.8E-08 1.3E-12 78.2 -1.5 85 82-166 127-224 (372)
141 3un9_A NLR family member X1; l 98.1 3.1E-07 1.1E-11 72.9 -0.1 88 80-167 154-253 (372)
142 3sb4_A Hypothetical leucine ri 98.0 9.1E-06 3.1E-10 63.0 6.4 52 128-180 225-276 (329)
143 1io0_A Tropomodulin; LRR prote 98.0 3.9E-07 1.3E-11 65.3 -1.4 84 82-165 66-163 (185)
144 3ogk_B Coronatine-insensitive 98.0 9.3E-07 3.2E-11 73.5 -0.1 40 103-142 162-205 (592)
145 3e4g_A ATP synthase subunit S, 98.0 2.3E-06 7.9E-11 60.8 1.8 84 81-164 61-150 (176)
146 3ogk_B Coronatine-insensitive 97.9 6.5E-06 2.2E-10 68.4 3.8 100 81-182 192-323 (592)
147 2p1m_B Transport inhibitor res 97.8 6.3E-07 2.2E-11 74.5 -4.1 84 82-166 433-519 (594)
148 1io0_A Tropomodulin; LRR prote 97.8 3.2E-06 1.1E-10 60.5 -0.1 102 80-181 35-155 (185)
149 2p1m_B Transport inhibitor res 97.7 2.1E-06 7.3E-11 71.3 -1.6 84 81-164 105-195 (594)
150 3e4g_A ATP synthase subunit S, 97.5 2E-05 6.8E-10 56.0 0.9 78 105-182 61-144 (176)
151 3rfe_A Platelet glycoprotein I 97.4 0.00043 1.5E-08 46.6 6.4 56 85-142 12-68 (130)
152 2ra8_A Uncharacterized protein 97.4 1.8E-05 6E-10 62.6 -1.0 86 82-167 194-293 (362)
153 4fdw_A Leucine rich hypothetic 97.3 0.00063 2.1E-08 54.4 7.3 75 99-176 294-368 (401)
154 4fdw_A Leucine rich hypothetic 97.2 0.00057 1.9E-08 54.6 5.9 95 83-181 250-349 (401)
155 3rfe_A Platelet glycoprotein I 97.2 0.00094 3.2E-08 44.8 6.2 35 83-117 33-67 (130)
156 2ra8_A Uncharacterized protein 96.5 0.00024 8.2E-09 56.1 -1.3 87 80-166 218-320 (362)
157 4h09_A Hypothetical leucine ri 96.4 0.012 4E-07 46.1 7.8 37 125-161 282-318 (379)
158 4fs7_A Uncharacterized protein 96.4 0.0059 2E-07 48.3 5.9 95 82-181 298-392 (394)
159 4gt6_A Cell surface protein; l 96.1 0.024 8.2E-07 44.7 8.3 37 124-161 306-342 (394)
160 4gt6_A Cell surface protein; l 95.6 0.035 1.2E-06 43.7 7.3 92 83-180 290-381 (394)
161 1pgv_A TMD-1, tropomodulin TMD 95.4 0.0051 1.7E-07 44.3 1.4 83 81-163 41-136 (197)
162 4h09_A Hypothetical leucine ri 95.2 0.051 1.7E-06 42.4 6.8 65 98-163 279-343 (379)
163 4fs7_A Uncharacterized protein 94.9 0.039 1.3E-06 43.5 5.5 78 101-181 293-370 (394)
164 1pgv_A TMD-1, tropomodulin TMD 94.2 0.0087 3E-07 43.1 0.1 86 80-165 69-169 (197)
165 2lz0_A Uncharacterized protein 54.0 32 0.0011 21.2 5.1 40 98-138 13-52 (100)
166 2lz0_A Uncharacterized protein 52.7 29 0.00098 21.5 4.7 46 117-163 8-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=1.2e-24 Score=169.65 Aligned_cols=145 Identities=32% Similarity=0.604 Sum_probs=130.4
Q ss_pred cCCchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCc--ccceeeCCC---CCEEEEEcCCCCCCc--cccccccCCCCCC
Q 030146 36 ASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCT--WFHITCNQD---NRVTRLDLGNSNLSG--RLVPELGKLEHLQ 108 (182)
Q Consensus 36 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~c~--w~~v~c~~~---~~l~~L~l~~n~l~~--~~~~~~~~l~~L~ 108 (182)
.|.++|+++|+++|+.+.++. .+.+|... .++|. |.||.|+.. ++|+.|++++|.+.+ .+|..+..+++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~-~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTT-SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCC-CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 477889999999999998775 67899764 67888 999999864 799999999999998 8899999999999
Q ss_pred eeeccc-cccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecccccCCCCCcccccCCCCCccC
Q 030146 109 YLELYK-NNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 109 ~L~l~~-n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L 182 (182)
.|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 999995 99998999999999999999999999998899999999999999999999998999999888888764
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=8.1e-22 Score=166.89 Aligned_cols=142 Identities=20% Similarity=0.249 Sum_probs=126.5
Q ss_pred chHHHHHHHHHHhcCCCCCC--------CCCCCCCCCCCCcc---cceeeCCCCCEEEEEcCCCCCCccccccccCCCCC
Q 030146 39 NSEGDALYALRRSLSDPDNV--------LQSWDPTLVNPCTW---FHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHL 107 (182)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~~~--------~~~w~~~~~~~c~w---~~v~c~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L 107 (182)
.+|++||.+++.++.++.+. ..+|+.. .++|.| .||+|+..++|+.|+++++++.|.+|+.++.+++|
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~-~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L 107 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN-KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTEL 107 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCS-SCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTC
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC-CCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccc
Confidence 46899999999998766543 2369865 789999 99999888999999999999999999999999999
Q ss_pred Ceeecccccc----------------------------------------------------------------------
Q 030146 108 QYLELYKNNI---------------------------------------------------------------------- 117 (182)
Q Consensus 108 ~~L~l~~n~l---------------------------------------------------------------------- 117 (182)
+.|++++|.+
T Consensus 108 ~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~ 187 (636)
T 4eco_A 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ 187 (636)
T ss_dssp CEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTT
T ss_pred eEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhh
Confidence 9999998843
Q ss_pred --------CCCCCcccCCCCCCCEEEccCCcCCcc-----------------Cccccc--CCCCCceEecccccCCCCCc
Q 030146 118 --------QGTIPVELGNLKSLISLDLYNNNISGK-----------------IPPSLA--KLKSLVFLRLNDNRLTGQIP 170 (182)
Q Consensus 118 --------~~~~p~~~~~l~~L~~L~ls~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~N~l~g~~p 170 (182)
++ +|..++.+++|++|++++|.+++. +|+.++ ++++|++|++++|.+.|.+|
T Consensus 188 l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p 266 (636)
T 4eco_A 188 IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP 266 (636)
T ss_dssp TTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC
T ss_pred hccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh
Confidence 34 788899999999999999999985 999998 99999999999999999999
Q ss_pred ccccCCCCCccC
Q 030146 171 RELVGISSLKVV 182 (182)
Q Consensus 171 ~~~~~l~~L~~L 182 (182)
+.++++++|++|
T Consensus 267 ~~l~~l~~L~~L 278 (636)
T 4eco_A 267 TFLKALPEMQLI 278 (636)
T ss_dssp TTTTTCSSCCEE
T ss_pred HHHhcCCCCCEE
Confidence 999999999864
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=1.5e-21 Score=168.40 Aligned_cols=144 Identities=28% Similarity=0.399 Sum_probs=97.7
Q ss_pred hcCCchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcccceeeCCCCCEEEEEcCCCCCCcc---cccc-----------
Q 030146 35 VASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGR---LVPE----------- 100 (182)
Q Consensus 35 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~c~w~~v~c~~~~~l~~L~l~~n~l~~~---~~~~----------- 100 (182)
++..++|+++|++||+.+.+|. .+.+|... .+||.|.||+|+ .++|+.|+++++.+.|. +++.
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~~~-~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPDWSSN-KNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTTCCTT-SCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-cccCCCCC-CCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence 3345689999999999998887 88999844 689999999998 78999999999999886 5544
Q ss_pred ------------ccCCCCCCeeeccccccCCCCCc--ccCCCCCCCEEEccCCcCCccCcccc-cCCCCCceEecccccC
Q 030146 101 ------------LGKLEHLQYLELYKNNIQGTIPV--ELGNLKSLISLDLYNNNISGKIPPSL-AKLKSLVFLRLNDNRL 165 (182)
Q Consensus 101 ------------~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~ls~n~l~~~~p~~~-~~l~~L~~L~L~~N~l 165 (182)
+..+++|++|++++|.+.|.+|. .++.+++|++|++++|.+.+..|..+ .++++|++|++++|.+
T Consensus 84 ~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp CTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred CcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence 44555555555555555555554 55555555555555555555554443 4555556666665555
Q ss_pred CCCCccc---ccCCCCCcc
Q 030146 166 TGQIPRE---LVGISSLKV 181 (182)
Q Consensus 166 ~g~~p~~---~~~l~~L~~ 181 (182)
++..|.. +.++++|++
T Consensus 164 ~~~~~~~~~~~~~l~~L~~ 182 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKH 182 (768)
T ss_dssp EEETHHHHHHTTCCTTCCE
T ss_pred CCcCChhhhhhccCCCCCE
Confidence 5555444 455555544
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=2.1e-21 Score=168.99 Aligned_cols=140 Identities=21% Similarity=0.272 Sum_probs=123.1
Q ss_pred CchHHHHHHHHHHhcCCCCCCCCCCCCCC----CCC--Ccc------------cceeeCCCCCEEEEEcCCCCCCccccc
Q 030146 38 GNSEGDALYALRRSLSDPDNVLQSWDPTL----VNP--CTW------------FHITCNQDNRVTRLDLGNSNLSGRLVP 99 (182)
Q Consensus 38 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~----~~~--c~w------------~~v~c~~~~~l~~L~l~~n~l~~~~~~ 99 (182)
..+|+.+|+++|+++.+| +|+... .++ |.| .||.|+..++|+.|+|+++++.|.+|+
T Consensus 267 ~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~ 341 (876)
T 4ecn_A 267 YIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD 341 (876)
T ss_dssp HHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECG
T ss_pred chHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCch
Confidence 347999999999999766 675443 344 999 999999888999999999999999999
Q ss_pred cccCCCCCCeeec-cccccCCC----------------------------------------------------------
Q 030146 100 ELGKLEHLQYLEL-YKNNIQGT---------------------------------------------------------- 120 (182)
Q Consensus 100 ~~~~l~~L~~L~l-~~n~l~~~---------------------------------------------------------- 120 (182)
.++.+++|+.|++ ++|.+.|.
T Consensus 342 ~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~ 421 (876)
T 4ecn_A 342 AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421 (876)
T ss_dssp GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCC
T ss_pred HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccccc
Confidence 9999999999999 77754333
Q ss_pred ------------------CCcccCCCCCCCEEEccCCcCCc-----------------cCccccc--CCCCCceEecccc
Q 030146 121 ------------------IPVELGNLKSLISLDLYNNNISG-----------------KIPPSLA--KLKSLVFLRLNDN 163 (182)
Q Consensus 121 ------------------~p~~~~~l~~L~~L~ls~n~l~~-----------------~~p~~~~--~l~~L~~L~L~~N 163 (182)
+|..+..+++|+.|++++|.+++ .+|+.++ ++++|++|++++|
T Consensus 422 ~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N 501 (876)
T 4ecn_A 422 RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501 (876)
T ss_dssp CCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC
T ss_pred ccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC
Confidence 78889999999999999999998 3899887 9999999999999
Q ss_pred cCCCCCcccccCCCCCccC
Q 030146 164 RLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 164 ~l~g~~p~~~~~l~~L~~L 182 (182)
++.|.+|..++++++|++|
T Consensus 502 ~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 502 PNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp TTCCSCCGGGGGCSSCCEE
T ss_pred CCCccChHHHhCCCCCCEE
Confidence 9999999999999999864
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.76 E-value=2.4e-19 Score=140.53 Aligned_cols=139 Identities=19% Similarity=0.239 Sum_probs=112.3
Q ss_pred hhcCCchHHHHHHHHHHhc-CCCCCCCCCCC---CCCCCCCcccceeeC---------CCCCEEEEEcCCCCCCcccccc
Q 030146 34 AVASGNSEGDALYALRRSL-SDPDNVLQSWD---PTLVNPCTWFHITCN---------QDNRVTRLDLGNSNLSGRLVPE 100 (182)
Q Consensus 34 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~w~---~~~~~~c~w~~v~c~---------~~~~l~~L~l~~n~l~~~~~~~ 100 (182)
..+...+|+++|++||..+ .++.+....|. ....++|.|.|+.|. ...+++.|++++|.+. .+|+.
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~ 99 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ 99 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSC
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChh
Confidence 3445568999999999987 35555567783 344689999999995 2468999999999988 77888
Q ss_pred ccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecccccCCCCCcccccC
Q 030146 101 LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVG 175 (182)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 175 (182)
+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+.++++|++|++++|++.+.+|..++.
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS 172 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence 888999999999999988 78888888889999999999888 77888888888888888888888788776654
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=7.4e-17 Score=120.24 Aligned_cols=114 Identities=21% Similarity=0.239 Sum_probs=89.9
Q ss_pred CCCCcccceeeCCC----------CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEc
Q 030146 67 VNPCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDL 136 (182)
Q Consensus 67 ~~~c~w~~v~c~~~----------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 136 (182)
.+.|.|.++.|... .+++.|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+++|++|++
T Consensus 16 ~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 16 QCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 57899999999642 46889999999999877888888888999999998887555555678888888888
Q ss_pred cCCcCCccCcccccCCCCCceEecccccCCCCCcccccCCCCCcc
Q 030146 137 YNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 137 s~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~ 181 (182)
++|++++..+..+..+++|+.|++++|+++ .+|..+..+++|++
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 139 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTH 139 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSE
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCE
Confidence 888888555555677788888888888777 67777777776664
No 7
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.2e-16 Score=116.11 Aligned_cols=115 Identities=25% Similarity=0.342 Sum_probs=98.8
Q ss_pred CCCcccceeeCC----------CCCEEEEEcCCCCCCccccc-cccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEc
Q 030146 68 NPCTWFHITCNQ----------DNRVTRLDLGNSNLSGRLVP-ELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDL 136 (182)
Q Consensus 68 ~~c~w~~v~c~~----------~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 136 (182)
..|.|..+.|.. ..+++.|++++|.+++..+. .+..+++|+.|++++|.+++..|..+..+++|++|++
T Consensus 6 C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp SEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 456677777753 23789999999999866554 3889999999999999999888889999999999999
Q ss_pred cCCcCCccCcccccCCCCCceEecccccCCCCCcccccCCCCCccC
Q 030146 137 YNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 137 s~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L 182 (182)
++|++++..|..|.++++|++|++++|++++..|..+..+++|++|
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 9999998877789999999999999999998889889999888764
No 8
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=1e-15 Score=109.49 Aligned_cols=115 Identities=27% Similarity=0.302 Sum_probs=96.0
Q ss_pred CCCcccceeeCC----------CCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEcc
Q 030146 68 NPCTWFHITCNQ----------DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY 137 (182)
Q Consensus 68 ~~c~w~~v~c~~----------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls 137 (182)
..|.|.++.|.. ..+++.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 5 C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp CEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 457788888853 2478999999999997666678899999999999999997666667899999999999
Q ss_pred CCcCCccCcccccCCCCCceEecccccCCCCCcccccCCCCCccC
Q 030146 138 NNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 138 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L 182 (182)
+|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEE
Confidence 999996666668899999999999999996555556778888753
No 9
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.65 E-value=1.1e-15 Score=111.84 Aligned_cols=114 Identities=25% Similarity=0.255 Sum_probs=70.5
Q ss_pred CCCcccceeeCCC----------CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEcc
Q 030146 68 NPCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY 137 (182)
Q Consensus 68 ~~c~w~~v~c~~~----------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls 137 (182)
..|.|.++.|... .+++.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 4567777777531 356777777777775544456667777777777777765444445666667777777
Q ss_pred CCcCCccCcccccCCCCCceEecccccCCCCCcccccCCCCCcc
Q 030146 138 NNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 138 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~ 181 (182)
+|++++..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 128 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD 128 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCE
Confidence 66666444444566666666666666666444444555555554
No 10
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.64 E-value=8.5e-16 Score=113.86 Aligned_cols=99 Identities=24% Similarity=0.300 Sum_probs=50.1
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
+++.|++++|.+++..+..|..+++|+.|++++|.+.+..|..+..+++|++|++++|+++...+..|.++++|++|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 45555555555554444445555555555555555554445555555555555555555553222234445555555555
Q ss_pred cccCCCCCcccccCCCCCc
Q 030146 162 DNRLTGQIPRELVGISSLK 180 (182)
Q Consensus 162 ~N~l~g~~p~~~~~l~~L~ 180 (182)
+|.+++..|..|..+++|+
T Consensus 113 ~N~l~~~~~~~~~~l~~L~ 131 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLN 131 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCEeCHHHcCCCCCCC
Confidence 5555544444444444444
No 11
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=2.6e-15 Score=109.18 Aligned_cols=114 Identities=25% Similarity=0.345 Sum_probs=96.9
Q ss_pred CCCcccceeeCC----------CCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEcc
Q 030146 68 NPCTWFHITCNQ----------DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY 137 (182)
Q Consensus 68 ~~c~w~~v~c~~----------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls 137 (182)
..|.+..+.|.. ...++.|++++|.++ .+|..+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 8 C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 8 CTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp CEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 345566666642 247899999999998 677899999999999999999998777889999999999999
Q ss_pred CCcCCccCcccccCCCCCceEecccccCCCCCcccccCCCCCccC
Q 030146 138 NNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 138 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L 182 (182)
+|++++..|..|.++++|++|++++|.+++..+..|..+++|++|
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEE
Confidence 999997777789999999999999999995555568888888753
No 12
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=3.1e-15 Score=110.81 Aligned_cols=101 Identities=21% Similarity=0.245 Sum_probs=76.2
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|++++..|..|..+++|++|++
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence 45777777777777665666777777888888888877666666777788888888888887666777777888888888
Q ss_pred ccccCCCCCcccccCCCCCcc
Q 030146 161 NDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~ 181 (182)
++|++++..|..|..+++|++
T Consensus 137 ~~N~l~~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 137 YDNQITTVAPGAFDTLHSLST 157 (220)
T ss_dssp TTSCCCCBCTTTTTTCTTCCE
T ss_pred CCCcCCEECHHHhcCCCCCCE
Confidence 888887766777777777765
No 13
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=3.9e-15 Score=110.30 Aligned_cols=115 Identities=20% Similarity=0.263 Sum_probs=99.4
Q ss_pred CCCcccceeeCC----------CCCEEEEEcCCCCCCcccc-ccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEc
Q 030146 68 NPCTWFHITCNQ----------DNRVTRLDLGNSNLSGRLV-PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDL 136 (182)
Q Consensus 68 ~~c~w~~v~c~~----------~~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 136 (182)
..|.|..+.|.. ...++.|++++|.+++..+ ..|..+++|+.|++++|.+++..+..+..+++|++|++
T Consensus 9 C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 9 CRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 456777777753 2357899999999997654 44789999999999999999877778999999999999
Q ss_pred cCCcCCccCcccccCCCCCceEecccccCCCCCcccccCCCCCccC
Q 030146 137 YNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 137 s~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L 182 (182)
++|.+++..+..|.++++|++|++++|++++..|..|..+++|++|
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence 9999997777779999999999999999998888999999998764
No 14
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=8.1e-15 Score=111.52 Aligned_cols=100 Identities=26% Similarity=0.303 Sum_probs=61.2
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
