Query 030147
Match_columns 182
No_of_seqs 159 out of 1068
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 14:51:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030147.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030147hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqc_A Hypothetical 13.2 kDa p 38.4 11 0.00036 25.1 1.0 26 33-58 31-57 (118)
2 1xrd_A LH-1, light-harvesting 26.5 81 0.0028 18.5 3.4 31 47-77 7-43 (52)
3 2ksd_A Aerobic respiration con 25.8 3.9 0.00013 28.4 -2.9 69 6-75 5-76 (115)
4 1p58_D Envelope protein M; fla 21.3 1.5E+02 0.0051 18.7 4.2 38 5-43 25-62 (75)
5 2l2t_A Receptor tyrosine-prote 11.6 2.4E+02 0.008 15.8 3.1 22 161-182 22-43 (44)
6 1m93_A Serine proteinase inhib 11.5 43 0.0015 19.5 -0.3 29 95-123 14-42 (55)
7 2kua_A BCL-2-like protein 10; 11.0 1.6E+02 0.0054 21.4 2.6 18 46-63 88-105 (170)
8 1rh5_B Preprotein translocase 11.0 2E+02 0.0068 18.0 2.7 26 48-73 32-57 (74)
9 2qho_B E3 ubiquitin-protein li 11.0 1.5E+02 0.005 17.2 1.9 18 114-131 19-36 (53)
10 3mp7_B Preprotein translocase 10.1 2.3E+02 0.008 16.9 2.7 27 47-73 27-53 (61)
No 1
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=38.37 E-value=11 Score=25.12 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=19.4
Q ss_pred HHHHHHHHhHh-cCCcchHHHHHHHHH
Q 030147 33 AISDIVAQKLT-GIQKLQLRRLLLKVL 58 (182)
Q Consensus 33 ~~gD~iaQ~~~-~~~~~d~~R~~~~~~ 58 (182)
.+-|++||.-. ....++..|++++.+
T Consensus 31 sledilaqfeis~~sayniqr~l~~ic 57 (118)
T 2vqc_A 31 TLEDILAQFEISVPSAYNIQRALKAIC 57 (118)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccchHhHHHHHHHHHH
Confidence 46799999733 335689999999865
No 2
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=26.54 E-value=81 Score=18.52 Aligned_cols=31 Identities=19% Similarity=0.138 Sum_probs=21.9
Q ss_pred cchHHHHHHHHHHhhhhcchhHHHH------HHHHHh
Q 030147 47 KLQLRRLLLKVLFGCAYLGPFGHFL------HLILDK 77 (182)
Q Consensus 47 ~~d~~R~~~~~~~G~~~~gp~~~~w------y~~L~~ 77 (182)
-+|++|++--.....+..+-..|+- |++||.
T Consensus 7 ~fDPrr~Lva~~~fl~vlAl~IHfilLSt~~fNWl~~ 43 (52)
T 1xrd_A 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLEG 43 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEchhHHHHHHHHHHHHHHHHHHHHhhccCCcccccC
Confidence 4799998877666666677777765 566663
No 3
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=25.76 E-value=3.9 Score=28.41 Aligned_cols=69 Identities=13% Similarity=0.199 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHhHhc---CCcchHHHHHHHHHHhhhhcchhHHHHHHHH
Q 030147 6 KKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTG---IQKLQLRRLLLKVLFGCAYLGPFGHFLHLIL 75 (182)
Q Consensus 6 ~~~~~~Y~~~l~~~Pl~t~~~t~~~l~~~gD~iaQ~~~~---~~~~d~~R~~~~~~~G~~~~gp~~~~wy~~L 75 (182)
+...+.|.+...|--...-++.++++..+-+++.|.... .++.++.-..|...+|.+ .+|+.-|++..+
T Consensus 5 k~~aq~yvd~v~rlG~~rfSlL~~~~l~v~A~~~q~~~~~~~~G~v~~~Di~rsI~Fgli-~aP~viYFls~v 76 (115)
T 2ksd_A 5 RLLAQYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTMVLHGQVESIDVIRSIFFGLL-ITPWAVYFLSVV 76 (115)
T ss_dssp ----------CCCSSTTSSCCSHHHHHHHHHHHHHHHHHHHSCCCSSSSSCCSTTTHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHhhhhcccchHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 345577888888888888888888888899999998663 356666666777788874 789988888655
No 4
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=21.29 E-value=1.5e+02 Score=18.67 Aligned_cols=38 Identities=21% Similarity=0.049 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHhHh
Q 030147 5 AKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT 43 (182)
Q Consensus 5 ~~~~~~~Y~~~l~~~Pl~t~~~t~~~l~~~gD~iaQ~~~ 43 (182)
..+-.++-.+..-|||..+-++. .+.+.+|+...|++.
