Query 030148
Match_columns 182
No_of_seqs 169 out of 1338
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 14:53:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030148.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030148hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 19.9 60 0.0044 16.7 4.2 34 8-49 1-34 (37)
2 d2croa_ a.35.1.2 (A:) cro 434 11.0 1.3E+02 0.0096 16.3 3.9 35 32-67 29-64 (65)
3 d1fftb2 f.17.2.1 (B:27-117) Cy 9.9 29 0.0021 21.4 0.0 22 156-177 34-55 (91)
4 d1rkla_ f.23.30.1 (A:) Oligosa 9.7 35 0.0026 17.2 0.3 19 148-166 8-26 (36)
5 d2axtm1 f.23.35.1 (M:1-36) Pho 8.6 76 0.0055 16.1 1.4 13 81-93 3-15 (36)
6 d1ppjc1 f.32.1.1 (C:261-379) M 7.6 1.1E+02 0.0082 19.6 2.3 40 3-42 75-115 (119)
7 d3cx5c1 f.32.1.1 (C:262-385) M 6.0 1.5E+02 0.011 19.0 2.3 40 3-42 75-115 (124)
8 d2axti1 f.23.37.1 (I:1-35) Pho 5.2 1.2E+02 0.0086 15.2 1.0 11 132-142 18-28 (35)
9 d1jfia_ a.22.1.3 (A:) Negative 5.0 2.9E+02 0.021 15.1 3.9 33 32-64 4-37 (66)
10 d1ku5a_ a.22.1.2 (A:) Archaeal 4.6 3E+02 0.022 14.9 4.1 33 32-64 4-36 (66)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=19.91 E-value=60 Score=16.73 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=21.2
Q ss_pred cChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCcc
Q 030148 8 QALTVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFS 49 (182)
Q Consensus 8 ~~~~~~~~~vg~~a~i~ti~~~~Sp~~~~~~i~k~kst~~~s 49 (182)
|++..+. |.++...++. +.++.-+.|+|..+.+.
T Consensus 1 Q~p~Rv~---gl~~F~~~v~-----laQi~lVlKKKQ~EkVQ 34 (37)
T d1vf5c3 1 QDPNRVK---WMIAFICLVM-----LAQLMLILKKKQVEKVQ 34 (37)
T ss_dssp CCHHHHH---HHHHHHHHHH-----HHHHHHHHHTGGGCTTG
T ss_pred CChHHHH---HHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 4444444 4444444443 56778899999888764
No 2
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=11.01 E-value=1.3e+02 Score=16.31 Aligned_cols=35 Identities=14% Similarity=0.021 Sum_probs=20.4
Q ss_pred cHHHHHHHHHhcCCCCcchhHHHHHHH-hhhhhhhhc
Q 030148 32 PVPTFRRIIRNHSTEEFSGLPYVYALL-NCLITMWYG 67 (182)
Q Consensus 32 p~~~~~~i~k~kst~~~s~~p~~~~~~-n~~lW~~YG 67 (182)
.-.++.++.+.++.-. ..+.-++-.+ ...-|+++|
T Consensus 29 s~~ti~~~E~g~~~~~-~~l~~ia~~l~v~~~~Ll~G 64 (65)
T d2croa_ 29 KQQSIQLIEAGVTKRP-RFLFEIAMALNCDPVWLQYG 64 (65)
T ss_dssp CHHHHHHHHTTCCSSC-TTHHHHHHHTTSCHHHHHHC
T ss_pred CHhHHHHHHCCCCCCH-HHHHHHHHHhCCCHHHHhhC
Confidence 4667778877666433 3333333333 345688887
No 3
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=9.90 E-value=29 Score=21.37 Aligned_cols=22 Identities=9% Similarity=0.434 Sum_probs=11.2
Q ss_pred HHHhhheEEEeCCCCCCCCCCc
Q 030148 156 IVQLALYFNYKETSGEESRDPL 177 (182)
Q Consensus 156 ~~ql~l~~~y~~~~~~~~~~~~ 177 (182)
..-+...++|++++.++..+|+
T Consensus 34 ~~~~~~~~ryR~~~~~~~~~~~ 55 (91)
T d1fftb2 34 LMAVGFAWKYRASNKDAKYSPN 55 (91)
T ss_dssp HHHHTTTTTTTTSTTTCSSCCC
T ss_pred HHHHhhheeeeccCCccCCCCc
Confidence 3334444567666655443443
No 4
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.68 E-value=35 Score=17.21 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHhhheEEEe
Q 030148 148 NGIGTILGIVQLALYFNYK 166 (182)
Q Consensus 148 N~ig~~l~~~ql~l~~~y~ 166 (182)
|.+...++...+.+..+|.
