BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030149
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 244 bits (624), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 112/179 (62%), Positives = 141/179 (78%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG+ F +LFS LF KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 4 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 63
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
I F VWD+GGQ IRP WR YF NTQ +I+VVDS+D +R+V A+DE H +L E+ELR AV
Sbjct: 64 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 123
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+L+FANKQDLP A++ A +T+ L LH ++ R W I T A GEGL+EGLDWLSN + S
Sbjct: 124 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 182
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 239 bits (611), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 111/179 (62%), Positives = 143/179 (79%), Gaps = 1/179 (0%)
Query: 1 MGIMFTRLFSSLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYN 59
MG +F+ +F L+G NKE RIL+LGLD AGKTTILYRLQ+GEVV+T PTIGFNVET+ Y
Sbjct: 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK 60
Query: 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGA 119
N+K VWDLGGQTSIRPYWRCY+ +T A+I+VVDS+D +R+ A E H +L+EEEL+ A
Sbjct: 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120
Query: 120 VVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
+L+FANKQD PGAL + V++ L L ++K+R W+I +SAIKGEG+ EGLDWL + +K
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 179
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 235 bits (600), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 110/164 (67%), Positives = 134/164 (81%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75
+E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGGQTSIR
Sbjct: 1 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIR 60
Query: 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD 135
PYWRCY+ NT A+IYVVDS D +R+ I+K E A+LEEEELR A++++FANKQD+ A+
Sbjct: 61 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 120
Query: 136 DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+ + AL L +K+R+W IFKTSA KG GL E ++WL TLKS
Sbjct: 121 PSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 164
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 235 bits (599), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 109/179 (60%), Positives = 140/179 (78%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG +F LF LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
I F VWD+GGQ IRP WR YF NTQ +I+VVDS+D ER+ A++E +L E+ELR AV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+L+FANKQDLP A++ A +T+ L LH +++R W I T A G+GL+EGLDWLSN L++
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 179
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 234 bits (598), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 109/166 (65%), Positives = 134/166 (80%)
Query: 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTS 73
G +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGG TS
Sbjct: 1 GTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTS 60
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
IRPYWRCY+ NT A+IYVVDS D +R+ I+K E A+LEEEELR A++++FANKQD+ A
Sbjct: 61 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 120
Query: 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+ + + +L L +K+R+W IFKTSA KG GL E ++WL TLKS
Sbjct: 121 MTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 166
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 233 bits (593), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 108/178 (60%), Positives = 139/178 (78%)
Query: 2 GIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNI 61
G +F LF LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI
Sbjct: 1 GNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 60
Query: 62 KFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVV 121
F VWD+GGQ IRP WR YF NTQ +I+VVDS+D ER+ A++E +L E+ELR AV+
Sbjct: 61 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 120
Query: 122 LIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
L+FANKQDLP A++ A +T+ L LH +++R W I T A G+GL+EGLDWLSN L++
Sbjct: 121 LVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 178
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 232 bits (591), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 108/179 (60%), Positives = 139/179 (77%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG+ ++LFS+LFGNKE RIL++GLD AGKTT+LY+L++GEV++TIPTIGFNVETVQY N
Sbjct: 1 MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
I F VWD+GGQ IR WR Y+ NT+ +I+V+DS+D R+ A++ +L E+ELR AV
Sbjct: 61 ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAV 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
L+FANKQDLP A+ A +TE L LH I+NR W I T A GEGL+EGL+WLSN LK+
Sbjct: 121 WLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLKN 179
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 229 bits (584), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 107/178 (60%), Positives = 138/178 (77%)
Query: 2 GIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNI 61
G+ ++LFS+LFGNKE RIL++GLD AGKTT+LY+L++GEV++TIPTIGFNVETVQY NI
Sbjct: 2 GLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNI 61
Query: 62 KFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVV 121
F VWD+GGQ IR WR Y+ NT+ +I+VVDS+D R+ A++ +L E+ELR A
Sbjct: 62 SFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAW 121
Query: 122 LIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
L+FANKQDLP A+ A +TE L LH I+NR W I T A GEGL+EGL+WLSN+LK+
Sbjct: 122 LVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLKN 179
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 225 bits (574), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 102/179 (56%), Positives = 137/179 (76%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG+ +RLF+ LF K+ RIL++GLD AGKTTILY++++GEVV+TIPTIGFNVETV++ N
Sbjct: 1 MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
I F VWD+GGQ IRP WR Y+ NT +I+VVDS+D ER+ A++E H ++ EEEL+ A+
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAI 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+L+FANKQDLP A+ A VTE L L+ I+ R W I T A +G+GL+EG DWL+ L +
Sbjct: 121 ILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNN 179
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 224 bits (572), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 104/168 (61%), Positives = 134/168 (79%)
Query: 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQ 71
LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ
Sbjct: 160 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 219
Query: 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131
IRP WR YF NTQ +I+VVDS+D ER+ A++E +L E+ELR AV+L+FANKQDLP
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279
Query: 132 GALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
A++ A +T+ L LH +++R W I T A G+GL+EGLDWLSN L++
Sbjct: 280 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 224 bits (570), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 105/178 (58%), Positives = 135/178 (75%)
Query: 2 GIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNI 61
G+ ++LFS+LFGNKE RIL++GLD AGKTT+LY+L++GEV++TIPTIGFNVE VQY NI
Sbjct: 2 GLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYCNI 61
Query: 62 KFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVV 121
F VWD+GGQ IR WR Y+ NT+ +I+VVDS+D R+ A++ +L E+EL A
Sbjct: 62 SFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAW 121
Query: 122 LIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
L+FANKQDLP A+ A +TE L LH I+NR W I T A GEGL+EGL+WLSN LK+
Sbjct: 122 LVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNCLKN 179
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 221 bits (564), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 104/177 (58%), Positives = 134/177 (75%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG+ + LFS LFG K+ RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
I F VWD+GGQ IRP W+ YF NTQ +I+VVDS+D ER+ DE +L +ELR AV
Sbjct: 61 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
+L+FANKQDLP A+ + +T+ L L ++NR W + T A +G GL+EGLDWLSN L
Sbjct: 121 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNEL 177
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 217 bits (553), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 99/170 (58%), Positives = 133/170 (78%)
Query: 8 LFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWD 67
LFS +FG K+ RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD
Sbjct: 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWD 79
Query: 68 LGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANK 127
+GGQ IRP WR YF NTQ +I+VVDS+D ER+ + DE +L+E+ELR AV+L+FANK
Sbjct: 80 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANK 139
Query: 128 QDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
QD+P A+ + +T+ L L +++R W + T A +G GL++GLDWLS+ L
Sbjct: 140 QDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 217 bits (552), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 100/170 (58%), Positives = 131/170 (77%)
Query: 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDL 68
S L G KE RIL++GLD AGKT+ILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+
Sbjct: 9 LSKLLGKKEMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
Query: 69 GGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQ 128
GGQ IRP WR Y+ NTQAII+VVDS+D +R+ A++E +L E+E+R A++L+FANK
Sbjct: 69 GGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKH 128
Query: 129 DLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
DLP A+ + VTE L L IKNR+W + A G+GL+EGLDWL++ LK
Sbjct: 129 DLPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGLDWLADNLK 178
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 216 bits (550), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 99/161 (61%), Positives = 129/161 (80%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ IRP W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA 138
R YF NTQ +I+VVDS+D ER+ A++E +L E+ELR AV+L+FANKQDLP A++ A
Sbjct: 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 121
Query: 139 VTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+T+ L LH +++R W I T A G+GL+EGLDWLSN L++
Sbjct: 122 ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 162
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 213 bits (542), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 98/161 (60%), Positives = 128/161 (79%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GG IRP W
Sbjct: 4 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPLW 63
Query: 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA 138
R YF NTQ +I+VVDS+D ER+ A++E +L E+ELR AV+L+FANKQDLP A++ A
Sbjct: 64 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 123
Query: 139 VTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+T+ L LH +++R W I T A G+GL+EGLDWLSN L++
Sbjct: 124 ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 164
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 211 bits (537), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 94/173 (54%), Positives = 129/173 (74%)
Query: 7 RLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVW 66
++ S +FGNKE RIL+LGLD AGKTTILY+L++G+ V+TIPT+GFNVETV Y N+KF VW
Sbjct: 3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 62
Query: 67 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFAN 126
D+GGQ IRP WR Y+ TQ +I+VVD +D +R+ A+ E H I+ + E+R A++LIFAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 127 KQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
KQDLP A+ + E L L +I++R W + + A G+GL+EGL WL++ KS
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 211 bits (537), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 94/173 (54%), Positives = 129/173 (74%)
Query: 7 RLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVW 66
++ S +FGNKE RIL+LGLD AGKTTILY+L++G+ V+TIPT+GFNVETV Y N+KF VW
Sbjct: 2 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 61
Query: 67 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFAN 126
D+GGQ IRP WR Y+ TQ +I+VVD +D +R+ A+ E H I+ + E+R A++LIFAN
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121
Query: 127 KQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
KQDLP A+ + E L L +I++R W + + A G+GL+EGL WL++ KS
Sbjct: 122 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 174
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 208 bits (530), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 97/161 (60%), Positives = 124/161 (77%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
RIL++GLD AGKTT+LY+L++GEV++TIPTIGFNVETVQY NI F VWD+GGQ IR W
Sbjct: 2 RILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLW 61
Query: 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA 138
R Y+ NT+ +I+VVDS+D R+ A++ +L E+ELR A L+FANKQDLP A+ A
Sbjct: 62 RHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAE 121
Query: 139 VTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+TE L LH I+NR W I T A GEGL+EGL+WLSN+LK+
Sbjct: 122 ITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLKN 162
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 208 bits (529), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 128/173 (73%)
Query: 7 RLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVW 66
++ S +FGNKE RIL+LGLD AGKTTILY+L++G+ V+TIPT+GFNVETV Y N+KF VW
Sbjct: 3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 62
