Query 030148
Match_columns 182
No_of_seqs 169 out of 1338
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 09:16:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030148.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030148hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 1.1E-41 2.3E-46 277.4 13.7 160 10-171 2-213 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.9 1.3E-22 2.9E-27 142.1 6.1 86 16-104 2-87 (87)
3 PF03083 MtN3_slv: Sugar efflu 99.6 9.6E-17 2.1E-21 112.3 4.0 85 84-170 3-87 (87)
4 KOG1623 Multitransmembrane pro 99.6 1.7E-15 3.7E-20 123.9 4.0 92 10-104 121-212 (243)
5 COG4095 Uncharacterized conser 99.4 1E-12 2.3E-17 90.9 5.7 84 12-101 3-86 (89)
6 COG4095 Uncharacterized conser 99.2 3.8E-12 8.3E-17 88.1 2.4 83 81-168 5-87 (89)
7 PF04193 PQ-loop: PQ loop repe 98.2 4.9E-06 1.1E-10 54.0 5.2 55 15-74 3-57 (61)
8 TIGR00951 2A43 Lysosomal Cysti 97.3 0.0018 3.9E-08 52.8 8.8 49 15-66 5-53 (220)
9 PF04193 PQ-loop: PQ loop repe 97.1 0.00024 5.3E-09 45.9 1.8 58 81-143 2-59 (61)
10 KOG3211 Predicted endoplasmic 96.0 0.028 6E-07 45.4 6.6 151 14-170 31-227 (230)
11 smart00679 CTNS Repeated motif 95.8 0.012 2.5E-07 32.9 2.8 28 31-58 2-29 (32)
12 TIGR00951 2A43 Lysosomal Cysti 93.6 0.024 5.1E-07 46.3 0.4 51 80-135 3-53 (220)
13 PRK01021 lpxB lipid-A-disaccha 93.6 0.33 7.1E-06 45.2 7.8 61 110-172 163-223 (608)
14 PF07578 LAB_N: Lipid A Biosyn 93.3 0.083 1.8E-06 35.6 2.6 63 85-156 2-67 (72)
15 PF03650 MPC: Uncharacterised 93.2 0.026 5.6E-07 41.7 0.0 62 111-172 39-102 (119)
16 PF03650 MPC: Uncharacterised 92.0 0.022 4.8E-07 42.0 -1.6 60 42-102 39-98 (119)
17 PHA02246 hypothetical protein 91.0 3.5 7.6E-05 32.0 9.4 131 20-155 8-179 (192)
18 KOG1589 Uncharacterized conser 89.9 0.1 2.2E-06 37.9 0.2 59 42-101 43-101 (118)
19 KOG2913 Predicted membrane pro 85.1 2 4.4E-05 36.0 5.2 54 17-72 9-62 (260)
20 PHA02246 hypothetical protein 81.5 5.1 0.00011 31.2 5.7 35 25-59 117-151 (192)
21 KOG1589 Uncharacterized conser 75.7 0.48 1E-05 34.4 -1.4 59 111-169 43-103 (118)
22 PF01034 Syndecan: Syndecan do 75.7 0.98 2.1E-05 29.7 0.2 29 152-180 21-53 (64)
23 COG3952 Predicted membrane pro 73.4 2.2 4.8E-05 30.8 1.6 76 83-167 28-106 (113)
24 PRK01021 lpxB lipid-A-disaccha 67.9 4.3 9.4E-05 38.0 2.6 60 83-151 12-74 (608)
25 KOG3211 Predicted endoplasmic 67.4 5.6 0.00012 32.3 2.8 69 30-100 155-223 (230)
26 KOG2913 Predicted membrane pro 67.4 6.6 0.00014 32.9 3.4 47 18-67 167-213 (260)
27 PF10688 Imp-YgjV: Bacterial i 62.7 7.5 0.00016 30.1 2.7 62 81-159 93-154 (163)
28 PF05602 CLPTM1: Cleft lip and 62.5 25 0.00055 31.4 6.4 87 4-93 278-376 (438)
29 PF07578 LAB_N: Lipid A Biosyn 51.1 19 0.00041 24.3 2.8 52 33-88 14-65 (72)
30 PF15102 TMEM154: TMEM154 prot 50.8 20 0.00043 27.5 3.2 30 142-171 59-88 (146)
31 PF06946 Phage_holin_5: Phage 43.9 11 0.00024 26.6 0.9 62 113-177 32-93 (93)
32 PF10688 Imp-YgjV: Bacterial i 34.9 9.6 0.00021 29.5 -0.7 38 54-94 118-155 (163)
33 KOG2325 Predicted transporter/ 29.9 56 0.0012 29.9 3.2 56 110-165 163-228 (488)
34 PF08693 SKG6: Transmembrane a 29.0 68 0.0015 19.1 2.4 20 150-169 21-40 (40)
35 PF06946 Phage_holin_5: Phage 28.1 1.2E+02 0.0026 21.5 3.9 63 37-102 22-84 (93)
36 PF14184 YrvL: Regulatory prot 24.3 3E+02 0.0066 20.5 6.3 94 2-101 31-126 (132)
37 PF01372 Melittin: Melittin; 21.1 1.5E+02 0.0032 15.7 2.7 16 29-44 9-24 (26)
38 PF05545 FixQ: Cbb3-type cytoc 21.1 70 0.0015 19.3 1.6 30 16-45 6-35 (49)
39 COG3952 Predicted membrane pro 20.8 3E+02 0.0066 20.0 4.9 80 11-97 23-102 (113)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=1.1e-41 Score=277.42 Aligned_cols=160 Identities=47% Similarity=0.847 Sum_probs=152.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCcchhHHHHHHHhhhhhhhhcCcccccCCcEEEEeechhhHHH
Q 030148 10 LTVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQ 89 (182)
Q Consensus 10 ~~~~~~~vg~~a~i~ti~~~~Sp~~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YGl~~l~~~~~~v~~~N~iG~~l~ 89 (182)
.+...+++|..|+++|+++|+||+|+++||+|+||+|+.|..||+++++||.+|+.|| .+.++|..++.+|.+|++++
T Consensus 2 ~~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG--~~~~~d~llitIN~~G~~ie 79 (243)
T KOG1623|consen 2 GNVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYG--LLKVHDYLLITINGIGLVIE 79 (243)
T ss_pred cchHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhh--hhccCceEEEEEehhcHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999 56655899999999999999
Q ss_pred HHHhhhheeeeccccc----------------------------------------------------cceeeecccccc
Q 030148 90 LVYIILFITYTEKDKK----------------------------------------------------NLVIQTKSVEFM 117 (182)
Q Consensus 90 ~~~~~~~~~y~~~~~~----------------------------------------------------~~Vi~tks~~~l 117 (182)
++|+..|+.|+++|+. ++|+||||+|+|
T Consensus 80 ~~Yi~~f~~ya~~k~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~m 159 (243)
