Query 030147
Match_columns 182
No_of_seqs 159 out of 1068
Neff 7.9
Searched_HMMs 13730
Date Mon Mar 25 14:51:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030147.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030147hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vqca1 a.4.5.78 (A:4-73) F-11 55.0 2 0.00014 24.7 1.0 26 33-58 22-48 (70)
2 d1xrda1 f.3.1.1 (A:1-52) Light 33.5 25 0.0018 19.3 3.4 31 47-77 7-43 (52)
3 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 18.8 37 0.0027 22.6 2.7 30 33-63 68-97 (146)
4 d1khda1 a.46.2.1 (A:12-80) Ant 12.6 1.2E+02 0.0085 16.7 5.2 52 73-127 4-58 (69)
5 d2g7la2 a.121.1.1 (A:87-230) P 11.8 96 0.007 19.4 3.4 47 4-51 6-57 (144)
6 d2elca1 a.46.2.1 (A:1-52) Anth 11.3 1.2E+02 0.0085 15.9 4.6 47 74-123 3-52 (52)
7 d2g7ga2 a.121.1.1 (A:74-205) P 9.5 1.2E+02 0.0084 18.6 3.1 47 4-51 6-57 (132)
8 d2v9va1 a.4.5.35 (A:377-437) C 8.8 1E+02 0.0075 16.4 2.1 22 36-57 5-27 (61)
9 d3ct6a1 c.54.1.2 (A:1-123) PTS 8.7 1.8E+02 0.013 18.2 3.7 32 98-130 88-119 (123)
10 d1l7va_ f.22.1.1 (A:) ABC tran 8.2 1.5E+02 0.011 21.8 3.6 24 21-44 276-299 (324)
No 1
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=54.97 E-value=2 Score=24.66 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=19.4
Q ss_pred HHHHHHHHhHh-cCCcchHHHHHHHHH
Q 030147 33 AISDIVAQKLT-GIQKLQLRRLLLKVL 58 (182)
Q Consensus 33 ~~gD~iaQ~~~-~~~~~d~~R~~~~~~ 58 (182)
.+-|++||.-. ....++..|++++.+
T Consensus 22 ~ledilaqfeis~~~ayniqr~l~~ic 48 (70)
T d2vqca1 22 TLEDILAQFEISVPSAYNIQRALKAIC 48 (70)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccchHhHHHHHHHHHH
Confidence 36799999733 335689999999864
No 2
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=33.47 E-value=25 Score=19.26 Aligned_cols=31 Identities=19% Similarity=0.138 Sum_probs=21.9
Q ss_pred cchHHHHHHHHHHhhhhcchhHHHH------HHHHHh
Q 030147 47 KLQLRRLLLKVLFGCAYLGPFGHFL------HLILDK 77 (182)
Q Consensus 47 ~~d~~R~~~~~~~G~~~~gp~~~~w------y~~L~~ 77 (182)
-+|++|++.-.....+..+-..|+- |++||.
T Consensus 7 ~fDPRr~lva~~~fL~~LAl~IHfiLLSt~rfNWleg 43 (52)
T d1xrda1 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLEG 43 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHhccCccccccC
Confidence 4799999877776666667776764 566663
No 3
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=18.78 E-value=37 Score=22.58 Aligned_cols=30 Identities=17% Similarity=0.093 Sum_probs=20.5
Q ss_pred HHHHHHHHhHhcCCcchHHHHHHHHHHhhhh
Q 030147 33 AISDIVAQKLTGIQKLQLRRLLLKVLFGCAY 63 (182)
Q Consensus 33 ~~gD~iaQ~~~~~~~~d~~R~~~~~~~G~~~ 63 (182)
..+++..+.++ +...+|.|.+.+..+|+.+
T Consensus 68 ~f~~V~~elF~-DG~~NWGRIVaLfaFg~~l 97 (146)
T d1k3ka_ 68 QLGLSMLQVSG-DGNMNWGRALAILTFGSFV 97 (146)
T ss_dssp HHHTHHHHHCS-SCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHHHHHH
Confidence 34455444443 2557999999999998753
No 4
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=12.63 E-value=1.2e+02 Score=16.68 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=34.1
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHhcCCChhhHHHHH
Q 030147 73 LILDKIFKGKKDTSTVAKKVVLEQLT---SSPWNNLMFMIYYGVVVEGRPWRDVKTKI 127 (182)
Q Consensus 73 ~~L~~~~~~~~~~~~~~~Kvl~dq~~---~~P~~~~~f~~~~~~~l~g~s~~~~~~~~ 127 (182)
.+++++..+ .++..-=.+-++|+++ .++..+..|+..+. ..|.+.+|+..-.
T Consensus 4 ~il~kl~~g-~~Ls~ee~~~~~~~i~~g~~~d~qiaafL~al~--~kg~t~dEi~g~~ 58 (69)
T d1khda1 4 PILEKLFKS-QSMTQEESHQLFAAIVRGELEDSQLAAALISMK--MRGERPEEIAGAA 58 (69)
T ss_dssp HHHHHHHTT-CCCCHHHHHHHHHHHTTTCSCHHHHHHHHHHHH--HHCCCHHHHHHHH
T ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HhCCCHHHHHHHH
Confidence 467777766 3444444445556655 67788888887665 7889888776543
No 5
>d2g7la2 a.121.1.1 (A:87-230) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=11.85 E-value=96 Score=19.36 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhhCcHHHHHHHHH-----HHHHHHHHHHHhHhcCCcchHH
Q 030147 4 IAKKGLQQYLIQLQQHPLRTKAITAG-----VLSAISDIVAQKLTGIQKLQLR 51 (182)
Q Consensus 4 ~~~~~~~~Y~~~l~~~Pl~t~~~t~~-----~l~~~gD~iaQ~~~~~~~~d~~ 51 (182)
.++.+...|.+.+.+||-+...+.+. -.....|-+.+.+.+ ..++..