.++.|++++|.+.+..+..|..+++|+.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 46677777777775555566677777777777777764444445566666666666666664444445556666666666
Q ss_pred cccCCCCCcccccCCCCCcc
Q 030146 162 DNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 162 ~N~l~g~~p~~~~~l~~L~~ 181 (182)
+|.+++..+..+..+++|++
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~ 137 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTY 137 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCE
T ss_pred CCccCeeCHHHhCcCcCCCE
Confidence 66665444444555555543
No 15
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.58 E-value=1e-14 Score=108.05 Aligned_cols=103 Identities=25% Similarity=0.283 Sum_probs=92.4
Q ss_pred CCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
..+++.|++++|.+.+..|..|..+++|+.|++++|.++...+..+..+++|++|++++|++++..|..|..+++|+.|+
T Consensus 55 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 55 YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence 35799999999999988889999999999999999999966555678999999999999999988888899999999999
Q ss_pred cccccCCCCCcccccCCCCCccC
Q 030146 160 LNDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 160 L~~N~l~g~~p~~~~~l~~L~~L 182 (182)
+++|++++..+..+..+++|++|
T Consensus 135 L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 135 LYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCCcCCEECHHHHhCCCCCCEE
Confidence 99999997777778888888753
No 16
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=1e-14 Score=109.84 Aligned_cols=102 Identities=23% Similarity=0.232 Sum_probs=69.2
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 138 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEEC
Confidence 45667777777777655556667777777777777777555555667777777777777777544445667777777777
Q ss_pred ccccCCCCCcccccCCCCCccC
Q 030146 161 NDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~L 182 (182)
++|.+++..+..+..+++|++|
T Consensus 139 s~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 139 NTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCcCCccCHHHcCcCcCCCEE
Confidence 7777775555566777776653
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.56 E-value=6.9e-15 Score=123.07 Aligned_cols=102 Identities=23% Similarity=0.131 Sum_probs=88.2
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
..++.|+|++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|++|++++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47899999999999777778999999999999999999777777999999999999999999665667889999999999
Q ss_pred ccccCCCCCcccccCCCCCccC
Q 030146 161 NDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~L 182 (182)
++|++++..+..|+++++|++|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L 153 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKEL 153 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEE
T ss_pred CCCcCCCCChhhhhcCcccCee
Confidence 9999986656678888888764
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.56 E-value=8.9e-15 Score=121.12 Aligned_cols=102 Identities=24% Similarity=0.234 Sum_probs=87.9
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+++..|..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 47899999999999877888999999999999999999877788999999999999999999766666899999999999
Q ss_pred ccccCCC-CCcccccCCCCCccC
Q 030146 161 NDNRLTG-QIPRELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g-~~p~~~~~l~~L~~L 182 (182)
++|.+++ ..|..++++++|++|
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCCcccccchhhhhhccCCccEE
Confidence 9999886 456778888888754
No 19
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=3.3e-14 Score=101.22 Aligned_cols=102 Identities=20% Similarity=0.237 Sum_probs=83.6
Q ss_pred CCCcccceeeCC----------CCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEcc
Q 030146 68 NPCTWFHITCNQ----------DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY 137 (182)
Q Consensus 68 ~~c~w~~v~c~~----------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls 137 (182)
..|.|..+.|.. ..+++.|++++|.+++..|..|..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 7 C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 7 CSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp CEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 346677666642 2468889999999998778889999999999999999997666667889999999999
Q ss_pred CCcCCccCcccccCCCCCceEecccccCCCCC
Q 030146 138 NNNISGKIPPSLAKLKSLVFLRLNDNRLTGQI 169 (182)
Q Consensus 138 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~ 169 (182)
+|++++..+..|..+++|++|++++|+++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99999655556888999999999999988553
No 20
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.53 E-value=3.5e-15 Score=116.01 Aligned_cols=102 Identities=34% Similarity=0.619 Sum_probs=92.1
Q ss_pred CCEEEEEcCC-CCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 81 NRVTRLDLGN-SNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 81 ~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
.+++.|++++ |.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 5788999995 889888999999999999999999999988898999999999999999999988999999999999999
Q ss_pred cccccCCCCCcccccCCC-CCccC
Q 030146 160 LNDNRLTGQIPRELVGIS-SLKVV 182 (182)
Q Consensus 160 L~~N~l~g~~p~~~~~l~-~L~~L 182 (182)
+++|.++|.+|..++.++ +|++|
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L 179 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSM 179 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEE
T ss_pred CcCCcccCcCCHHHhhhhhcCcEE
Confidence 999999989999998887 77653
No 21
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.53 E-value=2.4e-14 Score=112.09 Aligned_cols=99 Identities=22% Similarity=0.256 Sum_probs=71.7
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
+++.|++++|.+.+ +|+.+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|+.|+++
T Consensus 207 ~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 207 NLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp TCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred CCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence 45666666666663 45556667777777777777776777777777777777777777777777777777777888887
Q ss_pred cccCCCCCcccccCCCCCcc
Q 030146 162 DNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 162 ~N~l~g~~p~~~~~l~~L~~ 181 (182)
+|++.+.+|+.++++++|+.
T Consensus 286 ~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp TCTTCCCCCGGGGGSCTTCE
T ss_pred CCCchhhccHHHhhccCceE
Confidence 77777777777777777654
No 22
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.53 E-value=7.9e-15 Score=126.46 Aligned_cols=92 Identities=37% Similarity=0.613 Sum_probs=88.1
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
..++.|++++|.++|.+|..++.++.|+.|++++|.++|.+|..++.+++|+.|++++|+++|.+|..+..++.|++|++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccc
Q 030146 161 NDNRLTGQIPRE 172 (182)
Q Consensus 161 ~~N~l~g~~p~~ 172 (182)
++|+++|.+|..
T Consensus 712 s~N~l~g~iP~~ 723 (768)
T 3rgz_A 712 SNNNLSGPIPEM 723 (768)
T ss_dssp CSSEEEEECCSS
T ss_pred cCCcccccCCCc
Confidence 999999999963
No 23
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.53 E-value=5.7e-14 Score=104.55 Aligned_cols=102 Identities=24% Similarity=0.287 Sum_probs=89.4
Q ss_pred CCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
..+++.|++++|.+....+..|..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|+
T Consensus 63 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 141 (229)
T 3e6j_A 63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEE
T ss_pred ccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEE
Confidence 357999999999998665566789999999999999999776667889999999999999999 8899999999999999
Q ss_pred cccccCCCCCcccccCCCCCccC
Q 030146 160 LNDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 160 L~~N~l~g~~p~~~~~l~~L~~L 182 (182)
+++|++++..+..+..+++|+.|
T Consensus 142 L~~N~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 142 LDQNQLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcCCccCHHHHhCCCCCCEE
Confidence 99999996666678888888753
No 24
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=6.3e-14 Score=105.46 Aligned_cols=102 Identities=22% Similarity=0.253 Sum_probs=84.2
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence 57889999999998766677888899999999999998666666788899999999999998655557888899999999
Q ss_pred ccccCCCCCcccccCCCCCccC
Q 030146 161 NDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~L 182 (182)
++|++++..+..+..+++|++|
T Consensus 163 ~~N~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 163 STNQLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCcCCccCHHHHhCCCCCCEE
Confidence 9999987666678888887753
No 25
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=6.5e-14 Score=99.72 Aligned_cols=97 Identities=29% Similarity=0.320 Sum_probs=84.5
Q ss_pred EEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEeccc
Q 030146 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLND 162 (182)
Q Consensus 83 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (182)
.+.+++++|.++ .+|..+. ++++.|++++|.+++..|..+..+++|++|++++|++++..+..|.++++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 367999999998 5676653 8899999999999988888899999999999999999966666688999999999999
Q ss_pred ccCCCCCcccccCCCCCccC
Q 030146 163 NRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 163 N~l~g~~p~~~~~l~~L~~L 182 (182)
|++++..+..|..+++|++|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEE
T ss_pred CccCEeCHHHhcCCCCCCEE
Confidence 99996666678899988764
No 26
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=8.6e-14 Score=101.78 Aligned_cols=103 Identities=27% Similarity=0.288 Sum_probs=83.5
Q ss_pred CCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
..+++.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 130 (208)
T 2o6s_A 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEE
Confidence 35788999999999866556678889999999999999866666678899999999999999866555678889999999
Q ss_pred cccccCCCCCcccccCCCCCccC
Q 030146 160 LNDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 160 L~~N~l~g~~p~~~~~l~~L~~L 182 (182)
+++|.+++..+..+..+++|++|
T Consensus 131 l~~N~l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 131 LYQNQLKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCCccceeCHHHhccCCCccEE
Confidence 99999986655567778887753
No 27
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=1.2e-13 Score=98.67 Aligned_cols=86 Identities=24% Similarity=0.264 Sum_probs=59.6
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+.+..|..|..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 35677777777777666666777777777777777777544444567777777777777777443334677777777777
Q ss_pred ccccCC
Q 030146 161 NDNRLT 166 (182)
Q Consensus 161 ~~N~l~ 166 (182)
++|++.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 777776
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.50 E-value=6.9e-14 Score=113.64 Aligned_cols=101 Identities=23% Similarity=0.246 Sum_probs=87.2
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..+..+.++++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 47899999999999888888999999999999999999877888999999999999999999666666888999999999
Q ss_pred ccccCCCCCcccccCCCCCcc
Q 030146 161 NDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~ 181 (182)
++|++++..+..|.++++|++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~ 175 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMR 175 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCE
T ss_pred CCCCcceeCHhHHhcCCcccE
Confidence 999998555556667777664
No 29
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.50 E-value=5.7e-14 Score=110.59 Aligned_cols=101 Identities=28% Similarity=0.306 Sum_probs=81.1
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+.++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 47888999999988666667888899999999999988777777888899999999999988544444788889999999
Q ss_pred ccccCCCCCcc--cccCCCCCccC
Q 030146 161 NDNRLTGQIPR--ELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g~~p~--~~~~l~~L~~L 182 (182)
++|+++ .+|. .+.++++|++|
T Consensus 132 ~~n~l~-~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 132 LGNPYK-TLGETSLFSHLTKLQIL 154 (353)
T ss_dssp TTCCCS-SSCSSCSCTTCTTCCEE
T ss_pred CCCCCc-ccCchhhhccCCCCcEE
Confidence 999888 4554 67778877753
No 30
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=2.6e-14 Score=99.26 Aligned_cols=101 Identities=26% Similarity=0.250 Sum_probs=84.4
Q ss_pred CCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCcc-CcccccCCCCCceE
Q 030146 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGK-IPPSLAKLKSLVFL 158 (182)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~-~p~~~~~l~~L~~L 158 (182)
..+++.|++++|.+++. ..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++. .+..+..+++|++|
T Consensus 41 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence 46789999999999865 7788899999999999999977787777799999999999999853 34778899999999
Q ss_pred ecccccCCCCCc---ccccCCCCCccC
Q 030146 159 RLNDNRLTGQIP---RELVGISSLKVV 182 (182)
Q Consensus 159 ~L~~N~l~g~~p---~~~~~l~~L~~L 182 (182)
++++|++++..+ ..+..+++|++|
T Consensus 119 ~l~~N~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 119 DLFNCEVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp ECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred eCcCCcccchHHHHHHHHHHCCCcccc
Confidence 999999986544 467888888764
No 31
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.49 E-value=1.5e-13 Score=104.66 Aligned_cols=100 Identities=27% Similarity=0.275 Sum_probs=51.4
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
+++.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|+++
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence 44455555555554333334455555555555555554444344555555555555555554444444555555555555
Q ss_pred cccCCCCCcccccCCCCCcc
Q 030146 162 DNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 162 ~N~l~g~~p~~~~~l~~L~~ 181 (182)
+|++++..|..+..+++|++
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~ 209 (272)
T 3rfs_A 190 QNQLKSVPDGVFDRLTSLQY 209 (272)
T ss_dssp SSCCSCCCTTTTTTCTTCCE
T ss_pred CCcCCccCHHHHhCCcCCCE
Confidence 55555544444555555543
No 32
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.49 E-value=1.9e-13 Score=104.12 Aligned_cols=103 Identities=24% Similarity=0.209 Sum_probs=83.2
Q ss_pred CCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
..+++.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence 35788888888888876666678888899999999988876666678888899999999988866666678888999999
Q ss_pred cccccCCCCCcccccCCCCCccC
Q 030146 160 LNDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 160 L~~N~l~g~~p~~~~~l~~L~~L 182 (182)
+++|++++..+..+..+++|++|
T Consensus 164 l~~n~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 164 LSYNQLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCcCccCHHHhcCCccCCEE
Confidence 99999887666667788887754
No 33
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=7.3e-14 Score=110.57 Aligned_cols=99 Identities=22% Similarity=0.188 Sum_probs=53.6
Q ss_pred CEEEEEcCCCCCCcccccccc-CCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 82 RVTRLDLGNSNLSGRLVPELG-KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.++.|++++|.+++..+..+. .+++|+.|++++|.+.+..+..+..+++|++|++++|++++..+..|.++++|+.|+|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 355666666666654444444 5556666666666655444444555555555555555555443444555555555555
Q ss_pred ccccCCCCCcccccCCCCCc
Q 030146 161 NDNRLTGQIPRELVGISSLK 180 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~ 180 (182)
++|++++..|..|..+++|+
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~ 139 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQ 139 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCC
T ss_pred CCCcccEECHHHhCCcccCC
Confidence 55555544444455444444
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.48 E-value=1.1e-13 Score=115.87 Aligned_cols=102 Identities=23% Similarity=0.252 Sum_probs=68.6
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+.+..|..|..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+..++++++|++|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 45666666666666555566666677777777777766655666667777777777777776544456677777777777
Q ss_pred ccccCCC-CCcccccCCCCCccC
Q 030146 161 NDNRLTG-QIPRELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g-~~p~~~~~l~~L~~L 182 (182)
++|.+++ .+|..++++++|++|
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L 158 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHV 158 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEE
T ss_pred CCCcccceechHhHhhcCCCCEE
Confidence 7777764 567777777777653
No 35
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.48 E-value=7.2e-14 Score=98.89 Aligned_cols=99 Identities=28% Similarity=0.295 Sum_probs=82.8
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCc--ccccCCCCCceE
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP--PSLAKLKSLVFL 158 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~L 158 (182)
.+++.|++++|.+++. ..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++ +| ..+..+++|+.|
T Consensus 49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSL 125 (168)
T ss_dssp GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEE
T ss_pred CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCEE
Confidence 5688999999998865 778889999999999999997777777779999999999999985 33 678889999999
Q ss_pred ecccccCCCCCc---ccccCCCCCccC
Q 030146 159 RLNDNRLTGQIP---RELVGISSLKVV 182 (182)
Q Consensus 159 ~L~~N~l~g~~p---~~~~~l~~L~~L 182 (182)
++++|++++..+ ..+..+++|++|
T Consensus 126 ~l~~N~l~~~~~~~~~~~~~l~~L~~L 152 (168)
T 2ell_A 126 DLFNCEVTNLNDYRESVFKLLPQLTYL 152 (168)
T ss_dssp ECCSSGGGTSTTHHHHHHTTCSSCCEE
T ss_pred EeeCCcCcchHHHHHHHHHhCccCcEe
Confidence 999999985444 378888888764
No 36
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.47 E-value=1.3e-13 Score=100.01 Aligned_cols=91 Identities=29% Similarity=0.361 Sum_probs=84.6
Q ss_pred CCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
..+++.|++++|.+++..|..|..+++|+.|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 45799999999999988899999999999999999999988888899999999999999999998899999999999999
Q ss_pred cccccCCCCCc
Q 030146 160 LNDNRLTGQIP 170 (182)
Q Consensus 160 L~~N~l~g~~p 170 (182)
+++|++++..+
T Consensus 133 L~~N~l~c~c~ 143 (192)
T 1w8a_A 133 LASNPFNCNCH 143 (192)
T ss_dssp CTTCCBCCSGG
T ss_pred eCCCCccCcCc
Confidence 99999987654
No 37
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.45 E-value=3.2e-13 Score=103.21 Aligned_cols=101 Identities=23% Similarity=0.242 Sum_probs=69.6
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccc-cCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNN-IQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
.+++.|++++|.+.+..+..+..+++|+.|++++|. +....|..+..+++|++|++++|.+++..|..+.++++|++|+
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence 456777777777766556667777777777777775 6554466677777777777777777765566677777777777
Q ss_pred cccccCCCCCcccccCCCCCcc
Q 030146 160 LNDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 160 L~~N~l~g~~p~~~~~l~~L~~ 181 (182)
+++|.+++..+..+..+++|++
T Consensus 136 l~~n~l~~~~~~~~~~l~~L~~ 157 (285)
T 1ozn_A 136 LQDNALQALPDDTFRDLGNLTH 157 (285)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcccccCHhHhccCCCccE
Confidence 7777777555555666776664
No 38
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=4.1e-14 Score=98.25 Aligned_cols=100 Identities=26% Similarity=0.366 Sum_probs=88.2
Q ss_pred CCEEEEEcCCCCCC-ccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 81 NRVTRLDLGNSNLS-GRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 81 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
.+++.+++++|.+. +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 46899999999998 78888889999999999999999965 6788999999999999999977888888899999999
Q ss_pred cccccCCCC-CcccccCCCCCccC
Q 030146 160 LNDNRLTGQ-IPRELVGISSLKVV 182 (182)
Q Consensus 160 L~~N~l~g~-~p~~~~~l~~L~~L 182 (182)
+++|.+++. .+..+..+++|++|
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred CCCCcCCChHHHHHHhhCCCCCEE
Confidence 999999852 34788888888764
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.44 E-value=4.4e-13 Score=112.23 Aligned_cols=102 Identities=23% Similarity=0.211 Sum_probs=74.8
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+++..+..|..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 46777777777777666667777777777777777777666667777777777777777777666777777777777777
Q ss_pred ccccCCCCCcccccCCCCCccC
Q 030146 161 NDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~L 182 (182)
++|.+++..|..++++++|++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKL 133 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEE
