Query 030149
Match_columns 182
No_of_seqs 150 out of 1462
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 09:17:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00223 ADP-ribosylation fact 100.0 7.7E-39 1.7E-43 214.2 20.0 180 1-180 1-180 (181)
2 PTZ00133 ADP-ribosylation fact 100.0 1.8E-38 3.9E-43 212.7 20.1 180 1-180 1-180 (182)
3 smart00177 ARF ARF-like small 100.0 9.2E-37 2E-41 203.4 19.5 170 9-178 5-174 (175)
4 cd04149 Arf6 Arf6 subfamily. 100.0 8.6E-37 1.9E-41 202.2 18.1 164 12-175 4-167 (168)
5 KOG0084 GTPase Rab1/YPT1, smal 100.0 6.1E-37 1.3E-41 197.8 13.3 162 15-180 7-174 (205)
6 PF00025 Arf: ADP-ribosylation 100.0 3.4E-35 7.4E-40 195.5 21.0 173 5-177 1-175 (175)
7 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 2.5E-36 5.5E-41 194.5 14.6 165 13-180 18-187 (221)
8 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.5E-35 3.3E-40 194.7 18.3 158 18-175 1-158 (159)
9 KOG0092 GTPase Rab5/YPT51 and 100.0 1.8E-36 4E-41 194.9 13.5 162 15-180 3-169 (200)
10 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 3.5E-35 7.5E-40 195.7 19.0 171 5-175 3-173 (174)
11 cd04154 Arl2 Arl2 subfamily. 100.0 6.9E-35 1.5E-39 194.2 18.3 163 13-175 10-172 (173)
12 cd04158 ARD1 ARD1 subfamily. 100.0 2.2E-34 4.9E-39 191.0 19.3 161 19-179 1-162 (169)
13 smart00178 SAR Sar1p-like memb 100.0 1.6E-34 3.4E-39 194.1 18.7 172 4-176 3-183 (184)
14 KOG0070 GTP-binding ADP-ribosy 100.0 1.2E-34 2.5E-39 186.1 15.6 180 1-180 1-180 (181)
15 cd04121 Rab40 Rab40 subfamily. 100.0 1.7E-34 3.7E-39 193.8 15.3 160 15-181 4-170 (189)
16 cd00879 Sar1 Sar1 subfamily. 100.0 7E-34 1.5E-38 192.1 18.3 176 2-177 3-190 (190)
17 cd04120 Rab12 Rab12 subfamily. 100.0 3.5E-34 7.6E-39 194.0 16.1 158 18-179 1-164 (202)
18 cd04151 Arl1 Arl1 subfamily. 100.0 9.1E-34 2E-38 186.2 17.7 157 19-175 1-157 (158)
19 KOG0394 Ras-related GTPase [Ge 100.0 7.1E-35 1.5E-39 186.0 11.7 167 14-180 6-180 (210)
20 cd04126 Rab20 Rab20 subfamily. 100.0 6.6E-34 1.4E-38 194.6 16.0 161 18-179 1-191 (220)
21 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 3.5E-34 7.6E-39 190.4 13.7 161 17-180 2-166 (172)
22 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 3.9E-33 8.5E-38 187.2 18.6 165 16-180 2-172 (183)
23 cd04157 Arl6 Arl6 subfamily. 100.0 2.2E-33 4.9E-38 185.0 17.1 157 19-175 1-161 (162)
24 cd04133 Rop_like Rop subfamily 100.0 6.4E-34 1.4E-38 189.1 14.1 160 18-179 2-174 (176)
25 KOG0078 GTP-binding protein SE 100.0 5.3E-34 1.2E-38 186.7 13.3 162 15-180 10-176 (207)
26 cd00878 Arf_Arl Arf (ADP-ribos 100.0 4.3E-33 9.3E-38 183.0 17.7 157 19-175 1-157 (158)
27 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 7.1E-34 1.5E-38 189.9 13.7 163 14-178 2-180 (182)
28 cd01875 RhoG RhoG subfamily. 100.0 8.5E-34 1.8E-38 191.5 14.0 162 16-179 2-178 (191)
29 KOG0098 GTPase Rab2, small G p 100.0 6.7E-34 1.4E-38 182.0 11.3 162 15-180 4-170 (216)
30 cd04156 ARLTS1 ARLTS1 subfamil 100.0 1E-32 2.2E-37 181.6 17.4 157 19-175 1-159 (160)
31 PTZ00369 Ras-like protein; Pro 100.0 2.7E-33 5.8E-38 189.0 14.9 161 15-180 3-169 (189)
32 cd04122 Rab14 Rab14 subfamily. 100.0 3.4E-33 7.5E-38 184.9 15.0 157 17-179 2-165 (166)
33 cd01874 Cdc42 Cdc42 subfamily. 100.0 3.9E-33 8.4E-38 185.8 15.2 158 18-177 2-174 (175)
34 cd04161 Arl2l1_Arl13_like Arl2 100.0 1E-32 2.2E-37 182.6 17.1 157 19-175 1-166 (167)
35 KOG0073 GTP-binding ADP-ribosy 100.0 1.5E-32 3.4E-37 172.1 16.6 167 14-180 13-180 (185)
36 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 6.4E-33 1.4E-37 184.0 15.8 161 19-180 2-167 (170)
37 KOG0071 GTP-binding ADP-ribosy 100.0 1.9E-32 4E-37 167.5 16.1 179 1-179 1-179 (180)
38 cd04127 Rab27A Rab27a subfamil 100.0 4.1E-33 8.8E-38 186.9 14.5 159 16-179 3-178 (180)
39 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.6E-32 3.6E-37 181.1 17.1 155 19-175 1-163 (164)
40 cd04136 Rap_like Rap-like subf 100.0 4.4E-33 9.5E-38 183.8 14.3 156 18-177 2-162 (163)
41 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4E-32 8.7E-37 184.9 19.3 159 18-180 1-170 (201)
42 cd00877 Ran Ran (Ras-related n 100.0 3.3E-32 7.2E-37 180.0 18.0 155 18-179 1-160 (166)
43 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.9E-32 4.1E-37 183.4 16.9 160 18-180 1-168 (182)
44 cd04131 Rnd Rnd subfamily. Th 100.0 3.9E-33 8.5E-38 186.0 13.3 159 17-177 1-175 (178)
45 cd04175 Rap1 Rap1 subgroup. T 100.0 5.1E-33 1.1E-37 183.7 13.6 158 17-178 1-163 (164)
46 PLN03071 GTP-binding nuclear p 100.0 2.3E-32 4.9E-37 187.9 17.2 157 15-179 11-173 (219)
47 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 6E-33 1.3E-37 190.9 14.2 163 15-179 11-189 (232)
48 cd04119 RJL RJL (RabJ-Like) su 100.0 9.4E-33 2E-37 183.0 14.5 156 18-178 1-167 (168)
49 cd04138 H_N_K_Ras_like H-Ras/N 100.0 2.7E-32 5.9E-37 179.7 16.5 156 17-177 1-161 (162)
50 cd04160 Arfrp1 Arfrp1 subfamil 100.0 4.2E-32 9.2E-37 179.8 17.0 157 19-175 1-166 (167)
51 cd04155 Arl3 Arl3 subfamily. 100.0 9.7E-32 2.1E-36 179.1 18.6 162 14-175 11-172 (173)
52 cd01867 Rab8_Rab10_Rab13_like 100.0 2E-32 4.4E-37 181.3 14.9 158 16-179 2-166 (167)
53 cd01865 Rab3 Rab3 subfamily. 100.0 2.4E-32 5.2E-37 180.7 15.1 156 18-179 2-164 (165)
54 smart00173 RAS Ras subfamily o 100.0 2.1E-32 4.5E-37 180.8 14.2 157 18-179 1-163 (164)
55 cd04111 Rab39 Rab39 subfamily. 100.0 3.2E-32 7E-37 186.3 15.5 160 16-180 1-168 (211)
56 cd04117 Rab15 Rab15 subfamily. 100.0 3.1E-32 6.8E-37 179.4 14.7 154 18-176 1-160 (161)
57 cd04176 Rap2 Rap2 subgroup. T 100.0 2E-32 4.4E-37 180.7 13.7 157 17-177 1-162 (163)
58 KOG0093 GTPase Rab3, small G p 100.0 7.1E-33 1.5E-37 170.7 10.6 162 15-180 19-185 (193)
59 cd04103 Centaurin_gamma Centau 100.0 4.7E-32 1E-36 177.7 15.3 153 18-176 1-157 (158)
60 cd04144 Ras2 Ras2 subfamily. 100.0 1.8E-32 3.8E-37 185.1 13.3 157 19-180 1-165 (190)
61 cd04145 M_R_Ras_like M-Ras/R-R 100.0 3.1E-32 6.8E-37 179.9 14.0 156 17-177 2-163 (164)
62 cd04109 Rab28 Rab28 subfamily. 100.0 5.9E-32 1.3E-36 185.8 15.5 158 18-179 1-167 (215)
63 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 5.3E-32 1.2E-36 185.3 15.0 162 17-179 1-177 (222)
64 cd01871 Rac1_like Rac1-like su 100.0 2.9E-32 6.2E-37 181.5 13.3 158 17-176 1-173 (174)
65 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 8.4E-32 1.8E-36 178.3 15.0 157 17-179 2-165 (166)
66 cd04134 Rho3 Rho3 subfamily. 100.0 5.5E-32 1.2E-36 182.5 14.2 160 18-179 1-175 (189)
67 cd04110 Rab35 Rab35 subfamily. 100.0 9.5E-32 2.1E-36 182.7 15.4 159 15-180 4-169 (199)
68 cd04140 ARHI_like ARHI subfami 100.0 8.5E-32 1.9E-36 178.0 14.7 154 18-176 2-163 (165)
69 KOG0080 GTPase Rab18, small G 100.0 2.3E-32 5E-37 170.9 11.0 162 15-179 9-175 (209)
70 cd04159 Arl10_like Arl10-like 100.0 6E-31 1.3E-35 172.6 17.8 156 20-175 2-158 (159)
71 cd04124 RabL2 RabL2 subfamily. 100.0 3.2E-31 6.8E-36 174.6 16.4 155 18-180 1-160 (161)
72 cd04116 Rab9 Rab9 subfamily. 100.0 4.4E-31 9.5E-36 175.5 17.0 158 15-176 3-169 (170)
73 cd01868 Rab11_like Rab11-like. 100.0 2.3E-31 5E-36 176.0 14.7 156 16-177 2-164 (165)
74 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.7E-31 3.7E-36 177.4 14.1 158 17-178 2-169 (170)
75 cd01864 Rab19 Rab19 subfamily. 100.0 3.4E-31 7.4E-36 175.2 15.4 157 16-177 2-165 (165)
76 cd04125 RabA_like RabA-like su 100.0 3.8E-31 8.3E-36 178.4 15.3 158 18-180 1-164 (188)
77 cd01863 Rab18 Rab18 subfamily. 100.0 1.2E-30 2.6E-35 171.9 17.3 155 18-177 1-161 (161)
78 cd01866 Rab2 Rab2 subfamily. 100.0 4.2E-31 9.1E-36 175.2 15.0 158 16-179 3-167 (168)
79 cd04113 Rab4 Rab4 subfamily. 100.0 2.8E-31 6.1E-36 174.9 14.0 154 18-177 1-161 (161)
80 cd04143 Rhes_like Rhes_like su 100.0 2.3E-30 5E-35 180.3 19.1 156 18-177 1-170 (247)
81 KOG0095 GTPase Rab30, small G 100.0 6.5E-32 1.4E-36 167.1 10.0 159 17-179 7-170 (213)
82 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.4E-31 3.1E-36 174.7 12.1 162 15-180 12-178 (222)
83 cd04142 RRP22 RRP22 subfamily. 100.0 1.3E-30 2.8E-35 176.5 17.3 160 18-180 1-176 (198)
84 cd04112 Rab26 Rab26 subfamily. 100.0 4.8E-31 1E-35 178.2 14.8 157 18-180 1-165 (191)
85 PLN03110 Rab GTPase; Provision 100.0 4.8E-31 1E-35 181.2 14.9 161 15-180 10-176 (216)
86 cd04132 Rho4_like Rho4-like su 100.0 6.7E-31 1.5E-35 177.1 15.0 156 18-180 1-169 (187)
87 cd04118 Rab24 Rab24 subfamily. 100.0 1E-30 2.2E-35 177.1 15.8 161 18-180 1-168 (193)
88 PF00071 Ras: Ras family; Int 100.0 2.4E-31 5.3E-36 175.4 12.4 154 19-178 1-161 (162)
89 PLN03118 Rab family protein; P 100.0 1.1E-30 2.3E-35 179.1 15.9 161 15-180 12-179 (211)
90 smart00176 RAN Ran (Ras-relate 100.0 1.7E-30 3.7E-35 175.7 16.3 150 23-179 1-155 (200)
91 cd04106 Rab23_lke Rab23-like s 100.0 3.9E-31 8.4E-36 174.4 13.0 152 18-176 1-161 (162)
92 cd01861 Rab6 Rab6 subfamily. 100.0 9E-31 2E-35 172.5 14.0 155 18-177 1-161 (161)
93 cd01860 Rab5_related Rab5-rela 100.0 6.1E-30 1.3E-34 168.8 17.9 155 17-177 1-162 (163)
94 cd04135 Tc10 TC10 subfamily. 100.0 1.1E-30 2.3E-35 174.2 14.3 159 18-177 1-173 (174)
95 smart00175 RAB Rab subfamily o 100.0 1.3E-30 2.7E-35 172.2 14.5 156 18-179 1-163 (164)
96 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.1E-30 2.4E-35 172.5 14.0 154 18-177 1-163 (164)
97 smart00174 RHO Rho (Ras homolo 100.0 1.4E-30 2.9E-35 173.7 14.3 157 20-178 1-172 (174)
98 cd04139 RalA_RalB RalA/RalB su 100.0 5.5E-30 1.2E-34 169.1 17.0 157 18-179 1-163 (164)
99 cd01873 RhoBTB RhoBTB subfamil 100.0 9.5E-31 2.1E-35 176.6 13.3 156 17-176 2-194 (195)
100 KOG0075 GTP-binding ADP-ribosy 100.0 9.4E-31 2E-35 161.3 12.0 173 7-180 11-184 (186)
101 cd01862 Rab7 Rab7 subfamily. 100.0 1.3E-29 2.8E-34 168.7 18.5 159 18-180 1-169 (172)
102 cd04177 RSR1 RSR1 subgroup. R 100.0 1.8E-30 4E-35 172.2 14.3 157 18-178 2-164 (168)
103 cd01893 Miro1 Miro1 subfamily. 100.0 5.1E-30 1.1E-34 169.7 16.4 161 18-179 1-165 (166)
104 KOG0086 GTPase Rab4, small G p 100.0 2E-30 4.4E-35 161.0 12.3 160 16-179 8-172 (214)
105 cd04146 RERG_RasL11_like RERG/ 100.0 1.8E-30 3.9E-35 171.7 13.0 155 19-178 1-164 (165)
106 KOG0079 GTP-binding protein H- 100.0 1.6E-31 3.5E-36 164.9 7.0 157 18-179 9-170 (198)
107 cd04130 Wrch_1 Wrch-1 subfamil 100.0 4.7E-30 1E-34 170.9 14.1 156 18-175 1-171 (173)
108 cd04148 RGK RGK subfamily. Th 100.0 7E-30 1.5E-34 175.8 15.3 156 18-179 1-164 (221)
109 cd04147 Ras_dva Ras-dva subfam 100.0 1.4E-29 3.1E-34 172.0 16.3 159 19-178 1-163 (198)
110 PLN03108 Rab family protein; P 100.0 7.2E-30 1.6E-34 174.7 15.0 158 16-179 5-169 (210)
111 cd01892 Miro2 Miro2 subfamily. 100.0 2.2E-29 4.8E-34 167.0 16.8 158 15-179 2-167 (169)
112 cd01870 RhoA_like RhoA-like su 100.0 3.8E-29 8.2E-34 166.9 16.6 159 17-177 1-174 (175)
113 cd04123 Rab21 Rab21 subfamily. 100.0 2E-29 4.4E-34 166.0 14.4 154 18-177 1-161 (162)
114 cd00157 Rho Rho (Ras homology) 100.0 1.8E-29 4E-34 167.7 13.5 157 18-175 1-170 (171)
115 cd04114 Rab30 Rab30 subfamily. 100.0 6.3E-29 1.4E-33 164.9 15.4 158 15-177 5-168 (169)
116 cd04137 RheB Rheb (Ras Homolog 100.0 1.2E-28 2.5E-33 165.2 16.5 158 18-180 2-165 (180)
117 cd00154 Rab Rab family. Rab G 100.0 1.4E-28 3E-33 161.3 16.2 151 18-174 1-158 (159)
118 cd00876 Ras Ras family. The R 100.0 1.6E-28 3.6E-33 161.4 15.6 154 19-177 1-160 (160)
119 KOG0091 GTPase Rab39, small G 100.0 1.8E-29 4E-34 158.4 10.3 162 15-179 6-174 (213)
120 KOG0072 GTP-binding ADP-ribosy 100.0 6E-29 1.3E-33 152.9 9.9 180 1-180 1-181 (182)