T Consensus 8 n~~~i~fgi~mmtliviyh 26 (36)
T d1rkla_ 8 NSLAITFGIVMMTLIVIYH 26 (36)
T ss_dssp GHHHHHHHHHHHHHHHHHH
T ss_pred CcEEeehhHHHHHHHHHHh
Confidence 8888889999998888885
No 5
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.59 E-value=76 Score=16.12 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=9.2
Q ss_pred eechhhHHHHHHh
Q 030148 81 VNSIGAAFQLVYI 93 (182)
Q Consensus 81 ~N~iG~~l~~~~~ 93 (182)
+|..|+++...++
T Consensus 3 vN~Lg~iAt~LFi 15 (36)
T d2axtm1 3 VNQLGLIATALFV 15 (36)
T ss_dssp CCTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 5778887776655
No 6
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.63 E-value=1.1e+02 Score=19.59 Aligned_cols=40 Identities=23% Similarity=0.192 Sum_probs=27.7
Q ss_pred eeecc-cChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHh
Q 030148 3 LTITY-QALTVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRN 42 (182)
Q Consensus 3 ~~~~~-~~~~~~~~~vg~~a~i~ti~~~~Sp~~~~~~i~k~ 42 (182)
||..+ |+.|.--..+|.++++.-.+.++--+|...++.|+
T Consensus 75 L~wlG~~p~e~p~~~~gqi~tv~YF~~flillP~~~~~E~~ 115 (119)
T d1ppjc1 75 LTWIGGQPVEHPYITIGQLASVLYFLLILVLMPTAGTIENK 115 (119)
T ss_dssp HHHHHTSCSCTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45333 66777778888888888877766556666666654
No 7
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.01 E-value=1.5e+02 Score=18.97 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=28.0
Q ss_pred eeecc-cChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHh
Q 030148 3 LTITY-QALTVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRN 42 (182)
Q Consensus 3 ~~~~~-~~~~~~~~~vg~~a~i~ti~~~~Sp~~~~~~i~k~ 42 (182)
||..+ |..|.--..+|.++++.-.+.|+--+|-+.++.|+
T Consensus 75 LtwlG~~p~e~p~~~~gqi~s~~YF~~Fli~~Pl~s~~e~~ 115 (124)
T d3cx5c1 75 LGQIGACHVEVPYVLMGQIATFIYFAYFLIIVPVISTIENV 115 (124)
T ss_dssp HHHHHTSCSCTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 66777788888888888888876666666666554
No 8
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.22 E-value=1.2e+02 Score=15.21 Aligned_cols=11 Identities=27% Similarity=0.872 Sum_probs=8.4
Q ss_pred HHHHhhhccCc
Q 030148 132 FLAYGIMNWDP 142 (182)
Q Consensus 132 W~~YG~l~~d~ 142 (182)
-+++|++.+|.
T Consensus 18 lFiFGFLSnDP 28 (35)
T d2axti1 18 LFVFGFLSGDP 28 (35)
T ss_dssp HHHHHHHTTCT
T ss_pred HHHHhhccCCC
Confidence 35889988885
No 9
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.97 E-value=2.9e+02 Score=15.06 Aligned_cols=33 Identities=9% Similarity=0.152 Sum_probs=19.6
Q ss_pred cHHHHHHHHH-hcCCCCcchhHHHHHHHhhhhhh
Q 030148 32 PVPTFRRIIR-NHSTEEFSGLPYVYALLNCLITM 64 (182)
Q Consensus 32 p~~~~~~i~k-~kst~~~s~~p~~~~~~n~~lW~ 64 (182)
|+.-+++|.| ..+.+.+|--......-.+-+++
T Consensus 4 P~srVkkimk~~~~~~~is~~A~~~~~~a~E~Fi 37 (66)
T d1jfia_ 4 PPARIKKIMQTDEEIGKVAAAVPVIISRALELFL 37 (66)
T ss_dssp CHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhcCCccccccHHHHHHHHHHHHHHH
Confidence 8888999999 55555555444444433333333
No 10
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
Probab=4.62 E-value=3e+02 Score=14.87 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=21.3
Q ss_pred cHHHHHHHHHhcCCCCcchhHHHHHHHhhhhhh
Q 030148 32 PVPTFRRIIRNHSTEEFSGLPYVYALLNCLITM 64 (182)
Q Consensus 32 p~~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~ 64 (182)
|...+++|.|+.....++--.+...--.+-.++
T Consensus 4 P~a~I~rI~k~~~~~ris~ea~~~l~~a~e~Fi 36 (66)
T d1ku5a_ 4 PIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYA 36 (66)
T ss_dssp CHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCcccccHHHHHHHHHHHHHHHH
Confidence 788899999987666666555544444444433
Done!