T ss_pred cCCccccccccccCCCCCCCEE
Confidence 7777775555667777777653
No 40
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=6.8e-13 Score=94.80 Aligned_cols=96 Identities=25% Similarity=0.247 Sum_probs=82.7
Q ss_pred EEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecccc
Q 030146 84 TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDN 163 (182)
Q Consensus 84 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N 163 (182)
+.+++++|.++ .+|..+. ++|+.|++++|.+.+..|..+..+++|++|++++|++++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57899999997 6777664 89999999999999888888999999999999999999655555789999999999999
Q ss_pred cCCCCCcccccCCCCCccC
Q 030146 164 RLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 164 ~l~g~~p~~~~~l~~L~~L 182 (182)
++++..+..|..+++|++|
T Consensus 92 ~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEE
T ss_pred ccceeCHHHhccccCCCEE
Confidence 9996555568889988764
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.44 E-value=1.6e-13 Score=119.38 Aligned_cols=99 Identities=24% Similarity=0.292 Sum_probs=50.9
Q ss_pred EEEEEcCCCCCCccc-cccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCccc--ccCCCCCceEe
Q 030146 83 VTRLDLGNSNLSGRL-VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPS--LAKLKSLVFLR 159 (182)
Q Consensus 83 l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~--~~~l~~L~~L~ 159 (182)
++.|++++|...+.+ |..|.++++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|.. +.++++|++|+
T Consensus 50 L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~ 129 (844)
T 3j0a_A 50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129 (844)
T ss_dssp CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence 344444444322222 334555555555555555555545555555555555555555555444433 55555666666
Q ss_pred cccccCCCCCc-ccccCCCCCcc
Q 030146 160 LNDNRLTGQIP-RELVGISSLKV 181 (182)
Q Consensus 160 L~~N~l~g~~p-~~~~~l~~L~~ 181 (182)
+++|.+++..+ ..|+++++|++
T Consensus 130 Ls~N~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 130 LSKNQIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp EESCCCCCCCCCGGGGTCSSCCE
T ss_pred CCCCcccccccchhHhhCCCCCE
Confidence 66665554333 34555555554
No 42
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.44 E-value=2.9e-13 Score=113.39 Aligned_cols=101 Identities=18% Similarity=0.107 Sum_probs=76.8
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
..++.|++++|.+++..|..|..+++|+.|++++|.+.+..|..+..+++|++|++++|++++..|..++++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 46778888888888766777888888888888888887767777788888888888888887766777777777777877
Q ss_pred ccccCCCCCcccccCCCCCcc
Q 030146 161 NDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~ 181 (182)
++|.+++..|..+.++++|++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~ 133 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLES 133 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCE
T ss_pred cccCcccCCcchhccCCcccE
Confidence 777777544566666666664
No 43
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.43 E-value=3.3e-13 Score=109.23 Aligned_cols=102 Identities=25% Similarity=0.216 Sum_probs=75.6
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++..|..+.++++|++|++
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence 46777777777777666667777777888888888777666667777788888888888887666777777788888888
Q ss_pred ccccCCCCCcccccCCCCCccC
Q 030146 161 NDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~L 182 (182)
++|++++..+..+..+++|++|
T Consensus 379 ~~N~l~~~~~~~~~~l~~L~~L 400 (455)
T 3v47_A 379 DTNQLKSVPDGIFDRLTSLQKI 400 (455)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCccccCCHhHhccCCcccEE
Confidence 8888875544556677777653
No 44
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.43 E-value=7.2e-13 Score=101.25 Aligned_cols=101 Identities=25% Similarity=0.280 Sum_probs=68.9
Q ss_pred CCEEEEEcCCCC-CCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 81 NRVTRLDLGNSN-LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 81 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
.+++.|++++|. +....+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++..+..+..+++|+.|+
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 457777777776 6655466677777777777777777766666677777777777777777754445566777777777
Q ss_pred cccccCCCCCcccccCCCCCcc
Q 030146 160 LNDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 160 L~~N~l~g~~p~~~~~l~~L~~ 181 (182)
+++|.+++..+..+..+++|++
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDR 181 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCcccccCHHHhcCccccCE
Confidence 7777776444445666666654
No 45
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.43 E-value=8.4e-13 Score=101.58 Aligned_cols=84 Identities=27% Similarity=0.225 Sum_probs=37.7
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
+++.|++++|.+. .+|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|+.|+++
T Consensus 78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence 3444444444444 333444444444444444444443333344444444444444444443333333444444444444
Q ss_pred cccCC
Q 030146 162 DNRLT 166 (182)
Q Consensus 162 ~N~l~ 166 (182)
+|+++
T Consensus 157 ~N~l~ 161 (290)
T 1p9a_G 157 NNNLT 161 (290)
T ss_dssp TSCCS
T ss_pred CCcCC
Confidence 44444
No 46
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=2.1e-13 Score=96.50 Aligned_cols=98 Identities=28% Similarity=0.373 Sum_probs=68.9
Q ss_pred CCEEEEEcCCCCCC-ccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 81 NRVTRLDLGNSNLS-GRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 81 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
.+++.|++++|.+. +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45777777777776 56666667777777777777777754 5667777777777777777765666666677777777
Q ss_pred cccccCCCCCc--ccccCCCCCcc
Q 030146 160 LNDNRLTGQIP--RELVGISSLKV 181 (182)
Q Consensus 160 L~~N~l~g~~p--~~~~~l~~L~~ 181 (182)
+++|.+++ +| ..+..+++|++
T Consensus 102 Ls~N~l~~-~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 102 LSGNKLKD-ISTLEPLKKLECLKS 124 (168)
T ss_dssp CBSSSCCS-SGGGGGGSSCSCCCE
T ss_pred ccCCccCc-chhHHHHhcCCCCCE
Confidence 77777763 33 56667776664
No 47
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.42 E-value=3e-13 Score=109.51 Aligned_cols=102 Identities=23% Similarity=0.280 Sum_probs=94.7
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.+++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+.++++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 46899999999999888889999999999999999999888889999999999999999999877888999999999999
Q ss_pred ccccCCCCCcccccCCCCCccC
Q 030146 161 NDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~L 182 (182)
++|.+++..|..+..+++|++|
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L 376 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKEL 376 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCcccccChhhccccccccEE
Confidence 9999998889899999998864
No 48
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.42 E-value=9.7e-13 Score=99.97 Aligned_cols=100 Identities=27% Similarity=0.335 Sum_probs=51.5
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
+++.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 110 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence 34455555555544444444555555555555555554333334555555555555555554333345555666666666
Q ss_pred cccCCCCCcccccCCCCCcc
Q 030146 162 DNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 162 ~N~l~g~~p~~~~~l~~L~~ 181 (182)
+|++++..+..+..+++|+.
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~ 209 (270)
T 2o6q_A 190 NNQLKRVPEGAFDSLEKLKM 209 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCE
T ss_pred CCcCCcCCHHHhccccCCCE
Confidence 66655433334555555543
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.42 E-value=4.2e-13 Score=112.24 Aligned_cols=102 Identities=23% Similarity=0.249 Sum_probs=88.4
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..|+++++|++|++
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~L 155 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 155 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecc
Confidence 57899999999999777778999999999999999999766677899999999999999999665567899999999999
Q ss_pred ccccCCC-CCcccccCCCCCccC
Q 030146 161 NDNRLTG-QIPRELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g-~~p~~~~~l~~L~~L 182 (182)
++|.+++ .+|..++.+++|++|
T Consensus 156 s~N~l~~~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 156 AHNLIQSFKLPEYFSNLTNLEHL 178 (635)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEE
T ss_pred ccCccccCCCchhhccchhhhhh
Confidence 9999975 467888888888754
No 50
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.42 E-value=6.9e-13 Score=100.92 Aligned_cols=101 Identities=23% Similarity=0.246 Sum_probs=58.6
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 131 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence 34566666666665444445556666666666666665554455556666666666666665444434556666666666
Q ss_pred ccccCCC-CCcccccCCCCCcc
Q 030146 161 NDNRLTG-QIPRELVGISSLKV 181 (182)
Q Consensus 161 ~~N~l~g-~~p~~~~~l~~L~~ 181 (182)
++|.+++ .+|..+..+++|++
T Consensus 132 ~~n~l~~~~l~~~~~~l~~L~~ 153 (276)
T 2z62_A 132 AHNLIQSFKLPEYFSNLTNLEH 153 (276)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCE
T ss_pred cCCccceecCchhhccCCCCCE
Confidence 6666654 24555666655554
No 51
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.41 E-value=6.3e-13 Score=101.13 Aligned_cols=102 Identities=23% Similarity=0.131 Sum_probs=91.3
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46899999999999777778999999999999999999777778999999999999999999877788999999999999
Q ss_pred ccccCCCCCcccccCCCCCccC
Q 030146 161 NDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~L 182 (182)
++|.+++..+..+..+++|++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L 129 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKEL 129 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEE
T ss_pred CCCCccccCchhcccCCCCCEE
Confidence 9999997666678888888764
No 52
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.41 E-value=5e-13 Score=111.27 Aligned_cols=99 Identities=23% Similarity=0.269 Sum_probs=79.3
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+.+..+..|..+++|+.|++++|.+++..|..+..+++|++|++++|+++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 56888888888888776678888888888888888888777777888888888888888888 56665 7788888888
Q ss_pred ccccCCC-CCcccccCCCCCccC
Q 030146 161 NDNRLTG-QIPRELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g-~~p~~~~~l~~L~~L 182 (182)
++|++++ .+|..++++++|++|
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L 151 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFL 151 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEE
T ss_pred CCCCccccCchHhhcccCcccEE
Confidence 8888875 456778888887754
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.41 E-value=8.1e-13 Score=103.12 Aligned_cols=112 Identities=29% Similarity=0.437 Sum_probs=90.5
Q ss_pred CCCcccceeeCC----------CCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEcc
Q 030146 68 NPCTWFHITCNQ----------DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY 137 (182)
Q Consensus 68 ~~c~w~~v~c~~----------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls 137 (182)
+.|.|..+.|.. ..+++.|++++|.+.+..+..+..+++|+.|++++|.+++..|..+..+++|++|+++
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 346788888753 2478999999999997777789999999999999999998778889999999999999
Q ss_pred CCcCCccCcccccCCCCCceEecccccCCCCCcccccCCCCCccC
Q 030146 138 NNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 138 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L 182 (182)
+|.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 152 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEE
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEE
Confidence 99988 6666554 778888888888875555567777777653
No 54
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.41 E-value=5e-13 Score=109.01 Aligned_cols=99 Identities=24% Similarity=0.297 Sum_probs=54.5
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
+++.|++++|.+++..+..|..+++|+.|++++|.+.+..|..+..+++|++|++++|+++...+..|.++++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 45556666666655545555556666666666665555555555555556666665555553333334555555555555
Q ss_pred cccCCCCCcccccCCCCCc
Q 030146 162 DNRLTGQIPRELVGISSLK 180 (182)
Q Consensus 162 ~N~l~g~~p~~~~~l~~L~ 180 (182)
+|.+++..|..+.++++|+
T Consensus 113 ~n~i~~~~~~~~~~l~~L~ 131 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLK 131 (477)
T ss_dssp TSCCCEECTTTTTTCTTCC
T ss_pred CCccccCChhHccccccCC
Confidence 5555544444455554444
No 55
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.40 E-value=1.4e-12 Score=100.34 Aligned_cols=101 Identities=30% Similarity=0.277 Sum_probs=88.4
Q ss_pred CCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
..+++.|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|+++...+..+..+++|+.|+
T Consensus 99 l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178 (290)
T ss_dssp CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEE
Confidence 35789999999999977778899999999999999999977677788999999999999999955445578899999999
Q ss_pred cccccCCCCCcccccCCCCCcc
Q 030146 160 LNDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 160 L~~N~l~g~~p~~~~~l~~L~~ 181 (182)
+++|+++ .+|..+...++|+.
T Consensus 179 L~~N~l~-~ip~~~~~~~~L~~ 199 (290)
T 1p9a_G 179 LQENSLY-TIPKGFFGSHLLPF 199 (290)
T ss_dssp CCSSCCC-CCCTTTTTTCCCSE
T ss_pred CCCCcCC-ccChhhcccccCCe
Confidence 9999999 88888888777765
No 56
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.40 E-value=8.4e-13 Score=104.43 Aligned_cols=101 Identities=23% Similarity=0.285 Sum_probs=80.3
Q ss_pred CCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
..+++.|++++|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..|..|.++++|+.|+
T Consensus 63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence 35788899999999877667788889999999999998876666788888999999999998877777888888999999
Q ss_pred cccccCCCCCccc-c---cCCCCCcc
Q 030146 160 LNDNRLTGQIPRE-L---VGISSLKV 181 (182)
Q Consensus 160 L~~N~l~g~~p~~-~---~~l~~L~~ 181 (182)
|++|.+++ +|.. + ..+++|+.
T Consensus 143 L~~N~l~~-l~~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 143 LSQNQISR-FPVELIKDGNKLPKLML 167 (361)
T ss_dssp CCSSCCCS-CCGGGTC----CTTCCE
T ss_pred CCCCcCCe-eCHHHhcCcccCCcCCE
Confidence 99998884 4544 3 45666654
No 57
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.40 E-value=4.4e-13 Score=110.37 Aligned_cols=99 Identities=25% Similarity=0.246 Sum_probs=74.8
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+.+..|..|..+++|+.|++++|.+++..|..+..+++|++|++++|+++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 46778888888887666667777888888888888887666777778888888888888877 56655 6777888888
Q ss_pred ccccCCC-CCcccccCCCCCccC
Q 030146 161 NDNRLTG-QIPRELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g-~~p~~~~~l~~L~~L 182 (182)
++|.+++ .+|..++++++|++|
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L 120 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFL 120 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEE
T ss_pred cCCccccccchhhhccCCcceEE
Confidence 8888775 467777777777653
No 58
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.40 E-value=9.7e-13 Score=110.48 Aligned_cols=101 Identities=20% Similarity=0.149 Sum_probs=83.6
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
+++.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..++.+++|++|++++|.+++..+..|+++++|++|+++
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 57788888888887777788888999999999999888777778888999999999999885444456888999999999
Q ss_pred cccCCCCCcccccCCCCCccC
Q 030146 162 DNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 162 ~N~l~g~~p~~~~~l~~L~~L 182 (182)
+|.+++..|..+..+++|++|
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 156 NNNLERIEDDTFQATTSLQNL 176 (597)
T ss_dssp SSCCCBCCTTTTTTCTTCCEE
T ss_pred CCcCCCCChhhhhcCCcCcEE
Confidence 999988777788888888754
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.39 E-value=8e-13 Score=101.91 Aligned_cols=101 Identities=22% Similarity=0.269 Sum_probs=74.2
Q ss_pred CCEEEEEcCCCCCCc-cccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 81 NRVTRLDLGNSNLSG-RLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
.+++.|++++|.+.+ ..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..+..+..+++|+.|+
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 229 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229 (306)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEE
T ss_pred cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeE
Confidence 467777777777765 4566677777788888888877766677777777888888888887765555677778888888
Q ss_pred cccccCCCCCcccccCCC-CCcc
Q 030146 160 LNDNRLTGQIPRELVGIS-SLKV 181 (182)
Q Consensus 160 L~~N~l~g~~p~~~~~l~-~L~~ 181 (182)
+++|++++..|..+..++ +|++
T Consensus 230 L~~N~l~~~~~~~~~~~~~~L~~ 252 (306)
T 2z66_A 230 YSLNHIMTSKKQELQHFPSSLAF 252 (306)
T ss_dssp CTTSCCCBCSSSSCCCCCTTCCE
T ss_pred CCCCCCcccCHHHHHhhhccCCE
Confidence 888888777777777764 6654
No 60
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=5.9e-13 Score=114.31 Aligned_cols=98 Identities=28% Similarity=0.431 Sum_probs=87.5
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
..++.|+|++|.+. .+|..+..+++|+.|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..++++++|++|+|
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence 56888999999998 67777888999999999999999 78888999999999999999999 78999999999999999
Q ss_pred ccccCCCCCcccccCCCCCccC
Q 030146 161 NDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~L 182 (182)
++|.++ .+|..|+++++|++|
T Consensus 301 ~~N~l~-~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 301 FDNMVT-TLPWEFGNLCNLQFL 321 (727)
T ss_dssp CSSCCC-CCCSSTTSCTTCCCE
T ss_pred CCCCCC-ccChhhhcCCCccEE
Confidence 999987 888889999988764
No 61
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.39 E-value=1.4e-12 Score=103.80 Aligned_cols=101 Identities=21% Similarity=0.211 Sum_probs=76.2
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCccc-ccCCCCCceEe
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPS-LAKLKSLVFLR 159 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~-~~~l~~L~~L~ 159 (182)
.+++.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.++ .+|.. +.++++|++|+
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence 35677788888877666667778888888888888888766667778888888888888887 44443 57788888888
Q ss_pred cccccCCCCCcccccCCCCCccC
Q 030146 160 LNDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 160 L~~N~l~g~~p~~~~~l~~L~~L 182 (182)
+++|.+++..|..+..+++|++|
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L 170 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNL 170 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEE
T ss_pred CCCCccCccChhhccCCCCCCEE
Confidence 88888876666667777777653
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.39 E-value=1.1e-12 Score=106.21 Aligned_cols=101 Identities=23% Similarity=0.282 Sum_probs=77.1
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
..++.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|+++...+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 46778888888888777777888888888888888888666677888888888888888888554556778888888888
Q ss_pred ccccCCCCCcccccCCCCCcc
Q 030146 161 NDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~ 181 (182)
++|.+++..+..|.++++|++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~ 164 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRR 164 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCE
T ss_pred CCCcccccCHHHhhhCcccCE
Confidence 888877544445666666654
No 63
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.39 E-value=1.3e-12 Score=102.59 Aligned_cols=97 Identities=24% Similarity=0.260 Sum_probs=53.3
Q ss_pred CCcccceeeCCC------------CCEEEEEcCC-CCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEE
Q 030146 69 PCTWFHITCNQD------------NRVTRLDLGN-SNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLD 135 (182)
Q Consensus 69 ~c~w~~v~c~~~------------~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 135 (182)
.|.|..+.|... .+++.|+|++ |.+++..+..|..+++|+.|+|++|.+++..|..|..+++|+.|+
T Consensus 7 ~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred cccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 477777666532 2355556654 555554445555566666666666666555555555566666666
Q ss_pred ccCCcCCccCcccccCCCCCceEecccccCC
Q 030146 136 LYNNNISGKIPPSLAKLKSLVFLRLNDNRLT 166 (182)
Q Consensus 136 ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 166 (182)
|++|+|++..+..+..++ |+.|+|.+|++.