Query: 67 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFAN 126
D+GG IRP WR Y+ TQ +I+VVD +D +R+ A+ E H I+ + E+R A++LIFAN
Sbjct: 63 DVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 127 KQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
KQDLP A+ + E L L +I++R W + + A G+GL+EGL WL++ KS
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 208 bits (529), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 108/165 (65%), Positives = 128/165 (77%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74
+E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGG TSI
Sbjct: 5 TREXRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSI 64
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
RPYWRCY+ NT A+IYVVDS D +R+ I+K E A LEEEELR A++++FANKQD A
Sbjct: 65 RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAX 124
Query: 135 DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+ +L L +K+R+W IFKTSA KG GL E +WL TLKS
Sbjct: 125 TSSEXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWLVETLKS 169
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 204 bits (519), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 98/170 (57%), Positives = 134/170 (78%)
Query: 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQ 71
L +++ R+L+LGLDNAGKT+ILYRL +G+VV+T+PT+G N+ET+QY NI F+VWDLGGQ
Sbjct: 17 LPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQ 76
Query: 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131
T +RPYWRCYF +T A+IYVVDS+D +R+ +AK E +A+L+E+ELR +++LIFANKQDLP
Sbjct: 77 TGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLP 136
Query: 132 GALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSIG 181
A +A + E L + I NR W I K+S+ G+GL EG+DWL L+ G
Sbjct: 137 DAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQG 186
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 204 bits (518), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 91/167 (54%), Positives = 123/167 (73%)
Query: 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQT 72
NKE RIL+LGLD AGKTTILY+L++G+ V+TIPT+GFNVETV Y N+KF VWD+GGQ
Sbjct: 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQD 377
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132
IRP WR Y+ TQ +I+VVD +D +R+ A+ E H I+ + E+R A++LIFANKQDLP
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437
Query: 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
A+ + E L L +I++R W + + A G+GL+EGL WL++ KS
Sbjct: 438 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 484
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 197 bits (500), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 88/161 (54%), Positives = 120/161 (74%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
RIL+LGLD AGKTTILY+L++G+ V+TIPT+GFNVETV Y N+KF VWD+GGQ IRP W
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA 138
R Y+ TQ +I+VVD +D +R+ A+ E H I+ + E+R A++LIFANKQDLP A+
Sbjct: 62 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 121
Query: 139 VTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+ E L L +I++R W + + A G+GL+EGL WL++ KS
Sbjct: 122 IQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 162
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 196 bits (498), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 88/164 (53%), Positives = 121/164 (73%)
Query: 17 EARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP 76
E RIL+LGLD AGKTTILY+L++G+ V+TIPT+GFNVETV Y N+KF VWD+GG IRP
Sbjct: 2 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 61
Query: 77 YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD 136
WR Y+ TQ +I+VVD +D +R+ A+ E H I+ + E+R A++LIFANKQDLP A+
Sbjct: 62 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 121
Query: 137 AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
+ E L L +I++R W + + A G+GL+EGL WL++ KS+
Sbjct: 122 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSL 165
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 196 bits (497), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 88/163 (53%), Positives = 120/163 (73%)
Query: 17 EARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP 76
E RIL+LGLD AGKTTILY+L++G+ V+TIPT+GFNVETV Y N+KF VWD+GG IRP
Sbjct: 3 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 62
Query: 77 YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD 136
WR Y+ TQ +I+VVD +D +R+ A+ E H I+ + E+R A++LIFANKQDLP A+
Sbjct: 63 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 122
Query: 137 AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+ E L L +I++R W + + A G+GL+EGL WL++ KS
Sbjct: 123 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 165
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 193 bits (491), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 118/157 (75%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
RIL+LGLD AGKTTILY+L++G+ V+TIPT+GFNVETV Y N+KF VWD+GGQ IRP W
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA 138
R Y+ TQ +I+VVD +D +R+ A+ E H I+ + E+R A++LIFANKQDLP A+
Sbjct: 62 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 121
Query: 139 VTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175
+ E L L +I++R W + + A G+GL+EGL WL++
Sbjct: 122 IQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 158
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 193 bits (490), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 88/161 (54%), Positives = 117/161 (72%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
RIL LGLD AGKTTILY+L++G+ V+TIPT+GFNVETV Y N+KF VWD+GGQ IRP W
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA 138
R Y+ TQ +I+VVD +D +R+ A+ E H I+ + E R A++LIFANKQDLP A
Sbjct: 62 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHE 121
Query: 139 VTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+ E L L +I++R W + + A G+GL+EGL WL++ KS
Sbjct: 122 IQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 162
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 187 bits (474), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 127/178 (71%), Gaps = 1/178 (0%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI+FTR++ LF ++E +++++GLDNAGKTTILY+ M EVV T PTIG NVE + NN
Sbjct: 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
+F +WD+GGQ S+R W Y+ NT+ +I VVDS+D ER+ + ++E + +L E+LR A
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
+LIFANKQD+ + A +++ L+L IK+ QW I A+ GEGL +GL+W+ + LK
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 187 bits (474), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 89/177 (50%), Positives = 123/177 (69%), Gaps = 1/177 (0%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG++F +L+S LF N+E +++++GLDNAGKTTILY+ M EVV T PTIG NVE + N
Sbjct: 1 MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN 59
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
F +WD+GGQ S+R W Y+ NT+ II VVDS D ERL I K+E + +L E+LR A
Sbjct: 60 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA 119
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
VLIFANKQD+ G + A +++ L L IK+ W I A+ GEGL +GL+W+++ +
Sbjct: 120 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 187 bits (474), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 127/178 (71%), Gaps = 1/178 (0%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI+FTR++ LF ++E +++++GLDNAGKTTILY+ M EVV T PTIG NVE + NN
Sbjct: 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
+F +WD+GGQ S+R W Y+ NT+ +I VVDS+D ER+ + ++E + +L E+LR A
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
+LIFANKQD+ + A +++ L+L IK+ QW I A+ GEGL +GL+W+ + LK
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 177 bits (448), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/165 (52%), Positives = 116/165 (70%), Gaps = 2/165 (1%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTI-PTIGFNVETVQYNNIKFQVWDLGGQTSI 74
+E R+L+LGLDNAGKTTIL + GE V TI PT+GFN++T+++ K +WD+GGQ S+
Sbjct: 17 RELRLLMLGLDNAGKTTILKKFN-GEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 75
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
R YWR YF +T +I+VVDS+D +R+ + E ++L EE L GA +LIFANKQDLPGAL
Sbjct: 76 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135
Query: 135 DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
A+ EALEL I++ W I SA+ GE L G+DWL + + S
Sbjct: 136 SXNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 176 bits (446), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 86/165 (52%), Positives = 116/165 (70%), Gaps = 2/165 (1%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTI-PTIGFNVETVQYNNIKFQVWDLGGQTSI 74
+E R+L+LGLDNAGKTTIL + GE V TI PT+GFN++T+++ K +WD+GGQ S+
Sbjct: 17 RELRLLMLGLDNAGKTTILKKFN-GEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 75
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
R YWR YF +T +I+VVDS+D +R+ + E ++L EE L GA +LIFANKQDLPGAL
Sbjct: 76 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135
Query: 135 DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
A+ EALEL I++ W I SA+ GE L G+DWL + + S
Sbjct: 136 SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 176 bits (445), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 84/165 (50%), Positives = 115/165 (69%), Gaps = 2/165 (1%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTI-PTIGFNVETVQYNNIKFQVWDLGGQTSI 74
+E R+L+LGLDNAGKTTIL + GE + TI PT+GFN++T+++ K +WD+GGQ S+
Sbjct: 15 RELRLLMLGLDNAGKTTILKKFN-GEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 73
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
R YWR YF +T +I+VVDS+D +R+ + E ++L EE L GA +LIFANKQDLPGAL
Sbjct: 74 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 133
Query: 135 DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
A+ E LEL I++ W I SA+ GE L G+DWL + + S
Sbjct: 134 SSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISS 178
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 173 bits (439), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 116/164 (70%)
Query: 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTS 73
G++E +++++GLDNAGKTTILY+ M EVV T PTIG NVE + NN +F +WD+GGQ S
Sbjct: 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQES 77
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
+R W Y+ NT+ +I VVDS+D ER+ + ++E + +L E+LR A +LIFANKQD+
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
+ A +++ L+L IK+ QW I A+ GEGL +GL+W+ + L
Sbjct: 138 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 173 bits (439), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 116/164 (70%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74
++E +++++GLDNAGKTTILY+ M EVV T PTIG NVE + NN +F +WD+GGQ S+
Sbjct: 20 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESL 79
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
R W Y+ NT+ +I VVDS+D ER+ + ++E + +L E+LR A +LIFANKQD+ +
Sbjct: 80 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 139
Query: 135 DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
A +++ L+L IK+ QW I A+ GEGL +GL+W+ + LK
Sbjct: 140 TVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 183
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 171 bits (432), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/162 (51%), Positives = 113/162 (69%), Gaps = 2/162 (1%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTI-PTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77
R+L+LGLDNAGKTTIL + GE V TI PT+GFN++T+++ K +WD+GG S+R Y
Sbjct: 3 RLLMLGLDNAGKTTILKKFN-GEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRSY 61
Query: 78 WRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDA 137
WR YF +T +I+VVDS+D +R+ + E ++L EE L GA +LIFANKQDLPGAL
Sbjct: 62 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCN 121
Query: 138 AVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
A+ EALEL I++ W I SA+ GE L G+DWL + + S
Sbjct: 122 AIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 163
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 162 bits (411), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 106/155 (68%), Gaps = 2/155 (1%)
Query: 26 DNAGKTTILYRLQMGEVVSTI-PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
DNAGKTTIL + GE V TI PT+GFN++T+++ K +WD+GGQ S+R YWR YF +
Sbjct: 27 DNAGKTTILKKFN-GEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFES 85
Query: 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALE 144
T +I+VVDS+D +R + E ++L EE L GA +LIFANKQDLPGAL A+ EALE
Sbjct: 86 TDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALE 145
Query: 145 LHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
L I++ W I SA+ GE L G+DWL + + S
Sbjct: 146 LDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 106/164 (64%)
Query: 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTS 73
G E RIL+LGLDNAGKTT+L +L ++ PT GFN+++VQ K VWD+GGQ
Sbjct: 1 GGSEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRK 60
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
IRPYWR YF NT +IYV+DS+D +R E +LEEE+L VLIFANKQDL A
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 120
Query: 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
+ + E L LH I++R W I SA+ GEG+ +G++W+ +
Sbjct: 121 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 151 bits (381), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 108/165 (65%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74
++E RIL+LGLDNAGKTT+L +L ++ PT GFN+++VQ K VWD+GGQ I
Sbjct: 15 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKI 74
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
RPYWR YF NT +IYV+DS+D +R E +LEEE+L VLIFANKQDL A
Sbjct: 75 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 134