T Consensus 6 ~Lr~~a~~~r~~l~~HP~~~~l~~~~~~~~p~~l~~~e~~l~~L~~-aG~~~~ 57 (144)
T d2g7la2 6 QLRAVLTSYTLVLFAHPQLARSALVARPSGENYLRLVERVLELLAR-SGAPGA 57 (144)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHSCCCSHHHHHHHHHHHHHHHT-TCCCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHhcCCCCcccHHHHHHHHHHHHHH-cCCCHH
Confidence 46778899999999999988876543 234556666666664 345444
No 6
>d2elca1 a.46.2.1 (A:1-52) Anthranilate phosphoribosyltransferase (TrpD) {Thermus thermophilus [TaxId: 274]}
Probab=11.34 E-value=1.2e+02 Score=15.91 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=27.1
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHhcCCChhhH
Q 030147 74 ILDKIFKGKKDTSTVAKKVVLEQLT---SSPWNNLMFMIYYGVVVEGRPWRDV 123 (182)
Q Consensus 74 ~L~~~~~~~~~~~~~~~Kvl~dq~~---~~P~~~~~f~~~~~~~l~g~s~~~~ 123 (182)
.|+++..+ .++..-=.+-+++++. .+|..+..|+..+. ..|.+.+|+
T Consensus 3 ~l~kl~~g-~~Lt~~ea~~~~~~im~G~~~~~qiaafL~al~--~KGeT~~Ei 52 (52)
T d2elca1 3 AVKKAILG-EVLEEEEAYEVMRALMAGEVSPVRAAGLLVALS--LRGERPHEI 52 (52)
T ss_dssp HHHHHHTT-CCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHH--HHCCCHHHH
T ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HcCCCcccC
Confidence 34555554 3433333344444443 67888888887665 677776653
No 7
>d2g7ga2 a.121.1.1 (A:74-205) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=9.47 E-value=1.2e+02 Score=18.56 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhhCcHHHHHHHHH-----HHHHHHHHHHHhHhcCCcchHH
Q 030147 4 IAKKGLQQYLIQLQQHPLRTKAITAG-----VLSAISDIVAQKLTGIQKLQLR 51 (182)
Q Consensus 4 ~~~~~~~~Y~~~l~~~Pl~t~~~t~~-----~l~~~gD~iaQ~~~~~~~~d~~ 51 (182)
.++.+...|.+.+.+||-+...+.+. .....-|-+.+.+.. ..++..
T Consensus 6 ~lr~~a~~~r~~~~~HP~~~~l~~~~~~~~p~~l~~~e~~l~~L~~-aG~~~~ 57 (132)
T d2g7ga2 6 AFSEWARSYRAAFSRHPTAIRLLATETVRDPGSLSVYHSAAAGLRG-AGFPDD 57 (132)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTSCCCCHHHHHHHHHHHHHHHH-HTCCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHhhcCCCCChhHHHHHHHHHHHHHH-CCCCHH
Confidence 46778889999999999888876653 234555666666553 345444
No 8
>d2v9va1 a.4.5.35 (A:377-437) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=8.80 E-value=1e+02 Score=16.41 Aligned_cols=22 Identities=18% Similarity=0.216 Sum_probs=15.0
Q ss_pred HHHHHhHh-cCCcchHHHHHHHH
Q 030147 36 DIVAQKLT-GIQKLQLRRLLLKV 57 (182)
Q Consensus 36 D~iaQ~~~-~~~~~d~~R~~~~~ 57 (182)
.++||.+. .++.+||.....-+
T Consensus 5 kilaqiiqehregldwqeaatra 27 (61)
T d2v9va1 5 KILAQIIQEHREGLDWQEAATRA 27 (61)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHh
Confidence 47889876 45778987655433
No 9
>d3ct6a1 c.54.1.2 (A:1-123) PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM {Lactococcus lactis [TaxId: 1358]}
Probab=8.69 E-value=1.8e+02 Score=18.21 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=25.7
Q ss_pred hhhhHHHHHHHHHHHHHhcCCChhhHHHHHHhh
Q 030147 98 TSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKD 130 (182)
Q Consensus 98 ~~~P~~~~~f~~~~~~~l~g~s~~~~~~~~~~~ 130 (182)
+-+|+.-..+-+... ...|.+.+++.+.+++-
T Consensus 88 i~~p~tegal~Aa~~-a~~g~~leeI~~~~~~~ 119 (123)
T d3ct6a1 88 FNVPLIEGAYTASAL-LEAGATFEAIKEQLEKM 119 (123)
T ss_dssp CCSCHHHHHHHHHHH-HHTTCCHHHHHHHHGGG
T ss_pred EcCchHHHHHHHHHH-HhCCCCHHHHHHHHHHh
Confidence 467777777777777 78999999999998764
No 10
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=8.16 E-value=1.5e+02 Score=21.84 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhc
Q 030147 21 LRTKAITAGVLSAISDIVAQKLTG 44 (182)
Q Consensus 21 l~t~~~t~~~l~~~gD~iaQ~~~~ 44 (182)
+...++.++.+...+|++++.+..
T Consensus 276 lp~s~l~Ga~lll~aD~l~r~i~~ 299 (324)
T d1l7va_ 276 LPGCALAGASALLLADIVARLALA 299 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 556777788888888888887653
Done!