T Consensus 87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 666666533333333333 566666665554
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.38 E-value=9.2e-13 Score=101.59 Aligned_cols=101 Identities=22% Similarity=0.277 Sum_probs=72.4
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCC-CCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG-TIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
.+++.|++++|.+.+..+..+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|+.|+
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 456677777777766666667777777777777777765 4566677777777788877777766667777777788888
Q ss_pred cccccCCCCCcccccCCCCCcc
Q 030146 160 LNDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 160 L~~N~l~g~~p~~~~~l~~L~~ 181 (182)
+++|.+++..+..+..+++|++
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCE
T ss_pred CCCCccCccChhhccCcccCCE
Confidence 8888777655556677777664
No 65
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.38 E-value=7e-13 Score=98.90 Aligned_cols=98 Identities=19% Similarity=0.227 Sum_probs=76.3
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccc-cCCCCCcccCCCCCCCEEEccC-CcCCccCcccccCCCCCceE
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNN-IQGTIPVELGNLKSLISLDLYN-NNISGKIPPSLAKLKSLVFL 158 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~ls~-n~l~~~~p~~~~~l~~L~~L 158 (182)
.+++.|++++|.+++..+..|..+++|+.|++++|. +++..+..+..+++|++|++++ |.+++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 468888888888886666678888888888888886 7755555778888888888887 88886555677888888888
Q ss_pred ecccccCCCCCcccccCCCCCc
Q 030146 159 RLNDNRLTGQIPRELVGISSLK 180 (182)
Q Consensus 159 ~L~~N~l~g~~p~~~~~l~~L~ 180 (182)
++++|.+++ +|. +..+++|+
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~ 130 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTD 130 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCC
T ss_pred eCCCCCCcc-ccc-cccccccc
Confidence 888888874 665 66666664
No 66
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=7.7e-13 Score=96.07 Aligned_cols=97 Identities=21% Similarity=0.325 Sum_probs=58.7
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCc-CCccCcccccCCCCCceEe
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN-ISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l~~L~~L~ 159 (182)
.+++.|++++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|. ++ .+| .+..+++|+.|+
T Consensus 88 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~ 165 (197)
T 4ezg_A 88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLN 165 (197)
T ss_dssp TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEE
T ss_pred CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEE
Confidence 456666666666665555666666666666666666665555556666666666666665 43 444 456666666666
Q ss_pred cccccCCCCCcccccCCCCCcc
Q 030146 160 LNDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 160 L~~N~l~g~~p~~~~~l~~L~~ 181 (182)
+++|.+++ ++ .+..+++|++
T Consensus 166 l~~n~i~~-~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 166 IQFDGVHD-YR-GIEDFPKLNQ 185 (197)
T ss_dssp CTTBCCCC-CT-TGGGCSSCCE
T ss_pred CCCCCCcC-hH-HhccCCCCCE
Confidence 66666653 33 4555555554
No 67
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.38 E-value=6.2e-13 Score=111.67 Aligned_cols=102 Identities=17% Similarity=0.145 Sum_probs=88.4
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.++++++.+....+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..|+++++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 35788999999988655556788999999999999999887889999999999999999999877778899999999999
Q ss_pred ccccCCCCCcccccCCCCCccC
Q 030146 161 NDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~L 182 (182)
++|.+++..+..|.++++|++|
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEE
T ss_pred eCCCCCCCCHHHhccCCCCCEE
Confidence 9999995555556889988764
No 68
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.37 E-value=1.2e-12 Score=111.14 Aligned_cols=102 Identities=25% Similarity=0.265 Sum_probs=72.7
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..|..|+++++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 45667777777777666666777777777777777777444445777777777777777777555566777778888888
Q ss_pred ccccCCCCCcccccCCCCCccC
Q 030146 161 NDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~L 182 (182)
++|.+++..|..++++++|++|
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEE
T ss_pred CCCcccccCchhhcccccCCEE
Confidence 8887777777777777777653
No 69
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.37 E-value=2.1e-12 Score=93.73 Aligned_cols=95 Identities=33% Similarity=0.398 Sum_probs=84.0
Q ss_pred EEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecccc
Q 030146 84 TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDN 163 (182)
Q Consensus 84 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N 163 (182)
+.+++++++++ .+|..+. ++++.|++++|.++ .+|..+..+++|+.|++++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46899999998 6676554 68999999999998 67888999999999999999999777778999999999999999
Q ss_pred cCCCCCcccccCCCCCccC
Q 030146 164 RLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 164 ~l~g~~p~~~~~l~~L~~L 182 (182)
.+++..|..|..+++|++|
T Consensus 89 ~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEE
T ss_pred ccCEeCHHHhCCCCCCCEE
Confidence 9998777789999998764
No 70
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.37 E-value=2e-12 Score=100.80 Aligned_cols=110 Identities=24% Similarity=0.360 Sum_probs=82.0
Q ss_pred CCCcccceeeCC----------CCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEcc
Q 030146 68 NPCTWFHITCNQ----------DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY 137 (182)
Q Consensus 68 ~~c~w~~v~c~~----------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls 137 (182)
..|.+..+.|.. ...++.|++++|.+++..+..+..+++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 456787777753 2478899999999997767789999999999999999998778889999999999999
Q ss_pred CCcCCccCcccccCCCCCceEecccccCCCCCcccccCCCCCc
Q 030146 138 NNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLK 180 (182)
Q Consensus 138 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~ 180 (182)
+|.++ .+|..+. ++|+.|++++|.+++..+..+.++++|+
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 148 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI 148 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCcccc
Confidence 99887 5555432 4566666666665544444445554444
No 71
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.37 E-value=1.3e-12 Score=106.63 Aligned_cols=101 Identities=24% Similarity=0.234 Sum_probs=67.6
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+.+..|..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+.++++|+.|++
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 135 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence 46777777777777666667777777777777777777544445666777777777777776655666666666666666
Q ss_pred ccccCCCCCcccccCCCCCcc
Q 030146 161 NDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~ 181 (182)
++|.+++..|..|..+++|++
T Consensus 136 ~~n~l~~~~~~~~~~l~~L~~ 156 (477)
T 2id5_A 136 GDNDLVYISHRAFSGLNSLEQ 156 (477)
T ss_dssp CCTTCCEECTTSSTTCTTCCE
T ss_pred CCCccceeChhhccCCCCCCE
Confidence 666666555555666655554
No 72
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=1.2e-12 Score=109.52 Aligned_cols=99 Identities=28% Similarity=0.332 Sum_probs=82.9
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccC-cccccCCCCCceEe
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI-PPSLAKLKSLVFLR 159 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L~ 159 (182)
.+++.|++++|.++ .+|..+..+++|+.|++++|.+++ +| .+..+++|+.|++++|++++.. |..++.+++|+.|+
T Consensus 463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 56899999999999 778899999999999999999996 66 7889999999999999999765 88899999999999
Q ss_pred cccccCCCCCcc---cccCCCCCccC
Q 030146 160 LNDNRLTGQIPR---ELVGISSLKVV 182 (182)
Q Consensus 160 L~~N~l~g~~p~---~~~~l~~L~~L 182 (182)
+++|++++..|. .+..+++|++|
T Consensus 540 L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 540 LQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred ecCCcCCCCccHHHHHHHHCcccCcc
Confidence 999999865442 22346777654
No 73
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.36 E-value=3.7e-13 Score=113.92 Aligned_cols=102 Identities=21% Similarity=0.341 Sum_probs=93.3
Q ss_pred CCCEEEEEcCCCCCCcc-----------------cccccc--CCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCc
Q 030146 80 DNRVTRLDLGNSNLSGR-----------------LVPELG--KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140 (182)
Q Consensus 80 ~~~l~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~ 140 (182)
..+++.|++++|.+++. +|..+. ++++|+.|++++|.+.+.+|..+..+++|++|++++|+
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 46799999999999985 899998 99999999999999999999999999999999999998
Q ss_pred -CCc-cCcccccCC------CCCceEecccccCCCCCcc--cccCCCCCccC
Q 030146 141 -ISG-KIPPSLAKL------KSLVFLRLNDNRLTGQIPR--ELVGISSLKVV 182 (182)
Q Consensus 141 -l~~-~~p~~~~~l------~~L~~L~L~~N~l~g~~p~--~~~~l~~L~~L 182 (182)
++| .+|..++.+ ++|++|++++|+++ .+|. .++++++|++|
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L 335 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGML 335 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEE
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEE
Confidence 998 889888776 89999999999999 8898 89999988764
No 74
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=4.2e-13 Score=95.79 Aligned_cols=97 Identities=23% Similarity=0.260 Sum_probs=78.9
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcc--cccCCCCCceEe
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP--SLAKLKSLVFLR 159 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~--~~~~l~~L~~L~ 159 (182)
+++.|++++|.+++. +.+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 688999999999864 67888999999999999998544444478899999999999997 5665 688889999999
Q ss_pred cccccCCCCCccc----ccCCCCCccC
Q 030146 160 LNDNRLTGQIPRE----LVGISSLKVV 182 (182)
Q Consensus 160 L~~N~l~g~~p~~----~~~l~~L~~L 182 (182)
+++|+++ .+|.. +..+++|++|
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~L 145 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVL 145 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEE
T ss_pred ecCCCCC-CcHhHHHHHHHHCCcccee
Confidence 9999988 56664 7788887753
No 75
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.36 E-value=7.9e-13 Score=105.28 Aligned_cols=101 Identities=19% Similarity=0.222 Sum_probs=87.1
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.++++++.++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..|..+.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 46888999999988554445788999999999999999777778999999999999999999877788999999999999
Q ss_pred ccccCCCCCccc-ccCCCCCccC
Q 030146 161 NDNRLTGQIPRE-LVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g~~p~~-~~~l~~L~~L 182 (182)
++|.++ .+|.. +.++++|++|
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTL 146 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCccC-cCCHHHhcCCCCCcEE
Confidence 999999 55554 6888888764
No 76
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.35 E-value=1.4e-12 Score=94.60 Aligned_cols=99 Identities=19% Similarity=0.251 Sum_probs=83.6
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+. .++.+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 66 ~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 66 HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 57889999999765 3357888999999999999998777888999999999999999999877888999999999999
Q ss_pred ccccCCCCCcccccCCCCCccC
Q 030146 161 NDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~L 182 (182)
++|.+.+.+| .+..+++|++|
T Consensus 144 ~~n~~i~~~~-~l~~l~~L~~L 164 (197)
T 4ezg_A 144 SYNGAITDIM-PLKTLPELKSL 164 (197)
T ss_dssp CSCTBCCCCG-GGGGCSSCCEE
T ss_pred cCCCCccccH-hhcCCCCCCEE
Confidence 9998444676 68888888754
No 77
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.35 E-value=2.3e-12 Score=109.34 Aligned_cols=99 Identities=22% Similarity=0.200 Sum_probs=45.8
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
+++.|++++|.+++..+..|..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+..|.++++|++|+++
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 105 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence 34445555554444333344444455555555554444444444444455555555554442222234444455555555
Q ss_pred cccCCCCCcccccCCCCCc
Q 030146 162 DNRLTGQIPRELVGISSLK 180 (182)
Q Consensus 162 ~N~l~g~~p~~~~~l~~L~ 180 (182)
+|.+++..|..|+++++|+
T Consensus 106 ~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 106 SNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp SSCCCCCCSCTTTTCTTCC
T ss_pred CCccCccChhHccccCCCC
Confidence 5544433334444444444
No 78
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.35 E-value=3.6e-12 Score=90.87 Aligned_cols=91 Identities=23% Similarity=0.236 Sum_probs=79.5
Q ss_pred CCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
..+++.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 35799999999999976666688999999999999999977776788999999999999999965555578899999999
Q ss_pred cccccCCCCCc
Q 030146 160 LNDNRLTGQIP 170 (182)
Q Consensus 160 L~~N~l~g~~p 170 (182)
+++|++.+..|
T Consensus 131 l~~N~~~~~~~ 141 (177)
T 2o6r_A 131 LHTNPWDCSCP 141 (177)
T ss_dssp CCSSCBCCCHH
T ss_pred ecCCCeeccCc
Confidence 99999997655
No 79
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.34 E-value=2.9e-12 Score=106.29 Aligned_cols=102 Identities=23% Similarity=0.249 Sum_probs=70.0
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..+..+++|++|++++|++++..+..++++++|++|++
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 45677777777777655566777777777777777777655566777777777777777776433335677777777777
Q ss_pred ccccCCC-CCcccccCCCCCccC
Q 030146 161 NDNRLTG-QIPRELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g-~~p~~~~~l~~L~~L 182 (182)
++|.+++ .+|..++++++|++|
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L 154 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHL 154 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CCCccceecChhhhcccCCCCEE
Confidence 7777765 467777777777653
No 80
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.34 E-value=2.2e-12 Score=107.90 Aligned_cols=96 Identities=28% Similarity=0.380 Sum_probs=87.9
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
.++.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.+++ +| .++++++|+.|+|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 47889999999996 565 999999999999999999 789999999999999999999995 77 89999999999999
Q ss_pred cccCCCCC-cccccCCCCCccC
Q 030146 162 DNRLTGQI-PRELVGISSLKVV 182 (182)
Q Consensus 162 ~N~l~g~~-p~~~~~l~~L~~L 182 (182)
+|++++.. |..++.+++|+.|
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEE
T ss_pred CCCCCCCCCcHHHhcCCCCCEE
Confidence 99999776 9999999999864
No 81
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.33 E-value=4.2e-12 Score=105.31 Aligned_cols=102 Identities=23% Similarity=0.131 Sum_probs=91.4
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+++..+..|..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 57899999999999877888999999999999999999877788999999999999999999777788999999999999
Q ss_pred ccccCCCCCcccccCCCCCccC
Q 030146 161 NDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~L 182 (182)
++|.+++..+..++++++|++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L 129 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKEL 129 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEE
T ss_pred cccccccCCCccccccccccEE
Confidence 9999995544468888888764
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.33 E-value=4e-13 Score=104.18 Aligned_cols=85 Identities=22% Similarity=0.212 Sum_probs=43.1
Q ss_pred CEEEEEcCCCCCCccccccc--cCCCCCCeeeccccccCCCCCcccCCC-----CCCCEEEccCCcCCccCcccccCCCC
Q 030146 82 RVTRLDLGNSNLSGRLVPEL--GKLEHLQYLELYKNNIQGTIPVELGNL-----KSLISLDLYNNNISGKIPPSLAKLKS 154 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~p~~~~~l-----~~L~~L~ls~n~l~~~~p~~~~~l~~ 154 (182)
++++|++++|.+++.+|..+ ..+++|+.|++++|.+++. |..+..+ ++|++|++++|++.+..|..++++++
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 45555555555555444443 4555555555555555543 4433333 45555555555555444444555555
Q ss_pred CceEecccccCCC
Q 030146 155 LVFLRLNDNRLTG 167 (182)
Q Consensus 155 L~~L~L~~N~l~g 167 (182)
|++|++++|++.|
T Consensus 175 L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 175 LSTLDLSDNPELG 187 (312)
T ss_dssp CCEEECCSCTTCH
T ss_pred CCEEECCCCCcCc
Confidence 5555555555443
No 83
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=4e-12 Score=90.63 Aligned_cols=97 Identities=24% Similarity=0.237 Sum_probs=80.8
Q ss_pred CCEEEEEcCCCCCCccccccccCCC-CCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLE-HLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
.+++.|++++|.+.. ++. +..+. +|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 19 ~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 468999999999994 444 55544 999999999999965 5789999999999999999965445558999999999
Q ss_pred cccccCCCCCcc--cccCCCCCccC
Q 030146 160 LNDNRLTGQIPR--ELVGISSLKVV 182 (182)
Q Consensus 160 L~~N~l~g~~p~--~~~~l~~L~~L 182 (182)
+++|.++ .+|. .+..+++|++|
T Consensus 95 L~~N~i~-~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLASLKSLTYL 118 (176)
T ss_dssp CCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred CCCCcCC-cchhhHhhhcCCCCCEE
Confidence 9999996 6776 78888888754
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=2.8e-12 Score=105.36 Aligned_cols=108 Identities=22% Similarity=0.303 Sum_probs=57.7
Q ss_pred ccceeeCCCCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCccc-----------------------CCC
Q 030146 72 WFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL-----------------------GNL 128 (182)
Q Consensus 72 w~~v~c~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-----------------------~~l 128 (182)
+.++.+....+++.|++++|.+++..|..+..+++|+.|++++|.+++..|..+ ..+
T Consensus 111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l 190 (487)
T 3oja_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF 190 (487)
T ss_dssp CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCC
T ss_pred CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccC
Confidence 333344333445555555555554444444444555555555555444333333 235
Q ss_pred CCCCEEEccCCcCCccCcccccCCCCCceEecccccCCCCCcccccCCCCCcc
Q 030146 129 KSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 129 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~ 181 (182)
++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.
T Consensus 191 ~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~ 241 (487)
T 3oja_A 191 AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241 (487)
T ss_dssp TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCE
T ss_pred CCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCE
Confidence 566666666666664 3334666667777777777766 35666666666654
No 85
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.30 E-value=6e-12 Score=105.37 Aligned_cols=101 Identities=23% Similarity=0.107 Sum_probs=72.0
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+.+..|..|..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+.++++|++|++
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence 46777888888877766777777888888888888877666777777777888888777777544566777777777777
Q ss_pred ccccCCCCCcccccCCCCCcc
Q 030146 161 NDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~ 181 (182)
++|.+++..++.+..+++|++
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~ 157 (606)
T 3t6q_A 137 GSNHISSIKLPKGFPTEKLKV 157 (606)
T ss_dssp CSSCCCCCCCCTTCCCTTCCE
T ss_pred CCCcccccCcccccCCcccCE
Confidence 777777533233334666654
No 86
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.30 E-value=7.6e-12 Score=101.28 Aligned_cols=98 Identities=24% Similarity=0.247 Sum_probs=67.2
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
+++.|++++|.++ .+| .+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..|.++++|+.|+|+
T Consensus 186 ~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 186 NLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263 (440)
T ss_dssp SCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred ccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence 4455555555555 222 35566667777777777776666677777777777777777776666677777888888888
Q ss_pred cccCCCCCcccccCCCCCcc
Q 030146 162 DNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 162 ~N~l~g~~p~~~~~l~~L~~ 181 (182)
+|++++..+..+..+++|+.