Query: 135 DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+ + E L LH I++R W I SA+ GEG+ +G++W+ + +
Sbjct: 135 PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 179
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 150 bits (380), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 108/165 (65%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74
++E RIL+LGLDNAGKTT+L +L ++ PT GFN+++VQ K VWD+GGQ I
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKI 73
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
RPYWR YF NT +IYV+DS+D +R E +LEEE+L VLIFANKQDL A
Sbjct: 74 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133
Query: 135 DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+ + E L LH I++R W I SA+ GEG+ +G++W+ + +
Sbjct: 134 PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 105/164 (64%)
Query: 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTS 73
G E RIL+LGLDNAGKTT+L +L ++ PT GFN+++VQ K VWD+GG
Sbjct: 1 GGSEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGLRK 60
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
IRPYWR YF NT +IYV+DS+D +R E +LEEE+L VLIFANKQDL A
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 120
Query: 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
+ + E L LH I++R W I SA+ GEG+ +G++W+ +
Sbjct: 121 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 145 bits (366), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 110/171 (64%), Gaps = 4/171 (2%)
Query: 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVST--IPTIGFNVETVQYNNIKFQVWDLGGQ 71
G+KE +L LGLDN+GKTTI+ +L+ S +PTIGF++E + +++ F V+D+ GQ
Sbjct: 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQ 77
Query: 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEEL--RGAVVLIFANKQD 129
R W Y+ QAII+V+DSSD R+V+AK+E +L ++ R +L FANK D
Sbjct: 78 GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMD 137
Query: 130 LPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
L A+ V++ L L IK++ W I + AIKGEGL EG+DWL + ++++
Sbjct: 138 LRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTV 188
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 123 bits (309), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 99/166 (59%), Gaps = 1/166 (0%)
Query: 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEV-VSTIPTIGFNVETVQYNNIKFQVWD 67
F +LF +E + ++GL +GKTT + + G+ IPT+GFN+ + N+ ++WD
Sbjct: 23 FKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWD 82
Query: 68 LGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANK 127
+GGQ R W Y AI+Y+VD++D E++ +K+E H +L++ +L+G VL+ NK
Sbjct: 83 IGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNK 142
Query: 128 QDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173
+DLPGALD+ + E + L I++R+ + S + + + L WL
Sbjct: 143 RDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 188
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 119 bits (298), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 98/168 (58%), Gaps = 10/168 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST--IPTIGFNVETVQYNNIKFQVWDLGGQTSIRP 76
++++ GLDN+GKTTI+ +++ + S T+G+NVET + + F V+D+GG R
Sbjct: 19 QVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRG 78
Query: 77 YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELR-----GAVV--LIFANKQD 129
W Y+ N A+I+VVDSSD RL + K E A+L+ E++R G V L FANK D
Sbjct: 79 LWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMD 138
Query: 130 LPGALDDAAVTEALELHKI-KNRQWAIFKTSAIKGEGLFEGLDWLSNT 176
GA A + E L+L + + + IF ++ +KG G+ EG WL T
Sbjct: 139 AAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQET 186
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 119 bits (298), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 98/168 (58%), Gaps = 2/168 (1%)
Query: 14 GNKEARILVL-GLDNAGKTTILYRLQMGEV-VSTIPTIGFNVETVQYNNIKFQVWDLGGQ 71
G+KE L L GL +GKTT + + G+ IPT+GFN+ + N+ ++WD+GGQ
Sbjct: 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQ 77
Query: 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131
R W Y AI+Y+VD++D E++ +K+E H +L++ +L+G VL+ NK+DLP
Sbjct: 78 PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137
Query: 132 GALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
GALD+ + E + L I++R+ + S + + + L WL KS
Sbjct: 138 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 97/168 (57%), Gaps = 2/168 (1%)
Query: 14 GNKEARILVL-GLDNAGKTTILYRLQMGEVV-STIPTIGFNVETVQYNNIKFQVWDLGGQ 71
G+KE L L GL +GKTT + + G+ IPT+GFN+ V N+ ++WD+GGQ
Sbjct: 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQ 77
Query: 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131
R W Y AI+Y++D++D E++ +++E H +L++ +L+G VL+ NK+DLP
Sbjct: 78 PRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLP 137
Query: 132 GALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
ALD+ + E + L I++R+ + S + + + L WL KS
Sbjct: 138 NALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 87/167 (52%), Gaps = 7/167 (4%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74
NK ++L LGLDNAGKTT+L+ L+ + + PT E + NIKF +DLGG
Sbjct: 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQA 80
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
R W+ YFP I+++VD++D ER A+ E A+ EL+ +I NK D P A+
Sbjct: 81 RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 140
Query: 135 DDAAVTEALEL------HKIK-NRQWAIFKTSAIKGEGLFEGLDWLS 174
+A + AL L +I+ R +F S + G E WLS
Sbjct: 141 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 187
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 7/165 (4%)
Query: 17 EARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP 76
++L LGLDNAGKTT+L+ L+ + + PT E + NIKF +DLGG R
Sbjct: 1 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARR 60
Query: 77 YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD 136
W+ YFP I+++VD++D ER A+ E A+ EL+ +I NK D P A+ +
Sbjct: 61 LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSE 120
Query: 137 AAVTEALEL------HKIK-NRQWAIFKTSAIKGEGLFEGLDWLS 174
A + AL L +I+ R +F S + G E WLS
Sbjct: 121 AELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 165
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 12/173 (6%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74
K +++ LGLDNAGKTT+L+ L+ + +PT+ E + + F +DLGG
Sbjct: 20 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQA 79
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
R W+ Y P I+++VD +D ERL+ +K+E +++ +E + +LI NK D P A+
Sbjct: 80 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 139
Query: 135 DDAAVTE------------ALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175
+ + E ++ L ++ R +F S +K +G EG W++
Sbjct: 140 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 192
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 12/173 (6%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74
K +++ LGLDNAGKTT+L+ L+ + +PT+ E + + F +DLGG
Sbjct: 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQA 82
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
R W+ Y P I+++VD +D ERL+ +K+E +++ +E + +LI NK D P A+
Sbjct: 83 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 142
Query: 135 DDAAVTE------------ALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175
+ + E ++ L ++ R +F S +K +G EG W++
Sbjct: 143 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 12/173 (6%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74
K +++ LGLDNAGKTT+L+ L+ + +PT+ E + + F +DLGG
Sbjct: 14 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGGIQA 73
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
R W+ Y P I+++VD +D ERL+ +K+E +++ +E + +LI NK D P A+
Sbjct: 74 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 133
Query: 135 DDAAVTE------------ALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175
+ + E ++ L ++ R +F S +K +G EG W++
Sbjct: 134 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 186
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 12/171 (7%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75
K +++ LGLDNAGKTT+L+ L+ + +PT+ E + + F +DLGG R
Sbjct: 34 KSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQAR 93
Query: 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD 135
W+ Y P I+++VD +D RLV +K E +A++ +E + +LI NK D A+
Sbjct: 94 RVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAIS 153
Query: 136 DAAVTEALELH------------KIKNRQWAIFKTSAIKGEGLFEGLDWLS 174
+ + E L+ ++ R +F S +K +G EG WLS
Sbjct: 154 EEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLS 204
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 19/161 (11%)
Query: 7 RLFSSLFGNKEARILVLGLDNAGKTTILYRLQ----MGEVVSTIPTIGFNVETVQYN--N 60
R + LF ++L++G GK+++L R G ++TI + F + TV+ N
Sbjct: 4 RDYDHLF-----KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG-VDFKIRTVEINGEK 57
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
+K Q+WD GQ R Y+ T +I V D + E V K H I +
Sbjct: 58 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVC 115
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQW-AIFKTSA 160
++ NK D P + V E + +K + +F+TSA
Sbjct: 116 RILVGNKNDDP----ERKVVETEDAYKFAGQMGIQLFETSA 152
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 11/147 (7%)
Query: 7 RLFSSLFGNKEA-----RILVLGLDNAGKTTILYRLQMGEV-VSTIPTIG--FNVETVQY 58
R S+ GN ++ +IL++G GK+ +L R + S I TIG F ++TV
Sbjct: 5 RTVSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI 64
Query: 59 N--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEEL 116
N +K Q+WD GQ R Y+ II V D +D ER ++ + E
Sbjct: 65 NGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTD-ERTFTNIKQWFKTVNEHAN 123
Query: 117 RGAVVLIFANKQDLPGALDDAAVTEAL 143
A +L+ NK D+ + A EAL
Sbjct: 124 DEAQLLLVGNKSDMETRVVTADQGEAL 150
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 13 FGNKEARILVLGLDNAGKTTILYRLQMGEV-VSTIPTIG--FNVETVQYN--NIKFQVWD 67
G+ +IL++G GK+ +L R + S I TIG F ++TV N +K Q+WD
Sbjct: 3 LGSSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWD 62
Query: 68 LGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANK 127
GQ R Y+ II V D +D ER ++ + E A +L+ NK
Sbjct: 63 TAGQERFRTITTAYYRGAMGIILVYDVTD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNK 121
Query: 128 QDLPGALDDAAVTEAL 143
D+ + A EAL
Sbjct: 122 SDMETRVVTADQGEAL 137
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 6/130 (4%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEV-VSTIPTIG--FNVETVQYN--NIKFQVWDLGGQTS 73
+IL++G GK+ +L R + S I TIG F ++TV N +K Q+WD GQ
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
R Y+ II V D +D ER ++ + E A +L+ NK D+
Sbjct: 65 FRTITTAYYRGAMGIILVYDITD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 123
Query: 134 LDDAAVTEAL 143
+ A EAL
Sbjct: 124 VVTADQGEAL 133
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTI-PTIG--FNVETVQYNN--IKFQVWDLGG 70
+E ++ +LG GK++I++R I PTIG F +TVQY N KF +WD G
Sbjct: 4 RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 71 QTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
Q R Y+ + A I V D + E K+ L + VV I NK DL
Sbjct: 64 QERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE-LRQHGPPSIVVAIAGNKCDL 122
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 6/130 (4%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEV-VSTIPTIG--FNVETVQYN--NIKFQVWDLGGQTS 73
+IL++G GK+ +L R + S I TIG F ++TV N +K Q+WD GQ
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
R Y+ II V D +D ER ++ + E A +L+ NK D
Sbjct: 65 FRTITTAYYRGAXGIILVYDITD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETR 123
Query: 134 LDDAAVTEAL 143
+ A EAL
Sbjct: 124 VVTADQGEAL 133
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 6/130 (4%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEV-VSTIPTIG--FNVETVQYN--NIKFQVWDLGGQTS 73
+IL++G GK+ +L R + S I TIG F ++TV N +K Q+WD GQ
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
R Y+ II V D +D ER ++ + E A +L+ NK D
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETR 123
Query: 134 LDDAAVTEAL 143
+ A EAL
Sbjct: 124 VVTADQGEAL 133
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 16/122 (13%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYN--NIKFQVWDLGGQTS 73
++L++G GKT +L+R ST I TIG F + T++ + IK Q+WD GQ
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69
Query: 74 IRPYWRCYFPNTQAIIYVVD-----SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQ 128
R Y+ I+ V D S D R I E HA + E+ +I NK
Sbjct: 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEK------MILGNKC 123
Query: 129 DL 130
D+
Sbjct: 124 DV 125
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 16/122 (13%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYN--NIKFQVWDLGGQTS 73
++L++G GKT +L+R ST I TIG F + T++ + IK Q+WD GQ
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 74 IRPYWRCYFPNTQAIIYVVD-----SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQ 128
R Y+ I+ V D S D R I E HA + E+ +I NK
Sbjct: 68 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEK------MILGNKC 121
Query: 129 DL 130
D+
Sbjct: 122 DV 123
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
+ +PT G + ++ F+++D+GGQ S R W F AII+ V SD + LV+A
Sbjct: 176 TRVPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 234
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 235 EDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTI-PTIG--FNVETVQYNN--IKFQVWDLGG 70
+E ++ +LG GK++I++R I PTIG F +TVQY N KF +WD G
Sbjct: 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 64
Query: 71 QTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
R Y+ + A I V D + E K+ L + VV I NK DL
Sbjct: 65 LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE-LRQHGPPSIVVAIAGNKCDL 123
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQ----MGEVVSTIPTIGFNVETVQYNN--IKFQVWDLGGQT 72
+IL++G + GKT+ L+R VST+ I F V+T+ N+ IK Q+WD GQ
