Query 030147
Match_columns 182
No_of_seqs 159 out of 1068
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 09:15:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030147.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030147hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1944 Peroxisomal membrane p 100.0 8.3E-42 1.8E-46 272.7 14.9 163 16-180 46-214 (222)
2 PF04117 Mpv17_PMP22: Mpv17 / 99.9 4.9E-26 1.1E-30 150.1 4.1 68 111-179 1-68 (68)
3 PF10929 DUF2811: Protein of u 55.5 23 0.00049 22.2 3.4 30 35-64 11-40 (57)
4 PF03818 MadM: Malonate/sodium 45.8 77 0.0017 20.1 6.5 34 11-44 3-36 (60)
5 KOG0769 Predicted mitochondria 33.6 1.2E+02 0.0025 25.5 5.3 72 34-105 46-126 (308)
6 PF00140 Sigma70_r1_2: Sigma-7 32.1 23 0.0005 19.8 0.8 18 7-24 2-19 (37)
7 smart00337 BCL BCL (B-Cell lym 30.2 1.4E+02 0.003 20.5 4.6 29 34-63 34-62 (100)
8 TIGR02230 ATPase_gene1 F0F1-AT 30.1 1.4E+02 0.003 20.9 4.6 33 50-82 39-73 (100)
9 COG0534 NorM Na+-driven multid 28.0 4.2E+02 0.009 23.3 11.2 83 23-105 65-151 (455)
10 PF03988 DUF347: Repeat of Unk 26.5 1.6E+02 0.0034 18.0 5.1 44 22-72 5-48 (55)
11 TIGR02163 napH_ ferredoxin-typ 26.0 2.8E+02 0.0061 22.4 6.5 80 50-131 4-102 (255)
12 PRK09609 hypothetical protein; 25.2 3.9E+02 0.0085 22.7 7.2 54 27-82 58-111 (312)
13 COG1284 Uncharacterized conser 23.9 3.2E+02 0.0069 22.8 6.4 56 19-74 111-185 (289)
14 PRK04307 putative disulfide ox 22.1 95 0.0021 24.9 2.9 57 121-180 159-215 (218)
15 PF04854 DUF624: Protein of un 21.1 2.3E+02 0.005 18.0 4.2 36 99-135 21-60 (77)
No 1
>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]
Probab=100.00 E-value=8.3e-42 Score=272.70 Aligned_cols=163 Identities=36% Similarity=0.658 Sum_probs=155.3
Q ss_pred HhhCcHHHHHHHHHHHH-HHHHHHHHhHhcC-----CcchHHHHHHHHHHhhhhcchhHHHHHHHHHhhccCCCchHHHH
Q 030147 16 LQQHPLRTKAITAGVLS-AISDIVAQKLTGI-----QKLQLRRLLLKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVA 89 (182)
Q Consensus 16 l~~~Pl~t~~~t~~~l~-~~gD~iaQ~~~~~-----~~~d~~R~~~~~~~G~~~~gp~~~~wy~~L~~~~~~~~~~~~~~ 89 (182)
...+|++++.++++.+. ..||+++|.++.+ +++|+.|++||+++|+++.||.+|+||+.||+++|. ++..+++
T Consensus 46 ~~~~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~~~~~~~d~~rtlr~~~~G~~f~gp~~~~Wy~~L~~~~p~-~~~~~~~ 124 (222)
T KOG1944|consen 46 FSLYPLLTKAITTSLLLAAAGDVISQSLEGRSKKLFQTLDLTRTLRMGIFGFLFVGPTLHYWYRLLSKLFPK-KTLITVV 124 (222)
T ss_pred hhhhhHHHHHHHHHHHHHHhchhhhhhhhhhcccccccccHHHHHHHHhhhhheeccchhHHHHHHHHHccC-ccHHHHH
Confidence 35688888888888888 9999999998842 568999999999999889999999999999999998 7999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCChhhHHHHHHhhChHHHhhccccchHHHhHHhhcccCcchhhHhHHHHHHH
Q 030147 90 KKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCW 169 (182)
Q Consensus 90 ~Kvl~dq~~~~P~~~~~f~~~~~~~l~g~s~~~~~~~~~~~~~~~~~~~~~~Wp~~~~inF~~vP~~~Rvl~~~~v~~~W 169 (182)
+|++.||++++|+.+.+|+.+++ ++||++.++..++++++++|+++++|++||++|++||++||+++|++++|+++++|
T Consensus 125 ~kvl~dql~~~P~~~~~ff~~~~-~legk~~~~~~~~~~~~~~p~l~~~~~~WP~~q~inF~~VP~~~rvl~~~~vsl~W 203 (222)