T Consensus 264 ~N~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 264 HNNLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp TSCCCCCCTTTTSSCTTCCE
T ss_pred CCCCCccChhHhccccCCCE
Confidence 88887655566677777764
No 87
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.29 E-value=7.6e-12 Score=101.58 Aligned_cols=98 Identities=28% Similarity=0.275 Sum_probs=67.7
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
+++.|++++|.+++. +.+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..|..|.++++|+.|+++
T Consensus 197 ~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 197 NLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274 (452)
T ss_dssp TCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccccc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence 455555666665532 245666677777777777776666677777777777777777776667777777888888888
Q ss_pred cccCCCCCcccccCCCCCcc
Q 030146 162 DNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 162 ~N~l~g~~p~~~~~l~~L~~ 181 (182)
+|++++..+..+..+++|+.
T Consensus 275 ~N~l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 275 HNNLSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp SSCCSCCCTTSSTTCTTCCE
T ss_pred CCcCCccChHHhccccCCCE
Confidence 88887555556667777664
No 88
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.29 E-value=2.8e-12 Score=106.11 Aligned_cols=101 Identities=23% Similarity=0.269 Sum_probs=67.0
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCc-cCcccccCCCCCceEe
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG-KIPPSLAKLKSLVFLR 159 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~ 159 (182)
.++++|++++|.+.+..|..|..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++ ..|..++++++|++|+
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 129 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence 467777777777776666667777777777777777776555557777777777777777764 2455566667777777
Q ss_pred cccccCCCCCc-ccccCCCCCcc
Q 030146 160 LNDNRLTGQIP-RELVGISSLKV 181 (182)
Q Consensus 160 L~~N~l~g~~p-~~~~~l~~L~~ 181 (182)
+++|.+.+.+| ..+.++++|++
T Consensus 130 L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 130 IGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp EEESSSCCEECTTTTTTCCEEEE
T ss_pred CCCCccccccCHhhhhcccccCe
Confidence 77666444444 34555555543
No 89
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=1.3e-12 Score=114.07 Aligned_cols=102 Identities=24% Similarity=0.312 Sum_probs=89.4
Q ss_pred CCCEEEEEcCCCCCCc-----------------ccccccc--CCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCc
Q 030146 80 DNRVTRLDLGNSNLSG-----------------RLVPELG--KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140 (182)
Q Consensus 80 ~~~l~~L~l~~n~l~~-----------------~~~~~~~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~ 140 (182)
..+++.|++++|.+++ .+|..+. .+++|+.|++++|.+.+.+|..+..+++|+.|++++|+
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 4679999999999998 3888877 99999999999999999999999999999999999998
Q ss_pred -CCc-cCcccccCCC-------CCceEecccccCCCCCcc--cccCCCCCccC
Q 030146 141 -ISG-KIPPSLAKLK-------SLVFLRLNDNRLTGQIPR--ELVGISSLKVV 182 (182)
Q Consensus 141 -l~~-~~p~~~~~l~-------~L~~L~L~~N~l~g~~p~--~~~~l~~L~~L 182 (182)
++| .+|..++.++ +|+.|++++|.++ .+|. .++++++|+.|
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L 578 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLL 578 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEE
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEE
Confidence 888 7887766655 8999999999998 8888 88888888754
No 90
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.26 E-value=2.6e-11 Score=94.41 Aligned_cols=92 Identities=26% Similarity=0.313 Sum_probs=70.6
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|++|++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEEC
Confidence 46778888888887766777888888888888888887666667777888888888888887 67777778888888888
Q ss_pred ccccCCCCCcccc
Q 030146 161 NDNRLTGQIPREL 173 (182)
Q Consensus 161 ~~N~l~g~~p~~~ 173 (182)
++|++++..+..|
T Consensus 271 ~~N~i~~~~~~~f 283 (330)
T 1xku_A 271 HNNNISAIGSNDF 283 (330)
T ss_dssp CSSCCCCCCTTSS
T ss_pred CCCcCCccChhhc
Confidence 8888875444444
No 91
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.25 E-value=6.7e-12 Score=98.72 Aligned_cols=100 Identities=20% Similarity=0.242 Sum_probs=61.6
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcc--cccCCCCCceE
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP--SLAKLKSLVFL 158 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~--~~~~l~~L~~L 158 (182)
.+++.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|. .+.++++|++|
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQIL 154 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEE
Confidence 45677777777777655566677777777777777776433333666677777777777666 3443 45666666666
Q ss_pred eccccc-CCCCCcccccCCCCCcc
Q 030146 159 RLNDNR-LTGQIPRELVGISSLKV 181 (182)
Q Consensus 159 ~L~~N~-l~g~~p~~~~~l~~L~~ 181 (182)
++++|+ +.+..|..+.++++|++
T Consensus 155 ~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 155 RVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEE
T ss_pred ECCCCccccccCHHHccCCCCCCE
Confidence 666663 44333445555555543
No 92
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=2.8e-12 Score=110.10 Aligned_cols=92 Identities=29% Similarity=0.466 Sum_probs=84.7
Q ss_pred CCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
..+++.|+|++|.++ .+|..|..+++|+.|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|+.+++|+.|+
T Consensus 246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG 322 (727)
T ss_dssp CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence 357899999999999 88999999999999999999999 78999999999999999999998 8899999999999999
Q ss_pred cccccCCCCCccccc
Q 030146 160 LNDNRLTGQIPRELV 174 (182)
Q Consensus 160 L~~N~l~g~~p~~~~ 174 (182)
|++|++++.+|..+.
T Consensus 323 L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 323 VEGNPLEKQFLKILT 337 (727)
T ss_dssp CTTSCCCSHHHHHHH
T ss_pred CCCCccCCCChHHHh
Confidence 999999988776653
No 93
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.24 E-value=1.7e-11 Score=95.64 Aligned_cols=93 Identities=26% Similarity=0.317 Sum_probs=68.7
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++ .+|..+..+++|++|++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEEC
Confidence 46777778888777666667777888888888888887666666777788888888888877 67777777778888888
Q ss_pred ccccCCCCCccccc
Q 030146 161 NDNRLTGQIPRELV 174 (182)
Q Consensus 161 ~~N~l~g~~p~~~~ 174 (182)
++|++++..+..+.
T Consensus 272 ~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 272 HTNNITKVGVNDFC 285 (332)
T ss_dssp CSSCCCBCCTTSSS
T ss_pred CCCCCCccChhHcc
Confidence 88877744444443
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.23 E-value=8.4e-12 Score=93.00 Aligned_cols=98 Identities=20% Similarity=0.254 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCC-CCccccccccCCCCCCeeeccc-cccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCc--
Q 030146 81 NRVTRLDLGNSN-LSGRLVPELGKLEHLQYLELYK-NNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV-- 156 (182)
Q Consensus 81 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~-- 156 (182)
.+++.|++++|. ++...+..|..+++|+.|++++ |.+++..+..+..+++|++|++++|.+++ +|. +..+++|+
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L 132 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIF 132 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccc
Confidence 457777777775 6654445667777777777776 77775555566677777777777777763 554 56666666
Q ss_pred -eEecccc-cCCCCCcccccCCCCCc
Q 030146 157 -FLRLNDN-RLTGQIPRELVGISSLK 180 (182)
Q Consensus 157 -~L~L~~N-~l~g~~p~~~~~l~~L~ 180 (182)
.|++++| .+++..+..|..+++|+
T Consensus 133 ~~L~l~~N~~l~~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVNAFQGLCNET 158 (239)
T ss_dssp EEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred cEEECCCCcchhhcCcccccchhcce
Confidence 7777776 66544344456666655
No 95
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.23 E-value=2.9e-11 Score=105.32 Aligned_cols=102 Identities=19% Similarity=0.208 Sum_probs=88.6
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+.++++|+.|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 46889999999998887888889999999999999998877888889999999999999998777888899999999999
Q ss_pred ccccCCCCCcccccCCCCCccC
Q 030146 161 NDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~L 182 (182)
++|.+++..+..|..+++|++|
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L 367 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTL 367 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEE
T ss_pred CCCCCCccChhhhcCCCCCCEE
Confidence 9999987666778888888764
No 96
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=2.2e-11 Score=95.46 Aligned_cols=94 Identities=22% Similarity=0.186 Sum_probs=80.5
Q ss_pred EEEcCCC-CCCccccccccCCCCCCeeeccc-cccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEeccc
Q 030146 85 RLDLGNS-NLSGRLVPELGKLEHLQYLELYK-NNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLND 162 (182)
Q Consensus 85 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (182)
.++.+++ +++ .+|. +..+++|+.|+|++ |.+.+..+..+..+++|+.|+|++|++++..|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4688988 888 5777 99999999999996 999987778899999999999999999988888999999999999999
Q ss_pred ccCCCCCcccccCCCCCcc
Q 030146 163 NRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 163 N~l~g~~p~~~~~l~~L~~ 181 (182)
|++++..+..+..++ |+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~ 107 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQE 107 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCE
T ss_pred CccceeCHHHcccCC-ceE
Confidence 999955444454443 654
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.22 E-value=1.2e-11 Score=95.80 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=76.5
Q ss_pred CEEEEEcCCCCCCccccccc--cCCCCCCeeeccccccCCCCC----cccCCCCCCCEEEccCCcCCccCcccccCCCCC
Q 030146 82 RVTRLDLGNSNLSGRLVPEL--GKLEHLQYLELYKNNIQGTIP----VELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~p----~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L 155 (182)
++++|++++|.+.+..|..+ ..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 48889999999888888877 788889999999998886544 234567888889998888887777778888888
Q ss_pred ceEecccccCCCC--Cc--ccccCCCCCccC
Q 030146 156 VFLRLNDNRLTGQ--IP--RELVGISSLKVV 182 (182)
Q Consensus 156 ~~L~L~~N~l~g~--~p--~~~~~l~~L~~L 182 (182)
++|++++|++.+. ++ ..+..+++|++|
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L 202 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNL 202 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEE
Confidence 8888888887642 22 223456666654
No 98
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.22 E-value=1.4e-11 Score=101.40 Aligned_cols=100 Identities=25% Similarity=0.363 Sum_probs=54.4
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCC--CCCcccCCCCCCCEEEccCCcCCccCccc-ccCC-----
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG--TIPVELGNLKSLISLDLYNNNISGKIPPS-LAKL----- 152 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~ls~n~l~~~~p~~-~~~l----- 152 (182)
.+++.|++++|.+.+..|..+..+++|+.|++++|.+.+ .+|..+..+++|++|++++|.+.+.+|.. +..+
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 345566666666665555555555566666666665554 23344555555555555555555433332 3333
Q ss_pred -----------------CCCceEecccccCCCCCcccccCCCCCcc
Q 030146 153 -----------------KSLVFLRLNDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 153 -----------------~~L~~L~L~~N~l~g~~p~~~~~l~~L~~ 181 (182)
++|+.|++++|+++ .+|..+..+++|++
T Consensus 404 L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~ 448 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQE 448 (520)
T ss_dssp EECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCE
T ss_pred EECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCE
Confidence 45556666666655 55655556666654
No 99
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.21 E-value=2.2e-12 Score=99.98 Aligned_cols=99 Identities=21% Similarity=0.227 Sum_probs=82.2
Q ss_pred EEEEEcCCCCCC-cccccccc-------CCCCCCeeeccccccCCCCCccc--CCCCCCCEEEccCCcCCccCcccccCC
Q 030146 83 VTRLDLGNSNLS-GRLVPELG-------KLEHLQYLELYKNNIQGTIPVEL--GNLKSLISLDLYNNNISGKIPPSLAKL 152 (182)
Q Consensus 83 l~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~p~~~--~~l~~L~~L~ls~n~l~~~~p~~~~~l 152 (182)
++.+++++|.+. ..+|..+. .+++|+.|++++|.+++.+|..+ ..+++|++|++++|++++. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 445566666663 34454444 68999999999999998888876 8999999999999999976 8878777
Q ss_pred -----CCCceEecccccCCCCCcccccCCCCCccC
Q 030146 153 -----KSLVFLRLNDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 153 -----~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L 182 (182)
++|++|++++|++++..|..++++++|++|
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 178 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL 178 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEE
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEE
Confidence 899999999999998887899999998864
No 100
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.20 E-value=2.9e-11 Score=93.89 Aligned_cols=98 Identities=24% Similarity=0.292 Sum_probs=65.3
Q ss_pred CCEEEEEcCCCCCCcccccccc-CCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 81 NRVTRLDLGNSNLSGRLVPELG-KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
.+++.|++++|.+.+..+..+. .+++|+.|++++|.+++. + ....+++|++|++++|++++ +|..+..+++|+.|+
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~ 220 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS 220 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEE
T ss_pred CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEE
Confidence 3566666666666655444442 466667777777766643 2 23346777888888888874 455577788888888
Q ss_pred cccccCCCCCcccccCCCCCccC
Q 030146 160 LNDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 160 L~~N~l~g~~p~~~~~l~~L~~L 182 (182)
+++|+++ .+|..+..+++|++|
T Consensus 221 L~~N~l~-~l~~~~~~l~~L~~L 242 (317)
T 3o53_A 221 LRNNKLV-LIEKALRFSQNLEHF 242 (317)
T ss_dssp CTTSCCC-EECTTCCCCTTCCEE
T ss_pred CcCCccc-chhhHhhcCCCCCEE
Confidence 8888887 567777777777653
No 101
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.20 E-value=2.4e-11 Score=94.30 Aligned_cols=104 Identities=22% Similarity=0.252 Sum_probs=79.4
Q ss_pred eeCCCCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCccc-CCCCCCCEEEccCCcCCccCcccccCCCC
Q 030146 76 TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNNNISGKIPPSLAKLKS 154 (182)
Q Consensus 76 ~c~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ls~n~l~~~~p~~~~~l~~ 154 (182)
......+++.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|.+++. |. ...+++
T Consensus 115 ~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~ 192 (317)
T 3o53_A 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAK 192 (317)
T ss_dssp EECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTT
T ss_pred CccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-cccccc
Confidence 33344567888888888887667778888889999999999887666655 3678899999999998844 33 335889
Q ss_pred CceEecccccCCCCCcccccCCCCCccC
Q 030146 155 LVFLRLNDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 155 L~~L~L~~N~l~g~~p~~~~~l~~L~~L 182 (182)
|++|++++|.++ .+|+.+..+++|++|
T Consensus 193 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L 219 (317)
T 3o53_A 193 LKTLDLSSNKLA-FMGPEFQSAAGVTWI 219 (317)
T ss_dssp CCEEECCSSCCC-EECGGGGGGTTCSEE
T ss_pred CCEEECCCCcCC-cchhhhcccCcccEE
Confidence 999999999998 456668888888754
No 102
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.19 E-value=3.1e-11 Score=99.18 Aligned_cols=95 Identities=17% Similarity=0.178 Sum_probs=71.8
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
+++.|++++|.+++. +....+++|+.|++++|.+++ +|+.+..+++|+.|++++|.+++ +|..+..+++|+.++++
T Consensus 170 ~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 170 TLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLR 245 (487)
T ss_dssp TCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECT
T ss_pred cccEEecCCCccccc--cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcC
Confidence 445555555555433 122347788888888888885 45568899999999999999994 78889999999999999
Q ss_pred cccCC-CCCcccccCCCCCc
Q 030146 162 DNRLT-GQIPRELVGISSLK 180 (182)
Q Consensus 162 ~N~l~-g~~p~~~~~l~~L~ 180 (182)
+|++. +.+|..+..+++|+
T Consensus 246 ~N~l~c~~~~~~~~~l~~L~ 265 (487)
T 3oja_A 246 GNGFHCGTLRDFFSKNQRVQ 265 (487)
T ss_dssp TCCBCHHHHHHHHTTCHHHH
T ss_pred CCCCcCcchHHHHHhCCCCc
Confidence 99998 67777777766554
No 103
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.19 E-value=3.3e-11 Score=100.31 Aligned_cols=100 Identities=22% Similarity=0.332 Sum_probs=57.0
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCC--CCcccCCCCCCCEEEccCCcCCccCccc-ccCC-----
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGT--IPVELGNLKSLISLDLYNNNISGKIPPS-LAKL----- 152 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~ls~n~l~~~~p~~-~~~l----- 152 (182)
.+++.+++++|.+.+..|..+..+++|+.|++++|.+++. +|..+..+++|++|++++|.+++.+|.. +..+
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 4566666666666655555666666666666666666542 2234555566666666666655434332 3333
Q ss_pred -----------------CCCceEecccccCCCCCcccccCCCCCcc
Q 030146 153 -----------------KSLVFLRLNDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 153 -----------------~~L~~L~L~~N~l~g~~p~~~~~l~~L~~ 181 (182)
++|+.|++++|+++ .+|..+..+++|++
T Consensus 433 L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~ 477 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQE 477 (562)
T ss_dssp EECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSE
T ss_pred EECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCE
Confidence 45666666666665 56665666666654
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.15 E-value=1.7e-11 Score=94.84 Aligned_cols=95 Identities=15% Similarity=0.111 Sum_probs=57.7
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCC--C--CcccCCCCCCCEEEccCCcCCccCcc----cccCC
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGT--I--PVELGNLKSLISLDLYNNNISGKIPP----SLAKL 152 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--p~~~~~l~~L~~L~ls~n~l~~~~p~----~~~~l 152 (182)
.+++.|++++|.+.+..+..+..+++|+.|++++|.+.+. + +..+..+++|++|++++|+++ .++. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence 4677788888888766667777778888888888776531 1 112245556666666666665 2222 13455
Q ss_pred CCCceEecccccCCCCCcccccCC
Q 030146 153 KSLVFLRLNDNRLTGQIPRELVGI 176 (182)
Q Consensus 153 ~~L~~L~L~~N~l~g~~p~~~~~l 176 (182)
++|++|++++|.+++..|+.+..+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCEEECCCCCCCccchhhHHhc
Confidence 666666666666665555555444
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.14 E-value=6.8e-11 Score=93.01 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=86.4
Q ss_pred CCCcccceeeCC----------CCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCc-ccCCCCCCCE-EE
Q 030146 68 NPCTWFHITCNQ----------DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV-ELGNLKSLIS-LD 135 (182)
Q Consensus 68 ~~c~w~~v~c~~----------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~-L~ 135 (182)
..|.+..|.|.. ..++++|++++|.++...+..|..+++|+.|++++|.+.+.+|. .+..+++++. +.