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG-IDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131
R Y+ I + D ++ E +D + ++ A VL+ NK D+
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQVLLVGNKCDME 123
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV----------DSSDTERLVIAKDEFHA 109
+I F + D+GGQ S R W +F + I+V + +T RL + F
Sbjct: 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDGNTSRLTESIAVFKD 219
Query: 110 ILEEEELRGAVVLIFANKQDL 130
I E L+GAV LIF NK DL
Sbjct: 220 IXTNEFLKGAVKLIFLNKXDL 240
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
S + T G + ++ F+++D+GGQ S R W F AII+ V SD + LV+A
Sbjct: 179 SRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 237
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F++I + +++F NK+DL
Sbjct: 238 EDEEMNRMHESMHLFNSICNNKWFTDTSIILFLNKKDL 275
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVV-STIPTIG--FNVETVQYN--NIKFQVWDLGGQTS 73
++L++G GK+ +L R S I TIG F + T++ + IK Q+WD GQ
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
R Y+ II V D +D E K I + L+ NK DL
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI-DRYASENVNKLLVGNKSDL 126
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVV-STIPTIG--FNVETVQYN--NIKFQVWDLGGQTS 73
++L++G GK+ +L R S I TIG F + T++ + IK Q+WD GQ
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
R Y+ II V D +D E K I + L+ NK DL
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI-DRYASENVNKLLVGNKSDL 126
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
S + T G + ++ F+++D+GGQ S R W F AII+ V SD + LV+A
Sbjct: 148 SRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 206
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 207 EDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex
With Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQ----MGEVVSTIPTIGFNVETVQYN--NIKFQVWDLGGQT 72
++L++G GK+ +L R + +STI + F ++TV+ + +K Q+WD GQ
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG-VDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSDTE 98
R Y+ + II V D +D E
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQE 94
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQ----MGEVVSTIPTIGFNVETVQYN--NIKFQVWDLGGQT 72
++L++G GK+ +L R + +STI + F ++TV+ + +K Q+WD GQ
Sbjct: 23 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG-VDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSDTE 98
R Y+ + II V D +D E
Sbjct: 82 RFRTITSSYYRGSHGIIIVYDVTDQE 107
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQ----MGEVVSTIPTIGFNVETVQYN--NIKFQVWDLGGQT 72
++L++G GK+ +L R + +STI + F ++TV+ + +K Q+WD GQ
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG-VDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSDTE 98
R Y+ + II V D +D E
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQE 94
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 57 QYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSS----------DTERLVIAKDE 106
Q + + F ++D+GGQ R W F + AII+VV SS T RL A +
Sbjct: 213 QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNL 272
Query: 107 FHAILEEEELRGAVVLIFANKQDL 130
F +I LR V++F NKQDL
Sbjct: 273 FKSIWNNRWLRTISVILFLNKQDL 296
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 57 QYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSS----------DTERLVIAKDE 106
Q + + F ++D+GGQ R W F + AII+VV SS T RL A +
Sbjct: 199 QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNL 258
Query: 107 FHAILEEEELRGAVVLIFANKQDL 130
F +I LR V++F NKQDL
Sbjct: 259 FKSIWNNRWLRTISVILFLNKQDL 282
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 57 QYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSS----------DTERLVIAKDE 106
Q + + F ++D+GGQ R W F + AII+VV SS T RL A +
Sbjct: 213 QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNL 272
Query: 107 FHAILEEEELRGAVVLIFANKQDL 130
F +I LR V++F NKQDL
Sbjct: 273 FKSIWNNRWLRTISVILFLNKQDL 296
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 57 QYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSS----------DTERLVIAKDE 106
Q + + F ++D+GGQ R W F + AII+VV SS T RL A +
Sbjct: 199 QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNL 258
Query: 107 FHAILEEEELRGAVVLIFANKQDL 130
F +I LR V++F NKQDL
Sbjct: 259 FKSIWNNRWLRTISVILFLNKQDL 282
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 16/158 (10%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTI-PTIG--FNVETVQYN--NIKFQVWDLGGQTS 73
++++LG GK++I+ R + PTIG F + V N +KF++WD GQ
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAK---DEFHAILEEEELRGAVVLIFANKQDL 130
Y+ N QA + V D + + + A+ E H E+ + ++ + NK D
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELH----EQASKDIIIALVGNKIDX 120
Query: 131 --PGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166
G A E +L + K F+TSA GE +
Sbjct: 121 LQEGGERKVAREEGEKLAEEKG--LLFFETSAKTGENV 156
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVV-STIPTIG--FNVETVQYN--NIKFQVWDLGGQTS 73
++L++G GK+ +L R S I TIG F + T++ + IK Q+WD GQ
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTE 98
R Y+ II V D +D E
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQE 85
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 57 QYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSS----------DTERLVIAKDE 106
Q + + F ++D+GGQ R W F + AII+VV SS T RL A +
Sbjct: 213 QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNL 272
Query: 107 FHAILEEEELRGAVVLIFANKQDL 130
F +I LR V++F NKQDL
Sbjct: 273 FKSIWNNRWLRTISVILFLNKQDL 296
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVV-STIPTIG--FNVETVQYN--NIKFQVWDLGGQTS 73
++L++G GK+ +L R S I TIG F + T++ + IK Q+WD GQ
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTE 98
R Y+ II V D +D E
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQE 92
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVV-STIPTIG--FNVETVQYN--NIKFQVWDLGGQTS 73
++L++G GK+ +L R S I TIG F + T++ + IK Q+WD GQ
Sbjct: 27 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 86
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTE 98
R Y+ II V D +D E
Sbjct: 87 FRTITSSYYRGAHGIIVVYDVTDQE 111
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVV-STIPTIG--FNVETVQYN--NIKFQVWDLGGQTS 73
++L++G GK+ +L R S I TIG F + T++ + IK Q+WD GQ
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTE 98
R Y+ II V D +D E
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQE 102
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
S + T G + ++ F+ +D+GGQ S R W F AII+ V SD + LV+A
Sbjct: 173 SRVKTTGIIETQFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 231
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 232 EDEEXNRXHESXKLFDSICNNKWFTDTSIILFLNKKDL 269
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE----TVQYNNIKFQVWDLGGQTS 73
+I+V+G N GKT + YR G T TIG + + IK Q+WD GQ
Sbjct: 31 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 90
Query: 74 IRPYW-RCYFPNTQAIIYVVDSSD 96
R + Y+ N A+++V D ++
Sbjct: 91 FRKSMVQHYYRNVHAVVFVYDXTN 114
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVV-STIPTIG--FNVETVQYN--NIKFQVWDLGGQTS 73
++L++G GK+ +L R S I TIG F + T++ + IK Q+WD GQ
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTE 98
R Y+ II V D +D E
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQE 92
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 69/132 (52%), Gaps = 7/132 (5%)
Query: 20 ILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIK---FQVWDLGGQTSIRP 76
+L +GL ++GKT + RL G+ T +I + + NN + + DL G S+R
Sbjct: 10 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 69
Query: 77 YWRCYFPNT-QAIIYVVDSSDTERLV--IAKDEFHAILEEEELRGAVVLIFA-NKQDLPG 132
F ++ +A+++VVDS+ +R V +A+ + +++ L+ + L+ A NKQD+
Sbjct: 70 QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129
Query: 133 ALDDAAVTEALE 144
A + + LE
Sbjct: 130 AKSAKLIQQQLE 141
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVV-STIPTIG--FNVETVQYN--NIKFQVWDLGGQTS 73
++L++G GK+ +L R S I TIG F + T++ + IK Q+WD GQ
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTE 98
R Y+ II V D +D E
Sbjct: 70 FRTITSSYYRGAHGIIVVYDVTDQE 94
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
+ + T G + ++ F+++D+GGQ S R W F AII+ V SD + LV+A
Sbjct: 151 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 209
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 210 EDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 247
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
+ + T G + ++ F+++D+GGQ S R W F AII+ V SD + LV+A
Sbjct: 152 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 210
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 211 EDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 248
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVV-STIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
++L++G GK+ +L R S I TIG F + T+ N +K Q+WD GQ
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQER 70
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
R Y+ II V D +D + K I + + L+ NK DL
Sbjct: 71 FRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEI-DRYAMENVNKLLVGNKCDL 126
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
+ + T G + ++ F+++D+GGQ S R W F AII+ V SD + LV+A
Sbjct: 148 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 206
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 207 EDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
+ + T G + ++ F+++D+GGQ S R W F AII+ V SD + LV+A
Sbjct: 147 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 205
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 206 EDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 243
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
+ + T G + ++ F+++D+GGQ S R W F AII+ V SD + LV+A
Sbjct: 183 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 241
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 242 EDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 279
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
+ + T G + ++ F+++D+GGQ S R W F AII+ V SD + LV+A
Sbjct: 177 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 235
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 236 EDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 273
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 38 QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT 97
Q + + + T G + ++ F+++D+GGQ S R W F AII+ V SD
Sbjct: 145 QQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDY 204
Query: 98 ERLVIAKDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+ LV+A+DE F +I + +++F NK+DL
Sbjct: 205 D-LVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 247
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
+ + T G + ++ F+++D+GGQ S R W F AII+ V SD + LV+A
Sbjct: 146 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 204
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 205 EDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 242
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
+ + T G + ++ F+++D+GGQ S R W F AII+ V SD + LV+A
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 234
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 235 EDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
+ + T G + ++ F+++D+GGQ S R W F AII+ V SD + LV+A
Sbjct: 150 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 208
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 209 EDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 246
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
+ + T G + ++ F+++D+GGQ S R W F AII+ V SD + LV+A
Sbjct: 153 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 211
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 212 EDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 249
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
+ + T G + ++ F+++D+GGQ S R W F AII+ V SD + LV+A
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 234
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 235 EDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 14 GNK--EARILVLGLDNAGKTTILYRL---QMGEVVSTIPTIGFNVETVQYNN--IKFQVW 66
GNK + ++++LG GK++++ R Q E + F +TV ++ +KF++W
Sbjct: 1 GNKICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 67 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFAN 126
D GQ Y+ QA I V D ++ E AK+ L+ + V+ + N
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGN 119
Query: 127 KQDL 130
K DL
Sbjct: 120 KADL 123
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE----TVQYNNIKFQVWDLGGQTS 73
+I+V+G N GKT + YR G T TIG + + IK Q+WD GQ
Sbjct: 22 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 81
Query: 74 IRPYW-RCYFPNTQAIIYVVDSSD 96
R + Y+ N A+++V D ++
Sbjct: 82 FRKSMVQHYYRNVHAVVFVYDMTN 105
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 38 QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT 97
Q + + + T G + ++ F+++D+GGQ S R W F AII+ V SD
Sbjct: 142 QQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDY 201
Query: 98 ERLVIAKDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+ LV+A+DE F +I + +++F NK+DL
Sbjct: 202 D-LVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVV-STIPTIG--FNVETVQYN--NIKFQVWDLGGQTS 73
++L++G GK+ +L R S I TIG F + T++ + IK Q+WD GQ
Sbjct: 35 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTE 98
R Y+ II V D +D E
Sbjct: 95 FRTITSSYYRGAHGIIVVYDVTDQE 119
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
+ + T G + ++ F+++D+GGQ S R W F AII+ V SD + LV+A
Sbjct: 179 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 237
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 238 EDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 275
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 14 GNK--EARILVLGLDNAGKTTILYRL---QMGEVVSTIPTIGFNVETVQYNN--IKFQVW 66
