Query 030148
Match_columns 182
No_of_seqs 169 out of 1338
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 14:52:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nr1_A NR1 M2, M2; receptor, s 21.1 37 0.0013 17.6 1.0 14 127-140 9-22 (27)
2 1pi7_A VPU protein, U ORF prot 10.6 2.5E+02 0.0084 15.4 4.2 29 15-43 7-36 (36)
3 3bkd_A Transmembrane domain of 9.2 43 0.0015 17.0 -0.8 14 140-153 2-15 (26)
4 2b2h_A AMT-1, ammonium transpo 6.6 2E+02 0.0068 24.4 1.8 32 108-139 30-61 (399)
5 2l6w_A Beta-type platelet-deri 8.0 1.3E+02 0.0043 17.0 0.0 18 154-171 21-38 (39)
6 3l1l_A Arginine/agmatine antip 5.7 3.2E+02 0.011 22.2 2.5 22 150-171 412-433 (445)
7 3dad_A FH1/FH2 domain-containi 5.7 3.3E+02 0.011 22.6 2.5 31 32-62 255-285 (339)
8 1u7g_A Probable ammonium trans 5.5 1.9E+02 0.0066 24.3 1.0 33 107-139 34-66 (385)
9 2k9p_A Pheromone alpha factor 5.1 2.2E+02 0.0074 18.5 0.8 35 129-165 37-71 (80)
10 2klu_A T-cell surface glycopro 4.6 2E+02 0.0067 18.2 0.3 25 140-165 5-29 (70)
No 1
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=21.11 E-value=37 Score=17.59 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=10.7
Q ss_pred HhHHHHHHHhhhcc
Q 030148 127 LMSTSFLAYGIMNW 140 (182)
Q Consensus 127 ~~~~lW~~YG~l~~ 140 (182)
+.+.+|+.+|.+.+
T Consensus 9 l~aa~wF~WGvlln 22 (27)
T 2nr1_A 9 LSSAMWFSWGVLLN 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhhee
Confidence 56778999998753
No 2
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=10.56 E-value=2.5e+02 Score=15.40 Aligned_cols=29 Identities=14% Similarity=0.068 Sum_probs=15.9
Q ss_pred HHHHH-HHHHHHHHHHhccHHHHHHHHHhc
Q 030148 15 DAVGI-AGNIFAFGLFVSPVPTFRRIIRNH 43 (182)
Q Consensus 15 ~~vg~-~a~i~ti~~~~Sp~~~~~~i~k~k 43 (182)
.+++. .+.+.++....-=+-..+++.|+|
T Consensus 7 ~ivalivalIiaIVVWtiv~ieYrk~~kQ~ 36 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWSIVIIEGRGGKKKK 36 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34433 555666655544455666666654
No 3
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=9.19 E-value=43 Score=17.01 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=10.3
Q ss_pred cCceEEechHHHHH
Q 030148 140 WDPFIYVPNGIGTI 153 (182)
Q Consensus 140 ~d~~i~ipN~ig~~ 153 (182)
+|..+..+|.+|.+
T Consensus 2 sDplv~aa~iiGil 15 (26)
T 3bkd_A 2 SDPLVVAASIMGIL 15 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHH
Confidence 56777788888863
No 4
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=6.62 E-value=2e+02 Score=24.37 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=23.7
Q ss_pred eeeeccccccchhhHHHHHHhHHHHHHHhhhc
Q 030148 108 VIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMN 139 (182)
Q Consensus 108 Vi~tks~~~lp~~l~~~~~~~~~lW~~YG~l~ 139 (182)
..|+||+-++=..-.....+.+..|.++|+-.