T KOG1623|consen 80 TVYISIFLYYAPKKKTVKIVLALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYM 159 (243)
T ss_pred HHHHHHHheecCchheeEeeehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCceeee
Confidence 9999999999999873 999999999999
Q ss_pred chhhHHHHHHhHHHHHHHhhhccCceEEechHHHHHHHHHHhhheEEEeCCCCC
Q 030148 118 PFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYFNYKETSGE 171 (182)
Q Consensus 118 p~~l~~~~~~~~~lW~~YG~l~~d~~i~ipN~ig~~l~~~ql~l~~~y~~~~~~ 171 (182)
|++++++.++++..|++||++++|.|+.+||++|.+++++||.+|++||+++.+
T Consensus 160 Pf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~~y~~~~~~ 213 (243)
T KOG1623|consen 160 PFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYFKYPKTTEK 213 (243)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhhhcCCCccc
Confidence 999999999999999999999999999999999999999999999999988744
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.87 E-value=1.3e-22 Score=142.14 Aligned_cols=86 Identities=26% Similarity=0.626 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCcchhHHHHHHHhhhhhhhhcCcccccCCcEEEEeechhhHHHHHHhhh
Q 030148 16 AVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIIL 95 (182)
Q Consensus 16 ~vg~~a~i~ti~~~~Sp~~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YGl~~l~~~~~~v~~~N~iG~~l~~~~~~~ 95 (182)
++|++|.++++++++||+++++|++|+||++++|+.|++++++||.+|+.|| ++. +|++++.+|++|.+++.+|+.+
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG--~l~-~d~~i~~~N~~g~~~~~~~~~~ 78 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYG--ILI-NDWPIIVPNVFGLVLSIIYLVV 78 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhh--hhc-CCeeEEeeHHHHHHHHHHHHhh
Confidence 4789999999999999999999999999999999999999999999999999 677 5689999999999999999999
Q ss_pred heeeecccc
Q 030148 96 FITYTEKDK 104 (182)
Q Consensus 96 ~~~y~~~~~ 104 (182)
|++|+++|+
T Consensus 79 ~~~y~~~~~ 87 (87)
T PF03083_consen 79 YYIYPSKKK 87 (87)
T ss_pred eEEeCCCCC
Confidence 999998864
No 3
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.65 E-value=9.6e-17 Score=112.31 Aligned_cols=85 Identities=32% Similarity=0.459 Sum_probs=71.1
Q ss_pred hhhHHHHHHhhhheeeeccccccceeeeccccccchhhHHHHHHhHHHHHHHhhhccCceEEechHHHHHHHHHHhhheE
Q 030148 84 IGAAFQLVYIILFITYTEKDKKNLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYF 163 (182)
Q Consensus 84 iG~~l~~~~~~~~~~y~~~~~~~~Vi~tks~~~lp~~l~~~~~~~~~lW~~YG~l~~d~~i~ipN~ig~~l~~~ql~l~~ 163 (182)
+|.+.....+..+.---++ -++++|+|+++++|..+.++.++|+.+|+.||++++|.+++++|.+|.+++.+|+.+|+
T Consensus 3 lg~~~~~~~i~~~~spl~~--i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~~~~~~~ 80 (87)
T PF03083_consen 3 LGILASVSSIIMFLSPLPQ--IRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLSIIYLVVYY 80 (87)
T ss_pred eeHHHHHHHHHHHHHHHHH--HHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHHHHHHhheE
Confidence 4455555545444321111 27799999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCC
Q 030148 164 NYKETSG 170 (182)
Q Consensus 164 ~y~~~~~ 170 (182)
+|+++|+
T Consensus 81 ~y~~~~~ 87 (87)
T PF03083_consen 81 IYPSKKK 87 (87)
T ss_pred EeCCCCC
Confidence 9998874
No 4
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.56 E-value=1.7e-15 Score=123.94 Aligned_cols=92 Identities=21% Similarity=0.416 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCcchhHHHHHHHhhhhhhhhcCcccccCCcEEEEeechhhHHH
Q 030148 10 LTVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQ 89 (182)
Q Consensus 10 ~~~~~~~vg~~a~i~ti~~~~Sp~~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YGl~~l~~~~~~v~~~N~iG~~l~ 89 (182)
++.....+|++|..++++||.||+..+++++|+||+|.+|+....+.++++..|+.|| ++. +|+++..+|.+|.+++
T Consensus 121 ~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYG--lli-~D~~IaipN~iG~~l~ 197 (243)
T KOG1623|consen 121 PERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYG--LLI-KDFFIAIPNVLGFLLG 197 (243)
T ss_pred cceeeeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHH--HHh-cCeEEEcccHHHHHHH
Confidence 3445779999999999999999999999999999999999999999999999999999 577 6799999999999999
Q ss_pred HHHhhhheeeecccc
Q 030148 90 LVYIILFITYTEKDK 104 (182)
Q Consensus 90 ~~~~~~~~~y~~~~~ 104 (182)
..++.+|++|.+++.
T Consensus 198 ~~QL~Ly~~y~~~~~ 212 (243)
T KOG1623|consen 198 LIQLILYFKYPKTTE 212 (243)
T ss_pred HHHHHHhhhcCCCcc
Confidence 999999999877664
No 5
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=1e-12 Score=90.88 Aligned_cols=84 Identities=18% Similarity=0.358 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCcchhHHHHHHHhhhhhhhhcCcccccCCcEEEEeechhhHHHHH
Q 030148 12 VLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLV 91 (182)
Q Consensus 12 ~~~~~vg~~a~i~ti~~~~Sp~~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YGl~~l~~~~~~v~~~N~iG~~l~~~ 91 (182)
...+++|..|.+.+...| +||..+++|+||++++|+.+++.....+.+|+.|| ++. +|.|+...|.++..++..