121 cd04129 Rho2 Rho2 subfamily. 100.0 2.7E-28 5.9E-33 164.3 14.0 163 17-181 1-176 (187)
122 cd01897 NOG NOG1 is a nucleola 100.0 1.3E-27 2.9E-32 158.4 15.7 153 18-177 1-167 (168)
123 KOG0076 GTP-binding ADP-ribosy 100.0 6.8E-29 1.5E-33 157.3 8.9 180 1-180 1-189 (197)
124 PTZ00132 GTP-binding nuclear p 100.0 4.1E-27 8.9E-32 161.9 18.3 160 13-179 5-169 (215)
125 KOG0081 GTPase Rab27, small G 100.0 7.4E-30 1.6E-34 159.5 3.4 161 16-179 8-182 (219)
126 KOG0395 Ras-related GTPase [Ge 100.0 5.1E-28 1.1E-32 162.5 12.5 161 16-179 2-166 (196)
127 cd01898 Obg Obg subfamily. Th 100.0 4.1E-27 8.8E-32 156.3 15.3 156 19-177 2-170 (170)
128 KOG0088 GTPase Rab21, small G 100.0 2.9E-28 6.4E-33 152.3 8.9 162 15-180 11-177 (218)
129 cd04102 RabL3 RabL3 (Rab-like3 100.0 6.7E-27 1.4E-31 158.2 15.2 146 18-164 1-176 (202)
130 cd04171 SelB SelB subfamily. 99.9 5.9E-27 1.3E-31 154.6 12.9 154 18-175 1-163 (164)
131 cd01878 HflX HflX subfamily. 99.9 2.4E-26 5.2E-31 156.9 14.5 154 15-177 39-204 (204)
132 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 4E-26 8.7E-31 151.3 15.1 155 19-179 2-167 (168)
133 cd01890 LepA LepA subfamily. 99.9 2.2E-26 4.8E-31 154.1 13.3 153 19-178 2-177 (179)
134 KOG0097 GTPase Rab14, small G 99.9 8.4E-27 1.8E-31 143.4 9.9 161 15-179 9-174 (215)
135 PRK12299 obgE GTPase CgtA; Rev 99.9 6.6E-26 1.4E-30 163.7 16.2 159 18-180 159-330 (335)
136 KOG0083 GTPase Rab26/Rab37, sm 99.9 1.6E-28 3.4E-33 149.4 1.4 156 21-180 1-162 (192)
137 cd00881 GTP_translation_factor 99.9 8.8E-26 1.9E-30 152.3 13.9 155 19-178 1-187 (189)
138 TIGR00231 small_GTP small GTP- 99.9 2.8E-25 6E-30 145.5 15.6 153 17-174 1-160 (161)
139 PRK15494 era GTPase Era; Provi 99.9 2.7E-25 5.9E-30 161.4 17.0 156 15-179 50-217 (339)
140 PRK03003 GTP-binding protein D 99.9 3E-25 6.6E-30 168.0 17.6 160 16-180 210-384 (472)
141 TIGR00436 era GTP-binding prot 99.9 2.4E-25 5.1E-30 157.7 15.7 152 19-179 2-165 (270)
142 KOG0393 Ras-related small GTPa 99.9 6E-26 1.3E-30 149.5 10.5 164 15-179 2-180 (198)
143 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.2E-24 2.6E-29 142.5 16.5 143 18-177 2-156 (157)
144 TIGR02729 Obg_CgtA Obg family 99.9 6E-25 1.3E-29 158.6 16.1 156 18-177 158-328 (329)
145 cd01879 FeoB Ferrous iron tran 99.9 6.8E-25 1.5E-29 143.9 14.4 146 22-178 1-157 (158)
146 PRK04213 GTP-binding protein; 99.9 8.6E-26 1.9E-30 153.9 10.2 161 15-181 7-195 (201)
147 KOG0074 GTP-binding ADP-ribosy 99.9 2.9E-25 6.3E-30 136.3 11.2 164 15-178 15-179 (185)
148 TIGR03156 GTP_HflX GTP-binding 99.9 7.3E-25 1.6E-29 159.5 15.5 150 16-176 188-350 (351)
149 cd01881 Obg_like The Obg-like 99.9 4.1E-25 8.8E-30 147.4 12.9 152 22-176 1-175 (176)
150 cd01889 SelB_euk SelB subfamil 99.9 3.9E-25 8.5E-30 149.5 12.9 156 18-178 1-186 (192)
151 TIGR03594 GTPase_EngA ribosome 99.9 9.9E-25 2.1E-29 164.2 16.4 160 15-179 170-345 (429)
152 TIGR02528 EutP ethanolamine ut 99.9 1.3E-25 2.9E-30 144.9 10.0 134 19-174 2-141 (142)
153 cd00882 Ras_like_GTPase Ras-li 99.9 6.5E-25 1.4E-29 142.7 12.7 150 22-174 1-156 (157)
154 cd01895 EngA2 EngA2 subfamily. 99.9 3E-24 6.6E-29 142.8 16.2 155 17-176 2-173 (174)
155 PLN00023 GTP-binding protein; 99.9 1.5E-24 3.2E-29 153.6 14.6 122 12-133 16-166 (334)
156 PRK05291 trmE tRNA modificatio 99.9 2.2E-24 4.7E-29 161.9 16.2 147 15-179 213-371 (449)
157 PF02421 FeoB_N: Ferrous iron 99.9 1.1E-25 2.3E-30 144.8 7.4 141 18-173 1-156 (156)
158 COG1100 GTPase SAR1 and relate 99.9 3.1E-24 6.6E-29 148.1 14.8 164 16-179 4-186 (219)
159 cd01891 TypA_BipA TypA (tyrosi 99.9 4E-24 8.8E-29 144.8 14.9 147 17-168 2-172 (194)
160 PF00009 GTP_EFTU: Elongation 99.9 1.4E-24 3E-29 146.3 12.0 157 16-178 2-187 (188)
161 cd01888 eIF2_gamma eIF2-gamma 99.9 1.8E-24 3.9E-29 147.3 12.4 159 18-179 1-200 (203)
162 PRK12296 obgE GTPase CgtA; Rev 99.9 4.8E-24 1E-28 159.6 15.5 158 18-180 160-342 (500)
163 PRK03003 GTP-binding protein D 99.9 7.3E-24 1.6E-28 160.5 16.4 152 16-179 37-200 (472)
164 TIGR00487 IF-2 translation ini 99.9 8.1E-24 1.7E-28 162.5 16.2 157 14-176 84-248 (587)
165 COG1159 Era GTPase [General fu 99.9 1.9E-24 4E-29 149.4 11.4 159 14-179 3-173 (298)
166 PRK00089 era GTPase Era; Revie 99.9 1.4E-23 3E-28 150.6 16.2 157 15-179 3-172 (292)
167 PTZ00099 rab6; Provisional 99.9 3.5E-24 7.5E-29 142.5 12.1 130 45-180 9-144 (176)
168 TIGR00450 mnmE_trmE_thdF tRNA 99.9 2.2E-23 4.7E-28 155.8 17.5 150 15-180 201-362 (442)
169 PRK12297 obgE GTPase CgtA; Rev 99.9 3.1E-23 6.8E-28 153.4 18.1 155 19-180 160-329 (424)
170 cd01894 EngA1 EngA1 subfamily. 99.9 1E-23 2.3E-28 138.1 14.0 144 21-177 1-157 (157)
171 PRK00093 GTP-binding protein D 99.9 2.1E-23 4.6E-28 157.1 16.8 160 15-179 171-345 (435)
172 cd04163 Era Era subfamily. Er 99.9 2.7E-23 5.8E-28 137.3 15.4 154 16-177 2-168 (168)
173 cd04105 SR_beta Signal recogni 99.9 1.9E-23 4.2E-28 142.0 15.0 157 19-175 2-202 (203)
174 PRK15467 ethanolamine utilizat 99.9 6.6E-24 1.4E-28 139.0 12.2 142 19-179 3-148 (158)
175 PRK00454 engB GTP-binding prot 99.9 1.4E-23 3.1E-28 142.4 14.1 162 12-179 19-195 (196)
176 PRK05306 infB translation init 99.9 1.8E-23 4E-28 164.1 16.3 157 14-176 287-450 (787)
177 KOG4252 GTP-binding protein [S 99.9 7.5E-26 1.6E-30 144.4 1.9 161 15-180 18-183 (246)
178 cd00880 Era_like Era (E. coli 99.9 3.8E-23 8.3E-28 135.5 14.5 150 22-176 1-162 (163)
179 PRK11058 GTPase HflX; Provisio 99.9 6.9E-23 1.5E-27 152.3 17.1 153 18-179 198-363 (426)
180 TIGR03598 GTPase_YsxC ribosome 99.9 9.5E-24 2.1E-28 141.3 10.7 151 11-167 12-179 (179)
181 PRK09518 bifunctional cytidyla 99.9 7.4E-23 1.6E-27 161.5 16.7 159 16-179 449-622 (712)
182 TIGR00475 selB selenocysteine- 99.9 3.8E-23 8.2E-28 159.3 13.3 158 18-180 1-168 (581)
183 CHL00189 infB translation init 99.9 6.3E-23 1.4E-27 159.9 14.6 157 15-177 242-409 (742)
184 PRK12298 obgE GTPase CgtA; Rev 99.9 1.9E-22 4.1E-27 148.4 16.3 160 18-179 160-334 (390)
185 TIGR01393 lepA GTP-binding pro 99.9 2E-22 4.3E-27 155.5 15.8 157 16-179 2-181 (595)
186 PRK12317 elongation factor 1-a 99.9 1.5E-22 3.3E-27 151.8 14.3 155 14-170 3-197 (425)
187 PF08477 Miro: Miro-like prote 99.9 3.9E-23 8.4E-28 129.5 8.6 111 19-129 1-119 (119)
188 COG1160 Predicted GTPases [Gen 99.9 7.3E-22 1.6E-26 143.7 16.0 159 16-179 177-352 (444)
189 COG0486 ThdF Predicted GTPase 99.9 7.6E-22 1.6E-26 144.0 15.9 152 15-180 215-378 (454)
190 TIGR03594 GTPase_EngA ribosome 99.9 3.3E-22 7.2E-27 150.5 14.3 149 19-179 1-161 (429)
191 PRK00093 GTP-binding protein D 99.9 7.9E-22 1.7E-26 148.7 15.6 146 18-176 2-160 (435)
192 PRK09518 bifunctional cytidyla 99.9 9.4E-22 2E-26 155.3 16.2 153 15-179 273-437 (712)
193 PRK05433 GTP-binding protein L 99.9 1.2E-21 2.7E-26 151.3 16.1 158 15-179 5-185 (600)
194 TIGR00483 EF-1_alpha translati 99.9 4.9E-22 1.1E-26 149.1 12.9 155 14-170 4-199 (426)
195 COG2229 Predicted GTPase [Gene 99.9 3.1E-21 6.7E-26 124.2 14.6 157 12-176 5-176 (187)
196 cd01896 DRG The developmentall 99.9 4.3E-21 9.4E-26 132.9 16.0 151 19-179 2-227 (233)
197 cd04168 TetM_like Tet(M)-like 99.9 2.9E-21 6.3E-26 134.0 14.4 155 19-178 1-235 (237)
198 cd01884 EF_Tu EF-Tu subfamily. 99.9 1.7E-21 3.6E-26 131.4 12.6 145 17-166 2-171 (195)
199 TIGR00491 aIF-2 translation in 99.9 1.5E-21 3.4E-26 149.8 14.0 154 16-177 3-215 (590)
200 TIGR01394 TypA_BipA GTP-bindin 99.9 2.3E-21 5E-26 149.3 14.9 157 18-179 2-192 (594)
201 PRK09554 feoB ferrous iron tra 99.9 3.3E-21 7.2E-26 152.0 16.1 151 16-177 2-167 (772)
202 TIGR03680 eif2g_arch translati 99.9 8.9E-22 1.9E-26 146.5 12.3 161 15-178 2-196 (406)
203 COG1160 Predicted GTPases [Gen 99.9 1.2E-21 2.6E-26 142.6 12.3 148 18-177 4-164 (444)
204 PRK10218 GTP-binding protein; 99.9 3.3E-21 7.1E-26 148.4 15.3 159 15-178 3-195 (607)
205 KOG0077 Vesicle coat complex C 99.9 3.1E-22 6.8E-27 126.3 7.9 162 15-176 18-191 (193)
206 KOG1673 Ras GTPases [General f 99.9 7.4E-22 1.6E-26 123.3 9.4 166 13-180 16-188 (205)
207 TIGR00437 feoB ferrous iron tr 99.9 3.6E-21 7.7E-26 148.6 13.8 143 24-177 1-154 (591)
208 cd04166 CysN_ATPS CysN_ATPS su 99.9 2.7E-21 5.8E-26 132.2 11.6 147 19-169 1-185 (208)
209 PRK04000 translation initiatio 99.9 4.7E-21 1E-25 142.6 13.3 161 15-178 7-201 (411)
210 COG0218 Predicted GTPase [Gene 99.9 9.4E-21 2E-25 124.6 13.0 167 9-180 16-199 (200)
211 cd01883 EF1_alpha Eukaryotic e 99.9 2.6E-21 5.6E-26 133.2 10.8 147 19-168 1-195 (219)
212 PF10662 PduV-EutP: Ethanolami 99.9 1.6E-21 3.6E-26 122.8 8.9 135 19-174 3-142 (143)
213 cd04165 GTPBP1_like GTPBP1-lik 99.9 1.2E-20 2.6E-25 129.8 13.0 152 19-175 1-220 (224)
214 PRK04004 translation initiatio 99.9 1.6E-20 3.4E-25 144.7 15.0 156 14-177 3-217 (586)
215 KOG3883 Ras family small GTPas 99.9 2E-20 4.3E-25 116.7 12.5 162 15-179 7-176 (198)
216 cd01876 YihA_EngB The YihA (En 99.9 3.9E-20 8.5E-25 122.4 14.9 154 19-177 1-170 (170)
217 PRK10512 selenocysteinyl-tRNA- 99.9 9.1E-21 2E-25 146.7 13.3 157 18-179 1-167 (614)
218 KOG1423 Ras-like GTPase ERA [C 99.8 6.3E-21 1.4E-25 131.9 9.3 160 15-178 70-271 (379)
219 COG0532 InfB Translation initi 99.8 5.9E-20 1.3E-24 135.9 14.0 158 15-178 3-170 (509)
220 PRK12736 elongation factor Tu; 99.8 2.7E-20 5.7E-25 138.2 12.2 160 14-178 9-201 (394)
221 PRK12735 elongation factor Tu; 99.8 5.5E-20 1.2E-24 136.6 12.3 159 15-178 10-203 (396)
222 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 4.8E-20 1E-24 118.9 10.2 156 16-178 9-169 (216)
223 CHL00071 tufA elongation facto 99.8 7.5E-20 1.6E-24 136.4 12.2 147 14-165 9-180 (409)
224 cd01886 EF-G Elongation factor 99.8 1.5E-19 3.2E-24 127.6 12.0 137 19-161 1-158 (270)
225 KOG1145 Mitochondrial translat 99.8 5.1E-19 1.1E-23 130.9 14.7 160 14-179 150-317 (683)
226 cd04104 p47_IIGP_like p47 (47- 99.8 3.5E-19 7.5E-24 120.8 12.4 158 17-181 1-187 (197)
227 PRK00741 prfC peptide chain re 99.8 8E-19 1.7E-23 133.8 15.6 114 15-133 8-146 (526)
228 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 2.8E-19 6.1E-24 122.5 11.8 157 19-177 1-175 (232)
229 TIGR00485 EF-Tu translation el 99.8 3.9E-19 8.5E-24 132.1 13.3 146 14-164 9-179 (394)
230 cd04167 Snu114p Snu114p subfam 99.8 3.1E-19 6.6E-24 122.6 11.5 108 19-131 2-136 (213)
231 COG0370 FeoB Fe2+ transport sy 99.8 3.1E-19 6.7E-24 135.6 12.3 154 16-180 2-166 (653)
232 PRK00049 elongation factor Tu; 99.8 3.6E-19 7.9E-24 132.2 12.4 158 15-177 10-202 (396)
233 PRK13351 elongation factor G; 99.8 9.1E-19 2E-23 138.4 15.4 115 14-133 5-140 (687)
234 COG1084 Predicted GTPase [Gene 99.8 1.3E-18 2.9E-23 121.8 14.3 155 15-176 166-334 (346)
235 KOG1707 Predicted Ras related/ 99.8 9E-20 1.9E-24 135.6 8.5 160 15-178 7-175 (625)
236 KOG1489 Predicted GTP-binding 99.8 8.2E-19 1.8E-23 122.1 12.4 154 18-176 197-365 (366)
237 cd04169 RF3 RF3 subfamily. Pe 99.8 7E-19 1.5E-23 124.0 12.4 113 17-134 2-139 (267)
238 PRK05124 cysN sulfate adenylyl 99.8 3.7E-19 8.1E-24 134.5 11.6 153 14-170 24-217 (474)
239 PLN03126 Elongation factor Tu; 99.8 8.3E-19 1.8E-23 132.2 12.6 145 15-164 79-248 (478)
240 TIGR02034 CysN sulfate adenyly 99.8 6.9E-19 1.5E-23 131.1 11.6 147 18-168 1-187 (406)
241 PRK05506 bifunctional sulfate 99.8 5.9E-19 1.3E-23 138.1 11.4 159 6-168 13-211 (632)
242 PLN03127 Elongation factor Tu; 99.8 3E-18 6.5E-23 128.5 14.6 159 15-178 59-252 (447)
243 PTZ00141 elongation factor 1- 99.8 8.2E-19 1.8E-23 131.7 11.6 150 15-168 5-203 (446)