T KOG1944|consen 125 KKVLLDQLVFAPLFIVVFFLLMG-LLEGKTNEEAKAKLKRKFWPTLKANWMVWPLVQFINFRLVPLQYRVLFVNIVSLVW 203 (222)
T ss_pred HHHHHhhhhhchHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHhhhheecchhheeeeEEccccceehhhhhHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcC
Q 030147 170 GIFLNLRALPK 180 (182)
Q Consensus 170 ~~~LS~~~~~~ 180 (182)
|+|||++++++
T Consensus 204 ~~~Ls~~~~~~ 214 (222)
T KOG1944|consen 204 NTYLSYKNASL 214 (222)
T ss_pred HHHHHHHhhcc
Confidence 99999999887
No 2
>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane
Probab=99.92 E-value=4.9e-26 Score=150.12 Aligned_cols=68 Identities=37% Similarity=0.859 Sum_probs=65.9
Q ss_pred HHHHhcCCChhhHHHHHHhhChHHHhhccccchHHHhHHhhcccCcchhhHhHHHHHHHHHHHHhhcCc
Q 030147 111 YGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRALP 179 (182)
Q Consensus 111 ~~~~l~g~s~~~~~~~~~~~~~~~~~~~~~~Wp~~~~inF~~vP~~~Rvl~~~~v~~~W~~~LS~~~~~ 179 (182)
|+ ++||+|++++.+++|++++++++++|++|||+|++||.+||+++|++++|+++++||+|||+++|+
T Consensus 1 Mg-~l~g~s~~~~~~~l~~~~~~~~~~~~~~Wp~~~~vnF~~vP~~~Rv~~~~~v~~~W~~~LS~~~~r 68 (68)
T PF04117_consen 1 MG-LLEGKSWEEIKEKLKRDYWPTLKASWKFWPPAQIVNFRYVPPHYRVLFVNVVSFFWNTYLSYIANR 68 (68)
T ss_pred CC-cccCCCHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHhcC
Confidence 46 899999999999999999999999999999999999999999999999999999999999999885
No 3
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=55.46 E-value=23 Score=22.25 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=24.5
Q ss_pred HHHHHHhHhcCCcchHHHHHHHHHHhhhhc
Q 030147 35 SDIVAQKLTGIQKLQLRRLLLKVLFGCAYL 64 (182)
Q Consensus 35 gD~iaQ~~~~~~~~d~~R~~~~~~~G~~~~ 64 (182)
-|.+.+.++....+|-.|.+..++-|+++.
T Consensus 11 ~~~m~~fie~hP~WDQ~Rl~~aALa~FL~Q 40 (57)
T PF10929_consen 11 HQAMKDFIETHPNWDQYRLFQAALAGFLLQ 40 (57)
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 356677788788999999999999998754
No 4
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=45.78 E-value=77 Score=20.08 Aligned_cols=34 Identities=24% Similarity=0.188 Sum_probs=30.9
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHHHHHHHHhHhc
Q 030147 11 QYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTG 44 (182)
Q Consensus 11 ~Y~~~l~~~Pl~t~~~t~~~l~~~gD~iaQ~~~~ 44 (182)
...+.++++.++|....-|+++.++..++-++.+
T Consensus 3 ~i~~vl~~ngLitaFa~vG~~m~~S~~lS~~LT~ 36 (60)
T PF03818_consen 3 MIEKVLTKNGLITAFAVVGIIMWVSYWLSKKLTR 36 (60)
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567889999999999999999999999999986
No 5
>KOG0769 consensus Predicted mitochondrial carrier protein [Energy production and conversion]
Probab=33.57 E-value=1.2e+02 Score=25.46 Aligned_cols=72 Identities=17% Similarity=0.043 Sum_probs=41.1
Q ss_pred HHHHHHHhHhcCCcchHHHHHHHHHHhhhhcchhHHHHHHHHHhhccCCC---------chHHHHHHHHHHHHhhhhHHH
Q 030147 34 ISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILDKIFKGKK---------DTSTVAKKVVLEQLTSSPWNN 104 (182)
Q Consensus 34 ~gD~iaQ~~~~~~~~d~~R~~~~~~~G~~~~gp~~~~wy~~L~~~~~~~~---------~~~~~~~Kvl~dq~~~~P~~~ 104 (182)
..|++.|.+.++.-....|-+--...+.+++-.+-++||.++.+..-+++ ++.-.+.-=.+++++-+|+..