GNK + ++++LG GK++++ R Q E + F +TV ++ +KF++W
Sbjct: 1 GNKICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 67 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFAN 126
D GQ Y+ QA I V D ++ E AK+ L+ + V+ + N
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGN 119
Query: 127 KQDL 130
K DL
Sbjct: 120 KADL 123
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
+ + T G + ++ F+++D+GGQ S R W F AII+ V SD + LV+A
Sbjct: 145 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 203
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 204 EDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 241
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 14 GNK--EARILVLGLDNAGKTTILYRL---QMGEVVSTIPTIGFNVETVQYNN--IKFQVW 66
GNK + ++++LG GK++++ R Q E + F +TV ++ +KF++W
Sbjct: 1 GNKICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 67 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFAN 126
D GQ Y+ QA I V D ++ E AK+ L+ + V+ + N
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGN 119
Query: 127 KQDL 130
K DL
Sbjct: 120 KADL 123
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
+ + T G + ++ F+++D+GGQ S R W F AII+ V SD + LV+A
Sbjct: 146 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 204
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 205 EDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 242
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 19 RILVLGLDNAGKTTILYRL---QMGEVVSTIPTIGFNVETVQYNN--IKFQVWDLGGQTS 73
++++LG GK++++ R Q E + F +TV ++ +KF++WD GQ
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQER 66
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132
Y+ QA I V D ++T+ AK+ L+ + V+ + NK DL
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKE-LQRQASPNIVIALAGNKADLAS 124
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVV-STIPTIG--FNVETVQYN--NIKFQVWDLGGQTS 73
++L++G GK +L R S I TIG F + T++ + IK Q+WD GQ
Sbjct: 18 KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTE 98
R Y+ II V D +D E
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQE 102
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 14 GNK--EARILVLGLDNAGKTTILYRL---QMGEVVSTIPTIGFNVETVQYNN--IKFQVW 66
GNK + ++++LG GK++++ R Q E + F +TV ++ +KF++W
Sbjct: 1 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 67 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFAN 126
D GQ Y+ QA I V D ++ E AK+ L+ + V+ + N
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGN 119
Query: 127 KQDL 130
K DL
Sbjct: 120 KADL 123
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 18/170 (10%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYN------------NIKF 63
++L LG GKTT LYR + I T+G F + V YN +
Sbjct: 27 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86
Query: 64 QVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLI 123
Q+WD GQ R +F + + + D + + + ++ + +++
Sbjct: 87 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 146
Query: 124 FANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173
NK DLP D V E F+TSA G+ + + ++ L
Sbjct: 147 IGNKADLP---DQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 193
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 14 GNK--EARILVLGLDNAGKTTILYRL---QMGEVVSTIPTIGFNVETVQYNN--IKFQVW 66
GNK + ++++LG GK++++ R Q E + F +TV ++ +KF++W
Sbjct: 2 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 61
Query: 67 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFAN 126
D GQ Y+ QA I V D ++ E AK+ L+ + V+ + N
Sbjct: 62 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGN 120
Query: 127 KQDL 130
K DL
Sbjct: 121 KADL 124
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 14 GNK--EARILVLGLDNAGKTTILYRL---QMGEVVSTIPTIGFNVETVQYNN--IKFQVW 66
GNK + ++++LG GK++++ R Q E + F +TV ++ +KF++W
Sbjct: 1 GNKICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 67 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFAN 126
D GQ Y+ QA I V D ++ E AK+ L+ + V+ + N
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGN 119
Query: 127 KQDL 130
K DL
Sbjct: 120 KADL 123
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 18/179 (10%)
Query: 13 FGNKEARILVLGLDNA-GKTTILYRL---QMGEVVSTIPTIGFNVET--VQYNNIKFQVW 66
F +++A +VL D A GK++ L RL + E +S + F ++T V Q+W
Sbjct: 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLW 82
Query: 67 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFAN 126
D GQ R + YF ++ + D + E+ + E+ ++E+ +++ N
Sbjct: 83 DTAGQERFRSIAKSYFRKADGVLLLYDVT-CEKSFLNIREWVDMIEDAAHETVPIMLVGN 141
Query: 127 KQDLPGALDDAAVTEALEL------HKIKNRQWAIF-KTSAIKGEGLFEGLDWLSNTLK 178
K D+ D A TE + K+ A+F +TSA G + E + L+ +K
Sbjct: 142 KADIR----DTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 6/117 (5%)
Query: 20 ILVLGLDNAGKTTILYRLQMGEVV-STIPTIG--FNVETVQYN--NIKFQVWDLGGQTSI 74
+L++G GK+ +L R S I TIG F + T++ + IK Q+WD GQ
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131
R Y+ II V D +D E K I + L+ NK DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI-DRYASENVNKLLVGNKCDLT 116
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 10/103 (9%)
Query: 38 QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT 97
Q +++ PT G + + ++ F+++D+GGQ S R W F AII+ V SD
Sbjct: 157 QQDILLARRPTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDY 216
Query: 98 ERLVIAKDEFHAILEEEELRGAV----------VLIFANKQDL 130
+++++ + + + E +L ++ +++F NK+DL
Sbjct: 217 DQVLMEDRQTNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 259
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 14 GNK--EARILVLGLDNAGKTTILYRL---QMGEVVSTIPTIGFNVETVQYNN--IKFQVW 66
GNK + ++++LG GK++++ R Q E + F +TV ++ +KF++W
Sbjct: 2 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 61
Query: 67 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFAN 126
D GQ Y+ QA I V D ++ E AK+ L+ + V+ + N
Sbjct: 62 DTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGN 120
Query: 127 KQDL 130
K DL
Sbjct: 121 KADL 124
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 19 RILVLGLDNAGKTTILYRL---QMGEVVSTIPTIGFNVETVQYNN--IKFQVWDLGGQTS 73
++++LG GK++++ R Q E + F +TV ++ +KF++WD GQ
Sbjct: 5 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 64
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132
Y+ QA I V D ++T+ AK+ L+ + V+ + NK DL
Sbjct: 65 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKE-LQRQASPNIVIALAGNKADLAS 122
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQ----MGEVVSTIPTIGFNVETVQYNN--IKFQVWDLGGQT 72
++L++G + GKT+ L+R VST+ I F V+TV ++ IK Q+WD GQ
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG-IDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
R Y+ + + D ++ E +D + ++ A V++ NK DL
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQD-WATQIKTYSWDNAQVILVGNKCDL 139
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
+ + T G + ++ F+++D+GGQ S R W F AII+ V SD + LV+A
Sbjct: 153 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 211
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 212 EDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 249
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
+ + T G + ++ F+++D+GGQ S R W F AII+ V SD + LV+A
Sbjct: 146 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 204
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 205 EDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 242
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
+ + T G + ++ F+++D+GGQ S R W F AII+ V SD + LV+A
Sbjct: 153 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 211
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 212 EDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 249
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
+ + T G + ++ F+++D+GGQ S R W F AII+ V SD + LV+A
Sbjct: 176 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 234
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 235 EDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 272
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 14 GNK--EARILVLGLDNAGKTTILYRL---QMGEVVSTIPTIGFNVETVQYNN--IKFQVW 66
GNK + ++++LG GK++++ R Q E + F +TV ++ +KF++W
Sbjct: 1 GNKICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 67 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFAN 126
D GQ Y+ QA I V D ++ E AK+ L+ + V+ + N
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGN 119
Query: 127 KQDL 130
K DL
Sbjct: 120 KADL 123
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
+ + T G + ++ F+++D+G Q S R W F AII+ V SD + LV+A
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 234
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 235 EDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
+ + T G + ++ F+++D+ GQ S R W F AII+ V SD + LV+A
Sbjct: 177 TRVKTTGIVETHFTFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 235
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 236 EDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 273
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 8/118 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQ----MGEVVSTIPTIGFNVETV--QYNNIKFQVWDLGGQT 72
++L++G + GKT+ L+R VST+ I F V+TV +K Q+WD GQ
Sbjct: 25 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVG-IDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
R Y+ I + D ++ E +D + ++ A V++ NK D+
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYSWDNAQVILVGNKCDM 140
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 26/159 (16%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEV-VSTIPTIG--FNVETVQYNN---IKFQVWDLGGQT 72
+I+++G GK+ +L R E + + TIG F +++Q N IK Q+WD GQ
Sbjct: 9 KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQE 68
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFAN 126
R Y+ + V D + K+ F I L + V+L+ N
Sbjct: 69 RYRAITSAYYRGAVGALLVYD-------ITKKNSFENIEKWLKELRDNADSNIVILLVGN 121
Query: 127 KQDLPG--ALDDAAVTEALELHKIKNRQWAIFKTSAIKG 163
K DL ++D T+ + K+ A +TSA++
Sbjct: 122 KSDLKHLRVINDNDATQYAKKEKL-----AFIETSALEA 155
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 18/126 (14%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTI-PTIG--FNVETVQYNN--IKFQVWDLGG 70
+E ++ +LG GK++I+ R I PTIG F +TV N KF +WD G
Sbjct: 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAG 81
Query: 71 QTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIF 124
Q Y+ + A + V D + +D F+ + L+E V+ I
Sbjct: 82 QERFHSLAPMYYRGSAAAVIVYD-------ITKQDSFYTLKKWVKELKEHGPENIVMAIA 134
Query: 125 ANKQDL 130
NK DL
Sbjct: 135 GNKCDL 140
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQ----MGEVVSTIPTIGFNVETVQYNN--IKFQVWDLGGQT 72
+IL++G + GKT+ L+R VST+ I F V+T+ N+ IK Q+WD G
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTV-GIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQD 129
R Y+ I D ++ E +D + ++ A VL+ NK D
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESFNAVQD-WSTQIKTYSWDNAQVLLVGNKCD 124
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYNNIKFQVWDLGGQTS 73
N A+ + LD G Y+ +++ T + T G + N+ F+++D+GGQ S
Sbjct: 129 NDSAKYYLDSLDRIGAGD--YQPTEQDILRTRVKTTGIVETHFTFKNLHFRLFDVGGQRS 186
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDE-----------FHAILEEEELRGAVVL 122
R W F + AII+ V S ++ V+ +DE F +I + ++
Sbjct: 187 ERKKWIHCFEDVTAIIFCVALSGYDQ-VLHEDETTNRMHESLMLFDSICNNKFFIDTSII 245
Query: 123 IFANKQDLPG 132
+F NK+DL G
Sbjct: 246 LFLNKKDLFG 255
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
+ + T G + ++ F+++D+GG S R W F AII+ V SD + LV+A
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYD-LVLA 234
Query: 104 KDE-----------FHAILEEEELRGAVVLIFANKQDL 130
+DE F +I + +++F NK+DL
Sbjct: 235 EDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST--IPTIGFN----VETVQYNNIKFQVWDLGGQT 72
+++++G GKT +L R + G ++ I T+G + V V +K Q+WD GQ
Sbjct: 12 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSD 96
R Y+ + A++ + D ++
Sbjct: 72 RFRSVTHAYYRDAHALLLLYDVTN 95
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 69/164 (42%), Gaps = 9/164 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEV-VSTIPTIGFNVET----VQYNNIKFQVWDLGGQTS 73
+I+++G GK+ +L R E + + TIG T ++ IK Q+WD GQ
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
R Y+ + V D S + + E + AV LI NK DL A
Sbjct: 75 YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLI-GNKSDL--A 131
Query: 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
A TE + +N Q +TSA+ E + + + L NT+
Sbjct: 132 HLRAVPTEESKTFAQEN-QLLFTETSALNSENVDKAFEELINTI 174
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 19 RILVLGLDNAGKTTILYRL---QMGEVVSTIPTIGFNVETVQYNN--IKFQVWDLGGQTS 73
++++LG GK++++ R Q E + F ++V ++ +KF++WD GQ
Sbjct: 10 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 69
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
Y+ QA I V D ++ E AK L+ + V+ + NK DL
Sbjct: 70 YHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKE-LQRQASPSIVIALAGNKADL 125
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKD 105
+PT G ++ F++ D+GGQ S R W F N +I+++V S+ +++++ D
Sbjct: 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 211
Query: 106 E----------FHAILEEEELRGAVVLIFANKQDL 130
F I+ + + V++F NK+DL
Sbjct: 212 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKD 105
+PT G ++ F++ D+GGQ S R W F N +I+++V S+ +++++ D
Sbjct: 180 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 239
Query: 106 E----------FHAILEEEELRGAVVLIFANKQDL 130
F I+ + + V++F NK+DL
Sbjct: 240 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 274
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAK 104
+PT G ++ F++ D+GGQ S R W F N +I+++V S+ +++++
Sbjct: 171 CVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVES 230
Query: 105 DE----------FHAILEEEELRGAVVLIFANKQDL 130
D F I+ + + V++F NK+DL