244 PF09439 SRPRB: Signal recogni 99.8 3.5E-19 7.6E-24 117.1 7.9 127 16-143 2-137 (181)
245 PLN00043 elongation factor 1-a 99.8 1.7E-18 3.6E-23 130.0 12.4 149 15-168 5-203 (447)
246 PTZ00327 eukaryotic translatio 99.8 1.9E-18 4.1E-23 129.5 11.7 163 13-178 30-233 (460)
247 PF01926 MMR_HSR1: 50S ribosom 99.8 7.8E-18 1.7E-22 104.9 12.6 103 19-127 1-116 (116)
248 KOG0462 Elongation factor-type 99.8 7.6E-18 1.7E-22 124.7 13.8 157 15-178 58-235 (650)
249 TIGR00503 prfC peptide chain r 99.8 1.2E-17 2.5E-22 127.6 15.1 113 15-132 9-146 (527)
250 COG2262 HflX GTPases [General 99.8 1.3E-17 2.8E-22 120.1 14.4 155 15-179 190-357 (411)
251 COG1163 DRG Predicted GTPase [ 99.8 1.5E-17 3.2E-22 116.3 14.0 155 15-179 61-290 (365)
252 cd04170 EF-G_bact Elongation f 99.8 1E-17 2.3E-22 118.8 12.1 110 19-133 1-131 (268)
253 cd01852 AIG1 AIG1 (avrRpt2-ind 99.8 2.7E-17 5.8E-22 111.6 13.5 160 18-179 1-185 (196)
254 KOG4423 GTP-binding protein-li 99.8 4.5E-20 9.8E-25 118.7 -0.4 161 18-179 26-195 (229)
255 COG0536 Obg Predicted GTPase [ 99.8 2.4E-17 5.3E-22 116.0 13.1 159 18-180 160-335 (369)
256 TIGR00484 EF-G translation elo 99.8 2E-17 4.3E-22 130.7 13.7 143 15-163 8-171 (689)
257 cd01885 EF2 EF2 (for archaea a 99.8 6.8E-18 1.5E-22 115.7 9.7 109 18-131 1-138 (222)
258 KOG0090 Signal recognition par 99.8 2.8E-17 6E-22 108.4 12.0 163 14-177 35-238 (238)
259 PRK12739 elongation factor G; 99.8 2E-17 4.4E-22 130.6 13.6 114 15-133 6-140 (691)
260 KOG1191 Mitochondrial GTPase [ 99.8 2.9E-17 6.2E-22 120.4 12.4 165 15-180 266-452 (531)
261 PRK00007 elongation factor G; 99.7 5E-17 1.1E-21 128.3 14.0 114 15-133 8-142 (693)
262 COG5256 TEF1 Translation elong 99.7 2.3E-17 5.1E-22 118.8 10.3 152 15-169 5-202 (428)
263 COG3596 Predicted GTPase [Gene 99.7 5.1E-17 1.1E-21 111.5 10.2 164 14-180 36-224 (296)
264 cd01899 Ygr210 Ygr210 subfamil 99.7 6.1E-16 1.3E-20 111.3 15.1 154 20-179 1-270 (318)
265 PRK09866 hypothetical protein; 99.7 1.1E-15 2.4E-20 116.5 16.3 112 61-175 230-350 (741)
266 cd00066 G-alpha G protein alph 99.7 5.1E-16 1.1E-20 112.2 13.9 134 46-179 146-312 (317)
267 PRK12740 elongation factor G; 99.7 2.4E-16 5.2E-21 124.6 12.8 106 23-133 1-127 (668)
268 KOG1490 GTP-binding protein CR 99.7 3.6E-17 7.8E-22 120.1 6.7 164 14-179 165-342 (620)
269 smart00275 G_alpha G protein a 99.7 8.7E-16 1.9E-20 111.8 13.5 134 46-179 169-335 (342)
270 cd01850 CDC_Septin CDC/Septin. 99.7 3.6E-16 7.8E-21 110.9 11.1 140 16-161 3-185 (276)
271 COG0481 LepA Membrane GTPase L 99.7 9E-16 2E-20 112.3 11.7 158 15-179 7-187 (603)
272 PF03029 ATP_bind_1: Conserved 99.7 5.9E-16 1.3E-20 107.3 9.9 115 62-177 92-236 (238)
273 COG4917 EutP Ethanolamine util 99.7 2.8E-16 6E-21 95.1 6.9 138 19-176 3-144 (148)
274 PRK13768 GTPase; Provisional 99.7 1.2E-15 2.5E-20 107.1 11.0 118 61-179 97-248 (253)
275 KOG1532 GTPase XAB1, interacts 99.7 1.1E-15 2.3E-20 104.9 9.6 169 11-179 13-265 (366)
276 PRK09435 membrane ATPase/prote 99.7 3.7E-15 7.9E-20 107.4 12.4 110 59-180 147-262 (332)
277 PF04548 AIG1: AIG1 family; I 99.6 4.4E-15 9.5E-20 101.8 11.4 160 18-180 1-188 (212)
278 COG1217 TypA Predicted membran 99.6 3E-15 6.5E-20 109.4 10.8 160 15-179 3-196 (603)
279 PRK09602 translation-associate 99.6 1.7E-14 3.7E-19 106.8 14.8 78 18-95 2-113 (396)
280 cd01882 BMS1 Bms1. Bms1 is an 99.6 4.8E-15 1E-19 102.4 11.0 141 15-164 37-182 (225)
281 cd01853 Toc34_like Toc34-like 99.6 2E-14 4.4E-19 100.2 13.0 119 15-133 29-164 (249)
282 PRK14845 translation initiatio 99.6 1.2E-14 2.5E-19 117.6 13.2 142 28-177 472-672 (1049)
283 TIGR00490 aEF-2 translation el 99.6 2.2E-15 4.8E-20 119.5 8.6 113 15-132 17-152 (720)
284 COG3276 SelB Selenocysteine-sp 99.6 1.4E-14 3.1E-19 105.4 11.0 155 19-178 2-162 (447)
285 PRK07560 elongation factor EF- 99.6 1.6E-14 3.5E-19 114.9 12.3 112 15-131 18-152 (731)
286 TIGR00991 3a0901s02IAP34 GTP-b 99.6 8.1E-14 1.7E-18 98.9 14.1 117 15-133 36-168 (313)
287 KOG0082 G-protein alpha subuni 99.6 2.8E-14 6.1E-19 102.4 11.4 135 45-179 179-345 (354)
288 TIGR00101 ureG urease accessor 99.6 1.3E-13 2.8E-18 93.4 13.4 104 60-178 91-196 (199)
289 PTZ00416 elongation factor 2; 99.6 2.6E-14 5.7E-19 114.9 10.4 112 15-131 17-157 (836)
290 PLN00116 translation elongatio 99.6 1.8E-14 3.9E-19 116.0 9.3 113 14-131 16-163 (843)
291 KOG0458 Elongation factor 1 al 99.5 8.8E-14 1.9E-18 104.2 11.2 155 13-169 173-373 (603)
292 KOG1144 Translation initiation 99.5 6.8E-14 1.5E-18 107.3 9.9 159 15-178 473-687 (1064)
293 KOG0461 Selenocysteine-specifi 99.5 9.4E-14 2E-18 98.4 9.6 159 15-179 5-194 (522)
294 TIGR00073 hypB hydrogenase acc 99.5 1.6E-13 3.4E-18 93.9 10.5 152 11-177 16-206 (207)
295 COG1703 ArgK Putative periplas 99.5 5.3E-13 1.1E-17 93.0 11.7 161 7-179 39-255 (323)
296 COG5257 GCD11 Translation init 99.5 8.7E-14 1.9E-18 97.6 7.4 160 15-179 8-203 (415)
297 TIGR00750 lao LAO/AO transport 99.5 1.7E-12 3.6E-17 93.5 14.1 107 60-178 126-238 (300)
298 PF03308 ArgK: ArgK protein; 99.5 1.2E-14 2.6E-19 99.7 2.5 152 15-178 27-230 (266)
299 COG4108 PrfC Peptide chain rel 99.5 6.3E-13 1.4E-17 96.8 10.8 113 15-132 10-147 (528)
300 PTZ00258 GTP-binding protein; 99.5 1.3E-12 2.9E-17 96.0 12.5 81 15-95 19-126 (390)
301 PF05049 IIGP: Interferon-indu 99.5 4.7E-13 1E-17 97.4 9.1 159 15-180 33-220 (376)
302 COG0480 FusA Translation elong 99.5 8.5E-13 1.9E-17 103.3 10.9 116 14-134 7-144 (697)
303 KOG3905 Dynein light intermedi 99.5 4.5E-12 9.6E-17 89.3 13.1 164 16-179 51-291 (473)
304 COG2895 CysN GTPases - Sulfate 99.4 1.7E-12 3.7E-17 92.2 10.7 149 15-167 4-192 (431)
305 PF00350 Dynamin_N: Dynamin fa 99.4 2.2E-12 4.9E-17 85.4 10.5 64 61-128 101-168 (168)
306 PF00735 Septin: Septin; Inte 99.4 2.3E-12 5E-17 91.5 9.6 115 17-136 4-160 (281)
307 smart00010 small_GTPase Small 99.4 7.4E-13 1.6E-17 83.2 6.4 113 18-167 1-115 (124)
308 PF00503 G-alpha: G-protein al 99.4 7.5E-12 1.6E-16 93.4 12.7 130 48-177 222-389 (389)
309 KOG3886 GTP-binding protein [S 99.4 7.8E-13 1.7E-17 88.8 6.6 147 16-163 3-164 (295)
310 TIGR00157 ribosome small subun 99.4 2.9E-12 6.3E-17 89.6 9.4 95 72-175 24-120 (245)
311 KOG0410 Predicted GTP binding 99.4 7E-13 1.5E-17 93.2 6.0 150 15-179 176-342 (410)
312 PRK10463 hydrogenase nickel in 99.4 3.4E-12 7.4E-17 90.1 9.0 59 118-177 230-288 (290)
313 PRK09601 GTP-binding protein Y 99.4 8.5E-12 1.8E-16 90.8 10.4 78 18-95 3-107 (364)
314 PF05783 DLIC: Dynein light in 99.4 2.9E-11 6.3E-16 91.1 13.1 163 15-179 23-265 (472)
315 TIGR00993 3a0901s04IAP86 chlor 99.3 1.6E-11 3.5E-16 94.5 11.4 118 16-133 117-251 (763)
316 COG0378 HypB Ni2+-binding GTPa 99.3 1.8E-11 3.8E-16 80.6 9.7 144 17-177 13-200 (202)
317 smart00053 DYNc Dynamin, GTPas 99.3 6.9E-11 1.5E-15 81.9 12.8 114 16-133 25-207 (240)
318 KOG0447 Dynamin-like GTP bindi 99.3 1.1E-10 2.3E-15 87.8 11.9 101 61-164 412-527 (980)
319 KOG1707 Predicted Ras related/ 99.2 2.4E-10 5.1E-15 86.2 12.3 153 13-178 421-583 (625)
320 COG0050 TufB GTPases - transla 99.2 1E-10 2.2E-15 81.6 9.3 143 15-162 10-177 (394)
321 KOG0468 U5 snRNP-specific prot 99.2 4.6E-11 9.9E-16 91.3 8.2 111 15-130 126-261 (971)
322 COG0012 Predicted GTPase, prob 99.2 5E-10 1.1E-14 80.8 13.0 80 17-96 2-109 (372)
323 KOG3887 Predicted small GTPase 99.2 2.1E-10 4.5E-15 77.9 10.0 159 17-178 27-202 (347)
324 TIGR02836 spore_IV_A stage IV 99.2 8.6E-10 1.9E-14 81.0 13.8 157 8-173 6-232 (492)
325 cd04178 Nucleostemin_like Nucl 99.2 1.1E-10 2.3E-15 77.3 7.0 56 15-70 115-171 (172)
326 cd01900 YchF YchF subfamily. 99.2 8.2E-11 1.8E-15 83.1 6.6 76 20-95 1-103 (274)
327 KOG1486 GTP-binding protein DR 99.2 1E-09 2.2E-14 75.1 11.5 84 15-98 60-153 (364)
328 cd01855 YqeH YqeH. YqeH is an 99.2 1.1E-10 2.3E-15 78.9 6.8 98 74-178 24-125 (190)
329 cd01858 NGP_1 NGP-1. Autoanti 99.1 2.5E-10 5.5E-15 74.8 7.5 55 16-70 101-156 (157)
330 cd01859 MJ1464 MJ1464. This f 99.1 1.2E-10 2.6E-15 76.2 5.9 95 75-179 3-97 (156)
331 KOG1954 Endocytosis/signaling 99.1 8.9E-10 1.9E-14 79.2 9.9 115 15-133 56-226 (532)
332 COG5019 CDC3 Septin family pro 99.1 2.1E-09 4.5E-14 77.3 11.2 138 13-156 19-199 (373)
333 PRK12289 GTPase RsgA; Reviewed 99.1 1.3E-09 2.8E-14 79.8 8.9 89 79-176 84-173 (352)
334 KOG2655 Septin family protein 99.0 3.6E-09 7.7E-14 76.6 10.6 117 14-136 18-176 (366)
335 COG5258 GTPBP1 GTPase [General 99.0 6E-10 1.3E-14 80.4 6.5 155 14-173 114-334 (527)
336 KOG0085 G protein subunit Galp 99.0 2.9E-10 6.3E-15 76.8 4.1 136 45-180 183-351 (359)
337 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 8.7E-10 1.9E-14 70.9 6.0 52 19-71 85-138 (141)
338 KOG0705 GTPase-activating prot 99.0 5.7E-10 1.2E-14 83.7 5.5 160 16-180 29-191 (749)
339 cd01854 YjeQ_engC YjeQ/EngC. 99.0 2.2E-09 4.9E-14 76.9 8.2 88 79-175 73-161 (287)
340 KOG1547 Septin CDC10 and relat 99.0 9.6E-09 2.1E-13 69.9 10.1 143 15-163 44-228 (336)
341 COG1161 Predicted GTPases [Gen 99.0 2E-09 4.3E-14 78.2 7.0 59 14-72 129-188 (322)
342 KOG2486 Predicted GTPase [Gene 99.0 3.4E-10 7.3E-15 78.3 2.8 160 11-176 130-314 (320)
343 cd01858 NGP_1 NGP-1. Autoanti 99.0 4E-09 8.7E-14 69.1 7.8 90 81-177 5-94 (157)
344 PRK12288 GTPase RsgA; Reviewed 99.0 4.4E-09 9.5E-14 77.0 8.4 89 82-176 118-206 (347)
345 PRK00098 GTPase RsgA; Reviewed 99.0 4.1E-09 8.8E-14 76.0 8.0 85 82-174 78-163 (298)
346 KOG1487 GTP-binding protein DR 99.0 8.2E-09 1.8E-13 71.0 8.9 82 18-99 60-151 (358)
347 PRK09563 rbgA GTPase YlqF; Rev 98.9 4.1E-09 8.8E-14 75.6 7.5 58 15-72 119-177 (287)
348 TIGR03597 GTPase_YqeH ribosome 98.9 1.9E-09 4.2E-14 79.5 5.9 98 71-176 50-151 (360)
349 cd01859 MJ1464 MJ1464. This f 98.9 5E-09 1.1E-13 68.5 7.2 56 15-70 99-155 (156)
350 TIGR03596 GTPase_YlqF ribosome 98.9 4.5E-09 9.8E-14 75.0 7.0 56 15-71 116-173 (276)
351 KOG0448 Mitofusin 1 GTPase, in 98.9 2.4E-08 5.1E-13 77.0 10.9 145 13-162 105-310 (749)
352 cd01849 YlqF_related_GTPase Yl 98.9 8.4E-09 1.8E-13 67.4 7.3 84 86-177 1-84 (155)
353 KOG0099 G protein subunit Galp 98.9 9.1E-09 2E-13 70.9 7.4 84 48-131 189-282 (379)
354 cd01856 YlqF YlqF. Proteins o 98.9 6.9E-09 1.5E-13 68.9 6.7 56 15-71 113-170 (171)
355 KOG0464 Elongation factor G [T 98.9 6E-10 1.3E-14 81.3 1.5 114 15-133 35-169 (753)
356 KOG0467 Translation elongation 98.9 6.7E-09 1.5E-13 80.7 7.2 111 15-130 7-136 (887)
357 cd01849 YlqF_related_GTPase Yl 98.9 1.2E-08 2.5E-13 66.7 7.1 55 15-70 98-154 (155)
358 KOG0460 Mitochondrial translat 98.9 2.6E-08 5.6E-13 71.1 9.0 144 15-162 52-219 (449)
359 TIGR00092 GTP-binding protein 98.8 3.2E-08 6.9E-13 72.5 8.9 78 18-95 3-108 (368)
360 COG5192 BMS1 GTP-binding prote 98.8 3.2E-08 6.9E-13 75.2 9.0 141 15-162 67-210 (1077)
361 KOG0465 Mitochondrial elongati 98.8 1.2E-08 2.5E-13 77.7 6.7 114 15-133 37-171 (721)
362 cd01855 YqeH YqeH. YqeH is an 98.8 8.4E-09 1.8E-13 69.7 5.5 55 16-70 126-189 (190)
363 cd03112 CobW_like The function 98.8 1.9E-08 4.2E-13 65.9 7.0 65 60-130 86-158 (158)
364 cd01851 GBP Guanylate-binding 98.8 1.5E-07 3.2E-12 65.2 11.5 85 15-99 5-106 (224)
365 KOG0466 Translation initiation 98.8 2.1E-09 4.6E-14 75.5 1.3 162 14-178 35-241 (466)
366 cd01856 YlqF YlqF. Proteins o 98.8 3.1E-08 6.7E-13 65.8 6.7 90 77-178 12-101 (171)
367 KOG1491 Predicted GTP-binding 98.8 4.4E-08 9.4E-13 69.9 7.5 82 15-96 18-126 (391)