T Consensus 3 ~~~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliyg--ILi-~~lPii~aN~i~~il~li 76 (89)
T COG4095 3 FFIEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYG--ILI-NDLPIIIANIISFILSLI 76 (89)
T ss_pred chhhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHH--HHH-ccCcchhHHHHHHHHHHH
Confidence 456888999888888765 99999999999999999999999999999999999 788 569999999999999998
Q ss_pred Hhhhheeeec
Q 030148 92 YIILFITYTE 101 (182)
Q Consensus 92 ~~~~~~~y~~ 101 (182)
-+....+|..
T Consensus 77 Il~~kI~~~~ 86 (89)
T COG4095 77 ILFYKIKYIL 86 (89)
T ss_pred HHHHHHHHHH
Confidence 8888776643
No 6
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=3.8e-12 Score=88.10 Aligned_cols=83 Identities=22% Similarity=0.265 Sum_probs=75.8
Q ss_pred eechhhHHHHHHhhhheeeeccccccceeeeccccccchhhHHHHHHhHHHHHHHhhhccCceEEechHHHHHHHHHHhh
Q 030148 81 VNSIGAAFQLVYIILFITYTEKDKKNLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLA 160 (182)
Q Consensus 81 ~N~iG~~l~~~~~~~~~~y~~~~~~~~Vi~tks~~~lp~~l~~~~~~~~~lW~~YG~l~~d~~i~ipN~ig~~l~~~ql~ 160 (182)
...+|.+++...+..|+.+. .+++||||++++++++.+...++.++|++||++++|.++.++|.++..++.+-+.
T Consensus 5 ~~viG~ia~ilttf~flPQ~-----iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~aN~i~~il~liIl~ 79 (89)
T COG4095 5 IEVIGTIAGILTTFAFLPQL-----IKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIISFILSLIILF 79 (89)
T ss_pred hhhHHHHHHHHHHHHHHHHH-----HHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHH
Confidence 45789999999999999665 7799999999999999999999999999999999999999999999999999988
Q ss_pred heEEEeCC
Q 030148 161 LYFNYKET 168 (182)
Q Consensus 161 l~~~y~~~ 168 (182)
...+|..+
T Consensus 80 ~kI~~~~k 87 (89)
T COG4095 80 YKIKYILK 87 (89)
T ss_pred HHHHHHHh
Confidence 88777543
No 7
>PF04193 PQ-loop: PQ loop repeat
Probab=98.16 E-value=4.9e-06 Score=53.98 Aligned_cols=55 Identities=18% Similarity=0.287 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCcchhHHHHHHHhhhhhhhhcCcccccC
Q 030148 15 DAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSAD 74 (182)
Q Consensus 15 ~~vg~~a~i~ti~~~~Sp~~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YGl~~l~~~ 74 (182)
+++|+++.+. ..++.+||+++.+|+||++++|...+...+.+..+|+.|. ++.+.
T Consensus 3 ~~~g~i~~~~---~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~--~~~~~ 57 (61)
T PF04193_consen 3 NILGIISIVL---WIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYS--ILSNY 57 (61)
T ss_pred HHHHHHHHHH---HHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHH--HHhcC
Confidence 3455555554 4456799999999999999999999999999999999999 56644
No 8
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=97.30 E-value=0.0018 Score=52.82 Aligned_cols=49 Identities=16% Similarity=0.037 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCcchhHHHHHHHhhhhhhhh
Q 030148 15 DAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWY 66 (182)
Q Consensus 15 ~~vg~~a~i~ti~~~~Sp~~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~Y 66 (182)
.++|+...+... .+-+||+++.+|+||++++|+..+..-+.+...|..|
T Consensus 5 ~~lG~~~~~~~~---~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 5 QILGWGYVAAWS---ISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHH---HHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 455555544444 4569999999999999999999999999999999999
No 9
>PF04193 PQ-loop: PQ loop repeat
Probab=97.14 E-value=0.00024 Score=45.88 Aligned_cols=58 Identities=22% Similarity=0.317 Sum_probs=49.4
Q ss_pred eechhhHHHHHHhhhheeeeccccccceeeeccccccchhhHHHHHHhHHHHHHHhhhccCce
Q 030148 81 VNSIGAAFQLVYIILFITYTEKDKKNLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPF 143 (182)
Q Consensus 81 ~N~iG~~l~~~~~~~~~~y~~~~~~~~Vi~tks~~~lp~~l~~~~~~~~~lW~~YG~l~~d~~ 143 (182)
.+++|.+........++..- .+.+|+||++++++.+....++++.+|++|.+..++.+
T Consensus 2 ~~~~g~i~~~~~~~~~lPQi-----~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~ 59 (61)
T PF04193_consen 2 SNILGIISIVLWIISFLPQI-----IKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPF 59 (61)
T ss_pred HHHHHHHHHHHHHHHHHhHH-----HHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35678888888888877544 77899999999999999999999999999999987654
No 10
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=95.95 E-value=0.028 Score=45.36 Aligned_cols=151 Identities=15% Similarity=0.119 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCcchhHHHHHHHhhhhhhhhcCcccccCCcEEEEeechhhHHHHHHh
Q 030148 14 KDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYI 93 (182)
Q Consensus 14 ~~~vg~~a~i~ti~~~~Sp~~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YGl~~l~~~~~~v~~~N~iG~~l~~~~~ 93 (182)
...+|+.-...++.. -+||+.+|+..||++++|...+..-++.-..-+.|. .+++-.+.-.-...=+.++.+.+
T Consensus 31 sklLg~~~va~sl~v---KlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~---~~~g~pFss~gE~~fLl~Q~vil 104 (230)
T KOG3211|consen 31 SKLLGLSTVAGSLLV---KLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYS---YTSGYPFSSYGEYPFLLLQAVIL 104 (230)
T ss_pred HhhhhHHHHHHHHHh---hhhHHHHHHhhcccccccHHHHHHHHHHHHheeeeh---hhcCCCchhHHHHHHHHHHHHHH
Confidence 444555555555544 599999999999999999999999999999999998 34343333333333344444444
Q ss_pred hhhee-eecccc---c-----------------------------------------cceeeeccccccchhhHHHHHHh
Q 030148 94 ILFIT-YTEKDK---K-----------------------------------------NLVIQTKSVEFMPFYLSLSTFLM 128 (182)
Q Consensus 94 ~~~~~-y~~~~~---~-----------------------------------------~~Vi~tks~~~lp~~l~~~~~~~ 128 (182)
..+.. |+-+.. + ..-.|+|++..+++..+..++-+
T Consensus 105 i~~if~f~~~~~~~v~~l~~~~~v~~~~~sk~~p~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g 184 (230)
T KOG3211|consen 105 ILCIFHFSGQTVTVVQFLGYIALVVSVLASKALPLWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGG 184 (230)
T ss_pred HHHHHHhccceeehhhHHHHHHHHHHHHHHhhhhHHHHHHHHhcCchhhhHHHHHHHHHHhcccccchhHHHHHHHHhhh
Confidence 33332 221110 0 55578999999999888889888
Q ss_pred HHHHHHHhhhc-cCceEEechHHHHHHHHHHhhheEEEeCCCC
Q 030148 129 STSFLAYGIMN-WDPFIYVPNGIGTILGIVQLALYFNYKETSG 170 (182)
Q Consensus 129 ~~lW~~YG~l~-~d~~i~ipN~ig~~l~~~ql~l~~~y~~~~~ 170 (182)
+.--.+|.+.. +|.-+++.=.+...++..-..-.++|+++.+
T Consensus 185 ~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~~ 227 (230)
T KOG3211|consen 185 CLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWSTAI 227 (230)
T ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhcCC
Confidence 88888998874 6776666666666666555555556665553
No 11
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=95.76 E-value=0.012 Score=32.94 Aligned_cols=28 Identities=36% Similarity=0.301 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHhcCCCCcchhHHHHHHH
Q 030148 31 SPVPTFRRIIRNHSTEEFSGLPYVYALL 58 (182)
Q Consensus 31 Sp~~~~~~i~k~kst~~~s~~p~~~~~~ 58 (182)
+-+||+.+++|+||++++|+..++..+.