Sbjct: 231 DNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 266
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 11/134 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMG---EVVSTIPTIGFNVET--VQYNNIKFQVWDLGGQTS 73
+++++G + GKT ++ R + G E + + F ++T +Q +K Q+WD GQ
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGA--VVLIFANKQDLP 131
R + Y+ + I D + + H I + + G+ V L+ NK DL
Sbjct: 91 FRTITQSYYRSANGAILAYDITKRSSFLSVP---HWIEDVRKYAGSNIVQLLIGNKSDLS 147
Query: 132 GALDDAAVTEALEL 145
L + ++ EA L
Sbjct: 148 -ELREVSLAEAQSL 160
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKD 105
+PT G ++ F++ D+GGQ S R W F N +I+++V S+ +++++ D
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 106 E----------FHAILEEEELRGAVVLIFANKQDL 130
F I+ + + V++F NK+DL
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 14/121 (11%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIP-----TIG--FNVETVQYN--NIKFQVWDLG 69
+I+++G GKT ++ R G P TIG F ++TV+ N +K Q+WD
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQG----LFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 83
Query: 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQD 129
GQ R + Y+ + A+I D + E + I E+ + ++ NK D
Sbjct: 84 GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREI-EQYASNKVITVLVGNKID 142
Query: 130 L 130
L
Sbjct: 143 L 143
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMG----EVVSTIPTIGFNVETVQY--NNIKFQVWDLGGQT 72
+IL++G GK+++L R E+ +TI + F V+T+ N K +WD GQ
Sbjct: 17 KILIIGESGVGKSSLLLRFTDDTFDPELAATIG-VDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 73 SIRPYWRCYFPNTQAIIYVVD 93
R Y+ Q +I V D
Sbjct: 76 RFRTLTPSYYRGAQGVILVYD 96
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 28/175 (16%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQY------------NNIKF 63
+ L LG GKT++LY+ G+ S I T+G F + V Y I
Sbjct: 13 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 64 QVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLV-----IAKDEFHAILEEEELRG 118
Q+WD G R +F + + + D ++ + + I++ + HA E +
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD--- 129
Query: 119 AVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173
+++ NK DL D AV E + F+TSA G + ++ L
Sbjct: 130 --IVLCGNKSDLE---DQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEML 179
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQ---MGEVVSTIPTIGFNVETVQY--NNIKFQVWDLGGQTS 73
+++++G GKT+++ R E + + F ++TV+ I+ Q+WD GQ
Sbjct: 28 QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 87
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTE 98
Y+ + + II V D + E
Sbjct: 88 FNSITSAYYRSAKGIILVYDITKKE 112
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 19 RILVLGLDNAGKTTILYRL---QMGEVVSTIPTIGFNVETVQYNN--IKFQVWDLGGQTS 73
++++LG GK++++ R Q E + F +TV ++ +KF++WD G
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132
Y+ QA I V D ++T+ AK+ L+ + V+ + NK DL
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKE-LQRQASPNIVIALAGNKADLAS 124
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKD 105
+PT G ++ F++ D+GGQ S R W F N +I+++V S+ +++++ D
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 106 E----------FHAILEEEELRGAVVLIFANKQDL 130
F I+ + + V++F NK+DL
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIA 103
S + T G + ++ F+++D+GGQ S R W F II++ S + +++
Sbjct: 147 SRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVE 206
Query: 104 KDE----------FHAILEEEELRGAVVLIFANKQDL 130
DE F++I +++F NK+D+
Sbjct: 207 DDEVNRMHESLHLFNSICNHRYFATTSIVLFLNKKDV 243
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 19/138 (13%)
Query: 14 GNKE--ARILVLGLDNAGKTTILYRLQMGEVV----STIPTIGFNVETVQYNN--IKFQV 65
GNK A++++LG AGK++++ R + V STI F+ +T+ N+ +KF++
Sbjct: 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFS-QTLAVNDATVKFEI 65
Query: 66 WDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFA 125
WD GQ Y+ A I V D ++ AK ++E + +G ++ A
Sbjct: 66 WDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKK----WVQELQAQGNPNMVMA 121
Query: 126 ---NKQDLPGALDDAAVT 140
NK DL LD VT
Sbjct: 122 LAGNKSDL---LDARKVT 136
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSD----------TERLVIAKDEFHAI 110
I F++ D+GGQ S R W F +I+++V SS+ T RLV + + F I
Sbjct: 199 IPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRLVESMNIFETI 258
Query: 111 LEEEELRGAVVLIFANKQDL 130
+ + +++F NK DL
Sbjct: 259 VNNKLFFNVSIILFLNKMDL 278
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 19 RILVLGLDNAGKTTILYRL---QMGEVVSTIPTIGFNVETVQYNN--IKFQVWDLGGQTS 73
++++LG GK++++ R Q E + F +TV ++ +KF++WD G
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
Y+ QA I V D ++ E AK+ L+ + V+ + NK DL
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 122
>pdb|3LLU|A Chain A, Crystal Structure Of The Nucleotide-Binding Domain Of Ras-
Related Gtp-Binding Protein C
Length = 196
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 20/155 (12%)
Query: 13 FGNKEARILVLGLDNAGKTTI----LYRLQMGEVVSTIPTIGFNVETVQYNN-IKFQVWD 67
F + RIL++GL +GK++I +++ E + T + + ++ + FQ+WD
Sbjct: 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWD 75
Query: 68 LGGQTS-IRPY--WRCYFPNTQAIIYVVDSSDT-----ERLVIAKDEFHAILEEEELRGA 119
GQ P + F T A+IYV+D+ D RL I + + + +
Sbjct: 76 FPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFE-- 133
Query: 120 VVLIFANKQDLPGALDDAAVTEALELHKIKNRQWA 154
+F +K D G DD + ++H+ N A
Sbjct: 134 ---VFIHKVD--GLSDDHKIETQRDIHQRANDDLA 163
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 14/165 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYNN----IKFQVWDLGGQTS 73
+++++G GKTT + R GE +PT+G V + ++ IKF VWD GQ
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPG 132
Y+ Q I + D T R+ +H L +VL NK D+
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIVLC-GNKVDIK- 127
Query: 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
D +++ H+ KN Q+ + SA + WL+ L
Sbjct: 128 --DRKVKAKSIVFHRKKNLQY--YDISAKSNYNFEKPFLWLARKL 168
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 18/170 (10%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYN------------NIKF 63
++L LG GKTT LYR + I T+G F + V Y+ +
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 64 QVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLI 123
Q+WD G R +F + + + D + + + ++ + +++
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 124 FANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173
NK DLP D V E + F+TSA G+ + + ++ L
Sbjct: 133 IGNKADLP---DQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETL 179
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 18/170 (10%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYN------------NIKF 63
++L LG GKTT LYR + I T+G F + V Y+ +
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 64 QVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLI 123
Q+WD G R +F + + + D + + + ++ + +++
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 124 FANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173
NK DLP D V E + F+TSA G+ + + ++ L
Sbjct: 133 IGNKADLP---DQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETL 179
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 17/161 (10%)
Query: 19 RILVLGLDNAGKTTILY-----RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTS 73
+ LV+G GK+ +L+ + + + G V V +K Q+WD GQ
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGA---VVLIFANKQDL 130
R R Y+ + V D + E + A L + + VV++ NK+D
Sbjct: 87 FRSVTRSYYRGAAGALLVYDITSRE----TYNSLAAWLTDARTLASPNIVVILCGNKKD- 141
Query: 131 PGALDDAAVTEALELHKIKNRQWAIF-KTSAIKGEGLFEGL 170
LD LE + +F +TSA+ GE + E
Sbjct: 142 ---LDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 179
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 23/164 (14%)
Query: 13 FGN--KEARILVLGLDNAGKTTILYRLQMGEVVSTI-PTIGFNVET----VQYNNIKFQV 65
FGN ++ +++ LG + GKT+++ R +T TIG + + ++ ++ Q+
Sbjct: 8 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 67
Query: 66 WDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGA 119
WD GQ R Y ++ + V D ++T + FH + E
Sbjct: 68 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNT-------NSFHQTSKWIDDVRTERGSDV 120
Query: 120 VVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKG 163
++++ NK DL D V+ K K +TSA G
Sbjct: 121 IIMLVGNKTDLS---DKRQVSTEEGERKAKELNVMFIETSAKAG 161
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 18/123 (14%)
Query: 19 RILVLGLDNAGKTTILY-----RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTS 73
+ +++G GK+ +L R Q ++ G + T+ IK Q+WD GQ S
Sbjct: 12 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 71
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI---LEEEELRG---AVVLIFANK 127
R R Y+ + V D + +D F+ + LE+ V+++ NK
Sbjct: 72 FRSITRSYYRGAAGALLVYD-------ITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 124
Query: 128 QDL 130
DL
Sbjct: 125 SDL 127
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 12/125 (9%)
Query: 19 RILVLGLDNAGKTTILY-----RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTS 73
+ +++G GK+ +L R Q ++ G + + IK Q+WD GQ S
Sbjct: 23 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGA---VVLIFANKQDL 130
R R Y+ + V D + E + + LE+ + V+++ NK DL
Sbjct: 83 FRSITRSYYRGAAGALLVYDITRRETF----NHLTSWLEDARQHSSSNMVIMLIGNKSDL 138
Query: 131 PGALD 135
D
Sbjct: 139 ESRRD 143
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 14/165 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYNN----IKFQVWDLGGQTS 73
+++++G GKTT + R GE +PT+G V + ++ IKF VWD GQ
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPG 132
Y+ Q I + D T R+ +H L +VL NK D+
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIVLC-GNKVDI-- 126
Query: 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
D +++ H+ KN Q+ + SA + WL+ L
Sbjct: 127 -KDRKVKAKSIVFHRKKNLQY--YDISAKSNYNFEKPFLWLARKL 168
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 20/124 (16%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEV-VSTIPTIG--FNVETVQYN--NIKFQVWDLGGQTS 73
+++++G GK+ +L R E + + TIG F ++Q + IK Q+WD GQ
Sbjct: 22 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 81
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEE--EELR-----GAVVLIFAN 126
R Y+ + V D IAK + +E +ELR V+++ N
Sbjct: 82 YRAITSAYYRGAVGALLVYD--------IAKHLTYENVERWLKELRDHADSNIVIMLVGN 133
Query: 127 KQDL 130
K DL
Sbjct: 134 KSDL 137
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 20/124 (16%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEV-VSTIPTIG--FNVETVQYN--NIKFQVWDLGGQTS 73
+++++G GK+ +L R E + + TIG F ++Q + IK Q+WD GQ
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 90
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEE--EELR-----GAVVLIFAN 126
R Y+ + V D IAK + +E +ELR V+++ N
Sbjct: 91 YRAITSAYYRGAVGALLVYD--------IAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 127 KQDL 130
K DL
Sbjct: 143 KSDL 146
>pdb|2Q3F|A Chain A, X-Ray Crystal Structure Of Putative Human Ras-Related Gtp
Binding D In Complex With Gmppnp
pdb|2Q3F|B Chain B, X-Ray Crystal Structure Of Putative Human Ras-Related Gtp
Binding D In Complex With Gmppnp
Length = 181
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 10/149 (6%)
Query: 14 GNKEARILVLGLDNAGKTTI----LYRLQMGEVVSTIPTIGFNVETVQYNN-IKFQVWDL 68
G + RIL+ GL +GK++I ++ E + T E V ++ + FQ+WD
Sbjct: 1 GEVKPRILLXGLRRSGKSSIQKVVFHKXSPNETLFLESTNKICREDVSNSSFVNFQIWDF 60
Query: 69 GGQTSI-RPY--WRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFA 125
GQ P + F T A+I+V+DS D +A+ + +F
Sbjct: 61 PGQIDFFDPTFDYEXIFRGTGALIFVIDSQDDYXEALARLHLTVTRAYKVNTDINFEVFI 120
Query: 126 NKQDLPGALDDAAVTEALELHKIKNRQWA 154
+K D G DD + ++H+ N A
Sbjct: 121 HKVD--GLSDDHKIETQRDIHQRANDDLA 147
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 18/170 (10%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYN------------NIKF 63
++L LG GKTT LYR + I T+G F + V Y+ +
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 64 QVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLI 123
Q+WD G R +F + + D + + + ++ + +++
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 124 FANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173
NK DLP D V E + F+TSA G+ + + ++ L
Sbjct: 133 IGNKADLP---DQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETL 179
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 18/170 (10%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYN------------NIKF 63
++L LG GKTT LYR + I T+G F + V Y+ +
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 64 QVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLI 123
Q+WD G R +F + + D + + + ++ + +++
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 124 FANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173
NK DLP D V E + F+TSA G+ + + ++ L
Sbjct: 133 IGNKADLP---DQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETL 179
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIP-TIGFNVET----VQYNNIKFQVWDLGGQTS 73
+ +++G GK+ +L++ + ++ P TIG T V IK Q+WD GQ
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 74 IRPYWRCYFPNTQAIIYVVD 93
R R Y+ + V D
Sbjct: 77 FRAVTRSYYRGAAGALMVYD 96
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 23/164 (14%)
Query: 19 RILVLGLDNAGKTTILYR-LQMGEVVSTIPTIGF----NVETVQYNNIKFQVWDLGGQTS 73
+ LV+G GK+ +L++ ++ + TIG + V +K Q+WD GQ
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI---LEEEEL---RGAVVLIFANK 127
R R Y+ + V D + +++ ++A+ L + + + V+++ NK
Sbjct: 72 FRSVTRSYYRGAAGALLVYD-------ITSRETYNALTNWLTDARMLASQNIVIILCGNK 124
Query: 128 QDLPGALDDAAVTEALELHKIKNRQWAIF-KTSAIKGEGLFEGL 170
+DL D VT LE + +F +TSA+ GE + E
Sbjct: 125 KDLDA---DREVT-FLEASRFAQENELMFLETSALTGENVEEAF 164
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIP-TIGFNVET----VQYNNIKFQVWDLGGQTS 73
+ +++G GK+ +L++ + ++ P TIG T V IK Q+WD GQ