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 447788888853 14689999999999965556789999999999999998766654 5778888775 56
Q ss_pred ccCCcCCccCcccccCCCCCceEecccccCCCCCcccccCCCC
Q 030146 136 LYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISS 178 (182)
Q Consensus 136 ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~ 178 (182)
+..|+++...|+.|.++++|++|++++|.+++..+..+....+
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 129 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSS
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccch
Confidence 6779999777788999999999999999998554444433333
No 106
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.13 E-value=1e-10 Score=91.43 Aligned_cols=94 Identities=29% Similarity=0.382 Sum_probs=54.0
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
+++.+++++|.+.+. +.+..+++|+.|++++|.+.+. +.+..+++|+.|++++|.+++..|..+..+++|+.|+++
T Consensus 244 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 244 QLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred CCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence 455555555555432 3355555666666666655532 235556666666666666665555566666667777777
Q ss_pred cccCCCCCcccccCCCCCcc
Q 030146 162 DNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 162 ~N~l~g~~p~~~~~l~~L~~ 181 (182)
+|++++..| +..+++|++
T Consensus 320 ~n~l~~~~~--~~~l~~L~~ 337 (347)
T 4fmz_A 320 QNHITDIRP--LASLSKMDS 337 (347)
T ss_dssp SSSCCCCGG--GGGCTTCSE
T ss_pred CCccccccC--hhhhhccce
Confidence 766664433 555555554
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.13 E-value=1.7e-10 Score=88.60 Aligned_cols=92 Identities=32% Similarity=0.393 Sum_probs=50.2
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+.+ + +.+..+++|+.|++++|.+.+. +.+..+++|+.|++++|++++. ..+..+++|+.|++
T Consensus 90 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 90 KNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL 163 (291)
T ss_dssp TTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred CCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEc
Confidence 456667777776664 2 2356666666666666666542 2355555566666666555532 34455555555555
Q ss_pred ccccCCCCCcccccCCCCCc
Q 030146 161 NDNRLTGQIPRELVGISSLK 180 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~ 180 (182)
++|.+++. +. +..+++|+
T Consensus 164 ~~N~l~~~-~~-l~~l~~L~ 181 (291)
T 1h6t_A 164 EDNQISDI-VP-LAGLTKLQ 181 (291)
T ss_dssp CSSCCCCC-GG-GTTCTTCC
T ss_pred cCCccccc-hh-hcCCCccC
Confidence 55555532 22 44444444
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.11 E-value=2.7e-10 Score=87.52 Aligned_cols=91 Identities=34% Similarity=0.444 Sum_probs=42.9
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
+++.|++++|.+++..+ +..+++|+.|++++|.+.+ +| .+..+++|++|++++|++++ + +.+..+++|+.|+++
T Consensus 69 ~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~ 142 (291)
T 1h6t_A 69 NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLG 142 (291)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECC
T ss_pred CCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEcc
Confidence 44555555555543222 4455555555555555543 22 24455555555555555542 2 234445555555555
Q ss_pred cccCCCCCcccccCCCCCc
Q 030146 162 DNRLTGQIPRELVGISSLK 180 (182)
Q Consensus 162 ~N~l~g~~p~~~~~l~~L~ 180 (182)
+|.+++. +.+..+++|+
T Consensus 143 ~n~l~~~--~~l~~l~~L~ 159 (291)
T 1h6t_A 143 NNKITDI--TVLSRLTKLD 159 (291)
T ss_dssp SSCCCCC--GGGGGCTTCS
T ss_pred CCcCCcc--hhhccCCCCC
Confidence 5555422 3344444444
No 109
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.11 E-value=3e-10 Score=87.87 Aligned_cols=93 Identities=27% Similarity=0.470 Sum_probs=51.7
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+++. +.+..+++|+.|++++|.+.+ ++ .+..+++|++|++++|.+++ ++. +..+++|+.|++
T Consensus 85 ~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l 158 (308)
T 1h6u_A 85 TKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSI 158 (308)
T ss_dssp CSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEEC
T ss_pred CCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEc
Confidence 3455555555555532 245555666666666666553 22 25566666666666666653 222 556666666666
Q ss_pred ccccCCCCCcccccCCCCCcc
Q 030146 161 NDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~ 181 (182)
++|.+++ ++. +..+++|++
T Consensus 159 ~~n~l~~-~~~-l~~l~~L~~ 177 (308)
T 1h6u_A 159 GNAQVSD-LTP-LANLSKLTT 177 (308)
T ss_dssp CSSCCCC-CGG-GTTCTTCCE
T ss_pred cCCcCCC-Chh-hcCCCCCCE
Confidence 6666663 333 556666554
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.10 E-value=3.8e-10 Score=85.48 Aligned_cols=79 Identities=27% Similarity=0.383 Sum_probs=42.3
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+++..+ +..+++|+.|++++|.+++ +|. +.. ++|+.|++++|++++ ++ .+..+++|+.|++
T Consensus 63 ~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~L 135 (263)
T 1xeu_A 63 TNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSI 135 (263)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEEC
Confidence 456777777777764332 6666777777777776664 222 112 445555555555542 22 2444445555555
Q ss_pred ccccCC
Q 030146 161 NDNRLT 166 (182)
Q Consensus 161 ~~N~l~ 166 (182)
++|+++
T Consensus 136 s~N~i~ 141 (263)
T 1xeu_A 136 RNNKLK 141 (263)
T ss_dssp TTSCCC
T ss_pred CCCcCC
Confidence 555444
No 111
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.09 E-value=2.6e-10 Score=88.28 Aligned_cols=80 Identities=33% Similarity=0.496 Sum_probs=43.3
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+++. + .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++ ++. +..+++|+.|++
T Consensus 107 ~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 107 QSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKA 180 (308)
T ss_dssp TTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEEC
Confidence 4566677777766642 2 25566666666666666653322 4555555555555555552 222 444555555555
Q ss_pred ccccCC
Q 030146 161 NDNRLT 166 (182)
Q Consensus 161 ~~N~l~ 166 (182)
++|.++
T Consensus 181 ~~n~l~ 186 (308)
T 1h6u_A 181 DDNKIS 186 (308)
T ss_dssp CSSCCC
T ss_pred CCCccC
Confidence 555554
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.07 E-value=5e-10 Score=84.83 Aligned_cols=93 Identities=25% Similarity=0.359 Sum_probs=77.7
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.++. ++ .+..+++|+.|++++|.+++..+ +..+++|++|++++|++++ +|... . ++|+.|++
T Consensus 41 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEEC
T ss_pred CcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEc
Confidence 568999999999984 44 68899999999999999996544 8999999999999999995 55433 3 89999999
Q ss_pred ccccCCCCCcccccCCCCCccC
Q 030146 161 NDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~L 182 (182)
++|.+++ ++ .+..+++|++|
T Consensus 114 ~~N~l~~-~~-~l~~l~~L~~L 133 (263)
T 1xeu_A 114 DNNELRD-TD-SLIHLKNLEIL 133 (263)
T ss_dssp CSSCCSB-SG-GGTTCTTCCEE
T ss_pred cCCccCC-Ch-hhcCcccccEE
Confidence 9999984 44 58888888754
No 113
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.07 E-value=3.1e-10 Score=88.65 Aligned_cols=96 Identities=29% Similarity=0.423 Sum_probs=76.1
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+.+..+ +..+++|+.|++++|.+++. +.+..+++|++|++++|.+++ + +.+..+++|+.|++
T Consensus 221 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 221 TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFL 294 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEEC
T ss_pred CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEEC
Confidence 467888888888875433 77888888888888888753 457788889999999998884 3 45778889999999
Q ss_pred ccccCCCCCcccccCCCCCccC
Q 030146 161 NDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~L 182 (182)
++|++++..|..+..+++|++|
T Consensus 295 ~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 295 NNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp CSSCCCGGGHHHHHTCTTCSEE
T ss_pred cCCcCCCcChhHhhccccCCEE
Confidence 9999887778888888888754
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.04 E-value=6e-10 Score=93.85 Aligned_cols=79 Identities=34% Similarity=0.409 Sum_probs=35.0
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
+++.|++++|.+.+ + +.+..+++|+.|++++|.+.+ + +.+..+++|+.|++++|.+++. ..+..+++|+.|+|+
T Consensus 88 ~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 88 NLGWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE 161 (605)
T ss_dssp TCCEEECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECC
T ss_pred CCCEEECcCCCCCC-C-hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECc
Confidence 45555555555543 1 234445555555555555443 1 2234444444444444444421 233344444444444
Q ss_pred cccCC
Q 030146 162 DNRLT 166 (182)
Q Consensus 162 ~N~l~ 166 (182)
+|.++
T Consensus 162 ~N~l~ 166 (605)
T 1m9s_A 162 DNQIS 166 (605)
T ss_dssp SSCCC
T ss_pred CCcCC
Confidence 44444
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.03 E-value=1.7e-10 Score=96.45 Aligned_cols=84 Identities=32% Similarity=0.444 Sum_probs=38.7
Q ss_pred cccce-eeCCCCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccc
Q 030146 71 TWFHI-TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSL 149 (182)
Q Consensus 71 ~w~~v-~c~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~ 149 (182)
.|.++ .|. .++++.|++++|++++ +|..+. ++|+.|++++|.++ .+| ..+++|++|++++|.+++ +|. +
T Consensus 49 ~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l 118 (571)
T 3cvr_A 49 AVSLLKECL-INQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-L 118 (571)
T ss_dssp HHHHHHHHH-HTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-C
T ss_pred hhhhccccc-cCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-h
Confidence 46666 343 2345556666665554 444332 44555555555554 333 223444455555444443 333 2
Q ss_pred cCCCCCceEecccccCC
Q 030146 150 AKLKSLVFLRLNDNRLT 166 (182)
Q Consensus 150 ~~l~~L~~L~L~~N~l~ 166 (182)
.+ +|+.|++++|+++
T Consensus 119 ~~--~L~~L~Ls~N~l~ 133 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQLT 133 (571)
T ss_dssp CT--TCCEEECCSSCCS
T ss_pred hc--CCCEEECCCCcCC
Confidence 22 3444444444443
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.03 E-value=8e-10 Score=93.09 Aligned_cols=93 Identities=32% Similarity=0.439 Sum_probs=50.2
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+.+. +.+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..| +..+++|+.|+|
T Consensus 109 ~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 182 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 182 (605)
T ss_dssp TTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEEC
Confidence 3455566666655532 3355556666666666665543 345555666666666666654333 555566666666
Q ss_pred ccccCCCCCcccccCCCCCcc
Q 030146 161 NDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~ 181 (182)
++|++++ +| .+..+++|+.
T Consensus 183 s~N~i~~-l~-~l~~l~~L~~ 201 (605)
T 1m9s_A 183 SKNHISD-LR-ALAGLKNLDV 201 (605)
T ss_dssp CSSCCCB-CG-GGTTCTTCSE
T ss_pred cCCCCCC-Ch-HHccCCCCCE
Confidence 6665553 22 3555555543
No 117
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.03 E-value=6.1e-10 Score=90.67 Aligned_cols=92 Identities=32% Similarity=0.528 Sum_probs=45.1
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
+++.|++++|.+.+..+ +..+++|+.|++++|.+.+..| +..+++|+.|++++|.+++. ..+..+++|+.|+++
T Consensus 288 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 288 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAG 361 (466)
T ss_dssp TCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred ccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCC
Confidence 34444444444443221 4444555555555555544332 34455555555555555532 235555666666666
Q ss_pred cccCCCCCcccccCCCCCcc
Q 030146 162 DNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 162 ~N~l~g~~p~~~~~l~~L~~ 181 (182)
+|++++..| +..+++|++
T Consensus 362 ~n~l~~~~~--~~~l~~L~~ 379 (466)
T 1o6v_A 362 HNQISDLTP--LANLTRITQ 379 (466)
T ss_dssp SSCCCBCGG--GTTCTTCCE
T ss_pred CCccCccch--hhcCCCCCE
Confidence 666654443 555555543
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.00 E-value=3.9e-12 Score=92.34 Aligned_cols=97 Identities=24% Similarity=0.316 Sum_probs=74.2
Q ss_pred CCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEe
Q 030146 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
..+++.|++++|.+++ +| .+..+++|+.|++++|.+. .+|..+..+++|++|++++|++++ +| .+..+++|+.|+
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY 121 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence 3568899999998885 55 7888889999999999988 567666667888888888888884 44 577778888888
Q ss_pred cccccCCCCCc--ccccCCCCCccC
Q 030146 160 LNDNRLTGQIP--RELVGISSLKVV 182 (182)
Q Consensus 160 L~~N~l~g~~p--~~~~~l~~L~~L 182 (182)
+++|+++ .+| ..+..+++|++|
T Consensus 122 l~~N~i~-~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 122 MSNNKIT-NWGEIDKLAALDKLEDL 145 (198)
T ss_dssp ESEEECC-CHHHHHHHTTTTTCSEE
T ss_pred CCCCcCC-chhHHHHHhcCCCCCEE
Confidence 8888887 333 356777777653
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.00 E-value=1.1e-09 Score=89.20 Aligned_cols=79 Identities=34% Similarity=0.514 Sum_probs=32.8
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
+++.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++.+. +. +..+++|+.|+++
T Consensus 244 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLY 317 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECC
T ss_pred CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECc
Confidence 34444444444443221 3444444444444444443211 34444444444444444422 11 3344444444444
Q ss_pred cccCC
Q 030146 162 DNRLT 166 (182)
Q Consensus 162 ~N~l~ 166 (182)
+|+++
T Consensus 318 ~n~l~ 322 (466)
T 1o6v_A 318 FNNIS 322 (466)
T ss_dssp SSCCS
T ss_pred CCcCC
Confidence 44444
No 120
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.99 E-value=1.6e-09 Score=88.28 Aligned_cols=89 Identities=21% Similarity=0.264 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+++. | +..+++|+.|++++|.+++. + +..+++|++|++++|++++ +| ++.+++|++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence 4677788888877753 2 67777888888888887753 3 6777788888888888774 44 677788888888
Q ss_pred ccccCCCCCcccccCCCCCcc
Q 030146 161 NDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 161 ~~N~l~g~~p~~~~~l~~L~~ 181 (182)
++|++++ ++ ++.+++|++
T Consensus 135 ~~N~l~~-l~--l~~l~~L~~ 152 (457)
T 3bz5_A 135 ARNTLTE-ID--VSHNTQLTE 152 (457)
T ss_dssp TTSCCSC-CC--CTTCTTCCE
T ss_pred CCCccce-ec--cccCCcCCE
Confidence 8888875 33 566666654
No 121
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.99 E-value=5.9e-11 Score=92.33 Aligned_cols=100 Identities=24% Similarity=0.240 Sum_probs=51.4
Q ss_pred CEEEEEcCCCCCCcc-ccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCC-cCCcc-CcccccCCCCCceE
Q 030146 82 RVTRLDLGNSNLSGR-LVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN-NISGK-IPPSLAKLKSLVFL 158 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n-~l~~~-~p~~~~~l~~L~~L 158 (182)
+++.|++++|.+.+. ++..+..+++|+.|++++|.+++..+..+..+++|++|++++| .+++. ++..+.++++|++|
T Consensus 94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 455555555555433 4444555555555555555555444445555555555555555 34431 34444555555556
Q ss_pred ecccc-cCCCC-CcccccCCC-CCcc
Q 030146 159 RLNDN-RLTGQ-IPRELVGIS-SLKV 181 (182)
Q Consensus 159 ~L~~N-~l~g~-~p~~~~~l~-~L~~ 181 (182)
++++| .+++. ++..+..++ +|++
T Consensus 174 ~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 174 NLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp ECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred cCCCCCCcChHHHHHHHHhcccCCCE
Confidence 55555 55432 344444455 4443
No 122
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.98 E-value=1.7e-11 Score=95.42 Aligned_cols=82 Identities=22% Similarity=0.260 Sum_probs=37.8
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeecccc-ccCCC-CCcccCCCCCCCEEEccCC-cCCcc-CcccccCCC-CCc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKN-NIQGT-IPVELGNLKSLISLDLYNN-NISGK-IPPSLAKLK-SLV 156 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~L~ls~n-~l~~~-~p~~~~~l~-~L~ 156 (182)
+++.|++++|.+.+..+..+..+++|+.|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|+
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 4445555555444444444444555555555554 33321 2333444445555555555 44432 233344444 555
Q ss_pred eEecccc
Q 030146 157 FLRLNDN 163 (182)
Q Consensus 157 ~L~L~~N 163 (182)
+|++++|
T Consensus 199 ~L~l~~~ 205 (336)
T 2ast_B 199 QLNLSGY 205 (336)
T ss_dssp EEECCSC
T ss_pred EEEeCCC
Confidence 5555554
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.97 E-value=2.6e-12 Score=93.28 Aligned_cols=93 Identities=26% Similarity=0.307 Sum_probs=74.0
Q ss_pred EEEEcCCCCCCcccc------ccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCce
Q 030146 84 TRLDLGNSNLSGRLV------PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (182)
Q Consensus 84 ~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~ 157 (182)
+.++++++.+.+..| ..+..+++|+.|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|+.
T Consensus 21 ~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~ 97 (198)
T 1ds9_A 21 VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEE 97 (198)
T ss_dssp CCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSE
T ss_pred cCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCE
Confidence 334444444444444 488899999999999999996 66 7889999999999999999 78888888899999
Q ss_pred EecccccCCCCCcccccCCCCCcc
Q 030146 158 LRLNDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 158 L~L~~N~l~g~~p~~~~~l~~L~~ 181 (182)
|++++|.+++ +| .+..+++|++
T Consensus 98 L~L~~N~l~~-l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 98 LWISYNQIAS-LS-GIEKLVNLRV 119 (198)
T ss_dssp EEEEEEECCC-HH-HHHHHHHSSE
T ss_pred EECcCCcCCc-CC-ccccCCCCCE
Confidence 9999999985 55 5666666654
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.96 E-value=1.7e-09 Score=90.44 Aligned_cols=48 Identities=27% Similarity=0.539 Sum_probs=24.5
Q ss_pred CCCCEEEccCCcCCccCcccccCCCCC-------ceEecccccCCCCCcccccCCCCCcc
Q 030146 129 KSLISLDLYNNNISGKIPPSLAKLKSL-------VFLRLNDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 129 ~~L~~L~ls~n~l~~~~p~~~~~l~~L-------~~L~L~~N~l~g~~p~~~~~l~~L~~ 181 (182)
++|+.|++++|+++ .+|. +.. +| +.|++++|+++ .+|..+..+++|++
T Consensus 180 ~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~ 234 (571)
T 3cvr_A 180 ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCT 234 (571)
T ss_dssp TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEE
T ss_pred CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCE
Confidence 44555555555554 3444 322 44 66666666665 55666665666654
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.91 E-value=5.2e-09 Score=85.26 Aligned_cols=80 Identities=25% Similarity=0.282 Sum_probs=54.1
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.+++++|.+++ +| +..+++|+.|++++|.+++. .+..+++|+.|++++|++++ +| +..+++|+.|++
T Consensus 170 ~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l 240 (457)
T 3bz5_A 170 TQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDC 240 (457)
T ss_dssp TTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEEC
T ss_pred CcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEe
Confidence 457777777777775 33 66677777777777777653 36667777777777777774 44 666677777777
Q ss_pred ccccCCCCC
Q 030146 161 NDNRLTGQI 169 (182)
Q Consensus 161 ~~N~l~g~~ 169 (182)
++|++++..