T Consensus 46 t~dvm~eiik~eg~lsLYqGl~p~~~~t~iSnFVYFY~y~~~k~~~~~~~~s~s~~t~~~Lllga~AGsinvl~T~Plwv 125 (308)
T KOG0769|consen 46 TSDVMWEIIKEEGVLSLYQGLGPVLVSTFISNFVYFYTYSYFKAVASKGKLSQSSGTKADLLLGAAAGSINVLLTTPLWV 125 (308)
T ss_pred HHHHHHHHHhccchHHHhccccHHHHHHHHhhhHhhhhHHHHHHHHhcCCCcCCcchHHHHHHHHHHhhhHHHhcChHHH
Confidence 34555555544333444455555566666677777899999877654321 111122223567778888865
Q ss_pred H
Q 030147 105 L 105 (182)
Q Consensus 105 ~ 105 (182)
.
T Consensus 126 v 126 (308)
T KOG0769|consen 126 V 126 (308)
T ss_pred H
Confidence 4
No 6
>PF00140 Sigma70_r1_2: Sigma-70 factor, region 1.2; InterPro: IPR009042 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SMY_F 1IW7_P 1SIG_A 3IYD_F 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P 3DXJ_P ....
Probab=32.12 E-value=23 Score=19.84 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhCcHHHH
Q 030147 7 KGLQQYLIQLQQHPLRTK 24 (182)
Q Consensus 7 ~~~~~Y~~~l~~~Pl~t~ 24 (182)
.....|.+...++|++|.
T Consensus 2 D~l~~Yl~ei~~~~LLt~ 19 (37)
T PF00140_consen 2 DSLRLYLKEIGRYPLLTA 19 (37)
T ss_dssp HHHHHHHHHHHHS-EETT
T ss_pred cHHHHHHHHHcCCCCCCH
Confidence 346789999999999874
No 7
>smart00337 BCL BCL (B-Cell lymphoma); contains BH1, BH2 regions. (BH1, BH2, (BH3 (one helix only)) and not BH4(one helix only)). Involved in apoptosis regulation
Probab=30.24 E-value=1.4e+02 Score=20.51 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=19.9
Q ss_pred HHHHHHHhHhcCCcchHHHHHHHHHHhhhh
Q 030147 34 ISDIVAQKLTGIQKLQLRRLLLKVLFGCAY 63 (182)
Q Consensus 34 ~gD~iaQ~~~~~~~~d~~R~~~~~~~G~~~ 63 (182)
...+..+.+ ++..++|.|.+.+..+|+.+
T Consensus 34 f~~Va~~lf-~dg~inWGRIval~~F~~~l 62 (100)
T smart00337 34 FGEVATELF-SDGNINWGRVVALLSFGGAL 62 (100)
T ss_pred HHHHHHHHH-ccCCCCHHHHHHHHHHHHHH
Confidence 334444434 33559999999999999864
No 8
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=30.07 E-value=1.4e+02 Score=20.91 Aligned_cols=33 Identities=18% Similarity=0.091 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhhhcchhHHHHH--HHHHhhccCC
Q 030147 50 LRRLLLKVLFGCAYLGPFGHFLH--LILDKIFKGK 82 (182)
Q Consensus 50 ~~R~~~~~~~G~~~~gp~~~~wy--~~L~~~~~~~ 82 (182)
++....+.++|..+.+|+.-.-| .+||+.++++
T Consensus 39 ~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~ 73 (100)
T TIGR02230 39 WEGLGMFGLIGWSVAIPTLLGVAVGIWLDRHYPSP 73 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 44556688899888889887777 5999999974
No 9
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=28.03 E-value=4.2e+02 Score=23.29 Aligned_cols=83 Identities=19% Similarity=0.249 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCCcchHHHHHHHHHHhhhhcc-hhHHHHHHHHH---hhccCCCchHHHHHHHHHHHHh
Q 030147 23 TKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLG-PFGHFLHLILD---KIFKGKKDTSTVAKKVVLEQLT 98 (182)
Q Consensus 23 t~~~t~~~l~~~gD~iaQ~~~~~~~~d~~R~~~~~~~G~~~~g-p~~~~wy~~L~---~~~~~~~~~~~~~~Kvl~dq~~ 98 (182)
.-++..++..+.+=++||.+-.++.-+.+|+.+.+++-.++.| ++.-..+-+.| +.++++++......+=+-=..+
T Consensus 65 ~~~~~~gl~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~ 144 (455)
T COG0534 65 IIAIFIGLGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILL 144 (455)
T ss_pred HHHHHHHHHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHH
Confidence 3456778888899999999977677788899888888666666 44444444444 3344323344444443333444
Q ss_pred hhhHHHH
Q 030147 99 SSPWNNL 105 (182)
Q Consensus 99 ~~P~~~~ 105 (182)
..|....