368 TIGR03596 GTPase_YlqF ribosome 98.8 5.1E-08 1.1E-12 69.6 7.8 91 77-179 14-104 (276)
369 KOG0459 Polypeptide release fa 98.7 3.3E-08 7.2E-13 72.0 5.9 157 14-170 76-278 (501)
370 KOG0463 GTP-binding protein GP 98.7 6.6E-08 1.4E-12 70.1 7.4 152 17-173 133-353 (641)
371 KOG1143 Predicted translation 98.7 1.3E-07 2.8E-12 68.6 8.3 154 15-173 165-383 (591)
372 COG1618 Predicted nucleotide k 98.7 1.1E-06 2.3E-11 56.6 11.5 147 15-179 3-177 (179)
373 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 5.2E-08 1.1E-12 62.6 5.7 79 79-165 6-84 (141)
374 PRK09563 rbgA GTPase YlqF; Rev 98.7 1.3E-07 2.7E-12 68.0 7.4 91 77-179 17-107 (287)
375 COG0523 Putative GTPases (G3E 98.6 9.2E-07 2E-11 64.1 11.1 132 20-160 4-184 (323)
376 PF03193 DUF258: Protein of un 98.6 8.5E-08 1.8E-12 62.3 4.4 55 18-73 36-99 (161)
377 PRK12288 GTPase RsgA; Reviewed 98.6 1.5E-07 3.3E-12 69.0 6.0 54 19-75 207-271 (347)
378 PRK01889 GTPase RsgA; Reviewed 98.6 7.5E-07 1.6E-11 65.8 9.6 84 82-174 110-193 (356)
379 TIGR00157 ribosome small subun 98.6 2E-07 4.4E-12 65.3 6.2 53 18-74 121-184 (245)
380 PRK10416 signal recognition pa 98.6 8.5E-07 1.8E-11 64.4 9.4 139 16-170 113-302 (318)
381 TIGR03348 VI_IcmF type VI secr 98.6 1.1E-06 2.4E-11 74.1 11.3 112 18-132 112-257 (1169)
382 PRK13796 GTPase YqeH; Provisio 98.5 2E-07 4.4E-12 69.1 6.2 95 74-177 59-158 (365)
383 KOG1424 Predicted GTP-binding 98.5 1.1E-07 2.3E-12 71.3 4.6 54 17-70 314-368 (562)
384 TIGR03597 GTPase_YqeH ribosome 98.5 1.9E-07 4.2E-12 69.1 5.8 57 17-73 154-216 (360)
385 cd03114 ArgK-like The function 98.5 1E-06 2.2E-11 57.0 8.5 58 60-129 91-148 (148)
386 PRK12289 GTPase RsgA; Reviewed 98.5 2.5E-07 5.4E-12 68.0 6.1 54 19-73 174-236 (352)
387 PRK11537 putative GTP-binding 98.5 9.7E-07 2.1E-11 64.2 8.9 88 61-159 91-186 (318)
388 PRK14974 cell division protein 98.5 9.5E-07 2.1E-11 64.5 8.8 140 16-171 139-323 (336)
389 PRK13796 GTPase YqeH; Provisio 98.5 3.4E-07 7.4E-12 67.9 6.3 56 17-72 160-221 (365)
390 KOG3859 Septins (P-loop GTPase 98.5 2.3E-07 4.9E-12 64.7 4.7 115 15-134 40-192 (406)
391 TIGR00064 ftsY signal recognit 98.5 3.6E-06 7.9E-11 59.9 10.6 97 59-171 153-261 (272)
392 PF02492 cobW: CobW/HypB/UreG, 98.4 1.2E-07 2.5E-12 63.4 2.1 110 19-134 2-157 (178)
393 TIGR01425 SRP54_euk signal rec 98.4 3.7E-06 7.9E-11 63.2 10.1 109 17-132 100-253 (429)
394 KOG1534 Putative transcription 98.4 4.2E-06 9.2E-11 56.2 8.2 117 60-177 97-250 (273)
395 cd01854 YjeQ_engC YjeQ/EngC. 98.3 1.4E-06 3.1E-11 62.6 5.7 57 18-75 162-227 (287)
396 TIGR02475 CobW cobalamin biosy 98.3 5.4E-06 1.2E-10 60.9 8.6 24 17-40 4-27 (341)
397 KOG2423 Nucleolar GTPase [Gene 98.3 3.5E-07 7.5E-12 66.8 2.3 63 10-72 299-363 (572)
398 PRK00098 GTPase RsgA; Reviewed 98.3 2.5E-06 5.5E-11 61.6 6.0 55 18-73 165-228 (298)
399 COG1162 Predicted GTPases [Gen 98.3 1.9E-06 4.1E-11 61.3 5.0 54 19-75 166-230 (301)
400 PF09547 Spore_IV_A: Stage IV 98.2 4E-05 8.7E-10 57.0 11.7 24 15-38 15-38 (492)
401 KOG2484 GTPase [General functi 98.2 9.3E-07 2E-11 64.5 3.2 57 15-71 250-307 (435)
402 PRK14722 flhF flagellar biosyn 98.1 2.1E-05 4.6E-10 58.2 8.8 118 15-132 135-295 (374)
403 PF00448 SRP54: SRP54-type pro 98.1 1.5E-05 3.3E-10 54.0 7.2 67 60-133 83-155 (196)
404 PF03266 NTPase_1: NTPase; In 98.1 2.4E-05 5.2E-10 51.7 7.8 21 19-39 1-21 (168)
405 PRK13695 putative NTPase; Prov 98.1 0.00025 5.4E-09 47.2 12.8 22 18-39 1-22 (174)
406 cd03115 SRP The signal recogni 98.1 7.9E-05 1.7E-09 49.5 10.2 67 60-133 82-154 (173)
407 PF06858 NOG1: Nucleolar GTP-b 98.1 1.6E-05 3.5E-10 42.0 5.1 44 84-129 13-58 (58)
408 COG1419 FlhF Flagellar GTP-bin 98.0 1.9E-05 4E-10 58.4 6.5 109 16-131 202-351 (407)
409 cd01983 Fer4_NifH The Fer4_Nif 98.0 7E-05 1.5E-09 44.4 8.1 69 20-97 2-71 (99)
410 PRK00771 signal recognition pa 98.0 5.6E-05 1.2E-09 57.3 9.0 109 16-131 94-245 (437)
411 cd00009 AAA The AAA+ (ATPases 98.0 0.00011 2.4E-09 46.9 9.3 35 7-41 9-43 (151)
412 PRK12727 flagellar biosynthesi 98.0 4.2E-05 9.1E-10 58.9 7.7 110 15-132 348-498 (559)
413 PRK11889 flhF flagellar biosyn 98.0 5.1E-05 1.1E-09 56.4 7.9 111 16-133 240-392 (436)
414 COG1162 Predicted GTPases [Gen 98.0 6.9E-05 1.5E-09 53.5 8.3 90 82-177 77-166 (301)
415 PF05621 TniB: Bacterial TniB 98.0 5.1E-05 1.1E-09 54.2 7.3 115 5-128 49-190 (302)
416 COG3523 IcmF Type VI protein s 97.9 6.8E-05 1.5E-09 62.7 9.0 112 19-132 127-270 (1188)
417 COG3640 CooC CO dehydrogenase 97.9 3.1E-05 6.7E-10 53.1 5.2 63 62-131 135-198 (255)
418 KOG2485 Conserved ATP/GTP bind 97.9 2.8E-05 6E-10 55.4 5.0 57 15-71 141-206 (335)
419 PF13207 AAA_17: AAA domain; P 97.8 1.7E-05 3.8E-10 49.4 3.1 22 19-40 1-22 (121)
420 KOG1533 Predicted GTPase [Gene 97.8 1.8E-05 3.9E-10 54.1 3.1 71 60-133 96-178 (290)
421 PRK10751 molybdopterin-guanine 97.8 6.6E-05 1.4E-09 49.7 5.7 51 16-72 5-55 (173)
422 COG0541 Ffh Signal recognition 97.8 7.9E-05 1.7E-09 55.5 6.6 95 15-109 98-237 (451)
423 PRK10867 signal recognition pa 97.8 0.00019 4.1E-09 54.4 8.6 65 60-131 183-253 (433)
424 KOG2743 Cobalamin synthesis pr 97.8 0.00044 9.4E-09 49.3 9.8 129 13-144 53-237 (391)
425 PRK08118 topology modulation p 97.8 2.1E-05 4.5E-10 52.0 3.2 23 18-40 2-24 (167)
426 PRK07261 topology modulation p 97.8 2.1E-05 4.7E-10 52.2 3.2 23 18-40 1-23 (171)
427 KOG0780 Signal recognition par 97.8 2.9E-05 6.4E-10 56.9 4.0 96 15-110 99-239 (483)
428 COG0563 Adk Adenylate kinase a 97.8 2.2E-05 4.8E-10 52.4 3.2 23 18-40 1-23 (178)
429 PRK14721 flhF flagellar biosyn 97.8 5.5E-05 1.2E-09 56.9 5.5 110 16-132 190-340 (420)
430 KOG0469 Elongation factor 2 [T 97.8 4E-05 8.7E-10 58.1 4.6 125 15-144 17-179 (842)
431 PRK05703 flhF flagellar biosyn 97.8 0.00016 3.5E-09 54.8 8.0 109 18-133 222-372 (424)
432 TIGR00959 ffh signal recogniti 97.8 0.00016 3.4E-09 54.8 7.6 65 60-131 182-252 (428)
433 PF13555 AAA_29: P-loop contai 97.8 3.3E-05 7.2E-10 41.8 3.0 20 19-38 25-44 (62)
434 PRK12724 flagellar biosynthesi 97.8 0.00012 2.5E-09 55.0 6.8 110 17-133 223-374 (432)
435 PRK14723 flhF flagellar biosyn 97.7 9.2E-05 2E-09 59.5 6.4 22 18-39 186-207 (767)
436 PF13671 AAA_33: AAA domain; P 97.7 3E-05 6.4E-10 49.8 2.9 20 20-39 2-21 (143)
437 PRK06995 flhF flagellar biosyn 97.7 8.1E-05 1.8E-09 57.0 5.5 23 17-39 256-278 (484)
438 COG1136 SalX ABC-type antimicr 97.7 3.2E-05 7E-10 53.1 3.0 26 16-41 30-55 (226)
439 PRK12726 flagellar biosynthesi 97.7 0.00011 2.4E-09 54.4 5.9 24 15-38 204-227 (407)
440 PRK12723 flagellar biosynthesi 97.7 0.00076 1.6E-08 50.5 10.3 110 16-132 173-326 (388)
441 COG1126 GlnQ ABC-type polar am 97.7 5.4E-05 1.2E-09 51.3 3.7 28 15-42 26-53 (240)
442 COG1116 TauB ABC-type nitrate/ 97.7 3.8E-05 8.3E-10 53.2 3.0 25 17-41 29-53 (248)
443 cd03116 MobB Molybdenum is an 97.7 0.00012 2.6E-09 48.0 5.1 48 19-72 3-50 (159)
444 cd02038 FleN-like FleN is a me 97.7 0.00093 2E-08 42.8 9.2 102 21-130 4-109 (139)
445 cd02042 ParA ParA and ParB of 97.7 0.00029 6.3E-09 42.6 6.6 81 20-108 2-84 (104)
446 cd04178 Nucleostemin_like Nucl 97.7 0.00013 2.9E-09 48.4 5.4 45 86-133 1-45 (172)
447 cd02019 NK Nucleoside/nucleoti 97.7 5.7E-05 1.2E-09 42.2 3.0 21 20-40 2-22 (69)
448 PF13521 AAA_28: AAA domain; P 97.6 3.3E-05 7.1E-10 50.9 2.3 22 19-40 1-22 (163)
449 PRK05480 uridine/cytidine kina 97.6 5.9E-05 1.3E-09 51.8 3.5 26 14-39 3-28 (209)
450 PF00005 ABC_tran: ABC transpo 97.6 5.8E-05 1.2E-09 48.1 3.0 26 16-41 10-35 (137)
451 PF04665 Pox_A32: Poxvirus A32 97.6 5.9E-05 1.3E-09 52.5 3.0 27 14-40 10-36 (241)
452 cd01130 VirB11-like_ATPase Typ 97.6 0.0001 2.2E-09 49.7 3.8 33 7-40 16-48 (186)
453 PRK08233 hypothetical protein; 97.6 8.3E-05 1.8E-09 49.7 3.4 24 16-39 2-25 (182)
454 KOG3347 Predicted nucleotide k 97.6 6.5E-05 1.4E-09 47.9 2.6 26 15-40 5-30 (176)
455 PRK06731 flhF flagellar biosyn 97.6 0.00042 9.1E-09 49.3 6.9 111 16-133 74-226 (270)
456 PF05673 DUF815: Protein of un 97.6 0.00064 1.4E-08 47.3 7.5 28 12-39 47-74 (249)
457 COG0552 FtsY Signal recognitio 97.5 0.00021 4.6E-09 51.6 5.3 110 15-131 137-297 (340)
458 TIGR00235 udk uridine kinase. 97.5 8.8E-05 1.9E-09 50.8 3.4 25 15-39 4-28 (207)
459 PF03205 MobB: Molybdopterin g 97.5 8.1E-05 1.8E-09 47.7 2.9 21 19-39 2-22 (140)
460 PRK14530 adenylate kinase; Pro 97.5 0.0001 2.2E-09 50.9 3.4 23 17-39 3-25 (215)
461 smart00382 AAA ATPases associa 97.5 0.00011 2.3E-09 46.6 3.4 26 17-42 2-27 (148)
462 PRK06217 hypothetical protein; 97.5 9.3E-05 2E-09 49.7 3.2 23 18-40 2-24 (183)
463 TIGR00554 panK_bact pantothena 97.5 0.00012 2.6E-09 52.6 3.8 31 8-38 53-83 (290)
464 PRK13851 type IV secretion sys 97.5 0.00011 2.4E-09 54.1 3.7 26 15-40 160-185 (344)
465 PF00004 AAA: ATPase family as 97.5 8.9E-05 1.9E-09 46.7 2.9 21 20-40 1-21 (132)
466 cd00071 GMPK Guanosine monopho 97.5 9.6E-05 2.1E-09 47.2 3.0 21 20-40 2-22 (137)
467 cd00820 PEPCK_HprK Phosphoenol 97.5 0.00011 2.3E-09 44.6 2.8 22 17-38 15-36 (107)
468 PRK10078 ribose 1,5-bisphospho 97.5 0.00011 2.4E-09 49.5 3.2 23 19-41 4-26 (186)
469 cd03111 CpaE_like This protein 97.5 0.00078 1.7E-08 41.0 6.6 98 23-127 6-106 (106)
470 COG3839 MalK ABC-type sugar tr 97.5 9.8E-05 2.1E-09 53.9 3.0 23 19-41 31-53 (338)
471 PF13238 AAA_18: AAA domain; P 97.5 0.0001 2.2E-09 46.2 2.8 21 20-40 1-21 (129)
472 TIGR02322 phosphon_PhnN phosph 97.5 0.0001 2.3E-09 49.2 2.9 22 19-40 3-24 (179)
473 PRK05439 pantothenate kinase; 97.5 0.00015 3.4E-09 52.4 3.9 34 6-39 75-108 (311)
474 PRK01889 GTPase RsgA; Reviewed 97.5 0.00013 2.8E-09 54.2 3.5 25 18-42 196-220 (356)
475 PRK13833 conjugal transfer pro 97.5 0.00056 1.2E-08 49.9 6.7 25 16-40 143-167 (323)
476 PRK03839 putative kinase; Prov 97.5 0.00013 2.8E-09 48.9 3.2 22 19-40 2-23 (180)
477 PRK14737 gmk guanylate kinase; 97.5 0.00013 2.8E-09 49.1 3.2 26 16-41 3-28 (186)
478 PF13191 AAA_16: AAA ATPase do 97.5 0.00013 2.8E-09 48.8 3.2 26 13-38 20-45 (185)
479 COG3840 ThiQ ABC-type thiamine 97.4 0.00013 2.8E-09 48.4 3.0 25 15-39 23-47 (231)
480 PRK14738 gmk guanylate kinase; 97.4 0.00015 3.2E-09 49.7 3.4 26 15-40 11-36 (206)
481 PHA00729 NTP-binding motif con 97.4 0.00023 5E-09 49.1 4.2 30 10-39 10-39 (226)
482 TIGR01360 aden_kin_iso1 adenyl 97.4 0.00015 3.2E-09 48.8 3.3 22 17-38 3-24 (188)
483 cd02023 UMPK Uridine monophosp 97.4 0.00012 2.6E-09 49.8 2.9 21 20-40 2-22 (198)
484 PF07728 AAA_5: AAA domain (dy 97.4 0.00014 3.1E-09 46.4 3.0 21 19-39 1-21 (139)
485 PLN02674 adenylate kinase 97.4 0.00016 3.4E-09 50.6 3.3 25 15-39 29-53 (244)
486 cd01129 PulE-GspE PulE/GspE Th 97.4 0.0012 2.6E-08 47.0 7.8 31 10-40 73-103 (264)
487 COG4525 TauB ABC-type taurine 97.4 0.00014 3.1E-09 48.7 2.8 23 17-39 31-53 (259)
488 COG3638 ABC-type phosphate/pho 97.4 0.00015 3.2E-09 49.9 2.9 22 18-39 31-52 (258)
489 TIGR03263 guanyl_kin guanylate 97.4 0.00015 3.3E-09 48.4 3.0 22 19-40 3-24 (180)
490 cd01131 PilT Pilus retraction 97.4 0.00014 3.1E-09 49.4 2.9 22 19-40 3-24 (198)
491 PTZ00301 uridine kinase; Provi 97.4 0.00018 3.9E-09 49.4 3.3 23 16-38 2-24 (210)
492 PRK06547 hypothetical protein; 97.4 0.0003 6.5E-09 46.7 4.2 30 11-40 9-38 (172)
493 PRK14531 adenylate kinase; Pro 97.4 0.00018 4E-09 48.3 3.3 22 18-39 3-24 (183)
494 cd03238 ABC_UvrA The excision 97.4 0.00018 3.8E-09 48.0 3.1 25 15-39 19-43 (176)
495 cd03222 ABC_RNaseL_inhibitor T 97.4 0.00017 3.7E-09 48.1 3.0 27 15-41 23-49 (177)