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHh
Confidence 5689999999999999999877765443
No 12
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=93.58 E-value=0.024 Score=46.25 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=43.9
Q ss_pred EeechhhHHHHHHhhhheeeeccccccceeeeccccccchhhHHHHHHhHHHHHHH
Q 030148 80 TVNSIGAAFQLVYIILFITYTEKDKKNLVIQTKSVEFMPFYLSLSTFLMSTSFLAY 135 (182)
Q Consensus 80 ~~N~iG~~l~~~~~~~~~~y~~~~~~~~Vi~tks~~~lp~~l~~~~~~~~~lW~~Y 135 (182)
..+.+|.....+....++..- .+.+|+||++++|+.+....+++...|.+|
T Consensus 3 iS~~lG~~~~~~~~~~~~PQi-----~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 3 LSQILGWGYVAAWSISFYPQI-----IKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred hHHHHHHHHHHHHHHHHhhHH-----HHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 456788888888888887544 678899999999999999999999999999
No 13
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=93.56 E-value=0.33 Score=45.24 Aligned_cols=61 Identities=21% Similarity=0.273 Sum_probs=49.9
Q ss_pred eeccccccchhhHHHHHHhHHHHHHHhhhccCceEEechHHHHHHHHHHhhheEEEeCCCCCC
Q 030148 110 QTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYFNYKETSGEE 172 (182)
Q Consensus 110 ~tks~~~lp~~l~~~~~~~~~lW~~YG~l~~d~~i~ipN~ig~~l~~~ql~l~~~y~~~~~~~ 172 (182)
+.+.-+.+|...=..++.++++=++|++..+|.-.++.+..|.+..+-.+.+ +++.+++++
T Consensus 163 e~~~~s~~p~~FW~~s~~G~~~~l~Y~i~r~dpv~i~g~~~g~~~y~rnl~l--i~~~~~~~~ 223 (608)
T PRK01021 163 EYNNQSALPALFWKASLLGGSLALLYFIRTGDPVNILCYGCGLFPSLANLRI--AYKEARRKP 223 (608)
T ss_pred HhcCCCCCcHHHHHHHHHhHHHHHHHHHHhCCceEEEccccchhHHHHHHHH--HHhhccccc
Confidence 4455678899999999999999999999999999999999999988888654 444444433
No 14
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=93.27 E-value=0.083 Score=35.65 Aligned_cols=63 Identities=29% Similarity=0.422 Sum_probs=45.9
Q ss_pred hhHHHHHHh---hhheeeeccccccceeeeccccccchhhHHHHHHhHHHHHHHhhhccCceEEechHHHHHHHH
Q 030148 85 GAAFQLVYI---ILFITYTEKDKKNLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGI 156 (182)
Q Consensus 85 G~~l~~~~~---~~~~~y~~~~~~~~Vi~tks~~~lp~~l~~~~~~~~~lW~~YG~l~~d~~i~ipN~ig~~l~~ 156 (182)
|++.+..+. .+.|.++++++| +.+|..-=..+.+++.+=++||+.++|...++....|.+...
T Consensus 2 G~~gq~lF~~Rf~~QW~~SEk~k~---------sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV~ilgq~~gl~iy~ 67 (72)
T PF07578_consen 2 GFIGQLLFSSRFIVQWIYSEKAKK---------SVVPVAFWYLSLIGSLLLLIYAIIRKDPVFILGQSFGLFIYI 67 (72)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCC---------CCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHhcChHHHH
Confidence 555555555 444555544432 567888888999999999999999999988877777776443
No 15
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=93.18 E-value=0.026 Score=41.70 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=55.4
Q ss_pred eccccccchhhHHHHHHhHHHHHHHhhhc--cCceEEechHHHHHHHHHHhhheEEEeCCCCCC
Q 030148 111 TKSVEFMPFYLSLSTFLMSTSFLAYGIMN--WDPFIYVPNGIGTILGIVQLALYFNYKETSGEE 172 (182)
Q Consensus 111 tks~~~lp~~l~~~~~~~~~lW~~YG~l~--~d~~i~ipN~ig~~l~~~ql~l~~~y~~~~~~~ 172 (182)
+|..|.++..|+.+.+..+++|.=|.+.+ +|..+...|+.-...+..|+.=++.|...++++
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~~~~ 102 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQKKE 102 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Confidence 47899999999999999999999999988 889999999999999999999888887666554
No 16
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=92.04 E-value=0.022 Score=42.04 Aligned_cols=60 Identities=23% Similarity=0.243 Sum_probs=52.4
Q ss_pred hcCCCCcchhHHHHHHHhhhhhhhhcCcccccCCcEEEEeechhhHHHHHHhhhheeeecc
Q 030148 42 NHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFITYTEK 102 (182)
Q Consensus 42 ~kst~~~s~~p~~~~~~n~~lW~~YGl~~l~~~~~~v~~~N~iG~~l~~~~~~~~~~y~~~ 102 (182)
+|..+.+|..+-.+.++.+.+|+.|++ .+.+.++.++.+|.+-...+.+++.=++.|...