T Consensus 30 ~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~l 61 (399)
T 2b2h_A 30 MVRRKNAVNMIALSFISLIITVLLWIFYGYSV 61 (399)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred cccHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777887766666667788899999887753
No 5
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=8.01 E-value=1.3e+02 Score=17.00 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=10.4
Q ss_pred HHHHHhhheEEEeCCCCC
Q 030148 154 LGIVQLALYFNYKETSGE 171 (182)
Q Consensus 154 l~~~ql~l~~~y~~~~~~ 171 (182)
....-+++..+|.++++.
T Consensus 21 ~iisLIiLi~~w~qKPrY 38 (39)
T 2l6w_A 21 TIISLIILIMLWQKKPRY 38 (39)
Confidence 334445566677766654
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=5.72 E-value=3.2e+02 Score=22.17 Aligned_cols=22 Identities=14% Similarity=-0.011 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhheEEEeCCCCC
Q 030148 150 IGTILGIVQLALYFNYKETSGE 171 (182)
Q Consensus 150 ig~~l~~~ql~l~~~y~~~~~~ 171 (182)
.|.+.-..-+.+|..+++++++
T Consensus 412 ~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 412 WSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHhhhccc
Confidence 3444445555566655555443
No 7
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=5.70 E-value=3.3e+02 Score=22.57 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=24.9
Q ss_pred cHHHHHHHHHhcCCCCcchhHHHHHHHhhhh
Q 030148 32 PVPTFRRIIRNHSTEEFSGLPYVYALLNCLI 62 (182)
Q Consensus 32 p~~~~~~i~k~kst~~~s~~p~~~~~~n~~l 62 (182)
|+..+.++.++|+.++.-...+.++++|+.+
T Consensus 255 p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL 285 (339)
T 3dad_A 255 PWANLVSILEEKNGADPELLVYTVTLINKTL 285 (339)
T ss_dssp TTHHHHHHHTTTTSCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 4777778888888888888888888888764
No 8
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=5.51 E-value=1.9e+02 Score=24.32 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=24.1
Q ss_pred ceeeeccccccchhhHHHHHHhHHHHHHHhhhc
Q 030148 107 LVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMN 139 (182)
Q Consensus 107 ~Vi~tks~~~lp~~l~~~~~~~~~lW~~YG~l~ 139 (182)
-..|+||+-++=..-.....+.+..|.++|+-.
T Consensus 34 G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~l 66 (385)
T 1u7g_A 34 GLIRGKNVLSMLTQVTVTFALVCILWVVYGYSL 66 (385)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred ccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777887766666667788899999887753
No 9
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=5.09 E-value=2.2e+02 Score=18.49 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=24.7
Q ss_pred HHHHHHHhhhccCceEEechHHHHHHHHHHhhheEEE
Q 030148 129 STSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYFNY 165 (182)
Q Consensus 129 ~~lW~~YG~l~~d~~i~ipN~ig~~l~~~ql~l~~~y 165 (182)
-.+|.+.- .+-.++.+-|.+.+++..+...++..|
T Consensus 37 iil~lltk--krrspiF~lN~~~L~l~iirs~l~~~y 71 (80)
T 2k9p_A 37 IVVWITSR--SRKTPIFIINQVSLFLIILHSALYFKY 71 (80)
T ss_dssp HHHHHHTC--CSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc--cccChhhHHHHHHHHHHHHHHHHHHHH
Confidence 44565554 455667777888888888888877665
No 10
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=4.58 E-value=2e+02 Score=18.23 Aligned_cols=25 Identities=8% Similarity=0.002 Sum_probs=12.4
Q ss_pred cCceEEechHHHHHHHHHHhhheEEE
Q 030148 140 WDPFIYVPNGIGTILGIVQLALYFNY 165 (182)
Q Consensus 140 ~d~~i~ipN~ig~~l~~~ql~l~~~y 165 (182)
..++.++ -++|.+.++.-++-+.+|
T Consensus 5 ~~~p~~L-ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 5 PRGSMAL-IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp CCCSSHH-HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHH-HHHhHHHHHHHHHHHHHH
Confidence 3344433 356666665555544444
Done!