Sbjct: 32 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGR 91
Query: 74 IRPYWRCYFPNTQAIIYVVD 93
R R Y+ + V D
Sbjct: 92 FRAVTRSYYRGAAGALMVYD 111
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 23/164 (14%)
Query: 19 RILVLGLDNAGKTTILYR-LQMGEVVSTIPTIGF----NVETVQYNNIKFQVWDLGGQTS 73
+ LV+G GK+ +L++ ++ + TIG + V +K Q+WD GQ
Sbjct: 13 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 72
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI---LEEEELRGA---VVLIFANK 127
R R Y+ + V D + +++ ++A+ L + + + V+++ NK
Sbjct: 73 FRSVTRSYYRGAAGALLVYD-------ITSRETYNALTNWLTDARMLASQNIVIILCGNK 125
Query: 128 QDLPGALDDAAVTEALELHKIKNRQWAIF-KTSAIKGEGLFEGL 170
+DL D VT LE + +F +TSA+ GE + E
Sbjct: 126 KDLDA---DREVT-FLEASRFAQENELMFLETSALTGEDVEEAF 165
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 32/168 (19%)
Query: 15 NKEARILVLGLDNAGKTTILYRL--QMGEVVSTIPTIGFNV--ETVQYNNIKFQVWDLGG 70
N+ R++++G N GK+T+L RL + +V+ IP +V E + I F++ D G
Sbjct: 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAG 300
Query: 71 QTSIRP--YWRCYFPNT-------QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVV 121
S R T +++V+D+S +E IL E ++
Sbjct: 301 VRSETNDLVERLGIERTLQEIEKADIVLFVLDASSP-----LDEEDRKIL--ERIKNKRY 353
Query: 122 LIFANKQDLPGALDDAAVTEALELHKIKNR---QWAIFKTSAIKGEGL 166
L+ NK D V E + +IKN+ + K SA+KGEGL
Sbjct: 354 LVVINKVD---------VVEKINEEEIKNKLGTDRHMVKISALKGEGL 392
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 16/151 (10%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVV----STIPTIGFNVETV--QYNNIKFQVWDLGGQT 72
+I ++G GKTT + R+ G +T+ + V + Q N IKF VWD GQ
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSD---TERLVIAKDEFHAILEEEELRGAVVLIFANKQD 129
Y+ I D + + L EF A++ E A +++ ANK D
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE----APIVVCANKID 128
Query: 130 LPGALDDAAVTEALELHKIKNRQWAIFKTSA 160
+ + +++ L + +K + + F+ SA
Sbjct: 129 IK---NRQKISKKLVMEVLKGKNYEYFEISA 156
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 20/124 (16%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEV-VSTIPTIG--FNVETVQYN--NIKFQVWDLGGQTS 73
+++++G GK+ +L R E + + TIG F ++Q + IK Q+WD GQ
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEE--EELR-----GAVVLIFAN 126
R Y+ + V D IAK + +E +ELR V+++ N
Sbjct: 67 YRRITSAYYRGAVGALLVYD--------IAKHLTYENVERWLKELRDHADSNIVIMLVGN 118
Query: 127 KQDL 130
K DL
Sbjct: 119 KSDL 122
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETV-QYNNIKF--QVWDLG 69
G K +I+V+G GKT +L GE+ + +PT+ N V +Y N +F +WD
Sbjct: 19 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTA 78
Query: 70 GQTS---IRP 76
GQ +RP
Sbjct: 79 GQEEYDRLRP 88
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETV-QYNNIKF--QVWDLG 69
G K +I+V+G GKT +L GE+ + +PT+ N V +Y N +F +WD
Sbjct: 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTA 79
Query: 70 GQTS---IRP 76
GQ +RP
Sbjct: 80 GQEEYDRLRP 89
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 14/165 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYNN----IKFQVWDLGGQTS 73
+++++G GKTT + R GE + T+G V + ++ IKF VWD GQ
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPG 132
Y+ Q I + D T R+ +H L +VL NK D+
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIVLC-GNKVDIK- 127
Query: 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
D +++ H+ KN Q+ + SA + WL+ L
Sbjct: 128 --DRKVKAKSIVFHRKKNLQY--YDISAKSNYNFEKPFLWLARKL 168
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 65/165 (39%), Gaps = 14/165 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETV----QYNNIKFQVWDLGGQTS 73
+++++G GKTT + R GE I TIG V + + IKF VWD G
Sbjct: 7 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 66
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPG 132
Y+ N Q I + D T R+ +H L +VL NK D+
Sbjct: 67 FGGLRDGYYINAQCAIIMFDV--TSRITYKNVPNWHRDLVRVCENIPIVLC-GNKVDVK- 122
Query: 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
+ + + H+ KN Q+ + SA + WL+ L
Sbjct: 123 --ERKVKAKTITFHRKKNLQY--YDISAKSNYNFEKPFLWLARKL 163
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 20/161 (12%)
Query: 10 SSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTI-PTIGFNVET----VQYNNIKFQ 64
SSLF +I++LG GK++++ R + S + TIG V + + Q
Sbjct: 9 SSLF-----KIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQ 63
Query: 65 VWDLGGQTSIR----PYWRCYFPNTQAIIYVVDSSDT-ERLVIAKDEFHAILEEEELRGA 119
+WD GQ R P++R + + + VD S + + L K EF + +E
Sbjct: 64 IWDTAGQERFRSLRTPFYRG--SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 121
Query: 120 VVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160
+I NK D+ + TE + N + F+TSA
Sbjct: 122 PFVILGNKTDIK---ERQVSTEEAQAWCKDNGDYPYFETSA 159
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 10/122 (8%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTI-PTIGFNVET----VQYNNIKFQVWDLGG 70
++ +++ LG + GKT+++ R +T TIG + + ++ I+ Q+WD G
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 64
Query: 71 QTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGA--VVLIFANKQ 128
Q R Y ++ A + V D ++ + E RG+ ++++ NK
Sbjct: 65 QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE---RGSDVIIMLVGNKT 121
Query: 129 DL 130
DL
Sbjct: 122 DL 123
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 14/165 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYNN----IKFQVWDLGGQTS 73
+++++G GKTT + R GE + T+G V + ++ IKF VWD GQ
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPG 132
Y+ Q I + D T R+ +H L +VL NK D+
Sbjct: 65 FGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIVLC-GNKVDIK- 120
Query: 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
D +++ H+ KN Q+ + SA + WL+ L
Sbjct: 121 --DRKVKAKSIVFHRKKNLQY--YDISAKSNYNFEKPFLWLARKL 161
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 65/165 (39%), Gaps = 14/165 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETV----QYNNIKFQVWDLGGQTS 73
+++++G GKTT + R GE I TIG V + + IKF VWD G
Sbjct: 6 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 65
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPG 132
Y+ N Q I + D T R+ +H L +VL NK D+
Sbjct: 66 FGGLRDGYYINAQCAIIMFDV--TSRITYKNVPNWHRDLVRVCENIPIVLC-GNKVDVK- 121
Query: 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
+ + + H+ KN Q+ + SA + WL+ L
Sbjct: 122 --ERKVKAKTITFHRKKNLQY--YDISAKSNYNFEKPFLWLARKL 162
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVST--IPTIGFNVETVQYNNIK----------- 62
+E ++ ++G AGKT++L +L +GE T G NV T Q NIK
Sbjct: 40 QEIKVHLIGDGMAGKTSLLKQL-IGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98
Query: 63 -FQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94
F WD GGQ + + + + + ++DS
Sbjct: 99 LFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDS 131
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space
Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1)
Space Group
Length = 168
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIP-TIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+++V+G GK++++ R G TIG F +Q N+ ++ +WD GQ
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTE 98
+ Y+ QA + V ++D E
Sbjct: 67 FDAITKAYYRGAQACVLVFSTTDRE 91
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 16 KEARILVLGLDNAGKT---TILYRLQMGEVVSTIPTIGFNVETVQYN---NIKFQVWDLG 69
++ +I+VLG +GKT T + G+ + F + + N+ Q+WD+G
Sbjct: 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIG 64
Query: 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI--LEEEELRGAVVLIFANK 127
GQT Y Q ++ V D ++ + +D + + + EE +V + NK
Sbjct: 65 GQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNK 124
Query: 128 QDL 130
DL
Sbjct: 125 IDL 127
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQ-YNN---IKFQVWDLGGQTS 73
+++++G GKTT + R GE I TIG V + Y N IKF VWD G
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 73
Query: 74 IRPYWRCYFPNTQAIIYVVD 93
Y+ N Q I + D
Sbjct: 74 FGGLRDGYYINAQCAIIMFD 93
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 14/165 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYNN----IKFQVWDLGGQTS 73
+++++G GKTT + R GE + T+G V + ++ IKF VWD GQ
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPG 132
Y+ Q I + D T R+ +H L +VL NK D+
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIVLC-GNKVDIK- 127
Query: 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
D +++ H+ KN Q+ + SA + WL+ L
Sbjct: 128 --DRKVKAKSIVFHRKKNLQY--YDISAKSNYNFEKPFLWLARKL 168
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 14/165 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYNN----IKFQVWDLGGQTS 73
+++++G GKTT + R GE + T+G V + ++ IKF VWD GQ
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPG 132
Y+ Q I + D T R+ +H L +VL NK D+
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIVLC-GNKVDIK- 127
Query: 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
D +++ H+ KN Q+ + SA + WL+ L
Sbjct: 128 --DRKVKAKSIVFHRKKNLQY--YDISAKSNYNFEKPFLWLARKL 168
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 14/165 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYNN----IKFQVWDLGGQTS 73
+++++G GKTT + R GE + T+G V + ++ IKF VWD GQ
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPG 132
Y+ Q I + D T R+ +H L +VL NK D+
Sbjct: 77 FGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIVLC-GNKVDI-- 131
Query: 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
D +++ H+ KN Q+ + SA + WL+ L
Sbjct: 132 -KDRKVKAKSIVFHRKKNLQY--YDISAKSNYNFEKPFLWLARKL 173
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQM----GEVVSTIPTIGFNVETVQYNN--IKFQVWDLGGQT 72
+++ LG GKT+I+ R STI I F +T+ + ++ Q+WD GQ
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIG-IDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
R Y ++ A I V D ++ + IL E + ++ + NK DL
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDVIIALVGNKTDL 118
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 14/165 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYNN----IKFQVWDLGGQTS 73
+++++G GKTT + R GE + T+G V + ++ IKF VWD GQ
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPG 132
Y+ Q I + D T R+ +H L +VL NK D+
Sbjct: 72 FGGLEDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIVLC-GNKVDIK- 127
Query: 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
D +++ H+ KN Q+ + SA + WL+ L
Sbjct: 128 --DRKVKAKSIVFHRKKNLQY--YDISAKSNYNFEKPFLWLARKL 168
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 14/165 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYNN----IKFQVWDLGGQTS 73
+++++G GKTT + R GE + T+G V + ++ IKF VWD GQ
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPG 132
Y+ Q I + D T R+ +H L +VL NK D+
Sbjct: 77 FGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIVLC-GNKVDI-- 131
Query: 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
D +++ H+ KN Q+ + SA + WL+ L
Sbjct: 132 -KDRKVKAKSIVFHRKKNLQY--YDISAKSNYNFEKPFLWLARKL 173
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 33.5 bits (75), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 23/164 (14%)
Query: 19 RILVLGLDNAGKTTILYR-LQMGEVVSTIPTIGF----NVETVQYNNIKFQVWDLGGQTS 73
+ LV+G GK+ +L++ ++ + TIG + V +K Q+WD G
Sbjct: 10 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLER 69
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI---LEEEELRGA---VVLIFANK 127
R R Y+ + V D + +++ ++A+ L + + + V+++ NK
Sbjct: 70 FRSVTRSYYRGAAGALLVYD-------ITSRETYNALTNWLTDARMLASQNIVIILCGNK 122
Query: 128 QDLPGALDDAAVTEALELHKIKNRQWAIF-KTSAIKGEGLFEGL 170
+DL D VT LE + +F +TSA+ GE + E
Sbjct: 123 KDLDA---DREVT-FLEASRFAQENELMFLETSALTGEDVEEAF 162
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 33.5 bits (75), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 14/165 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYNN----IKFQVWDLGGQTS 73
+++++G GKTT + R GE + T+G V + ++ IKF VWD GQ
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPG 132
Y+ Q I + D T R+ +H L +VL NK D+
Sbjct: 72 YGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIVLC-GNKVDIK- 127
Query: 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
D +++ H+ KN Q+ + SA + WL+ L
Sbjct: 128 --DRKVKAKSIVFHRKKNLQY--YDISAKSNYNFEKPFLWLARKL 168
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 14/165 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYNN----IKFQVWDLGGQTS 73
+++++G GKTT + R GE + T+G V + ++ IKF VWD GQ
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPG 132
Y+ Q I D T R+ +H L +VL NK D+
Sbjct: 72 FGGLRDGYYIQAQCAIIXFDV--TSRVTYKNVPNWHRDLVRVCENIPIVLC-GNKVDIK- 127
Query: 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
D +++ H+ KN Q+ + SA + WL+ L
Sbjct: 128 --DRKVKAKSIVFHRKKNLQY--YDISAKSNYNFEKPFLWLARKL 168
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 28/165 (16%)
Query: 10 SSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN--------- 60
SSLF ++++LG GK++++ R V + T F+ V++ N
Sbjct: 7 SSLF-----KVILLGDGGVGKSSLMNRY----VTNKFDTQLFHTIGVEFLNKDLEVDGHF 57
Query: 61 IKFQVWDLGGQTSIR----PYWRCYFPNTQAIIYVVDSSDT-ERLVIAKDEFHAILEEEE 115
+ Q+WD GQ R P++R + + + VD S + + L K EF + +E
Sbjct: 58 VTMQIWDTAGQERFRSLRTPFYRG--SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKE 115
Query: 116 LRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160
+I NK D+ + TE + N + F+TSA
Sbjct: 116 PESFPFVILGNKIDIS---ERQVSTEEAQAWCRDNGDYPYFETSA 157
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 20/131 (15%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVET----VQYNNIKFQVWDLGGQ 71
K I ++G N GK+TI L GE V G VE +YN KF+V DL G
Sbjct: 2 KSYEIALIGNPNVGKSTIFNALT-GENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
Query: 72 TSIRP------YWRCYFPNTQA--IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLI 123
S+ R Y N + ++ +VD++ ER + L+ E+ GA +L+
Sbjct: 61 YSLTANSIDEIIARDYIINEKPDLVVNIVDATALER------NLYLTLQLMEM-GANLLL 113