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~-~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~ 98 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSL-VITPRNYLLFACNFFNATTQLYQLYRKLNYQYS 98 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHhe-eecCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999996 666777999999999999999999777766543
No 17
>PHA02246 hypothetical protein
Probab=91.04 E-value=3.5 Score=32.03 Aligned_cols=131 Identities=18% Similarity=0.198 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHhcCCCCcchhHHHHHHHhhhhhhhhcCcccccC--CcEEEEeechhhHHHHHHhhhhe
Q 030148 20 AGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSAD--NILVTTVNSIGAAFQLVYIILFI 97 (182)
Q Consensus 20 ~a~i~ti~~~~Sp~~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YGl~~l~~~--~~~v~~~N~iG~~l~~~~~~~~~ 97 (182)
+....++..-..-.|++..+.|.|+++++| -.|+-......+-..|- .+..+ ++-++ .-..-..++...+.+-.
T Consensus 8 ~s~~yailit~gYipgL~slvk~~nv~GvS-~~FWYLi~~tvgiSfyN--lL~T~~~~fqi~-svg~nl~lgivcLlv~~ 83 (192)
T PHA02246 8 LSILYAILITVGYIPGLVALVKAESVKGVS-NYFWYLIVATVGISFYN--LLLTDASVFQIV-SVGLNLTLGIVCLLVAS 83 (192)
T ss_pred HHHHHHHHHHhhhhhhHHHHhhhcccccHH-HHHHHHHHHHHHHHHHH--HHhcCCceEEEe-eeehhhhhhhhheeeeh
Confidence 334444444455689999999999999998 45666666777788888 45533 23332 22223333333332211
Q ss_pred eeecccc--c------------------------------------cceeeeccccccchhhHHHHHHhHHH-HHHHhhh
Q 030148 98 TYTEKDK--K------------------------------------NLVIQTKSVEFMPFYLSLSTFLMSTS-FLAYGIM 138 (182)
Q Consensus 98 ~y~~~~~--~------------------------------------~~Vi~tks~~~lp~~l~~~~~~~~~l-W~~YG~l 138 (182)
|++++- + .+-.|||++|+.+..+.+...++-++ =+..-+-
T Consensus 84 -~rkkd~f~~~fiiifSLllfll~~~~evtQtVat~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~Lt 162 (192)
T PHA02246 84 -YRKKDYFSIPFIIVFSLLLFLLSDFTALTQTVATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVLT 162 (192)
T ss_pred -hhccccccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhhh
Confidence 111110 0 66789999999887665443332222 2222222
Q ss_pred ccCceEEechHHHHHHH
Q 030148 139 NWDPFIYVPNGIGTILG 155 (182)
Q Consensus 139 ~~d~~i~ipN~ig~~l~ 155 (182)
.--.++++...+..++-
T Consensus 163 hv~~hIiiTEf~N~iLi 179 (192)
T PHA02246 163 HTYVHIIATEFVNFVLI 179 (192)
T ss_pred CCcceeeHHHHHHHHHH
Confidence 24456777666665543
No 18
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.92 E-value=0.1 Score=37.88 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=51.9
Q ss_pred hcCCCCcchhHHHHHHHhhhhhhhhcCcccccCCcEEEEeechhhHHHHHHhhhheeeec
Q 030148 42 NHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFITYTE 101 (182)
Q Consensus 42 ~kst~~~s~~p~~~~~~n~~lW~~YGl~~l~~~~~~v~~~N~iG~~l~~~~~~~~~~y~~ 101 (182)
.|..+.+|..-.++.+....+|..|++ .+.+.++.++.+|.+=.+.+.+++.=.+.|..
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySl-VI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~ 101 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSL-VITPKNYSLFSVNFFVAITGIYQLTRIANYQQ 101 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeE-EEeccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999997 66677899999999999999999987777743
No 19
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=85.05 E-value=2 Score=35.96 Aligned_cols=54 Identities=20% Similarity=0.154 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHhcCCCCcchhHHHHHHHhhhhhhhhcCcccc
Q 030148 17 VGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVS 72 (182)
Q Consensus 17 vg~~a~i~ti~~~~Sp~~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YGl~~l~ 72 (182)
-.++|.+.+++-..+=+||+.+..|+|+.+++|+.+.+.-+.....=+.|. .+.
T Consensus 9 s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~--~l~ 62 (260)
T KOG2913|consen 9 STILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGF--FLQ 62 (260)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHH--Hhc
Confidence 344555555555566799999999999999999999998888888888888 455
No 20
>PHA02246 hypothetical protein
Probab=81.52 E-value=5.1 Score=31.15 Aligned_cols=35 Identities=11% Similarity=0.199 Sum_probs=26.8
Q ss_pred HHHHHhccHHHHHHHHHhcCCCCcchhHHHHHHHh
Q 030148 25 AFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLN 59 (182)
Q Consensus 25 ti~~~~Sp~~~~~~i~k~kst~~~s~~p~~~~~~n 59 (182)
++...+.-+||+.+-+|+|++|+.|+..++..-..
