BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030147
         (182 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate
           Dehydrogenase From Thiobacillus Ferrooxidans With 3-
           Isopropylmalate
 pdb|1A05|B Chain B, Crystal Structure Of The Complex Of 3-Isopropylmalate
           Dehydrogenase From Thiobacillus Ferrooxidans With 3-
           Isopropylmalate
          Length = 358

 Score = 28.1 bits (61), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 22/54 (40%)

Query: 118 RPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYV----------PLQFRVIF 161
           R WR+V T++ +DYP V+            ++H+YV          P QF V+ 
Sbjct: 198 RLWREVVTEVARDYPDVR------------LSHMYVDNAAMQLIRAPAQFDVLL 239


>pdb|3HJB|A Chain A, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
           Isomerase From Vibrio Cholerae.
 pdb|3HJB|B Chain B, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
           Isomerase From Vibrio Cholerae.
 pdb|3HJB|C Chain C, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
           Isomerase From Vibrio Cholerae.
 pdb|3HJB|D Chain D, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
           Isomerase From Vibrio Cholerae
          Length = 574

 Score = 26.6 bits (57), Expect = 7.7,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 73  LILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPW 120
           L+  K+F+G + T+++    +++Q+T     NL+ M  + + V+G  W
Sbjct: 482 LVPFKVFEGNRPTNSI----LVKQITPRTLGNLIAMYEHKIFVQGVIW 525


>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
           Mn-Amppnp
 pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
           Mn-Amppnp
          Length = 783

 Score = 26.6 bits (57), Expect = 7.8,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 39/94 (41%)

Query: 67  FGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTK 126
           FG  L   +D I K     S + ++ +  + T   +   +F  + G     +  R++K K
Sbjct: 513 FGMDLQACIDLIEKPMGIMSILEEECMFPKATDMTFKAKLFDNHLGKSANFQKPRNIKGK 572

Query: 127 IKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVI 160
            +  +  + Y     + ++GW+     PL   V+
Sbjct: 573 PEAHFSLIHYAGIVDYNIIGWLQKNKDPLNETVV 606


>pdb|3I45|A Chain A, Crystal Structure Of Putative Twin-Arginine Translocation
           Pathway Signal Protein From Rhodospirillum Rubrum Atcc
           11170
          Length = 387

 Score = 26.6 bits (57), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 12/106 (11%)

Query: 65  GPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPW--NNLMFMIYYGVVVEGRPWRD 122
           G F       L K  +  +     A + V+  LT  P   N L      G +V G PW D
Sbjct: 202 GLFNVLFGADLPKFVREGRVRGLFAGRQVVSMLTGEPEYLNPLKDEAPEGWIVTGYPWYD 261

Query: 123 VKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMC 168
           + T   + +       W   P VG +          V +++L AM 
Sbjct: 262 IDTAPHRAFVEAYRARWKEDPFVGSL----------VGYNTLTAMA 297


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.141    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,869,284
Number of Sequences: 62578
Number of extensions: 179875
Number of successful extensions: 425
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 424
Number of HSP's gapped (non-prelim): 4
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)