Query: 124 FANKQDLPGAL 134
NK DL +L
Sbjct: 114 ALNKMDLAKSL 124
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 33.1 bits (74), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 20/131 (15%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVET----VQYNNIKFQVWDLGGQ 71
K I ++G N GK+TI L GE V G VE +YN KF+V DL G
Sbjct: 2 KSYEIALIGNPNVGKSTIFNALT-GENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
Query: 72 TSIRP------YWRCYFPNTQA--IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLI 123
S+ R Y N + ++ +VD++ ER + L+ E+ GA +L+
Sbjct: 61 YSLTANSIDEIIARDYIINEKPDLVVNIVDATALER------NLYLTLQLMEM-GANLLL 113
Query: 124 FANKQDLPGAL 134
NK DL +L
Sbjct: 114 ALNKMDLAKSL 124
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 33.1 bits (74), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 28/165 (16%)
Query: 10 SSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN--------- 60
SSLF ++++LG GK++++ R V + T F+ V++ N
Sbjct: 5 SSLF-----KVILLGDGGVGKSSLMNRY----VTNKFDTQLFHTIGVEFLNKDLEVDGHF 55
Query: 61 IKFQVWDLGGQTSIR----PYWRCYFPNTQAIIYVVDSSDT-ERLVIAKDEFHAILEEEE 115
+ Q+WD GQ R P++R + + + VD S + + L K EF + +E
Sbjct: 56 VTMQIWDTAGQERFRSLRTPFYRG--SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKE 113
Query: 116 LRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160
+I NK D+ + TE + N + F+TSA
Sbjct: 114 PESFPFVILGNKIDIS---ERQVSTEEAQAWCRDNGDYPYFETSA 155
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 20/131 (15%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVET----VQYNNIKFQVWDLGGQ 71
K I ++G N GK+TI L GE V G VE +YN KF+V DL G
Sbjct: 6 KSYEIALIGNPNVGKSTIFNALT-GENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 64
Query: 72 TSIRP------YWRCYFPNTQA--IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLI 123
S+ R Y N + ++ +VD++ ER + L+ E+ GA +L+
Sbjct: 65 YSLTANSIDEIIARDYIINEKPDLVVNIVDATALER------NLYLTLQLMEM-GANLLL 117
Query: 124 FANKQDLPGAL 134
NK DL +L
Sbjct: 118 ALNKMDLAKSL 128
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 66/165 (40%), Gaps = 14/165 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYNN----IKFQVWDLGGQTS 73
+++++G GKTT + R GE + T+G V + ++ IKF VWD G
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 73
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPG 132
Y+ Q I + D T R+ +H L +VL NK D+
Sbjct: 74 FGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIVLC-GNKVDIK- 129
Query: 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
D +++ H+ KN Q+ + SA + WL+ L
Sbjct: 130 --DRKVKAKSIVFHRKKNLQY--YDISAKSNYNFEKPFLWLARKL 170
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 66/165 (40%), Gaps = 14/165 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYNN----IKFQVWDLGGQTS 73
+++++G GKTT + R GE + T+G V + ++ IKF VWD G
Sbjct: 8 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 67
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPG 132
Y+ Q I + D T R+ +H L +VL NK D+
Sbjct: 68 FGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIVLC-GNKVDIK- 123
Query: 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
D +++ H+ KN Q+ + SA + WL+ L
Sbjct: 124 --DRKVKAKSIVFHRKKNLQY--YDISAKSNYNFEKPFLWLARKL 164
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 12/121 (9%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYN----NIKFQVWDLGGQTS 73
++++LG GKT+++ R + I T+G + T + N + +WD GQ
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKD---EFHAILEEEELRGAVVLIFANKQDL 130
Y+ ++ I V D +D + K+ E +L E + I NK DL
Sbjct: 68 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE----ICLCIVGNKIDL 123
Query: 131 P 131
Sbjct: 124 E 124
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTI-PTIGFNVET----VQYNNIKFQVWDLGGQTS 73
+++ LG + GKT+++ R +T TIG + + ++ ++ Q+WD GQ
Sbjct: 3 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGA--VVLIFANKQDLP 131
R Y ++ + V D ++ + E RG+ ++++ NK DL
Sbjct: 63 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE---RGSDVIIMLVGNKTDLA 119
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTI-PTIGFNVET----VQYNNIKFQVWDLGGQTS 73
+++ LG + GKT+++ R +T TIG + + ++ ++ Q+WD GQ
Sbjct: 4 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGA--VVLIFANKQDLP 131
R Y ++ + V D ++ + E RG+ ++++ NK DL
Sbjct: 64 FRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTE---RGSDVIIMLVGNKTDLA 120
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 20/131 (15%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVET----VQYNNIKFQVWDLGGQ 71
K I ++G N GK+TI L GE V G VE +YN KF+V DL G
Sbjct: 3 KSYEIALIGNPNVGKSTIFNAL-TGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 61
Query: 72 TSIRP------YWRCYFPNTQA--IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLI 123
S+ R Y N + ++ +VD++ ER + L+ E GA +L+
Sbjct: 62 YSLTANSIDEIIARDYIINEKPDLVVNIVDATALER------NLYLTLQLXE-XGANLLL 114
Query: 124 FANKQDLPGAL 134
NK DL +L
Sbjct: 115 ALNKXDLAKSL 125
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 62 KFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEE-----L 116
+F ++ + GQ + I++V DS+ RL + + E L
Sbjct: 75 RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSA-PNRLRANAESMRNMRENLAEYGLTL 133
Query: 117 RGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174
++I NK+DLP AL V ++ ++ + + A +G+G+FE L +S
Sbjct: 134 DDVPIVIQVNKRDLPDALPVEMVRAVVDPEG----KFPVLEAVATEGKGVFETLKEVS 187
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST-IPTI------GFNVETVQYNNIKFQVWD 67
N + +I+V+G GKT +L+ +PT+ F ++T I+ +WD
Sbjct: 21 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDT---QRIELSLWD 77
Query: 68 LGGQT---SIRPYWRCYFPNTQAIIYVVDSSDTERL 100
G ++RP +P++ A++ D S E L
Sbjct: 78 TSGSPYYDNVRPL---SYPDSDAVLICFDISRPETL 110
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST-IPTI------GFNVETVQYNNIKFQVWD 67
N + +I+V+G GKT +L+ +PT+ F ++T I+ +WD
Sbjct: 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDT---QRIELSLWD 82
Query: 68 LGGQT---SIRPYWRCYFPNTQAIIYVVDSSDTERL 100
G ++RP +P++ A++ D S E L
Sbjct: 83 TSGSPYYDNVRPL---SYPDSDAVLICFDISRPETL 115
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST-IPTI------GFNVETVQYNNIKFQVWD 67
N + +I+V+G GKT +L+ +PT+ F ++T I+ +WD
Sbjct: 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDT---QRIELSLWD 61
Query: 68 LGGQT---SIRPYWRCYFPNTQAIIYVVDSSDTERL 100
G ++RP +P++ A++ D S E L
Sbjct: 62 TSGSPYYDNVRPL---SYPDSDAVLICFDISRPETL 94
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 66/165 (40%), Gaps = 14/165 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYNN----IKFQVWDLGGQTS 73
+++++G GKTT + R GE + T+G V + ++ IKF VWD G
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 71
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPG 132
Y+ Q I + D T R+ +H L +VL NK D+
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDV--TSRVTYKNVPNWHRDLVRVCENIPIVLC-GNKVDIK- 127
Query: 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
D +++ H+ KN Q+ + SA + WL+ L
Sbjct: 128 --DRKVKAKSIVFHRKKNLQY--YDISAKSNYNFEKPFLWLARKL 168
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 13/140 (9%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTI-PTIG--FNVETVQYNNIK---FQVWDLGGQT 72
++++LG GKT++++R + TIG F + V + K QVWD GQ
Sbjct: 10 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69
Query: 73 SIRPYWRCYFPNTQAIIYVVD---SSDTERLVIAKDEF--HAILEEEELRGAVVLIFANK 127
+ ++ + V D +S E + +DEF HA + E V+L NK
Sbjct: 70 RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVIL--GNK 127
Query: 128 QDLPGALDDAAVTEALELHK 147
D + + A EL K
Sbjct: 128 IDAEESKKIVSEKSAQELAK 147
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 8/117 (6%)
Query: 62 KFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEE----LR 117
+F ++ + GQ + I++V DS+ A+ + E L
Sbjct: 75 RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESXRNXRENLAEYGLTLD 134
Query: 118 GAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174
++I NK+DLP AL V ++ ++ + + A +G+G+FE L +S
Sbjct: 135 DVPIVIQVNKRDLPDALPVEXVRAVVDPEG----KFPVLEAVATEGKGVFETLKEVS 187
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 31/54 (57%)
Query: 63 FQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEEL 116
++++D+GGQ + R W F A+I+ S+ ++ + ++ + ++E +EL
Sbjct: 185 YRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKEL 238
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 12/53 (22%)
Query: 19 RILVLGLDNAGKTTILYRLQM--------GEVVSTIPTIGFNVETVQYNNIKF 63
++L+LG +GK+TI ++++ GE+ S +P I NV Y IK
Sbjct: 11 KLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANV----YQTIKL 59
>pdb|4EFI|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase From Burkholderia Xenovorans Lb400
Length = 354
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 134 LDDAAVTEALELHKIKNRQWAIFKTSA-----IKGEGLFEGLDWLSNTLKSI 180
D +AV + +++ + R+WA +TSA GE L GL W ++++ ++
Sbjct: 40 FDASAVRDVVKMIGVNRRRWADAQTSAGDLCRKAGEKLLAGLGWQADSIDAL 91
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 8 LFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTI 46
L L ++ AR+L++G+ N GK+TI+ +L+ G+ S++
Sbjct: 90 LLKKLSFDRLARVLIVGVPNTGKSTIINKLK-GKRASSV 127
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAK 104
NIKF +WD GQ Y+ I V D S++ L AK
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK 136
>pdb|1NRJ|B Chain B, Signal Recognition Particle Receptor Beta-Subunit In
Complex With The Srx Domain From The Alpha-Subunit
Length = 218
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 15/171 (8%)
Query: 17 EARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR- 75
+ I++ G N+GKT++L L V T+ + + Y+ + D G +R
Sbjct: 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSAADYDGSGVTLVDFPGHVKLRY 70
Query: 76 ---PYWRCYFPNTQAIIYVVDSS-DTERLVIAKD---EFHAILEEEELRGAVVLIFANKQ 128
Y + + +I++VDS+ D ++L + + +I E G +LI NK
Sbjct: 71 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS 130
Query: 129 DLPGALDDAAVTEAL--ELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
+L A + + +AL E+ K+ R+ K S + E D+ NTL
Sbjct: 131 ELFTARPPSKIKDALESEIQKVIERR----KKSLNEVERKINEEDYAENTL 177
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 12/120 (10%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYN----NIKFQVWDLGGQTS 73
++++LG GKT+++ R + I T+ + T + N + +WD GQ
Sbjct: 22 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 81
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKD---EFHAILEEEELRGAVVLIFANKQDL 130
Y+ ++ I V D +D + K+ E +L E + I NK DL
Sbjct: 82 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE----ICLCIVGNKIDL 137
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 12/121 (9%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYN----NIKFQVWDLGGQTS 73
++++LG GKT+++ R + I T+ + T + N + +WD GQ
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKD---EFHAILEEEELRGAVVLIFANKQDL 130
Y+ ++ I V D +D + K+ E +L E + I NK DL
Sbjct: 68 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE----ICLCIVGNKIDL 123
Query: 131 P 131
Sbjct: 124 E 124
>pdb|2GED|A Chain A, Signal Recognition Particle Receptor Beta-subunit In
Nucleotide-free Dimerized Form
pdb|2GED|B Chain B, Signal Recognition Particle Receptor Beta-subunit In
Nucleotide-free Dimerized Form
Length = 193
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 17 EARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR- 75
+ I++ G N+GKT++L L V T+ + + Y+ + D G +R
Sbjct: 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSAADYDGSGVTLVDFPGHVKLRY 106
Query: 76 ---PYWRCYFPNTQAIIYVVDSS-DTERLVIAKD---EFHAILEEEELRGAVVLIFANKQ 128
Y + + +I++VDS+ D ++L + + +I E G +LI NK
Sbjct: 107 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS 166
Query: 129 DLPGALDDAAVTEAL--ELHKIKNRQ 152
+L A + + +AL E+ K+ R+
Sbjct: 167 ELFTARPPSKIKDALESEIQKVIERR 192
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 5 FTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVST 45
F R+ + + R L++G+ N GK+T++ RL + T
Sbjct: 108 FDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKT 148
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 100 LVIAKDEFHAILEE--EELRGAVVLIFANKQDLPGAL-DDAAVTEALELHKIKNRQWAIF 156
L + +D +H I EE ++L G ++ GAL D+ AVTEA++ K+K +F
Sbjct: 208 LPLTRDTYHIINEERVKKLEGKYLVNIGR-----GALVDEKAVTEAIKQGKLKGYATDVF 262
Query: 157 KTSAIKGEGLFE 168
+ ++ LF+
Sbjct: 263 EKEPVREHELFK 274
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 14/159 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQT-- 72
++++LG GKT++ ++ GE T+ + T+ + + D GQ
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEY 85
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQDLP 131
SI PY + ++Y V S + +++ + + L E + V V++ NK DL
Sbjct: 86 SILPYSFIIGVHGYVLVYSVTSLHSFQVI---ESLYQKLHEGHGKTRVPVVLVGNKADLS 142
Query: 132 GALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170
+ +A+E K+ A F S+ + L +G+
Sbjct: 143 PERE----VQAVEGKKLAESWGATFMESSARENQLTQGI 177
>pdb|2AX4|A Chain A, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|B Chain B, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|C Chain C, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|D Chain D, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
Length = 198
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY---NNIKFQVWD 67
G + + + GL AGKTTI + L+ V IP + + V++ N+ F D
Sbjct: 19 GFRGCTVWLTGLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVRHGLNRNLGFSPGD 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,103,977
Number of Sequences: 62578
Number of extensions: 195598
Number of successful extensions: 765
Number of sequences better than 100.0: 234
Number of HSP's better than 100.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 516
Number of HSP's gapped (non-prelim): 277
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)