T Consensus 117 t~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~G 151 (192)
T PHA02246 117 TITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLG 151 (192)
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHH
Confidence 33344566999999999999999998888654443
No 21
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.67 E-value=0.48 Score=34.42 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=52.4
Q ss_pred eccccccchhhHHHHHHhHHHHHHHhhhc--cCceEEechHHHHHHHHHHhhheEEEeCCC
Q 030148 111 TKSVEFMPFYLSLSTFLMSTSFLAYGIMN--WDPFIYVPNGIGTILGIVQLALYFNYKETS 169 (182)
Q Consensus 111 tks~~~lp~~l~~~~~~~~~lW~~YG~l~--~d~~i~ipN~ig~~l~~~ql~l~~~y~~~~ 169 (182)
.|..|.+|..-+++.+..++.|+=|.+.+ +|+++.--|+.-.+-+..||.=+..|...+
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~~~ 103 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRIANYQQQQ 103 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999987 899999999999999999999988885444
No 22
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=75.65 E-value=0.98 Score=29.72 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=1.6
Q ss_pred HHHHHHHhhheEEEeCCCCCC----CCCCcccc
Q 030148 152 TILGIVQLALYFNYKETSGEE----SRDPLIVS 180 (182)
Q Consensus 152 ~~l~~~ql~l~~~y~~~~~~~----~~~~~~~~ 180 (182)
.++..+-|+++.+|+-++++| .+|||-.+
T Consensus 21 gll~ailLIlf~iyR~rkkdEGSY~l~e~K~s~ 53 (64)
T PF01034_consen 21 GLLFAILLILFLIYRMRKKDEGSYDLDEPKPSN 53 (64)
T ss_dssp ----------------S------SS--S-----
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCccCCCCCccc
Confidence 345667788899999888777 47777544
No 23
>COG3952 Predicted membrane protein [Function unknown]
Probab=73.37 E-value=2.2 Score=30.83 Aligned_cols=76 Identities=20% Similarity=0.258 Sum_probs=56.8
Q ss_pred chhhHHHHHHh---hhheeeeccccccceeeeccccccchhhHHHHHHhHHHHHHHhhhccCceEEechHHHHHHHHHHh
Q 030148 83 SIGAAFQLVYI---ILFITYTEKDKKNLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQL 159 (182)
Q Consensus 83 ~iG~~l~~~~~---~~~~~y~~~~~~~~Vi~tks~~~lp~~l~~~~~~~~~lW~~YG~l~~d~~i~ipN~ig~~l~~~ql 159 (182)
.+|+.-..++. ++.|.|.++ ++.+.+|.+.=-++.+++.+=+.|-+-++|..-++.|+.|+..++..|
T Consensus 28 LiG~~g~~lFt~Rf~VQw~~se~---------a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~l~nL 98 (113)
T COG3952 28 LIGFSGQLLFTGRFVVQWLASEH---------ANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIYLRNL 98 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---------cCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHHHHHH
Confidence 45665555555 344444433 355778999888999999999999999999988899999999888887
Q ss_pred hheEEEeC
Q 030148 160 ALYFNYKE 167 (182)
Q Consensus 160 ~l~~~y~~ 167 (182)
-+...=++
T Consensus 99 ~L~~ker~ 106 (113)
T COG3952 99 WLIIKERR 106 (113)
T ss_pred HHHHHHhc
Confidence 76544333
No 24
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=67.87 E-value=4.3 Score=37.98 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=42.9
Q ss_pred chhhHHHHHHhh---hheeeeccccccceeeeccccccchhhHHHHHHhHHHHHHHhhhccCceEEechHHH
Q 030148 83 SIGAAFQLVYII---LFITYTEKDKKNLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIG 151 (182)
Q Consensus 83 ~iG~~l~~~~~~---~~~~y~~~~~~~~Vi~tks~~~lp~~l~~~~~~~~~lW~~YG~l~~d~~i~ipN~ig 151 (182)
.+|++.+.++.. +.|.++.+++| +.+|...=..+.+++.+=++||++.+|..+++-..+|
T Consensus 12 ~~G~~~q~~F~~rf~~QW~~sek~~~---------s~~p~~FW~~Sl~g~~~l~~y~~~~~~~~~~~~q~~~ 74 (608)
T PRK01021 12 PLGLFANLFFGSAFCIQWFLSKKRKY---------SYVPKIFWILSSIGAVLMICHGFIQSQFPIALLHSFN 74 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC---------ccCchHHHHHHHHHHHHHHHHHHHhcCCcEEEecccc
Confidence 478888888874 34444444322 4568888889999999999999999887776533333
No 25
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=67.43 E-value=5.6 Score=32.34 Aligned_cols=69 Identities=17% Similarity=0.209 Sum_probs=55.4
Q ss_pred hccHHHHHHHHHhcCCCCcchhHHHHHHHhhhhhhhhcCcccccCCcEEEEeechhhHHHHHHhhhheeee
Q 030148 30 VSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFITYT 100 (182)
Q Consensus 30 ~Sp~~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YGl~~l~~~~~~v~~~N~iG~~l~~~~~~~~~~y~ 100 (182)
.|=++|+..=+|+|++|..|.......+..|..=..+. ....+|+.+...-.+..+++..-..-..+|.
T Consensus 155 ~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARifts--iq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~ 223 (230)
T KOG3211|consen 155 VSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTS--IQETGDFLMLLRFVISLALNGLITAQVLRYW 223 (230)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHH--HHhcCChhhHHHHHHHHHHhHHHHHHHHHHH
Confidence 56688899999999999999999999999999999999 6777888887766677776655554444443
No 26
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=67.40 E-value=6.6 Score=32.90 Aligned_cols=47 Identities=23% Similarity=0.209 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcCCCCcchhHHHHHHHhhhhhhhhc
Q 030148 18 GIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYG 67 (182)
Q Consensus 18 g~~a~i~ti~~~~Sp~~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG 67 (182)
-++|.+.+++-..+.+||+..-+|+|+++++++..|..... .=..|+
T Consensus 167 ~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~---~n~~y~ 213 (260)
T KOG2913|consen 167 AILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSL---GNTTYI 213 (260)
T ss_pred HHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHc---cccccc
Confidence 34666777777889999999999999999999866654443 334566
No 27
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=62.70 E-value=7.5 Score=30.10 Aligned_cols=62 Identities=10% Similarity=0.056 Sum_probs=43.8
Q ss_pred eechhhHHHHHHhhhheeeeccccccceeeeccccccchhhHHHHHHhHHHHHHHhhhccCceEEechHHHHHHHHHHh
Q 030148 81 VNSIGAAFQLVYIILFITYTEKDKKNLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQL 159 (182)
Q Consensus 81 ~N~iG~~l~~~~~~~~~~y~~~~~~~~Vi~tks~~~lp~~l~~~~~~~~~lW~~YG~l~~d~~i~ipN~ig~~l~~~ql 159 (182)
...++.+.+..++..-+... + ..|=+..++++.+|.+|++++++++..+-|....+.....+
T Consensus 93 ~~~l~~~as~~~t~a~f~~~---------------~--~~mR~~~l~~~~~w~~~n~~igS~~g~l~e~~~~~~n~~~i 154 (163)
T PF10688_consen 93 IELLPYAASVLGTIALFMLD---------------G--IKMRILMLVGTLCWLIYNILIGSWGGTLMEALFIISNLITI 154 (163)
T ss_pred HHHHHHHHHHHHHHHHHhcC---------------c--hhHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 35666666666665544211 1 22335688999999999999999999988888887666553
No 28
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=62.50 E-value=25 Score=31.42 Aligned_cols=87 Identities=11% Similarity=0.111 Sum_probs=63.5
Q ss_pred eecccChHHHHHHH-----------HHHHHHHHHHHHhccHHHHHHHHHhcCCCCcchhHHHHHHHhhhhhhhhcCcccc
Q 030148 4 TITYQALTVLKDAV-----------GIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVS 72 (182)
Q Consensus 4 ~~~~~~~~~~~~~v-----------g~~a~i~ti~~~~Sp~~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YGl~~l~ 72 (182)
|.+..+-|+++.++ -+++.+-++.=|++-=.++.-++++||.+++|....+.-+++..+=++|= +.