T Consensus 241 ~~N~l~~~~ 249 (457)
T 3bz5_A 241 SVNPLTELD 249 (457)
T ss_dssp CSSCCSCCC
T ss_pred eCCcCCCcC
Confidence 777776543
No 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.85 E-value=1.5e-10 Score=92.06 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=39.9
Q ss_pred CEEEEEcCCCCCCc-----cccccccCCCCCCeeeccccccC----CCCCcccCCCCCCCEEEccCCcCCcc----Cccc
Q 030146 82 RVTRLDLGNSNLSG-----RLVPELGKLEHLQYLELYKNNIQ----GTIPVELGNLKSLISLDLYNNNISGK----IPPS 148 (182)
Q Consensus 82 ~l~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~p~~~~~l~~L~~L~ls~n~l~~~----~p~~ 148 (182)
+++.|++++|.+.. ..+..+..+++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. +|..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 34455555554441 12223444555555555555543 23344444555555555555555432 2333
Q ss_pred c--cCCCCCceEecccccCCC
Q 030146 149 L--AKLKSLVFLRLNDNRLTG 167 (182)
Q Consensus 149 ~--~~l~~L~~L~L~~N~l~g 167 (182)
+ +.+++|+.|++++|.+++
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBH
T ss_pred HhhccCCCeEEEECcCCcCCH
Confidence 3 224555555555555553
No 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.85 E-value=1.2e-08 Score=82.97 Aligned_cols=77 Identities=25% Similarity=0.338 Sum_probs=44.2
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
+++.+++++|.+++ +| .+..+++|+.|++++|.+++ +|..+ .+|++|++++|.+++ +| .++++++|+.|+++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 56666666666664 44 46666677777777766663 34322 355566666665553 44 35555555555555
Q ss_pred cccCC
Q 030146 162 DNRLT 166 (182)
Q Consensus 162 ~N~l~ 166 (182)
+|.++
T Consensus 204 ~N~l~ 208 (454)
T 1jl5_A 204 NNSLK 208 (454)
T ss_dssp SSCCS
T ss_pred CCcCC
Confidence 55554
No 128
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.82 E-value=4.3e-10 Score=88.80 Aligned_cols=87 Identities=26% Similarity=0.261 Sum_probs=59.5
Q ss_pred CEEEEEcCCCCCCccccccccCC-----CCCCeeeccccccCCCCCcc----cCCC-CCCCEEEccCCcCCccCccccc-
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKL-----EHLQYLELYKNNIQGTIPVE----LGNL-KSLISLDLYNNNISGKIPPSLA- 150 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~p~~----~~~l-~~L~~L~ls~n~l~~~~p~~~~- 150 (182)
+++.|++++|.+++..+..+..+ ++|+.|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 67888888888776655555554 77888888888877655443 3333 6788888888888765544432
Q ss_pred ---C-CCCCceEecccccCCCC
Q 030146 151 ---K-LKSLVFLRLNDNRLTGQ 168 (182)
Q Consensus 151 ---~-l~~L~~L~L~~N~l~g~ 168 (182)
. .++|++|++++|.++..
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~ 153 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIK 153 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCceeEEEccCCcCCHH
Confidence 3 25788888888887743
No 129
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.81 E-value=7.1e-09 Score=81.46 Aligned_cols=101 Identities=13% Similarity=0.164 Sum_probs=80.3
Q ss_pred eeeCCCCCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcc-cccCCC
Q 030146 75 ITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP-SLAKLK 153 (182)
Q Consensus 75 v~c~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~l~ 153 (182)
..|.. +.++-++++++ .+|..+ .++++.|++++|.++...+..|..+++|++|++++|++.+.+|. .|.+++
T Consensus 7 C~C~~----~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~ 79 (350)
T 4ay9_X 7 CHCSN----RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79 (350)
T ss_dssp SEEET----TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCT
T ss_pred cEeeC----CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcch
Confidence 45643 35778889988 677766 36899999999999955555789999999999999998766654 578888
Q ss_pred CCce-EecccccCCCCCcccccCCCCCccC
Q 030146 154 SLVF-LRLNDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 154 ~L~~-L~L~~N~l~g~~p~~~~~l~~L~~L 182 (182)
+++. +.++.|++++..|..|..+++|++|
T Consensus 80 ~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 80 KLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred hhhhhhcccCCcccccCchhhhhccccccc
Confidence 8765 6677899997777888999999864
No 130
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.80 E-value=4.5e-10 Score=89.23 Aligned_cols=102 Identities=20% Similarity=0.258 Sum_probs=73.7
Q ss_pred CCEEEEEcCCCCCC-cccc---ccccCCCCCCeeeccccccCC-----CCCcccCCCCCCCEEEccCCcCC----ccCcc
Q 030146 81 NRVTRLDLGNSNLS-GRLV---PELGKLEHLQYLELYKNNIQG-----TIPVELGNLKSLISLDLYNNNIS----GKIPP 147 (182)
Q Consensus 81 ~~l~~L~l~~n~l~-~~~~---~~~~~l~~L~~L~l~~n~l~~-----~~p~~~~~l~~L~~L~ls~n~l~----~~~p~ 147 (182)
.+++.|++++|.++ +.++ ..+..+++|+.|++++|.+.. ..|..+..+++|+.|++++|.++ ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 46788888888876 3333 355677888888888888872 23436777888889999988885 46777
Q ss_pred cccCCCCCceEecccccCCCC----Cccccc--CCCCCccC
Q 030146 148 SLAKLKSLVFLRLNDNRLTGQ----IPRELV--GISSLKVV 182 (182)
Q Consensus 148 ~~~~l~~L~~L~L~~N~l~g~----~p~~~~--~l~~L~~L 182 (182)
.+..+++|+.|++++|.+++. +|..+. ++++|++|
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L 279 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 279 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEE
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEE
Confidence 788888899999998888754 455553 36666643
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.80 E-value=6.3e-09 Score=84.70 Aligned_cols=85 Identities=25% Similarity=0.332 Sum_probs=32.5
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCc--cCcccccCC-------
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG--KIPPSLAKL------- 152 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~--~~p~~~~~l------- 152 (182)
+++.+++++|.+.+ +|.. +++|+.|++++|.++ .+|. .+++|++|++++|.+++ .+|..+..+
T Consensus 318 ~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~ 389 (454)
T 1jl5_A 318 SLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLA 389 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---
T ss_pred cCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccc
Confidence 34445555555443 2322 345555555555555 3343 34556666666666665 455555554
Q ss_pred ------CCCceEecccccCCC--CCccccc
Q 030146 153 ------KSLVFLRLNDNRLTG--QIPRELV 174 (182)
Q Consensus 153 ------~~L~~L~L~~N~l~g--~~p~~~~ 174 (182)
++|+.|++++|++++ .+|..+.
T Consensus 390 ~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~ 419 (454)
T 1jl5_A 390 EVPELPQNLKQLHVETNPLREFPDIPESVE 419 (454)
T ss_dssp ------------------------------
T ss_pred ccccccCcCCEEECCCCcCCccccchhhHh
Confidence 556666666666664 5554443
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.79 E-value=3.2e-08 Score=83.57 Aligned_cols=68 Identities=25% Similarity=0.337 Sum_probs=41.0
Q ss_pred CCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecccccCCCCCcccccCCCCCcc
Q 030146 105 EHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 105 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~ 181 (182)
++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|..+.++++|+.
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~ 288 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETT 288 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCE
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCE
Confidence 455666666666653 33 23455666666666666 4444 4456677777777766 66666666666654
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.78 E-value=3.5e-09 Score=89.42 Aligned_cols=85 Identities=25% Similarity=0.375 Sum_probs=72.3
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEec
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRL 160 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 160 (182)
.+++.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+.++++|+.|++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 467888888888885 44 45689999999999999 5665 6788999999999999 88999999999999999
Q ss_pred ccccCCCCCccccc
Q 030146 161 NDNRLTGQIPRELV 174 (182)
Q Consensus 161 ~~N~l~g~~p~~~~ 174 (182)
++|++++..|..+.
T Consensus 292 ~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 292 EGNPLSERTLQALR 305 (622)
T ss_dssp CSCCCCHHHHHHHH
T ss_pred cCCCCCCcCHHHHH
Confidence 99999987776554
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.75 E-value=1.4e-09 Score=85.78 Aligned_cols=93 Identities=26% Similarity=0.255 Sum_probs=76.3
Q ss_pred CCEEEEEcCCCCCCcccc----ccccCCC-CCCeeeccccccCCCCCcccCCC-----CCCCEEEccCCcCCccCcccc-
Q 030146 81 NRVTRLDLGNSNLSGRLV----PELGKLE-HLQYLELYKNNIQGTIPVELGNL-----KSLISLDLYNNNISGKIPPSL- 149 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l-----~~L~~L~ls~n~l~~~~p~~~- 149 (182)
.+++.|++++|.+++..+ ..+..++ +|+.|++++|.+++..+..+..+ ++|++|++++|.+++..+..+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 459999999999997666 6677888 89999999999997766666654 899999999999997766644
Q ss_pred ---cCC-CCCceEecccccCCCCCcccc
Q 030146 150 ---AKL-KSLVFLRLNDNRLTGQIPREL 173 (182)
Q Consensus 150 ---~~l-~~L~~L~L~~N~l~g~~p~~~ 173 (182)
..+ ++|+.|++++|.+++..+..+
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 129 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEF 129 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHH
Confidence 344 899999999999986665544
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.68 E-value=3.3e-08 Score=76.95 Aligned_cols=100 Identities=13% Similarity=0.101 Sum_probs=85.0
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCC-EEEccCCcCCccCcccccCCCCCceEe
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLI-SLDLYNNNISGKIPPSLAKLKSLVFLR 159 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~-~L~ls~n~l~~~~p~~~~~l~~L~~L~ 159 (182)
.+++.+++++|.++......|..+.+|+.+++..| +....+..|..+.+|+ .+++.+ .++...+..|.++++|+.++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 46999999999999666677999999999999998 7655667799999999 999988 67745567899999999999
Q ss_pred cccccCCCCCcccccCCCCCccC
Q 030146 160 LNDNRLTGQIPRELVGISSLKVV 182 (182)
Q Consensus 160 L~~N~l~g~~p~~~~~l~~L~~L 182 (182)
++.|+++..-+..|.++++|+.+
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEE
T ss_pred eCCCccCccchhhhcCCcchhhh
Confidence 99999985556688999999864
No 136
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.67 E-value=9.5e-09 Score=78.07 Aligned_cols=79 Identities=22% Similarity=0.233 Sum_probs=58.9
Q ss_pred cCCCCCCeeeccccccCC--CCCcccCCCCCCCEEEccCCcCCccCcccccCCC--CCceEecccccCCCCCcc------
Q 030146 102 GKLEHLQYLELYKNNIQG--TIPVELGNLKSLISLDLYNNNISGKIPPSLAKLK--SLVFLRLNDNRLTGQIPR------ 171 (182)
Q Consensus 102 ~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~--~L~~L~L~~N~l~g~~p~------ 171 (182)
..+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|++++. +.+..+. +|+.|+|++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 347889999999999987 3445566788999999999999854 3344444 889999999999876662
Q ss_pred -cccCCCCCccC
Q 030146 172 -ELVGISSLKVV 182 (182)
Q Consensus 172 -~~~~l~~L~~L 182 (182)
.+..+|+|+.|
T Consensus 245 ~il~~~P~L~~L 256 (267)
T 3rw6_A 245 AIRERFPKLLRL 256 (267)
T ss_dssp HHHHHCTTCCEE
T ss_pred HHHHHCcccCeE
Confidence 35667777653
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.56 E-value=1.2e-09 Score=88.25 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=7.1
Q ss_pred CCCCCEEEccCCcCC
Q 030146 128 LKSLISLDLYNNNIS 142 (182)
Q Consensus 128 l~~L~~L~ls~n~l~ 142 (182)
+++|++|++++|.++
T Consensus 340 ~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 340 NRFLLELQISNNRLE 354 (461)
T ss_dssp CSSCCEEECCSSBCH
T ss_pred CCCccEEEccCCccc
Confidence 344444444444444
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.52 E-value=3.8e-09 Score=85.40 Aligned_cols=87 Identities=21% Similarity=0.185 Sum_probs=67.3
Q ss_pred CCEEEEEcCCCCCCcc----ccccccCCCCCCeeeccccccCCCCCcccCC-----CCCCCEEEccCCcCCc----cCcc
Q 030146 81 NRVTRLDLGNSNLSGR----LVPELGKLEHLQYLELYKNNIQGTIPVELGN-----LKSLISLDLYNNNISG----KIPP 147 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-----l~~L~~L~ls~n~l~~----~~p~ 147 (182)
.+++.|++++|.+++. ++..+..+++|+.|++++|.+++..+..+.. .++|++|++++|.+++ .+|.
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 392 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence 3677777777777654 3445566789999999999887543333322 6789999999999986 6788
Q ss_pred cccCCCCCceEecccccCCC
Q 030146 148 SLAKLKSLVFLRLNDNRLTG 167 (182)
Q Consensus 148 ~~~~l~~L~~L~L~~N~l~g 167 (182)
.+..+++|++|++++|++++
T Consensus 393 ~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHCCCCCEEECCSSSCCH
T ss_pred HHHhCCCccEEECCCCCCCH
Confidence 88889999999999999874
No 139
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.42 E-value=1.6e-07 Score=71.25 Aligned_cols=78 Identities=23% Similarity=0.273 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCCCCc--cccccccCCCCCCeeeccccccCCCCCcccCCCC--CCCEEEccCCcCCccCcc-------c
Q 030146 80 DNRVTRLDLGNSNLSG--RLVPELGKLEHLQYLELYKNNIQGTIPVELGNLK--SLISLDLYNNNISGKIPP-------S 148 (182)
Q Consensus 80 ~~~l~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~--~L~~L~ls~n~l~~~~p~-------~ 148 (182)
..+++.|+|++|.+.+ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|.+.+.+|+ .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4579999999999997 4456667899999999999999964 2344444 899999999999977763 3
Q ss_pred ccCCCCCceEe
Q 030146 149 LAKLKSLVFLR 159 (182)
Q Consensus 149 ~~~l~~L~~L~ 159 (182)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56789999886
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.32 E-value=3.8e-08 Score=78.21 Aligned_cols=85 Identities=19% Similarity=0.245 Sum_probs=38.4
Q ss_pred CEEEEEcCCCCCCccccccc-----cCCCCCCeeeccccccCCC----CCcccCCCCCCCEEEccCCcCCcc----Cccc
Q 030146 82 RVTRLDLGNSNLSGRLVPEL-----GKLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNISGK----IPPS 148 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~ 148 (182)
+++.|++++|.++......+ ...+.|+.|++++|.++.. ++..+...++|++|++++|.+++. +++.
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 34555555555543222221 1234555555555555321 122233445555555555555431 1233
Q ss_pred ccCCCCCceEecccccCC
Q 030146 149 LAKLKSLVFLRLNDNRLT 166 (182)
Q Consensus 149 ~~~l~~L~~L~L~~N~l~ 166 (182)
+...++|+.|+|++|.++
T Consensus 207 L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp GGGCSCCCEEECCSSCCC
T ss_pred HhcCCCcCeEECCCCCCC
Confidence 344445555555555554
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.12 E-value=3.1e-07 Score=72.89 Aligned_cols=88 Identities=22% Similarity=0.297 Sum_probs=68.7
Q ss_pred CCCEEEEEcCCCCCCcc----ccccccCCCCCCeeeccccccCCC----CCcccCCCCCCCEEEccCCcCCcc----Ccc
Q 030146 80 DNRVTRLDLGNSNLSGR----LVPELGKLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNISGK----IPP 147 (182)
Q Consensus 80 ~~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~ 147 (182)
...++.|++++|.++.. ++..+...++|+.|++++|.++.. ++..+...++|+.|++++|.+++. ++.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 35799999999998752 334456789999999999998742 244566778999999999999853 334
Q ss_pred cccCCCCCceEecccccCCC
Q 030146 148 SLAKLKSLVFLRLNDNRLTG 167 (182)
Q Consensus 148 ~~~~l~~L~~L~L~~N~l~g 167 (182)
.+...++|++|+|++|.++.