496 cd02025 PanK Pantothenate kina 97.4 0.00014 3.1E-09 50.3 2.7 20 20-39 2-21 (220)
497 PRK14532 adenylate kinase; Pro 97.4 0.00018 4E-09 48.4 3.2 22 18-39 1-22 (188)
498 PRK13900 type IV secretion sys 97.4 0.00015 3.2E-09 53.2 2.8 25 15-39 158-182 (332)
499 COG2804 PulE Type II secretory 97.4 0.00075 1.6E-08 51.5 6.4 88 9-98 250-340 (500)
500 PRK13949 shikimate kinase; Pro 97.4 0.00019 4.2E-09 47.5 3.0 21 19-39 3-23 (169)
No 1
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=7.7e-39 Score=214.19 Aligned_cols=180 Identities=62% Similarity=1.097 Sum_probs=155.7
Q ss_pred CccchHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhh
Q 030149 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
||..++.++.+.+..+.++|+++|++|||||||++++..+.+..+.||.+.+...+.+.+..+.+||+||++.+..+|..
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~ 80 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 78778777777777888999999999999999999999888877889999888888888999999999999999999999
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
+++++|++|+|+|+++++++.....++..++......+.|+++++||+|+......+++.+.+.........+.++++||
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccC
Confidence 99999999999999999999998888888766544467999999999999877666777766654443444566889999
Q ss_pred cCCCChHHHHHHHHHHHhhc
Q 030149 161 IKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~~ 180 (182)
++|+|++++|++|.+.+.++
T Consensus 161 ~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred CCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999988765
No 2
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=1.8e-38 Score=212.67 Aligned_cols=180 Identities=57% Similarity=1.022 Sum_probs=155.7
Q ss_pred CccchHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhh
Q 030149 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
||.++.+++++.+..+.++|+++|++|+|||||++++..+.+..+.||.+.+...+...+..+.+|||||++.+...+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~ 80 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH 80 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 88889999999988889999999999999999999998888777888888877778888999999999999999999999
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
+++.+|++|+|+|++++++++....++..++......+.|+++|+||.|+.+....+++...++........+.++++||
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa 160 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA 160 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeC
Confidence 99999999999999999999998888887765433457899999999999766566667666665444455667889999
Q ss_pred cCCCChHHHHHHHHHHHhhc
Q 030149 161 IKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~~ 180 (182)
++|.|++++|++|.+.+.+.
T Consensus 161 ~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 161 TTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999877654
No 3
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=9.2e-37 Score=203.41 Aligned_cols=170 Identities=64% Similarity=1.100 Sum_probs=144.5
Q ss_pred hhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 9 ~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
++..++.+.++|+++|++|+|||||++++..+.+..+.||.+.....+.+....+.+|||||++.+..++..+++++|++
T Consensus 5 ~~~~~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~i 84 (175)
T smart00177 5 FSKLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGL 84 (175)
T ss_pred hhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 34445577899999999999999999999877777788898887777778889999999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|+|++++++++....++..+.......+.|+++|+||+|+.+....+++.+.+.........+.++++||++|+|+++
T Consensus 85 i~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 85 IFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence 99999999999999999998887654445789999999999976655667766665554455566788999999999999
Q ss_pred HHHHHHHHHh
Q 030149 169 GLDWLSNTLK 178 (182)
Q Consensus 169 l~~~l~~~~~ 178 (182)
+|++|.+.+.
T Consensus 165 ~~~~l~~~~~ 174 (175)
T smart00177 165 GLTWLSNNLK 174 (175)
T ss_pred HHHHHHHHhc
Confidence 9999987753
No 4
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=8.6e-37 Score=202.22 Aligned_cols=164 Identities=57% Similarity=1.056 Sum_probs=140.1
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
++..+.++|+++|++|+|||||++++..+.+..+.||.+.....+...+..+.+|||||++.+..++..+++++|++|+|
T Consensus 4 ~~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 4 LFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred ccCCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 45567899999999999999999999888877788888887777777889999999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
+|++++.++.....++...+......+.|+++|+||+|+.+....+++.+...........++++++||++|+|++++|+
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~ 163 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLT 163 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHH
Confidence 99999999999988888887654445789999999999976556666666655444444556799999999999999999
Q ss_pred HHHH
Q 030149 172 WLSN 175 (182)
Q Consensus 172 ~l~~ 175 (182)
+|.+
T Consensus 164 ~l~~ 167 (168)
T cd04149 164 WLSS 167 (168)
T ss_pred HHhc
Confidence 9864
No 5
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-37 Score=197.83 Aligned_cols=162 Identities=25% Similarity=0.339 Sum_probs=136.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE--EEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.+||+++|++|+|||+|+.+|..+.+.. +..|+|+.... +.+ ...++++|||+|+++|+.+...|++++|++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 577999999999999999999999999988 88899965543 444 5678999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccE-EEEecccCCCChHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWA-IFKTSAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~gi~~ 168 (182)
+|+|+++.+||..+..|+.++-++. ..++|.++|+||+|+.+. ..+....++.++...+.+ ++++||+++.|+++
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~---~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYA-SENVPKLLVGNKCDLTEK---RVVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhc-cCCCCeEEEeeccccHhh---eecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 9999999999999999999996654 467899999999999743 222222333344455666 99999999999999
Q ss_pred HHHHHHHHHhhc
Q 030149 169 GLDWLSNTLKSI 180 (182)
Q Consensus 169 l~~~l~~~~~~~ 180 (182)
.|..+...+.+.
T Consensus 163 ~F~~la~~lk~~ 174 (205)
T KOG0084|consen 163 AFLTLAKELKQR 174 (205)
T ss_pred HHHHHHHHHHHh
Confidence 999999888765
No 6
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=100.00 E-value=3.4e-35 Score=195.51 Aligned_cols=173 Identities=51% Similarity=0.927 Sum_probs=158.3
Q ss_pred hHHHhhhhcC-CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccC
Q 030149 5 FTRLFSSLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFP 83 (182)
Q Consensus 5 ~~~~~~~~~~-~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 83 (182)
|.+++++... .+..+|+++|..||||||+++++..+......||.+.+...+.+.+..+.+||.+|+..++..|..+++
T Consensus 1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~ 80 (175)
T PF00025_consen 1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ 80 (175)
T ss_dssp HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT
T ss_pred CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecc
Confidence 4567777765 899999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccccc-CCccEEEEecccC
Q 030149 84 NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIK-NRQWAIFKTSAIK 162 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~ 162 (182)
++|++|||+|.++++.+.+....+..++......+.|+++++||.|+.+....+++...+...... ...+.++.|||.+
T Consensus 81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~ 160 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKT 160 (175)
T ss_dssp TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccC
Confidence 999999999999999999999999999888777899999999999999888888888888766554 6788899999999
Q ss_pred CCChHHHHHHHHHHH
Q 030149 163 GEGLFEGLDWLSNTL 177 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~ 177 (182)
|+|+.+.++||.+++
T Consensus 161 g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 161 GEGVDEGLEWLIEQI 175 (175)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcC
Confidence 999999999999864
No 7
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-36 Score=194.46 Aligned_cols=165 Identities=21% Similarity=0.323 Sum_probs=145.1
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
.+.+..||+++|+.++||||||+++..+.+.. |.+|+|.......+ ..+++++|||+|+++|+.+.+.|++++.+
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 34567999999999999999999999999987 88899976655443 34789999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|+|+++..||+...+|+.++.......++.+++|+||.||.++ +++..+.+...++..+..|.++||+.|+||.
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk---rqvs~eEg~~kAkel~a~f~etsak~g~NVk 174 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK---RQVSIEEGERKAKELNAEFIETSAKAGENVK 174 (221)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch---hhhhHHHHHHHHHHhCcEEEEecccCCCCHH
Confidence 9999999999999999999999988877667899999999999854 6666666666677777789999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|..|...++..
T Consensus 175 ~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 175 QLFRRIAAALPGM 187 (221)
T ss_pred HHHHHHHHhccCc
Confidence 9999998888764
No 8
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=1.5e-35 Score=194.70 Aligned_cols=158 Identities=63% Similarity=1.102 Sum_probs=134.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT 97 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
+||+++|.+|||||||++++..+.+..+.||.+.....+.+....+.+||+||++.+...+..+++++|++++|+|++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999888887788888887777778889999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHH
Q 030149 98 ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
.+++....++..+.......+.|+++++||+|+......+++.+.+.........+.++++||++|.|++++|++|.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 999999988888776544457899999999999765455565555544444455677899999999999999999864
No 9
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-36 Score=194.91 Aligned_cols=162 Identities=25% Similarity=0.367 Sum_probs=137.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE--cC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY--NN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~--~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+||+++|+.++|||||+.++..++|.. ..||+|..+.+... .+ ++|.||||+|++++..+.+.|++++++.|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 467999999999999999999999999999 58899966555443 44 88999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|||+++.+||..++.|+..+.+... ++.-+.+||||+||.+. .++........+...++.|+++||++|.|++++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~---R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~i 158 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLER---REVEFEEAQAYAESQGLLFFETSAKTGENVNEI 158 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhc---ccccHHHHHHHHHhcCCEEEEEecccccCHHHH
Confidence 99999999999999999999976655 78888999999999762 222222223334557788999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
|..|.+.+...