T Consensus 278 g~~~~~~d~~K~~~~etn~~lL~~t~~vs~lH~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL---~D 354 (438)
T PF05602_consen 278 GFSEKDIDEIKRIFLETNPYLLALTFVVSLLHSVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYL---LD 354 (438)
T ss_pred CCCcccHHHHHHHHhcCCHhhhHHHHHHHHHHHHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeE---Ee
Confidence 44555555555544 23445555666777788889999999999999998888888888888887 34
Q ss_pred -cCCcEEEEeechhhHHHHHHh
Q 030148 73 -ADNILVTTVNSIGAAFQLVYI 93 (182)
Q Consensus 73 -~~~~~v~~~N~iG~~l~~~~~ 93 (182)
+..+.|.+++++|+++.++=+
T Consensus 355 ~~ts~lil~~~gig~~ie~WKv 376 (438)
T PF05602_consen 355 NETSWLILVPSGIGLLIEAWKV 376 (438)
T ss_pred CCCcEEeehHhHhHHhHhheee
Confidence 235888899999998877544
No 29
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=51.05 E-value=19 Score=24.27 Aligned_cols=52 Identities=10% Similarity=0.172 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCCCcchhHHHHHHHhhhhhhhhcCcccccCCcEEEEeechhhHH
Q 030148 33 VPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAF 88 (182)
Q Consensus 33 ~~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YGl~~l~~~~~~v~~~N~iG~~l 88 (182)
+-|-..-.|+|. ..+|..-....++.+.+=+.|| +.. +|+..+....+|.+.
T Consensus 14 ~~QW~~SEk~k~-sv~P~~FW~lSl~Gs~lll~Y~--i~r-~DpV~ilgq~~gl~i 65 (72)
T PF07578_consen 14 IVQWIYSEKAKK-SVVPVAFWYLSLIGSLLLLIYA--IIR-KDPVFILGQSFGLFI 65 (72)
T ss_pred HHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHH--HHH-cChHHHHHHhcChHH
Confidence 334444444443 3345555568899999999999 666 557555555555543
No 30
>PF15102 TMEM154: TMEM154 protein family
Probab=50.79 E-value=20 Score=27.45 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=20.1
Q ss_pred ceEEechHHHHHHHHHHhhheEEEeCCCCC
Q 030148 142 PFIYVPNGIGTILGIVQLALYFNYKETSGE 171 (182)
Q Consensus 142 ~~i~ipN~ig~~l~~~ql~l~~~y~~~~~~ 171 (182)
+.|+||-++++++-+.-..+..+|+|++.|
T Consensus 59 LmIlIP~VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 59 LMILIPLVLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred EEEeHHHHHHHHHHHHHHHheeEEeecccC
Confidence 356788777766666667777777666553
No 31
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=43.94 E-value=11 Score=26.59 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=39.3
Q ss_pred cccccchhhHHHHHHhHHHHHHHhhhccCceEEechHHHHHHHHHHhhheEEEeCCCCCCCCCCc
Q 030148 113 SVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYFNYKETSGEESRDPL 177 (182)
Q Consensus 113 s~~~lp~~l~~~~~~~~~lW~~YG~l~~d~~i~ipN~ig~~l~~~ql~l~~~y~~~~~~~~~~~~ 177 (182)
+.+.+|+--.+.+.+.+ .++..+.+|.-+..-=..|.+.++.--.|+=.+.+++++++||+|
T Consensus 32 ~~K~iPlIs~viGilLG---~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~~~~e~~~ 93 (93)
T PF06946_consen 32 PNKWIPLISVVIGILLG---AAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSKKYGEDDK 93 (93)
T ss_pred CcchhhHHHHHHHHHHH---HHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhhhcCcCCC
Confidence 34567755444443333 455556655544333355888888877787778888888888886
No 32
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=34.88 E-value=9.6 Score=29.50 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=28.1
Q ss_pred HHHHHhhhhhhhhcCcccccCCcEEEEeechhhHHHHHHhh
Q 030148 54 VYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYII 94 (182)
Q Consensus 54 ~~~~~n~~lW~~YGl~~l~~~~~~v~~~N~iG~~l~~~~~~ 94 (182)
+..+.++.+|+.|+ ++.+ +++....|........+.+.