T Consensus 145 ~~~~~~~ 151 (455)
T COG0534 145 GAPFALL 151 (455)
T ss_pred HHHHHHH
Confidence 5555433
No 10
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=26.55 E-value=1.6e+02 Score=17.97 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcCCcchHHHHHHHHHHhhhhcchhHHHHH
Q 030147 22 RTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLH 72 (182)
Q Consensus 22 ~t~~~t~~~l~~~gD~iaQ~~~~~~~~d~~R~~~~~~~G~~~~gp~~~~wy 72 (182)
+++.++..+-...||.++|. .+........+++..+...+ ..||
T Consensus 5 ~a~ilt~~lGt~~~D~l~~~------lglg~~~~~~~~~~~l~~~~-~~~~ 48 (55)
T PF03988_consen 5 IAKILTTTLGTTAGDFLSKT------LGLGYLISTLIFAALLAVVL-ALWY 48 (55)
T ss_pred HHHHHHHHhHHHHHHHHHhc------cCccHHHHHHHHHHHHHHHH-HHHH
Confidence 57888999999999999994 44555555555555543333 3444
No 11
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=26.03 E-value=2.8e+02 Score=22.40 Aligned_cols=80 Identities=18% Similarity=0.263 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhhhcchhHHHHH--HHHH--hh---ccCCCchHHHHHHHHHHHHhhhhHHHHHHH--HHHHHHhcCC--
Q 030147 50 LRRLLLKVLFGCAYLGPFGHFLH--LILD--KI---FKGKKDTSTVAKKVVLEQLTSSPWNNLMFM--IYYGVVVEGR-- 118 (182)
Q Consensus 50 ~~R~~~~~~~G~~~~gp~~~~wy--~~L~--~~---~~~~~~~~~~~~Kvl~dq~~~~P~~~~~f~--~~~~~~l~g~-- 118 (182)
+||+...++...++.||....|. .-|. +. +|- .+....+.-++....+..+++..... ...+ ++-|+
T Consensus 4 ~r~~~~~~~~~lf~~~~~~~~~~~~G~l~~s~~~~~~~l-~dP~~~lq~~~a~~~~~~~~~~~~~iv~~~~~-l~~GR~f 81 (255)
T TIGR02163 4 LRRLVQLSILGLFLLGPYAGVWILKGNLSSSRLLGTIPL-SDPLITLQILLAGHSPPTNALIGALIIVAFYA-LFGGRAF 81 (255)
T ss_pred HHHHHHHHHHHHHHcchhhcceEEEecchHHHhcCCccC-cCHHHHHHHHHhcChhhHHHHHHHHHHHHHHH-HHhcccc
Confidence 57888999999888888877664 2332 22 333 45566666677776666666555433 2234 55565
Q ss_pred --------ChhhHHHHHHhhC
Q 030147 119 --------PWRDVKTKIKKDY 131 (182)
Q Consensus 119 --------s~~~~~~~~~~~~ 131 (182)
...|..++++++.