T Consensus 159 f~~Ia~~lp~~ 169 (200)
T KOG0092|consen 159 FQAIAEKLPCS 169 (200)
T ss_pred HHHHHHhccCc
Confidence 99999998765
No 10
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=100.00 E-value=3.5e-35 Score=195.74 Aligned_cols=171 Identities=51% Similarity=0.924 Sum_probs=145.7
Q ss_pred hHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCC
Q 030149 5 FTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 84 (182)
+.++++..+..+..+|+++|++|+|||||++++..+.+..+.||.+.+...+.+.+..+.+||+||++.+...+..+++.
T Consensus 3 ~~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 82 (174)
T cd04153 3 FSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTN 82 (174)
T ss_pred hhHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhc
Confidence 45677766666789999999999999999999998888778888888888888889999999999999999999999999
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCC
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGE 164 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (182)
+|++++|+|+++++++.....++..+.......+.|+++++||+|+......+++.+.+.........++++++||++|+
T Consensus 83 ~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~ 162 (174)
T cd04153 83 TDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGE 162 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCC
Confidence 99999999999999988888888887765444579999999999997655566666666544444556789999999999
Q ss_pred ChHHHHHHHHH
Q 030149 165 GLFEGLDWLSN 175 (182)
Q Consensus 165 gi~~l~~~l~~ 175 (182)
|+++++++|.+
T Consensus 163 gi~e~~~~l~~ 173 (174)
T cd04153 163 GLPEGLDWIAS 173 (174)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 11
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=6.9e-35 Score=194.23 Aligned_cols=163 Identities=53% Similarity=0.944 Sum_probs=139.1
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++.+.++|+++|++|+|||||++++.+..+..+.||.+.....+.+++..+.+|||||++.+..++..+++.+|++++|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVV 89 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 44677999999999999999999999887767888888777777888899999999999998889999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
|++++.++.....++..++......+.|+++|+||+|+.+....+++.+.+.........++++++||++|.|++++|++
T Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 169 (173)
T cd04154 90 DSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDW 169 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHH
Confidence 99999999988888888766544568999999999999766555666665554433456778999999999999999999
Q ss_pred HHH
Q 030149 173 LSN 175 (182)
Q Consensus 173 l~~ 175 (182)
+.+
T Consensus 170 l~~ 172 (173)
T cd04154 170 LVD 172 (173)
T ss_pred Hhc
Confidence 864
No 12
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=2.2e-34 Score=191.01 Aligned_cols=161 Identities=54% Similarity=0.950 Sum_probs=136.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE 98 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
||+++|.+|||||||++++.+..+..+.||.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|+|+++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 68999999999999999999888777888988777778888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccc-cCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 99 RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKI-KNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
+++....|+..+.......+.|+++|+||+|+.+....++..+....... ....+.++++||++|.|++++|++|.+.+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 99999999998876554456899999999999765555655554432211 12345789999999999999999999876
Q ss_pred hh
Q 030149 178 KS 179 (182)
Q Consensus 178 ~~ 179 (182)
..
T Consensus 161 ~~ 162 (169)
T cd04158 161 VA 162 (169)
T ss_pred hh
Confidence 54
No 13
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.6e-34 Score=194.06 Aligned_cols=172 Identities=40% Similarity=0.634 Sum_probs=147.4
Q ss_pred chHHHhhhhcC--CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhc
Q 030149 4 MFTRLFSSLFG--NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCY 81 (182)
Q Consensus 4 ~~~~~~~~~~~--~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 81 (182)
||.++++ .+. ++.++|+++|.+|+|||||++++.++.+..+.||.+.+...+..++..+.+||+||+..+...+..+
T Consensus 3 ~~~~~~~-~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 81 (184)
T smart00178 3 WFYDILA-SLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDY 81 (184)
T ss_pred HHHHHHH-HhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHH
Confidence 6788888 553 8889999999999999999999998887777788888777888889999999999999989999999
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccccc-------CCccE
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIK-------NRQWA 154 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~ 154 (182)
++++|++++|+|+++++++.....++..++......+.|+++|+||+|+......+++.+.++..... .+.+.
T Consensus 82 ~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~ 161 (184)
T smart00178 82 FPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLE 161 (184)
T ss_pred hCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeE
Confidence 99999999999999999998888888887765444679999999999998766778887777644321 24566
Q ss_pred EEEecccCCCChHHHHHHHHHH
Q 030149 155 IFKTSAIKGEGLFEGLDWLSNT 176 (182)
Q Consensus 155 ~~~~S~~~~~gi~~l~~~l~~~ 176 (182)
+++|||++|+|+++++++|...
T Consensus 162 i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 162 VFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEEeecccCCChHHHHHHHHhh
Confidence 9999999999999999999865
No 14
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-34 Score=186.07 Aligned_cols=180 Identities=63% Similarity=1.109 Sum_probs=172.5
Q ss_pred CccchHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhh
Q 030149 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
||..++++++.++..+..+|+++|--++||||++.++--+++....||+|.+.+.+.+++.++.+||..|++.++.+|..
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~ 80 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH 80 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence 88999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
|+++.+++|||+|.++.+++.+.+..+..++......+.|++++.||.|++......++.+.+.........+-+-.|+|
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 99999999999999999999999999999988877789999999999999999999999999999888889999999999
Q ss_pred cCCCChHHHHHHHHHHHhhc
Q 030149 161 IKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~~ 180 (182)
.+|+|+.|.++++.+.+.+.
T Consensus 161 ~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred cccccHHHHHHHHHHHHhcc
Confidence 99999999999999998764
No 15
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.7e-34 Score=193.81 Aligned_cols=160 Identities=21% Similarity=0.275 Sum_probs=129.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.+||+++|+.|+|||||+.++..+.+.. +.++.+... ..+.+++ ..+.+|||+|++.+..++..+++++|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 456999999999999999999999887765 556665443 3344444 78899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|||++++++|+.+..|+..+.... ++.|+++|+||+|+... ...++... + ++..++++++|||++|.||+
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~-~----a~~~~~~~~e~SAk~g~~V~ 156 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQA-Y----AERNGMTFFEVSPLCNFNIT 156 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHH-H----HHHcCCEEEEecCCCCCCHH
Confidence 9999999999999999988886543 57999999999999642 22222222 2 23346789999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 030149 168 EGLDWLSNTLKSIG 181 (182)
Q Consensus 168 ~l~~~l~~~~~~~~ 181 (182)
++|+++.+.+....
T Consensus 157 ~~F~~l~~~i~~~~ 170 (189)
T cd04121 157 ESFTELARIVLMRH 170 (189)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998876543
No 16
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=100.00 E-value=7e-34 Score=192.10 Aligned_cols=176 Identities=41% Similarity=0.664 Sum_probs=146.7
Q ss_pred ccchHHHhhhh-cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhh
Q 030149 2 GIMFTRLFSSL-FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
.-++.++++.. ...+..+|+++|++|||||||++++.+..+..+.||.+.....+.+++..+.+||+||+..+...+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~ 82 (190)
T cd00879 3 FDWFYNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKD 82 (190)
T ss_pred HHHHHHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 34566666654 23678999999999999999999999888877888888888888888999999999999988888888
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccc-----------c
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKI-----------K 149 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------~ 149 (182)
+++.+|++++|+|+++.+++.....++..+.......+.|+++++||+|+......+++.+.+..... .
T Consensus 83 ~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (190)
T cd00879 83 YFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSG 162 (190)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccC
Confidence 99999999999999999899888888888876655567999999999999776667777766654322 1
Q ss_pred CCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 150 NRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 150 ~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
...+.+++|||++|+|++++|++|.+.+
T Consensus 163 ~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 163 IRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred ceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 2346799999999999999999998753
No 17
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=3.5e-34 Score=193.96 Aligned_cols=158 Identities=20% Similarity=0.268 Sum_probs=125.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+.|+++|+.|+|||||++++..+.+.. +.+|.+... ..+.+++ ..+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 469999999999999999999998876 667776443 3455544 78899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
|++++++|+.+..|+..+. .....+.|+++|+||+|+...... .+..+.+.. +..++.|+++||++|.||+++|+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~-~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~---~~~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 81 DITKKETFDDLPKWMKMID-KYASEDAELLLVGNKLDCETDREISRQQGEKFAQ---QITGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred ECcCHHHHHHHHHHHHHHH-HhCCCCCcEEEEEECcccccccccCHHHHHHHHH---hcCCCEEEEecCCCCCCHHHHHH
Confidence 9999999999998887654 334467999999999999642211 111111211 11346799999999999999999
Q ss_pred HHHHHHhh
Q 030149 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~~~~ 179 (182)
++.+.+.+
T Consensus 157 ~l~~~~~~ 164 (202)
T cd04120 157 KLVDDILK 164 (202)
T ss_pred HHHHHHHH
Confidence 99988754
No 18
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=100.00 E-value=9.1e-34 Score=186.22 Aligned_cols=157 Identities=76% Similarity=1.278 Sum_probs=131.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE 98 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
||+++|++++|||||++++..+.+..+.||.+.+...+.+.+..+.+|||||++.+..++..+++.+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 68999999999999999998888777788888777777788899999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHH
Q 030149 99 RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
++.....++...++.....+.|+++++||+|+.+.....++...+........+.+++++||++|.|+++++++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 88777777766655443457999999999999765455666555544334445568999999999999999999864
No 19
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=7.1e-35 Score=186.04 Aligned_cols=167 Identities=17% Similarity=0.260 Sum_probs=137.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE--EEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
+..-++|+++|++|+|||||++++...+|.. +..|+|....+ +..+ -..+++|||+|+++|..+...+++.+|++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 3556999999999999999999999999987 77888855444 3333 46789999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccC---CCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELR---GAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
++|+|++++++|+.+..|..+++.+.... .-|+|++|||+|+.+......-.+..+.......++||||+||+...|
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N 165 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN 165 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence 99999999999999999999999875533 469999999999965322222223333344455688999999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 030149 166 LFEGLDWLSNTLKSI 180 (182)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (182)
|.+.|+.+...+.+.
T Consensus 166 V~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 166 VDEAFEEIARRALAN 180 (210)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999877653
No 20
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=6.6e-34 Score=194.60 Aligned_cols=161 Identities=24% Similarity=0.295 Sum_probs=129.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT 97 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
+||+++|.+|+|||||++++..+.+..+.||.+.......+....+.+|||+|++.+..++..+++.+|++|+|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999987778888877666666778899999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC----------------HHHHHHHhccccccC-----------
Q 030149 98 ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD----------------DAAVTEALELHKIKN----------- 150 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~----------------~~~~~~~~~~~~~~~----------- 150 (182)
++|+.+..|+..+... ...+.|+++|+||+|+.+... ...+........++.
T Consensus 81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~ 159 (220)
T cd04126 81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL 159 (220)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence 9999999999887654 335789999999999964100 111111111111111
Q ss_pred ---CccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 151 ---RQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 151 ---~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
...+|++|||++|+||+++|..+.+.+..
T Consensus 160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 12679999999999999999999987754
No 21
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=3.5e-34 Score=190.42 Aligned_cols=161 Identities=17% Similarity=0.182 Sum_probs=127.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.++|+++|.+|+|||||++++..+.+.. +.||.+.... .+..+ ...+.+|||||++.+..++..+++.+|++++|+
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 4799999999999999999999988865 6777764332 34443 467899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
|++++.+|.....|+..+.......+.|+++|+||+|+.+.... .........+..++++++|||++|.||+++|++
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v---~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~ 158 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQV---TTEEGRNLAREFNCPFFETSAALRHYIDDAFHG 158 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCcc---CHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHH
Confidence 99999999999887776655444467999999999998643211 111111122334678999999999999999999
Q ss_pred HHHHHhhc
Q 030149 173 LSNTLKSI 180 (182)
Q Consensus 173 l~~~~~~~ 180 (182)
+...+.+.
T Consensus 159 l~~~~~~~ 166 (172)
T cd04141 159 LVREIRRK 166 (172)
T ss_pred HHHHHHHh
Confidence 99877653
No 22
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=3.9e-33 Score=187.18 Aligned_cols=165 Identities=46% Similarity=0.771 Sum_probs=133.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE-----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+.++|+++|++|||||||++++..+.+....||.+........ .+..+.+|||||++.+..++..+++.+|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999988887777777755554443 45789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccc-ccCCccEEEEecccCCCChHHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHK-IKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~S~~~~~gi~~l 169 (182)
|+|+++++++.....++..+.......+.|+++|+||+|+......+++........ .....++++++||++|+|++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 999999988888888887777655556799999999999975544455544333211 1223467999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
+++|.+.+.+.
T Consensus 162 ~~~l~~~l~~~ 172 (183)
T cd04152 162 LEKLYEMILKR 172 (183)
T ss_pred HHHHHHHHHHH
Confidence 99999888654
No 23
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=100.00 E-value=2.2e-33 Score=185.04 Aligned_cols=157 Identities=46% Similarity=0.814 Sum_probs=128.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--cccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEV--VSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSD 96 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 96 (182)
+|+++|++|||||||++++.+... ..+.||.+.....+...+..+.+|||||++.+..++..+++.+|++|+|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999998753 347888887777777788999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhc--ccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 97 TERLVIAKDEFHAILEEE--ELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~--~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
+.++.....++..+.... ...+.|+++|+||+|+.+.....++...+.........++++++||++|.|++++|++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 999888888877776542 225799999999999976545555555544332233456799999999999999999986
Q ss_pred H
Q 030149 175 N 175 (182)
Q Consensus 175 ~ 175 (182)
+
T Consensus 161 ~ 161 (162)
T cd04157 161 A 161 (162)
T ss_pred c
Confidence 5
No 24
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=6.4e-34 Score=189.10 Aligned_cols=160 Identities=16% Similarity=0.166 Sum_probs=124.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||+.++..+.+.. +.||.+.... .+.. ...++.+|||+|++++..++..+++++|++|+|+|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 689999999999999999999999875 7888874332 2333 45789999999999999999999999999999999
Q ss_pred CCCcchHHHH-HHHHHHHHhhcccCCCeEEEEeecCCCCCCCC-------HHHHHHHhccccccCCcc-EEEEecccCCC
Q 030149 94 SSDTERLVIA-KDEFHAILEEEELRGAVVLIFANKQDLPGALD-------DAAVTEALELHKIKNRQW-AIFKTSAIKGE 164 (182)
Q Consensus 94 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 164 (182)
++++++|+.+ ..|+..+.... .+.|+++|+||+|+.+... ...+............+. +|++|||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 9999999998 57887775443 4799999999999964311 001111111222233344 69999999999
Q ss_pred ChHHHHHHHHHHHhh
Q 030149 165 GLFEGLDWLSNTLKS 179 (182)
Q Consensus 165 gi~~l~~~l~~~~~~ 179 (182)
||+++|+.+.+.+.+
T Consensus 160 nV~~~F~~~~~~~~~ 174 (176)
T cd04133 160 NVKAVFDAAIKVVLQ 174 (176)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999987643
No 25
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-34 Score=186.72 Aligned_cols=162 Identities=23% Similarity=0.340 Sum_probs=139.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+-++|+++|++|||||+++.++..+.+.. +..|+|+... ++.. ....+++|||+|++.++.+...|++.+++++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~ 89 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIL 89 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeE
Confidence 567999999999999999999999999877 7778885544 4444 4578999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+|+++..||+++..|+..+-++ ...++|.++||||+|+.. .+.+..+.++..+...+.+|+|+||++|.||++.