T Consensus 118 ~~~l~~~~~w~~~n--~~ig-S~~g~l~e~~~~~~n~~~i~ 155 (163)
T PF10688_consen 118 ILMLVGTLCWLIYN--ILIG-SWGGTLMEALFIISNLITIY 155 (163)
T ss_pred HHHHHHHHHHHHHH--HHHc-CHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999 6774 47777777776666665443
No 33
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=29.86 E-value=56 Score=29.92 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=35.5
Q ss_pred eeccccccchhhHHHHHHhHHHHHHHhhhccCceEEec----------hHHHHHHHHHHhhheEEE
Q 030148 110 QTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVP----------NGIGTILGIVQLALYFNY 165 (182)
Q Consensus 110 ~tks~~~lp~~l~~~~~~~~~lW~~YG~l~~d~~i~ip----------N~ig~~l~~~ql~l~~~y 165 (182)
|.|..+.......++..++-.+=.+++-+-++-+.+.| ..+.+++.++-+++...+
T Consensus 163 R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~ 228 (488)
T KOG2325|consen 163 RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFF 228 (488)
T ss_pred hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhh
Confidence 34445555666677777777777788888777777766 345555555555544444
No 34
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=29.02 E-value=68 Score=19.06 Aligned_cols=20 Identities=25% Similarity=0.600 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhheEEEeCCC
Q 030148 150 IGTILGIVQLALYFNYKETS 169 (182)
Q Consensus 150 ig~~l~~~ql~l~~~y~~~~ 169 (182)
+|.+.-..-+.+++.|+|++
T Consensus 21 V~vI~~vl~~~l~~~~rR~k 40 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRRKK 40 (40)
T ss_pred hHHHHHHHHHHhheEEeccC
Confidence 45555556666777787764
No 35
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=28.14 E-value=1.2e+02 Score=21.47 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=41.6
Q ss_pred HHHHHhcCCCCcchhHHHHHHHhhhhhhhhcCcccccCCcEEEEeechhhHHHHHHhhhheeeecc
Q 030148 37 RRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFITYTEK 102 (182)
Q Consensus 37 ~~i~k~kst~~~s~~p~~~~~~n~~lW~~YGl~~l~~~~~~v~~~N~iG~~l~~~~~~~~~~y~~~ 102 (182)
.+.+|+-..-+-...|.+...+...+=+.+. ++.++ ..+...-..|.+.++.-+.++=.++++
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~--~~~~~-~~l~~~~~aG~laGlAaTGL~e~~t~r 84 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAY--PLTGD-GNLALMAWAGGLAGLAATGLFEQFTNR 84 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhh--hcCCC-ccHHHHHHHHHHhhhhhhhHHHHHHhh
Confidence 3444432223448899999999999988888 56643 433333345888888888887666654
No 36
>PF14184 YrvL: Regulatory protein YrvL
Probab=24.31 E-value=3e+02 Score=20.47 Aligned_cols=94 Identities=13% Similarity=0.048 Sum_probs=46.6
Q ss_pred eeeecccChHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHhc-CCCCcchhHHHHHHHhhhhhhhhcCcccccCCcEEE
Q 030148 2 ILTITYQALTVLKDAVGIAGNIFAFGLFVSPVPT-FRRIIRNH-STEEFSGLPYVYALLNCLITMWYGTPLVSADNILVT 79 (182)
Q Consensus 2 ~~~~~~~~~~~~~~~vg~~a~i~ti~~~~Sp~~~-~~~i~k~k-st~~~s~~p~~~~~~n~~lW~~YGl~~l~~~~~~v~ 79 (182)
++|++++|.............+ +..+-|+.. +.+..++. ........-+...-.-+..|..|=.+... ..|.
T Consensus 31 L~Gi~Y~S~~~llLF~li~~~l---g~~~e~~~k~l~~~l~~~~~~~~~~~~l~~~id~~~t~~~i~~aD~~m---~sI~ 104 (132)
T PF14184_consen 31 LLGIEYESVGSLLLFFLIIFVL---GLPFELFEKVLLKALLFLRMSRRLFILLAFIIDFLFTWITIYTADELM---ESIS 104 (132)
T ss_pred HhCcccccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHh---ccee
Confidence 4678888776666555554444 333333333 33444443 23333333333334455555555522222 2366
Q ss_pred EeechhhHHHHHHhhhheeeec
Q 030148 80 TVNSIGAAFQLVYIILFITYTE 101 (182)
Q Consensus 80 ~~N~iG~~l~~~~~~~~~~y~~ 101 (182)
.+|.-..+.+......-....+
T Consensus 105 is~~~e~i~al~~~~~~~~~~~ 126 (132)
T PF14184_consen 105 ISTLSEIIFALLFALLDKCFDK 126 (132)
T ss_pred eCcHHHHHHHHHHHHHHHHhcc
Confidence 7777777766665555444333
No 37
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=21.14 E-value=1.5e+02 Score=15.74 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=12.5
Q ss_pred HhccHHHHHHHHHhcC
Q 030148 29 FVSPVPTFRRIIRNHS 44 (182)
Q Consensus 29 ~~Sp~~~~~~i~k~ks 44 (182)
..+.+|++..++|+|.
T Consensus 9 la~~LP~lISWIK~kr 24 (26)
T PF01372_consen 9 LATGLPTLISWIKNKR 24 (26)
T ss_dssp HHTHHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHh
Confidence 3556899999999874
No 38
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=21.09 E-value=70 Score=19.32 Aligned_cols=30 Identities=20% Similarity=0.102 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHhcCC
Q 030148 16 AVGIAGNIFAFGLFVSPVPTFRRIIRNHST 45 (182)
Q Consensus 16 ~vg~~a~i~ti~~~~Sp~~~~~~i~k~kst 45 (182)
+.+..-.+.++.++..-+-.+.-..+.|+.
T Consensus 6 ~~~~~~~~~~v~~~~~F~gi~~w~~~~~~k 35 (49)
T PF05545_consen 6 LQGFARSIGTVLFFVFFIGIVIWAYRPRNK 35 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 334444444444444445555555555443
No 39
>COG3952 Predicted membrane protein [Function unknown]
Probab=20.82 E-value=3e+02 Score=19.98 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCcchhHHHHHHHhhhhhhhhcCcccccCCcEEEEeechhhHHHH
Q 030148 11 TVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQL 90 (182)
Q Consensus 11 ~~~~~~vg~~a~i~ti~~~~Sp~~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YGl~~l~~~~~~v~~~N~iG~~l~~ 90 (182)
......+|..|-.+-.+-| +-|.. ..++++...++..-.-++++...+=+.|- +-++ |.--+..|+.|++.++
T Consensus 23 ~l~W~LiG~~g~~lFt~Rf---~VQw~-~se~a~rsv~P~~FW~~sllGg~l~L~Yf--i~~~-DpV~Vl~~~~glF~~l 95 (113)
T COG3952 23 FLSWKLIGFSGQLLFTGRF---VVQWL-ASEHANRSVIPVLFWYFSLLGGLLLLSYF--IRRQ-DPVFVLGQACGLFIYL 95 (113)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHH-HHHhcCCCcchHHHHHHHHHhhHHHHHHH--HHhc-chHHHHHHhhhHHHHH
Confidence 3356667777665443332 12221 23344455555555558899999999999 5554 4544567777777777
Q ss_pred HHhhhhe
Q 030148 91 VYIILFI 97 (182)
Q Consensus 91 ~~~~~~~ 97 (182)
.-+.+..
T Consensus 96 ~nL~L~~ 102 (113)
T COG3952 96 RNLWLII 102 (113)
T ss_pred HHHHHHH
Confidence 6665554
Done!