T Consensus 82 CgwiCP~g~~~el~~~l~~k~ 102 (255)
T TIGR02163 82 CSWVCPVNLVTDFAAWLRRKL 102 (255)
T ss_pred eeccCCchHHHHHHHHHHHhh
Confidence 2456666665543
No 12
>PRK09609 hypothetical protein; Provisional
Probab=25.23 E-value=3.9e+02 Score=22.70 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhHhcCCcchHHHHHHHHHHhhhhcchhHHHHHHHHHhhccCC
Q 030147 27 TAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILDKIFKGK 82 (182)
Q Consensus 27 t~~~l~~~gD~iaQ~~~~~~~~d~~R~~~~~~~G~~~~gp~~~~wy~~L~~~~~~~ 82 (182)
.+++..+++|++.-.+.+ ..+.+.=++.-++.|. +.|-+..+.|+.+.+.|.++
T Consensus 58 ~G~ivG~lsDLLs~li~p-G~ffPgFTLsa~l~Gl-I~Glf~~~~fk~~~~~f~~~ 111 (312)
T PRK09609 58 VGFFTGLLSDLISFLFVP-GVYHPYYTLAAMVYGF-IPGIVGWFFFKFGKKFFGKE 111 (312)
T ss_pred HHHHHHHHHHHHHHHhcC-CccCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHH
Confidence 467778899999977754 6888999999888887 47988888999999998863
No 13
>COG1284 Uncharacterized conserved protein [Function unknown]
Probab=23.90 E-value=3.2e+02 Score=22.83 Aligned_cols=56 Identities=25% Similarity=0.334 Sum_probs=37.1
Q ss_pred CcHHHHHHHHHHHHHHH--------------HHHHHhHhcCCcchHHHHHHH-----HHHhhhhcchhHHHHHHH
Q 030147 19 HPLRTKAITAGVLSAIS--------------DIVAQKLTGIQKLQLRRLLLK-----VLFGCAYLGPFGHFLHLI 74 (182)
Q Consensus 19 ~Pl~t~~~t~~~l~~~g--------------D~iaQ~~~~~~~~d~~R~~~~-----~~~G~~~~gp~~~~wy~~ 74 (182)
++.+-.++-+|++.++| |++||.+.++..+|..++.-+ .+.++++.+++-+..|..
T Consensus 111 ~~~ll~aifgG~l~G~G~glv~r~ggStGGtdIlA~~l~kk~g~~iG~~ll~vd~~i~~~a~~~~~~~~~~lytl 185 (289)
T COG1284 111 IDPLLAALFGGLLLGIGLGLVFRHGGSTGGTDILALILNKKFGISVGKILLLVDGFILLIAALVFGPLPNALYTL 185 (289)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 66667888899988876 999999998777777655322 222333344566666643
No 14
>PRK04307 putative disulfide oxidoreductase; Provisional
Probab=22.13 E-value=95 Score=24.90 Aligned_cols=57 Identities=7% Similarity=0.053 Sum_probs=41.5
Q ss_pred hhHHHHHHhhChHHHhhccccchHHHhHHhhcccCcchhhHhHHHHHHHHHHHHhhcCcC
Q 030147 121 RDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRALPK 180 (182)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~Wp~~~~inF~~vP~~~Rvl~~~~v~~~W~~~LS~~~~~~ 180 (182)
+...+++++.+...|..+|-.+|.-++++ .|.-.-+.|....-+.=-..+|+..++|
T Consensus 159 ~~~l~~~q~~~~~~y~~gwyl~p~w~f~~---Maq~~~~~f~~~~~~l~~~~~~~~~~~~ 215 (218)
T PRK04307 159 GVTLSSVQQWFVDLYSEGWYLLPPWHFMN---MAQACLLAFGLCLVLLVVMSGAWALKLA 215 (218)
T ss_pred cchhHHHHHHHhhhccccccccccHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34567888888999999999999999954 6777777776665555555666654444
No 15
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=21.09 E-value=2.3e+02 Score=17.99 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHHHhcCCC----hhhHHHHHHhhChHHH
Q 030147 99 SSPWNNLMFMIYYGVVVEGRP----WRDVKTKIKKDYPTVQ 135 (182)
Q Consensus 99 ~~P~~~~~f~~~~~~~l~g~s----~~~~~~~~~~~~~~~~ 135 (182)
..|...+.+.+... ..++++ +++-++..|+++.+..
T Consensus 21 igPA~~Al~~~~~~-~~~~~~~~~~~~~f~~~fk~nf~~~~ 60 (77)
T PF04854_consen 21 IGPATAALYYVVRK-WVRDEEDSYLFRDFWRAFKQNFKQSL 60 (77)
T ss_pred HHHHHHHHHHHHHH-HHcCCccChHHHHHHHHHHHHHHHHH
Confidence 56666667766666 555552 3344444555554433
Done!