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCH
T ss_pred HHHhCCCCCEEeccCCCCCH
Confidence 45567899999999999874
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=9.1e-06 Score=63.03 Aligned_cols=52 Identities=25% Similarity=0.275 Sum_probs=22.6
Q ss_pred CCCCCEEEccCCcCCccCcccccCCCCCceEecccccCCCCCcccccCCCCCc
Q 030146 128 LKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLK 180 (182)
Q Consensus 128 l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~ 180 (182)
+++|+.+++++|+++...+..|.++.+|+.+++..| ++..-+..|.++++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA 276 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc
Confidence 344555555555444222223445555555555444 3322223344444443
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.01 E-value=3.9e-07 Score=65.30 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=36.8
Q ss_pred CEEEEEcCCCCCCcc----ccccccCCCCCCeeeccccccCCC----CCcccCCCCCCCEEEc--cCCcCCcc----Ccc
Q 030146 82 RVTRLDLGNSNLSGR----LVPELGKLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDL--YNNNISGK----IPP 147 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l--s~n~l~~~----~p~ 147 (182)
++++|++++|.+... +...+...+.|+.|++++|.+... +...+...+.|++|++ ++|.+... +.+
T Consensus 66 ~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~ 145 (185)
T 1io0_A 66 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN 145 (185)
T ss_dssp SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH
T ss_pred CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH
Confidence 455555555555421 112222334455555555555421 1223344445555555 44555432 112
Q ss_pred cccCCCCCceEecccccC
Q 030146 148 SLAKLKSLVFLRLNDNRL 165 (182)
Q Consensus 148 ~~~~l~~L~~L~L~~N~l 165 (182)
.+...+.|+.|++++|.+
T Consensus 146 ~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 146 MLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHCSSCCEEECCCSSH
T ss_pred HHHhCCCcCEEeccCCCC
Confidence 223334555555555544
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.97 E-value=9.3e-07 Score=73.51 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=17.1
Q ss_pred CCCCCCeeeccccccCCC----CCcccCCCCCCCEEEccCCcCC
Q 030146 103 KLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNIS 142 (182)
Q Consensus 103 ~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~ 142 (182)
.+++|+.|++++|.+.+. ++..+..+++|+.|++++|.++
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~ 205 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA 205 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCS
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCC
Confidence 344555555555544332 1112223444444444444443
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=2.3e-06 Score=60.83 Aligned_cols=84 Identities=19% Similarity=0.285 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCCCCccccccccCCCCCCeeeccccc-cCCCCCcccCCC----CCCCEEEccCCc-CCccCcccccCCCC
Q 030146 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNN-IQGTIPVELGNL----KSLISLDLYNNN-ISGKIPPSLAKLKS 154 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~L~ls~n~-l~~~~p~~~~~l~~ 154 (182)
-+++.||++++.++..--..+..+++|+.|+++++. ++..--..+..+ ++|++|+++++. ++..--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 369999999999887656678899999999999996 554322334443 479999999974 77544445778999
Q ss_pred CceEeccccc
Q 030146 155 LVFLRLNDNR 164 (182)
Q Consensus 155 L~~L~L~~N~ 164 (182)
|+.|++++++
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999976
No 146
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.90 E-value=6.5e-06 Score=68.41 Aligned_cols=100 Identities=14% Similarity=0.031 Sum_probs=57.5
Q ss_pred CCEEEEEcCCCCCC----ccccccccCCCCCCeeeccccccCCCCCcc---------------------------cCCCC
Q 030146 81 NRVTRLDLGNSNLS----GRLVPELGKLEHLQYLELYKNNIQGTIPVE---------------------------LGNLK 129 (182)
Q Consensus 81 ~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~---------------------------~~~l~ 129 (182)
.+++.|++++|.++ +.++..+..+++|+.|++++|.+.+ +|.. +..++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 45777777777765 2233334456777777777766543 2233 33444
Q ss_pred CCCEEEccCCcCCccCcccccCCCCCceEecccccCCCCCc-ccccCCCCCccC
Q 030146 130 SLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIP-RELVGISSLKVV 182 (182)
Q Consensus 130 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p-~~~~~l~~L~~L 182 (182)
+|+.++++++... .+|..+..+++|++|++++|.+++... ..+..+++|++|
T Consensus 271 ~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L 323 (592)
T 3ogk_B 271 KLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVL 323 (592)
T ss_dssp TCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEE
T ss_pred cccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEE
Confidence 4555554443222 456666677788888888887653322 334666666643
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.79 E-value=6.3e-07 Score=74.48 Aligned_cols=84 Identities=15% Similarity=0.199 Sum_probs=43.9
Q ss_pred CEEEEEcCCCCCCccccccccC-CCCCCeeeccccccCCCCCccc-CCCCCCCEEEccCCcCCccCcc-cccCCCCCceE
Q 030146 82 RVTRLDLGNSNLSGRLVPELGK-LEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNNNISGKIPP-SLAKLKSLVFL 158 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~L 158 (182)
+++.|++++ .+++..+..+.. +++|+.|++++|.+++.....+ ..+++|+.|++++|.+++..+. ....+++|+.|
T Consensus 433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 511 (594)
T 2p1m_B 433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL 511 (594)
T ss_dssp TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEE
T ss_pred CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEE
Confidence 455555544 344333333333 5566666666666543322222 3456666677766666433222 23345666777
Q ss_pred ecccccCC
Q 030146 159 RLNDNRLT 166 (182)
Q Consensus 159 ~L~~N~l~ 166 (182)
++++|+++
T Consensus 512 ~l~~~~~~ 519 (594)
T 2p1m_B 512 WMSSCSVS 519 (594)
T ss_dssp EEESSCCB
T ss_pred eeeCCCCC
Confidence 77666654
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.78 E-value=3.2e-06 Score=60.48 Aligned_cols=102 Identities=22% Similarity=0.231 Sum_probs=73.6
Q ss_pred CCCEEEEEcCCC-CCCcc----ccccccCCCCCCeeeccccccCCC----CCcccCCCCCCCEEEccCCcCCcc----Cc
Q 030146 80 DNRVTRLDLGNS-NLSGR----LVPELGKLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNISGK----IP 146 (182)
Q Consensus 80 ~~~l~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p 146 (182)
...+++|++++| .+... +...+...++|+.|++++|.+... +...+...+.|++|++++|.+... +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 467999999999 88743 334456678999999999998742 233455567899999999999853 34
Q ss_pred ccccCCCCCceEec--ccccCCCC----CcccccCCCCCcc
Q 030146 147 PSLAKLKSLVFLRL--NDNRLTGQ----IPRELVGISSLKV 181 (182)
Q Consensus 147 ~~~~~l~~L~~L~L--~~N~l~g~----~p~~~~~l~~L~~ 181 (182)
+.+...+.|++|++ ++|.+... +...+...++|++
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~ 155 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLK 155 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCE
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCE
Confidence 55677789999999 88998732 2233444455543
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.75 E-value=2.1e-06 Score=71.29 Aligned_cols=84 Identities=14% Similarity=0.168 Sum_probs=49.5
Q ss_pred CCEEEEEcCCCCCCcccccccc-CCCCCCeeecccc-ccCCC-CCcccCCCCCCCEEEccCCcCCccCcccc----cCCC
Q 030146 81 NRVTRLDLGNSNLSGRLVPELG-KLEHLQYLELYKN-NIQGT-IPVELGNLKSLISLDLYNNNISGKIPPSL----AKLK 153 (182)
Q Consensus 81 ~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~L~ls~n~l~~~~p~~~----~~l~ 153 (182)
.+++.|+++++.+.+..+..+. .+++|+.|++++| .++.. ++.....+++|++|++++|.+++..+..+ ..++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4677788877777665555553 4677777777776 33321 22333356677777777776654333322 2445
Q ss_pred CCceEeccccc
Q 030146 154 SLVFLRLNDNR 164 (182)
Q Consensus 154 ~L~~L~L~~N~ 164 (182)
+|+.|++++|.
T Consensus 185 ~L~~L~l~~~~ 195 (594)
T 2p1m_B 185 SLVSLNISCLA 195 (594)
T ss_dssp CCCEEECTTCC
T ss_pred cCcEEEecccC
Confidence 66666666664
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.51 E-value=2e-05 Score=55.98 Aligned_cols=78 Identities=17% Similarity=0.130 Sum_probs=56.4
Q ss_pred CCCCeeeccccccCCCCCcccCCCCCCCEEEccCCc-CCccCcccccCC----CCCceEeccccc-CCCCCcccccCCCC
Q 030146 105 EHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN-ISGKIPPSLAKL----KSLVFLRLNDNR-LTGQIPRELVGISS 178 (182)
Q Consensus 105 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~g~~p~~~~~l~~ 178 (182)
..|+.||++++.++..--..+..+++|+.|+++++. +++.--..+..+ ++|+.|+++++. ++..--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 469999999999876544567899999999999985 765433345554 479999999975 66322234566777
Q ss_pred CccC
Q 030146 179 LKVV 182 (182)
Q Consensus 179 L~~L 182 (182)
|++|
T Consensus 141 L~~L 144 (176)
T 3e4g_A 141 LKYL 144 (176)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 7654
No 151
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.40 E-value=0.00043 Score=46.55 Aligned_cols=56 Identities=25% Similarity=0.214 Sum_probs=43.6
Q ss_pred EEEcCCCCCC-ccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCC
Q 030146 85 RLDLGNSNLS-GRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142 (182)
Q Consensus 85 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~ 142 (182)
.++-++++++ ..+|..+. .+++.|+|++|.++...+..+..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6777888876 34555443 46899999999999666666788899999999999875
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.37 E-value=1.8e-05 Score=62.62 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=45.4
Q ss_pred CEEEEEcCCCCCCcccccccc--CCCCCCeeeccc--cccCCC-----CCccc--CCCCCCCEEEccCCcCCccCcccc-
Q 030146 82 RVTRLDLGNSNLSGRLVPELG--KLEHLQYLELYK--NNIQGT-----IPVEL--GNLKSLISLDLYNNNISGKIPPSL- 149 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~--n~l~~~-----~p~~~--~~l~~L~~L~ls~n~l~~~~p~~~- 149 (182)
+++.|++..+.+.......+. .+++|+.|+|+. |...+. +...+ ..+++|++|++.+|.+.+..+..+
T Consensus 194 ~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la 273 (362)
T 2ra8_A 194 NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL 273 (362)
T ss_dssp TCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHH
T ss_pred CCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHH
Confidence 344444444444322222222 567777777653 221111 01112 246778888888877764333322
Q ss_pred --cCCCCCceEecccccCCC
Q 030146 150 --AKLKSLVFLRLNDNRLTG 167 (182)
Q Consensus 150 --~~l~~L~~L~L~~N~l~g 167 (182)
..+++|+.|+|+.|.+.+
T Consensus 274 ~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 274 ESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp HCSSGGGCSEEECCSSCCBH
T ss_pred hCccCCCCCEEECCCCCCCh
Confidence 246778888888887764
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.30 E-value=0.00063 Score=54.37 Aligned_cols=75 Identities=12% Similarity=0.079 Sum_probs=40.1
Q ss_pred ccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecccccCCCCCcccccCC
Q 030146 99 PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGI 176 (182)
Q Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l 176 (182)
..|..+++|+.+++. +.+...-...|..+++|+.+.+..| ++..-...|.++ +|+.+++.+|.+....+..|..+
T Consensus 294 ~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 294 YCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp TTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred HHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 344455555555555 2243233344556666666666443 442334456666 77777777776653333444444
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.19 E-value=0.00057 Score=54.62 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=52.2
Q ss_pred EEEEEcCCCCCCccccccccCCCCCCeeeccccccC-----CCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCce
Q 030146 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQ-----GTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (182)
Q Consensus 83 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~ 157 (182)
++.+.+ .+.+.......|..+++|+.+++.+|.+. ...+..|..|++|+.+++.+ .+...-...|.++.+|+.
T Consensus 250 L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 250 ITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQ 327 (401)
T ss_dssp CSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCE
T ss_pred ccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccE
Confidence 444444 22233233455666777777777666553 22344566777777777763 355333445667777777
Q ss_pred EecccccCCCCCcccccCCCCCcc
Q 030146 158 LRLNDNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 158 L~L~~N~l~g~~p~~~~~l~~L~~ 181 (182)
+++..| ++..-+..|.++ +|+.
T Consensus 328 l~lp~~-l~~I~~~aF~~~-~L~~ 349 (401)
T 4fdw_A 328 LTIPAN-VTQINFSAFNNT-GIKE 349 (401)
T ss_dssp EEECTT-CCEECTTSSSSS-CCCE
T ss_pred EEECcc-ccEEcHHhCCCC-CCCE
Confidence 777544 442333445555 5543
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.18 E-value=0.00094 Score=44.83 Aligned_cols=35 Identities=29% Similarity=0.166 Sum_probs=15.7
Q ss_pred EEEEEcCCCCCCccccccccCCCCCCeeecccccc
Q 030146 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNI 117 (182)
Q Consensus 83 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 117 (182)
++.|+|++|.++...+..|..+++|+.|+|++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444433333344444444444444443
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.52 E-value=0.00024 Score=56.08 Aligned_cols=87 Identities=17% Similarity=0.270 Sum_probs=58.9
Q ss_pred CCCEEEEEcCC--CCCCcc-----ccccc--cCCCCCCeeeccccccCCCCCccc---CCCCCCCEEEccCCcCCcc---
Q 030146 80 DNRVTRLDLGN--SNLSGR-----LVPEL--GKLEHLQYLELYKNNIQGTIPVEL---GNLKSLISLDLYNNNISGK--- 144 (182)
Q Consensus 80 ~~~l~~L~l~~--n~l~~~-----~~~~~--~~l~~L~~L~l~~n~l~~~~p~~~---~~l~~L~~L~ls~n~l~~~--- 144 (182)
.+.++.|+|.. +...+. +...+ ..+++|+.|++.+|.+.+..+..+ ..+++|+.|+++.|.+.+.
T Consensus 218 lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~ 297 (362)
T 2ra8_A 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR 297 (362)
T ss_dssp CTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHH
T ss_pred CCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHH
Confidence 35788888743 221111 11122 247899999999998864322222 3578999999999999863
Q ss_pred -CcccccCCCCCceEecccccCC
Q 030146 145 -IPPSLAKLKSLVFLRLNDNRLT 166 (182)
Q Consensus 145 -~p~~~~~l~~L~~L~L~~N~l~ 166 (182)
++..+.++++|+.|+++.|.++
T Consensus 298 ~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 298 LLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHhhcccCCcceEEECCCCcCC
Confidence 3344456799999999999876
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.40 E-value=0.012 Score=46.13 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=17.5
Q ss_pred cCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 125 LGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 125 ~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
+..+.+|+.+.+.++.+...-...|.++.+|+.+++.
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 4445555555555444442222344555555555553
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.36 E-value=0.0059 Score=48.27 Aligned_cols=95 Identities=13% Similarity=0.043 Sum_probs=56.7
Q ss_pred CEEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 82 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
.++.+.+..+ +...-...|..+.+|+.+++..+ ++..-...|..+.+|+.+++..+ ++..-...|.++.+|+.+++.
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 3455555433 33233345667777777777543 44333456777788888877665 543334567777888888776
Q ss_pred cccCCCCCcccccCCCCCcc
Q 030146 162 DNRLTGQIPRELVGISSLKV 181 (182)
Q Consensus 162 ~N~l~g~~p~~~~~l~~L~~ 181 (182)
.+ ++ .+...|.++++|+.
T Consensus 375 ~~-~~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 375 KR-LE-QYRYDFEDTTKFKW 392 (394)
T ss_dssp GG-GG-GGGGGBCTTCEEEE
T ss_pred CC-CE-EhhheecCCCCCcE
Confidence 54 22 33456777776654
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.12 E-value=0.024 Score=44.70 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=15.9
Q ss_pred ccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecc
Q 030146 124 ELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLN 161 (182)
Q Consensus 124 ~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (182)
.|..+.+|+.+++..+ ++..-...|.++.+|+.+.+.
T Consensus 306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence 3444555555555432 221112334444555555543
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.62 E-value=0.035 Score=43.74 Aligned_cols=92 Identities=9% Similarity=0.127 Sum_probs=58.9
Q ss_pred EEEEEcCCCCCCccccccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEeccc
Q 030146 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLND 162 (182)
Q Consensus 83 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (182)
++.+.+. +.+...-...|..+.+|+.+++..+ ++..-...|..|.+|+.+.+..+ ++..-...|.++.+|+.+++.+
T Consensus 290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESS
T ss_pred cccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECC
Confidence 4444443 2233233345777888999988764 44334567889999999999754 5533345799999999999988
Q ss_pred ccCCCCCcccccCCCCCc
Q 030146 163 NRLTGQIPRELVGISSLK 180 (182)
Q Consensus 163 N~l~g~~p~~~~~l~~L~ 180 (182)
|... -..+....+|+
T Consensus 367 ~~~~---~~~~~~~~~L~ 381 (394)
T 4gt6_A 367 SRSQ---WNAISTDSGLQ 381 (394)
T ss_dssp CHHH---HHTCBCCCCC-
T ss_pred ceee---hhhhhccCCCC
Confidence 7543 12344444444
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.38 E-value=0.0051 Score=44.30 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=40.0
Q ss_pred CCEEEEEcCCC-CCCcc----ccccccCCCCCCeeeccccccCCC----CCcccCCCCCCCEEEccCCcCCcc----Ccc
Q 030146 81 NRVTRLDLGNS-NLSGR----LVPELGKLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNISGK----IPP 147 (182)
Q Consensus 81 ~~l~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~ 147 (182)
..+++|+|+++ .+... +-..+..=+.|+.|+|++|.+... +...+..-+.|+.|+|++|.+... +-+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 45666666654 54421 122233345566666666666521 111222335566666666666532 112
Q ss_pred cccCCCCCceEecccc
Q 030146 148 SLAKLKSLVFLRLNDN 163 (182)
Q Consensus 148 ~~~~l~~L~~L~L~~N 163 (182)
.+..-+.|+.|+|++|
T Consensus 121 aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTTTCCCSEEECCCC
T ss_pred HHhhCCceeEEECCCC
Confidence 2333345666666543
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.19 E-value=0.051 Score=42.41 Aligned_cols=65 Identities=12% Similarity=0.038 Sum_probs=49.4
Q ss_pred cccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecccc
Q 030146 98 VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDN 163 (182)
Q Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N 163 (182)
...|..+.+|+.+.+..+.+...-...|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..+
T Consensus 279 ~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 279 YLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 345777889999999888877555667889999999999754 55233456888999998888654
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.94 E-value=0.039 Score=43.50 Aligned_cols=78 Identities=18% Similarity=0.085 Sum_probs=52.7
Q ss_pred ccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecccccCCCCCcccccCCCCCc
Q 030146 101 LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLK 180 (182)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~ 180 (182)
|..+.+|+.+.+..+ +...-...|..+.+|+.+++..+ ++..-...|.++.+|+.+++..| ++..-...|.++.+|+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 455667777776544 44233456778889999988754 55333456888999999998766 5533345678888886
Q ss_pred c
Q 030146 181 V 181 (182)
Q Consensus 181 ~ 181 (182)
.
T Consensus 370 ~ 370 (394)
T 4fs7_A 370 K 370 (394)
T ss_dssp E
T ss_pred E
Confidence 5
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.20 E-value=0.0087 Score=43.08 Aligned_cols=86 Identities=12% Similarity=0.161 Sum_probs=59.1
Q ss_pred CCCEEEEEcCCCCCCccccc----cccCCCCCCeeeccccccCCC----CCcccCCCCCCCEEEccCC---cCCcc----
Q 030146 80 DNRVTRLDLGNSNLSGRLVP----ELGKLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNN---NISGK---- 144 (182)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n---~l~~~---- 144 (182)
...++.|+|++|.+.+.--. .+..=+.|+.|+|++|.+... +-..+..-+.|+.|++++| .+...
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 45799999999999853222 233447899999999999742 2234555667999999865 33321
Q ss_pred CcccccCCCCCceEecccccC
Q 030146 145 IPPSLAKLKSLVFLRLNDNRL 165 (182)
Q Consensus 145 ~p~~~~~l~~L~~L~L~~N~l 165 (182)
+.+.+..-+.|+.|+++.|..
T Consensus 149 ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhCCCcCeEeccCCCc
Confidence 223344557899999987754
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.02 E-value=32 Score=21.23 Aligned_cols=40 Identities=10% Similarity=-0.079 Sum_probs=23.5
Q ss_pred cccccCCCCCCeeeccccccCCCCCcccCCCCCCCEEEccC
Q 030146 98 VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYN 138 (182)
Q Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~ 138 (182)
...|..+..|+.+.+..+- +..-...|..|.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 3456666777777666543 223344566777777776654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=52.75 E-value=29 Score=21.45 Aligned_cols=46 Identities=13% Similarity=0.045 Sum_probs=33.3
Q ss_pred cCCCCCcccCCCCCCCEEEccCCcCCccCcccccCCCCCceEecccc
Q 030146 117 IQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDN 163 (182)
Q Consensus 117 l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N 163 (182)
++..-...|..+.+|+.+.+..+ ++..-...|.++.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34344467889999999999764 44233457899999999998764
Done!