T Consensus 25 ~~~~l~kvE~WilrNp~~al~a~-~~~w~lG~~~~Qrvi 62 (75)
T 1p58_D 25 AWKHAQRIETWILRHPGFTIMAA-ILAYTIGTTHFQRVL 62 (75)
T ss_pred HHHHHHHHHHHHHHChHHHHHHH-HHHHHHcCChHHHHH
Confidence 34455677788889999988888 888899999999863
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=11.63 E-value=2.4e+02 Score=15.82 Aligned_cols=22 Identities=9% Similarity=0.468 Sum_probs=14.2
Q ss_pred HhHHHHHHHHHHHHhhcCcCCC
Q 030147 161 FHSLVAMCWGIFLNLRALPKAK 182 (182)
Q Consensus 161 ~~~~v~~~W~~~LS~~~~~~~~ 182 (182)
.+.++.+.|-.|+--..++++|
T Consensus 22 ~v~ii~~~~~~~~RRRr~~~kr 43 (44)
T 2l2t_A 22 ILVIVGLTFAVYVRRKSIKKKR 43 (44)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCC
T ss_pred HHHHHHHHHHHHhhhhhhhhcc
Confidence 3445667777787777666654
No 6
>1m93_A Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} SCOP: e.1.1.1
Probab=11.49 E-value=43 Score=19.52 Aligned_cols=29 Identities=14% Similarity=0.022 Sum_probs=16.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHhcCCChhhH
Q 030147 95 EQLTSSPWNNLMFMIYYGVVVEGRPWRDV 123 (182)
Q Consensus 95 dq~~~~P~~~~~f~~~~~~~l~g~s~~~~ 123 (182)
++++++|+.+..-+.....-.+|.+.+|+
T Consensus 14 ~Ni~~SP~Si~~aLaml~~GA~g~T~~ql 42 (55)
T 1m93_A 14 ENVFISPPSISSVLTILYYGANGSTAEQL 42 (55)
T ss_dssp SCEEECHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCEEECHHHHHHHHHHHHhhccchHHHHH
Confidence 36889999876655443211344443333
No 7
>2kua_A BCL-2-like protein 10; BOO, DIVA, apoptosis, BH3-only, membrane, mitochondri nucleus, transmembrane; NMR {Mus musculus}
Probab=11.03 E-value=1.6e+02 Score=21.39 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=14.7
Q ss_pred CcchHHHHHHHHHHhhhh
Q 030147 46 QKLQLRRLLLKVLFGCAY 63 (182)
Q Consensus 46 ~~~d~~R~~~~~~~G~~~ 63 (182)
..++|.|.+.+..+|+.+
T Consensus 88 g~iNWGRIVaLfaF~g~L 105 (170)
T 2kua_A 88 QDFSWSQLVMLLAFAGTL 105 (170)
T ss_dssp SCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 378999999998888754
No 8
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=11.01 E-value=2e+02 Score=18.01 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=20.8
Q ss_pred chHHHHHHHHHHhhhhcchhHHHHHH
Q 030147 48 LQLRRLLLKVLFGCAYLGPFGHFLHL 73 (182)
Q Consensus 48 ~d~~R~~~~~~~G~~~~gp~~~~wy~ 73 (182)
=++.+.++.+..|+++.|-+.+.-+-
T Consensus 32 ~EF~~iak~~~iG~~imG~IGfiIkl 57 (74)
T 1rh5_B 32 DEYLAVAKVTALGISLLGIIGYIIHV 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999999888766553
No 9
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=10.96 E-value=1.5e+02 Score=17.19 Aligned_cols=18 Identities=11% Similarity=0.363 Sum_probs=15.3
Q ss_pred HhcCCChhhHHHHHHhhC
Q 030147 114 VVEGRPWRDVKTKIKKDY 131 (182)
Q Consensus 114 ~l~g~s~~~~~~~~~~~~ 131 (182)
+++|+|.+.+..++++.=
T Consensus 19 VLqgksR~vIirELqrTn 36 (53)
T 2qho_B 19 VLQGKSRSVIIRELQRTN 36 (53)
T ss_dssp HSTTCCHHHHHHHHHHTT
T ss_pred HhcCCcHHHHHHHHHHhC
Confidence 799999999999988753
No 10
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=10.14 E-value=2.3e+02 Score=16.93 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=21.5
Q ss_pred cchHHHHHHHHHHhhhhcchhHHHHHH
Q 030147 47 KLQLRRLLLKVLFGCAYLGPFGHFLHL 73 (182)
Q Consensus 47 ~~d~~R~~~~~~~G~~~~gp~~~~wy~ 73 (182)
.=++.+.++.+..|+++.|-+.+.-+-
T Consensus 27 ~~Ef~~iak~~~iG~~i~G~iGf~Ikl 53 (61)
T 3mp7_B 27 WATYKRAAKITGLGIILIGLIGMLIRI 53 (61)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999988765543
Done!