T Consensus 90 LvyDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~---~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 90 LVYDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEE---KRQVSKERGEALAREYGIKFFETSAKTNFNIEEA 165 (207)
T ss_pred EEEEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeeccccccc---cccccHHHHHHHHHHhCCeEEEccccCCCCHHHH
Confidence 999999999999999988877555 446899999999999975 3555556666666777999999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
|-.|.+.+.++
T Consensus 166 F~~La~~i~~k 176 (207)
T KOG0078|consen 166 FLSLARDILQK 176 (207)
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 26
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=100.00 E-value=4.3e-33 Score=183.04 Aligned_cols=157 Identities=64% Similarity=1.077 Sum_probs=138.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE 98 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
||+++|++|||||||++++.+.....+.+|.+.+...+.+.+..+.+||+||++.+...+..++..+|++++|+|+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998777888999888888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHH
Q 030149 99 RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
++.....++..+.......+.|+++++||+|+......+++.+.+.........++++++||++|.|++++|++|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 99999999888877655568999999999999876666677666655444456778999999999999999999875
No 27
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=7.1e-34 Score=189.95 Aligned_cols=163 Identities=21% Similarity=0.237 Sum_probs=126.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
++..+||+++|++|+|||||+.++..+.+.. +.||.+.... .+.. ....+.+|||+|++.+..++..+++++|++|
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 3567899999999999999999999998866 7788774432 2333 4578999999999999999999999999999
Q ss_pred EEEeCCCcchHHHH-HHHHHHHHhhcccCCCeEEEEeecCCCCCCCC---------HHHHHHHhccccccCCc-cEEEEe
Q 030149 90 YVVDSSDTERLVIA-KDEFHAILEEEELRGAVVLIFANKQDLPGALD---------DAAVTEALELHKIKNRQ-WAIFKT 158 (182)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~ 158 (182)
+|+|++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+... ...+........++..+ .+|++|
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 99999999999997 57777765442 5789999999999854210 00111222223334445 479999
Q ss_pred cccCCCC-hHHHHHHHHHHHh
Q 030149 159 SAIKGEG-LFEGLDWLSNTLK 178 (182)
Q Consensus 159 S~~~~~g-i~~l~~~l~~~~~ 178 (182)
||++|+| |+++|..+.....
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 160 SALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999988643
No 28
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=8.5e-34 Score=191.52 Aligned_cols=162 Identities=17% Similarity=0.228 Sum_probs=124.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.+||+++|+.|+|||||+.++..+.+.. +.||.+.... .+.. ....+.+|||+|++.+..++..+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 45899999999999999999999998855 7888874432 2223 447899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHH-HHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHH--------HhccccccCCc-cEEEEecc
Q 030149 92 VDSSDTERLVIAKD-EFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTE--------ALELHKIKNRQ-WAIFKTSA 160 (182)
Q Consensus 92 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~--------~~~~~~~~~~~-~~~~~~S~ 160 (182)
+|++++++|+.+.. |...+... ..+.|+++|+||+|+.+.... +.+.+ ......+...+ ++++++||
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999975 55555433 247999999999999643211 11111 01111122233 57999999
Q ss_pred cCCCChHHHHHHHHHHHhh
Q 030149 161 IKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~ 179 (182)
++|+|++++|+.+.+.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999987754
No 29
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-34 Score=181.96 Aligned_cols=162 Identities=21% Similarity=0.285 Sum_probs=139.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE----EEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE----TVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+|++++|+.|+|||+|+.++..+.|.+ ...|+|+... +++....++++|||+|++.|+.....|++.+.+.|
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 467899999999999999999999999988 5557775443 34446789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+|+++.++|..+..|+.++.++ ...+..+++++||+||... +++.++..+.+++..++.++++||++++|++|.
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~-~~~NmvImLiGNKsDL~~r---R~Vs~EEGeaFA~ehgLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQH-SNENMVIMLIGNKSDLEAR---REVSKEEGEAFAREHGLIFMETSAKTAENVEEA 159 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHh-cCCCcEEEEEcchhhhhcc---ccccHHHHHHHHHHcCceeehhhhhhhhhHHHH
Confidence 999999999999999999998655 4578999999999999643 355555556666778889999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
|......+..+
T Consensus 160 F~nta~~Iy~~ 170 (216)
T KOG0098|consen 160 FINTAKEIYRK 170 (216)
T ss_pred HHHHHHHHHHH
Confidence 99988877653
No 30
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=100.00 E-value=1e-32 Score=181.57 Aligned_cols=157 Identities=46% Similarity=0.872 Sum_probs=130.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE-cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT 97 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
+|+++|++|+|||||++++.++.+....||.+.....+.. ....+.+||+||++.+...+..++..+|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 5899999999999999999999887778888876666655 457899999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcc-ccccCCccEEEEecccCCCChHHHHHHHHH
Q 030149 98 ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALEL-HKIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
.++.....++..++......+.|+++|+||+|+......+++...+.. ......+++++++||++|+|++++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 988988888888876544468999999999999765455666655432 222334567999999999999999999864
No 31
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=2.7e-33 Score=188.97 Aligned_cols=161 Identities=17% Similarity=0.200 Sum_probs=128.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+..+||+++|++|+|||||++++..+.+.. +.||.+.... .+.. ....+.+|||||++++..++..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 557899999999999999999999888764 6677764432 2233 44678899999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|++++++++....|+..+.+.....+.|+++|+||+|+.+.. ...+... .. +..+++++++||++|.|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~-~~----~~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQE-LA----KSFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH-HH----HHhCCEEEEeeCCCCCCHHH
Confidence 99999999999999988888766555688999999999986432 2112111 11 22346799999999999999
Q ss_pred HHHHHHHHHhhc
Q 030149 169 GLDWLSNTLKSI 180 (182)
Q Consensus 169 l~~~l~~~~~~~ 180 (182)
+|+++.+.+.+.
T Consensus 158 ~~~~l~~~l~~~ 169 (189)
T PTZ00369 158 AFYELVREIRKY 169 (189)
T ss_pred HHHHHHHHHHHH
Confidence 999999877653
No 32
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=3.4e-33 Score=184.90 Aligned_cols=157 Identities=19% Similarity=0.287 Sum_probs=125.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+||+++|++|+|||||++++..+.+.. +.+|.+.... .+..+ ...+.+|||||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 4799999999999999999999988766 5556664433 33443 46789999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|++++++++.+..|+..+... ..++.|+++|+||+|+.+... .++..+.. ...+++++++||++|+|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFA-----DENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence 9999999999999998877543 335789999999999965422 22222221 234568999999999999999
Q ss_pred HHHHHHHHhh
Q 030149 170 LDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~~~~ 179 (182)
|+.+...+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999987754
No 33
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=3.9e-33 Score=185.83 Aligned_cols=158 Identities=18% Similarity=0.181 Sum_probs=120.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||++++..+.+.. +.||.+.... .+..++ ..+.+|||+|++.+..++..+++++|++|+|+|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 689999999999999999999988854 8888875443 444444 678999999999999999999999999999999
Q ss_pred CCCcchHHHHHH-HHHHHHhhcccCCCeEEEEeecCCCCCCCCHHH-H--------HHHhccccccCC-ccEEEEecccC
Q 030149 94 SSDTERLVIAKD-EFHAILEEEELRGAVVLIFANKQDLPGALDDAA-V--------TEALELHKIKNR-QWAIFKTSAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-~--------~~~~~~~~~~~~-~~~~~~~S~~~ 162 (182)
++++++|+.+.. |+..+... . ++.|+++|+||+|+.+.....+ . .....+...+.. .+.|+++||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~-~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHH-C-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999975 55555332 2 4789999999999864311100 0 000111112222 36799999999
Q ss_pred CCChHHHHHHHHHHH
Q 030149 163 GEGLFEGLDWLSNTL 177 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~ 177 (182)
|.|++++|+.+..+.
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998754
No 34
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=100.00 E-value=1e-32 Score=182.63 Aligned_cols=157 Identities=36% Similarity=0.600 Sum_probs=133.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE 98 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
+|+++|++|||||||++++.+.....+.||.+.....+...+..+.+||+||++.+..++..+++++|++++|+|++++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 48999999999999999999774445888999888888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccccc---CCccEEEEecccCC------CChHHH
Q 030149 99 RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIK---NRQWAIFKTSAIKG------EGLFEG 169 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~S~~~~------~gi~~l 169 (182)
++.....++..+.......+.|+++|+||+|+.......++.+.+...... ...+.+++|||++| .|+++.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence 999999999888765444679999999999998776666666665433321 23467999999998 899999
Q ss_pred HHHHHH
Q 030149 170 LDWLSN 175 (182)
Q Consensus 170 ~~~l~~ 175 (182)
|+||..
T Consensus 161 ~~wl~~ 166 (167)
T cd04161 161 LRWLLA 166 (167)
T ss_pred HHHHhc
Confidence 999964
No 35
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=100.00 E-value=1.5e-32 Score=172.11 Aligned_cols=167 Identities=46% Similarity=0.861 Sum_probs=154.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
..+.++|+++|..||||||+++++.+.......||.++...++.++++.+++||.+|+..++..|..|+..+|++|+|+|
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvD 92 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVD 92 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEE
Confidence 46689999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccc-cCCccEEEEecccCCCChHHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKI-KNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
.+++.++++....+...+........|++++.||.|+......+++..++..... +..+++++.||+.+|+++.+-++|
T Consensus 93 ssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidW 172 (185)
T KOG0073|consen 93 SSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDW 172 (185)
T ss_pred CchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHH
Confidence 9999999999999988887777778999999999999988888999888876555 778999999999999999999999
Q ss_pred HHHHHhhc
Q 030149 173 LSNTLKSI 180 (182)
Q Consensus 173 l~~~~~~~ 180 (182)
|.+.+.++
T Consensus 173 L~~~l~~r 180 (185)
T KOG0073|consen 173 LCDDLMSR 180 (185)
T ss_pred HHHHHHHH
Confidence 99887654
No 36
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=6.4e-33 Score=184.03 Aligned_cols=161 Identities=22% Similarity=0.323 Sum_probs=126.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
||+++|++|||||||++++..+.+.. +.||.+.... .+... ...+++|||||++.+..++..+++++|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999998875 7788875543 33333 4679999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
+++++++.....|+..+.+.......|+++|+||+|+.+........+.. .......+.+++++||++|.|++++|+.+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l 160 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDA-IKLAAEMQAEYWSVSALSGENVREFFFRV 160 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHH-HHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999988888665444467899999999986442211111111 11112234579999999999999999999
Q ss_pred HHHHhhc
Q 030149 174 SNTLKSI 180 (182)
Q Consensus 174 ~~~~~~~ 180 (182)
.+.+.++
T Consensus 161 ~~~~~~~ 167 (170)
T cd04108 161 AALTFEL 167 (170)
T ss_pred HHHHHHc
Confidence 9988765
No 37
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-32 Score=167.54 Aligned_cols=179 Identities=55% Similarity=1.029 Sum_probs=170.9
Q ss_pred CccchHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhh
Q 030149 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
||-++..+++..+..+.++|+.+|-.++||||++..+.-++.....||.|++.+++.++...|+.||.+|++..+.+|..
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrh 80 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 80 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHh
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
|+....++|+|+|..+.+..++.+..+..++......+.|+++..||.|++....+.++.+.++....+...|-+.++++
T Consensus 81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a 160 (180)
T KOG0071|consen 81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCA 160 (180)
T ss_pred hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccc
Confidence 99999999999999999999999999999999888889999999999999999999999999998888999999999999
Q ss_pred cCCCChHHHHHHHHHHHhh
Q 030149 161 IKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~ 179 (182)
.+|.|+.|-+.+|...+..
T Consensus 161 ~~gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 161 LSGDGLKEGLSWLSNNLKE 179 (180)
T ss_pred ccchhHHHHHHHHHhhccC
Confidence 9999999999999877653
No 38
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=4.1e-33 Score=186.85 Aligned_cols=159 Identities=22% Similarity=0.404 Sum_probs=127.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEEc------------CeEEEEEEcCCCCCCcchhhh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN------------NIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~------------~~~~~~~D~~g~~~~~~~~~~ 80 (182)
+.+||+++|++|+|||||++++..+.+.. +.+|.+.... .+.+. ...+.+|||||++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 56899999999999999999999988866 6777764433 23322 378999999999999999999
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEe
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
+++++|++++|+|+++++++..+..|+..+......++.|+++|+||+|+.+. ...++. ..+. ...+++++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQA-KALA----DKYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHH-HHHH----HHcCCeEEEE
Confidence 99999999999999999999999999888766544457899999999999643 222222 2222 2234679999
Q ss_pred cccCCCChHHHHHHHHHHHhh
Q 030149 159 SAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~~~~ 179 (182)
||++|.|++++|+.|.+.+.+
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999987754
No 39
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=100.00 E-value=1.6e-32 Score=181.11 Aligned_cols=155 Identities=37% Similarity=0.638 Sum_probs=129.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT 97 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
.|+++|++|+|||||++++.+..+.. +.||.+.....+...+..+.+||+||++.+..++..+++.+|++++|+|.+++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~ 80 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS 80 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH
Confidence 37999999999999999999887655 78888877777777889999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcc-ccccCCccEEEEecccC------CCChHHHH
Q 030149 98 ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALEL-HKIKNRQWAIFKTSAIK------GEGLFEGL 170 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~S~~~------~~gi~~l~ 170 (182)
.++.....|+..+.... ++.|+++|+||+|+.......++...+.. ......++.++++||++ ++|++++|
T Consensus 81 ~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~ 158 (164)
T cd04162 81 ERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLL 158 (164)
T ss_pred HHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHH
Confidence 99998888888776432 58999999999999766555555544432 23345678899999988 99999999
Q ss_pred HHHHH
Q 030149 171 DWLSN 175 (182)
Q Consensus 171 ~~l~~ 175 (182)
+.+..
T Consensus 159 ~~~~~ 163 (164)
T cd04162 159 SQLIN 163 (164)
T ss_pred HHHhc
Confidence 98763
No 40
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=4.4e-33 Score=183.83 Aligned_cols=156 Identities=19% Similarity=0.236 Sum_probs=123.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc-eeEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
++|+++|++|+|||||++++..+.+.. +.||.+ .....+..++ ..+.+|||||++.+..++..+++++|++++|+|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 699999999999999999999888765 556655 2233344443 567899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
++++++++....|+..+.......+.|+++|+||+|+.+.... .+....+. +..+.+++++||++|.|++++|++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04136 82 ITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA----RQWGCPFYETSAKSKINVDEVFAD 157 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHHH
Confidence 9999999999998888876655568999999999998643211 11111221 122367999999999999999999
Q ss_pred HHHHH
Q 030149 173 LSNTL 177 (182)
Q Consensus 173 l~~~~ 177 (182)
+.+.+
T Consensus 158 l~~~~ 162 (163)
T cd04136 158 LVRQI 162 (163)
T ss_pred HHHhc
Confidence 98764
No 41
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4e-32 Score=184.91 Aligned_cols=159 Identities=23% Similarity=0.330 Sum_probs=126.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc---CeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+||+++|++|+|||||++++.++.+.. +.||.+... ..+.+. ...+.+|||||++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999988766 677877443 334443 56789999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhc---ccCCCeEEEEeecCCCCC--CCCHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 92 VDSSDTERLVIAKDEFHAILEEE---ELRGAVVLIFANKQDLPG--ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~iivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
+|++++++|+.+..|+..+.... ...+.|+++|+||+|+.+ ....++..+..... ...+++++||++|.|+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN----GFIGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc----CCceEEEEeCCCCCCH
Confidence 99999999999988887765432 235789999999999963 33334433332211 1256999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030149 167 FEGLDWLSNTLKSI 180 (182)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (182)
+++|++|.+.+.+.
T Consensus 157 ~e~f~~l~~~l~~~ 170 (201)
T cd04107 157 EEAMRFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988654
No 42
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=3.3e-32 Score=180.03 Aligned_cols=155 Identities=20% Similarity=0.332 Sum_probs=126.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|||||||++++..+.+.. +.+|.+.......+ ....+.+|||+|++.+..++..+++.+|++|+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 589999999999999999999877655 77788766555443 4578999999999998888888999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
|+++++++..+..|+..+..... +.|+++|+||+|+.+.....+.. . ..+...++++++||++|+|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~~~~~~~~~~-~----~~~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIKDRKVKAKQI-T----FHRKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcccccCCHHHH-H----HHHHcCCEEEEEeCCCCCChHHHHHH
Confidence 99999999999888888766543 89999999999997432222211 1 11234677999999999999999999
Q ss_pred HHHHHhh
Q 030149 173 LSNTLKS 179 (182)
Q Consensus 173 l~~~~~~ 179 (182)
|.+.+.+
T Consensus 154 l~~~~~~ 160 (166)
T cd00877 154 LARKLLG 160 (166)
T ss_pred HHHHHHh
Confidence 9988865
No 43
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.9e-32 Score=183.40 Aligned_cols=160 Identities=21% Similarity=0.271 Sum_probs=125.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|+.|+|||||++++..+.+.. +.||.+.... .+..++ ..+.+|||+|++.+..++..+++++|++++|+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999988876 8889886553 444444 67899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC---HHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD---DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
|++++++++.+..|+..+.... ....| ++|+||+|+..... .+.+.+ ..+......+++++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~-~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITK-QARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHH-HHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999988876542 23466 68899999963211 111211 111222334478999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
|+++.+.+.+.
T Consensus 158 f~~l~~~l~~~ 168 (182)
T cd04128 158 FKIVLAKAFDL 168 (182)
T ss_pred HHHHHHHHHhc
Confidence 99999887654
No 44
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.9e-33 Score=186.01 Aligned_cols=159 Identities=22% Similarity=0.231 Sum_probs=122.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++||+++|++|+|||||++++..+.+.. +.||.+.... .+.. ....+.+|||+|++.+..++..+++++|++|+|+
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 4789999999999999999999988865 7777764332 2333 4577899999999999999999999999999999
Q ss_pred eCCCcchHHHH-HHHHHHHHhhcccCCCeEEEEeecCCCCCCCC---------HHHHHHHhccccccCCcc-EEEEeccc
Q 030149 93 DSSDTERLVIA-KDEFHAILEEEELRGAVVLIFANKQDLPGALD---------DAAVTEALELHKIKNRQW-AIFKTSAI 161 (182)
Q Consensus 93 d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~S~~ 161 (182)
|++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+... ...+....+...++..++ +|++|||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999996 67777665542 4789999999999964210 001111122223334454 79999999
Q ss_pred CCCC-hHHHHHHHHHHH
Q 030149 162 KGEG-LFEGLDWLSNTL 177 (182)
Q Consensus 162 ~~~g-i~~l~~~l~~~~ 177 (182)
+|+| |+++|..+.+..
T Consensus 159 ~~~~~v~~~F~~~~~~~ 175 (178)
T cd04131 159 TSEKSVRDIFHVATMAC 175 (178)
T ss_pred cCCcCHHHHHHHHHHHH
Confidence 9995 999999998854
No 45
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=5.1e-33 Score=183.74 Aligned_cols=158 Identities=20% Similarity=0.234 Sum_probs=125.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+||+++|.+|+|||||++++..+.+.. +.||.+... ..+... ...+.+|||||++.+..++..+++.+|++++|+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 3689999999999999999999887765 566666332 234443 467789999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
|.+++.+++....|+..+.......+.|+++|+||+|+...... .+....+. +..+++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~~~~ 156 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA----RQWGCAFLETSAKAKINVNEIFY 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHH----HHhCCEEEEeeCCCCCCHHHHHH
Confidence 99999999999999998877655578999999999999643211 11112221 22346799999999999999999
Q ss_pred HHHHHHh
Q 030149 172 WLSNTLK 178 (182)
Q Consensus 172 ~l~~~~~ 178 (182)
++.+.+.
T Consensus 157 ~l~~~l~ 163 (164)
T cd04175 157 DLVRQIN 163 (164)
T ss_pred HHHHHhh
Confidence 9998764
No 46
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=2.3e-32 Score=187.93 Aligned_cols=157 Identities=20% Similarity=0.312 Sum_probs=129.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+||+++|++|+|||||++++..+.+.. +.||.+.......+ ....+.+|||+|++.+..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 677999999999999999999998888766 78888866555443 3479999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC-CHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL-DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
+|||+++++++..+..|+..+.... .+.|+++|+||+|+.... ..++. . + ....+++|+++||++|.|+++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~-~----~~~~~~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-T-F----HRKKNLQYYEISAKSNYNFEK 162 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH-H-H----HHhcCCEEEEcCCCCCCCHHH
Confidence 9999999999999999988886542 579999999999985322 22222 1 1 123457799999999999999
Q ss_pred HHHHHHHHHhh
Q 030149 169 GLDWLSNTLKS 179 (182)
Q Consensus 169 l~~~l~~~~~~ 179 (182)
+|++|.+.+.+
T Consensus 163 ~f~~l~~~~~~ 173 (219)
T PLN03071 163 PFLYLARKLAG 173 (219)
T ss_pred HHHHHHHHHHc
Confidence 99999988764
No 47
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=6e-33 Score=190.89 Aligned_cols=163 Identities=18% Similarity=0.206 Sum_probs=126.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
-..++|+++|+.|+|||||++++..+.+.. +.||.+.... .+.. ....+.+|||+|++.+..++..+++++|++|+
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 467899999999999999999999988876 7788764432 2333 45789999999999999999999999999999
Q ss_pred EEeCCCcchHHHH-HHHHHHHHhhcccCCCeEEEEeecCCCCCCCC---------HHHHHHHhccccccCCcc-EEEEec
Q 030149 91 VVDSSDTERLVIA-KDEFHAILEEEELRGAVVLIFANKQDLPGALD---------DAAVTEALELHKIKNRQW-AIFKTS 159 (182)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (182)
|||++++++|+.. ..|+..+.... ++.|+++|+||+|+.+... ...+.....+..+...++ .|++||
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 9999999999985 67777765432 4789999999999853210 011222222233344555 699999
Q ss_pred ccCCC-ChHHHHHHHHHHHhh
Q 030149 160 AIKGE-GLFEGLDWLSNTLKS 179 (182)
Q Consensus 160 ~~~~~-gi~~l~~~l~~~~~~ 179 (182)
|++|+ |++++|..+...+.+
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHH
Confidence 99998 899999999887654
No 48
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=9.4e-33 Score=182.99 Aligned_cols=156 Identities=24% Similarity=0.397 Sum_probs=125.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.++.+.. +.||.+.... .+.. ....+++|||||++.+..++..+++.+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999988765 6777775433 3333 4578899999999998889999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhccc----CCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 93 DSSDTERLVIAKDEFHAILEEEEL----RGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~----~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
|++++++++....|+..+...... .+.|+++|+||+|+.++ ...++.... . ...+.+++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-~----~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLW-A----ESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHH-H----HHcCCeEEEEECCCCCCH
Confidence 999999999999988888765442 57899999999999632 122222222 1 223467999999999999
Q ss_pred HHHHHHHHHHHh
Q 030149 167 FEGLDWLSNTLK 178 (182)
Q Consensus 167 ~~l~~~l~~~~~ 178 (182)
++++++|.+.+.
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 49
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=2.7e-32 Score=179.75 Aligned_cols=156 Identities=18% Similarity=0.207 Sum_probs=123.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+||+++|++|+|||||++++.++.+.. +.||.+... ..+..+ ...+.+|||||++++..++..+++.+|++++|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999999888755 666665332 223333 356889999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC-HHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD-DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
|++++.++.....|+..+.+.....+.|+++|+||+|+.+... ..+..... +..+++++++||++|.|++++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHH
Confidence 9999999999988888887765556899999999999965322 22222221 22345799999999999999999
Q ss_pred HHHHHH
Q 030149 172 WLSNTL 177 (182)
Q Consensus 172 ~l~~~~ 177 (182)
++.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998764
No 50
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=100.00 E-value=4.2e-32 Score=179.83 Aligned_cols=157 Identities=42% Similarity=0.751 Sum_probs=129.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-------cccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEV-------VSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+|+++|++|+|||||++++..... ..+.+|.+.+...+.+++..+.+|||||++.+..++..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999975322 2256788888888888899999999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccc--ccCCccEEEEecccCCCChHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHK--IKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+++++++.....++..+.......+.|+++++||+|+.......+....+.... .....++++++||++|+|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999888888888888887765556899999999999976655555555544322 2234568999999999999999
Q ss_pred HHHHHH
Q 030149 170 LDWLSN 175 (182)
Q Consensus 170 ~~~l~~ 175 (182)
+++|.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999865
No 51
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=100.00 E-value=9.7e-32 Score=179.07 Aligned_cols=162 Identities=52% Similarity=0.903 Sum_probs=138.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
..+.++|+++|++|||||||++++.+..+..+.||.+.+...+...+..+.+||+||+..+...+..+++.+|++++|+|
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D 90 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVID 90 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEe
Confidence 35689999999999999999999999887778888888888888888999999999998888888888999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
+++..++.....++..+.......+.|+++++||+|+.+....+++.+.+.........++++++||++|+|+++++++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 170 (173)
T cd04155 91 SADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWV 170 (173)
T ss_pred CCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHH
Confidence 99988888888888777665555679999999999997665566676666544444455678999999999999999998
Q ss_pred HH
Q 030149 174 SN 175 (182)
Q Consensus 174 ~~ 175 (182)
.+
T Consensus 171 ~~ 172 (173)
T cd04155 171 CK 172 (173)
T ss_pred hc
Confidence 75
No 52
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=2e-32 Score=181.35 Aligned_cols=158 Identities=23% Similarity=0.333 Sum_probs=127.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+||+++|++|+|||||++++.+.++.. +.||.+... ..+...+ ..+.+|||||++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999988766 677777543 3344433 678999999999988889899999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..++..... +..+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALA-----DEYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999888877654 34678999999999997432 222222221 22346799999999999999
Q ss_pred HHHHHHHHHhh
Q 030149 169 GLDWLSNTLKS 179 (182)
Q Consensus 169 l~~~l~~~~~~ 179 (182)
+|+++.+++.+
T Consensus 156 ~~~~i~~~~~~ 166 (167)
T cd01867 156 AFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHh
Confidence 99999998864
No 53
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=2.4e-32 Score=180.66 Aligned_cols=156 Identities=22% Similarity=0.351 Sum_probs=124.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.++++.. +.||.+.... .+.. ....+.+|||||++.+..++..+++++|++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 689999999999999999999998865 6777764432 3333 3478999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
|++++++++.+..|+..+... .....|+++|+||+|+.+... .++..+.. ...+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLA-----DQLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence 999999999999888877543 335789999999999964321 22222211 2234579999999999999999
Q ss_pred HHHHHHHhh
Q 030149 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~~~~ 179 (182)
+++.+.+..
T Consensus 156 ~~l~~~~~~ 164 (165)
T cd01865 156 ERLVDIICD 164 (165)
T ss_pred HHHHHHHHh
Confidence 999987754
No 54
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=2.1e-32 Score=180.79 Aligned_cols=157 Identities=18% Similarity=0.236 Sum_probs=123.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce-eEEEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-NVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~-~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|||||||++++.+..+.. +.+|... ....+.. ....+.+|||||++++..++..+++.+|++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 489999999999999999999888765 4555542 2223333 34678899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
++++++++....|+..+.......+.|+++|+||+|+.... ..++..... +..+.+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA-----RQWGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH-----HHcCCEEEEeecCCCCCHHHHHH
Confidence 99999999999988887766555678999999999986432 222222221 12246799999999999999999
Q ss_pred HHHHHHhh
Q 030149 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~~~~ 179 (182)
+|.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T smart00173 156 DLVREIRK 163 (164)
T ss_pred HHHHHHhh
Confidence 99987753
No 55
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.2e-32 Score=186.26 Aligned_cols=160 Identities=24% Similarity=0.407 Sum_probs=128.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEE---cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+.+||+++|++|+|||||++++.++.+.. +.||.+.... .+.. ....+++|||||++.+..++..+++++|+++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 35899999999999999999999988766 5667765433 3333 2368999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++++++.+..|+..+.........|+++|+||+|+.... ..++. ..+. +..+++++++||++|+|++
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~e~Sak~g~~v~ 155 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEA-EKLA----KDLGMKYIETSARTGDNVE 155 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHH-HHHH----HHhCCEEEEEeCCCCCCHH
Confidence 999999999999999999988766544567899999999996532 22222 2222 2334789999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|+.|.+.+.+.
T Consensus 156 e~f~~l~~~~~~~ 168 (211)
T cd04111 156 EAFELLTQEIYER 168 (211)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877643
No 56
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=3.1e-32 Score=179.36 Aligned_cols=154 Identities=25% Similarity=0.363 Sum_probs=123.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++|+++|++|+|||||++++..+.+.. +.||.+.... .+...+ ..+.+||++|++.+...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 489999999999999999999988866 6788875443 444444 67899999999999989999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
|++++++|+.+..|+..+... ...+.|+++|+||.|+.+.... .+....+. +..+.+|+++||++|.|++++|.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLA----KEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999988877544 3357899999999998643221 22222222 22346799999999999999999
Q ss_pred HHHHH
Q 030149 172 WLSNT 176 (182)
Q Consensus 172 ~l~~~ 176 (182)
+|.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99865
No 57
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=2e-32 Score=180.71 Aligned_cols=157 Identities=20% Similarity=0.258 Sum_probs=123.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc-eeEEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+++|+++|.+|+|||||++++..+.+.. +.+|.+ .....+..+ ...+.+|||||++.+..++..+++++|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 3689999999999999999999888766 555554 223344443 356889999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
|+++++++.....|+..+.......+.|+++|+||+|+...... ......+. ...+++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALA----EEWGCPFMETSAKSKTMVNELFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHH----HHhCCEEEEecCCCCCCHHHHHH
Confidence 99999999999999888877655568999999999998543211 11112221 22346799999999999999999
Q ss_pred HHHHHH
Q 030149 172 WLSNTL 177 (182)
Q Consensus 172 ~l~~~~ 177 (182)
++.+.+
T Consensus 157 ~l~~~l 162 (163)
T cd04176 157 EIVRQM 162 (163)
T ss_pred HHHHhc
Confidence 998754
No 58
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-33 Score=170.72 Aligned_cols=162 Identities=21% Similarity=0.347 Sum_probs=135.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+|++|+|+..+|||||+.++++..+.+ +..|.|+....-.. +..++++|||+|++.++.+...++++++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 455799999999999999999999999988 77788866443322 4578999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+|+++.+||..+..|..++. ..++.+.|+|+|+||||+.++ +.+..+..+..+...++.||++||+.+.|++++
T Consensus 99 LmyDitNeeSf~svqdw~tqIk-tysw~naqvilvgnKCDmd~e---Rvis~e~g~~l~~~LGfefFEtSaK~NinVk~~ 174 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIK-TYSWDNAQVILVGNKCDMDSE---RVISHERGRQLADQLGFEFFETSAKENINVKQV 174 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHhe-eeeccCceEEEEecccCCccc---eeeeHHHHHHHHHHhChHHhhhcccccccHHHH
Confidence 9999999999999999998885 457889999999999999643 333333334444556677999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
|+.+...+.+.
T Consensus 175 Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 175 FERLVDIICDK 185 (193)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 59
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=4.7e-32 Score=177.68 Aligned_cols=153 Identities=13% Similarity=0.205 Sum_probs=115.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
++|+++|+.|+|||||+.++..+.+.. +.|+.+.....+.+++ ..+.+|||+|++. ..+++.+|++++|+|+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 489999999999999999999888766 4444443344555555 6789999999975 2356789999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccc-cCCccEEEEecccCCCChHHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKI-KNRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
+++++|+.+..|+..+......++.|+++|+||+|+..... +++......... ....++|++|||++|.||+++|+.+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~-~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNP-RVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCC-cccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 99999999999998887665556789999999999853211 112211111111 2234789999999999999999998
Q ss_pred HHH
Q 030149 174 SNT 176 (182)
Q Consensus 174 ~~~ 176 (182)
.+.
T Consensus 155 ~~~ 157 (158)
T cd04103 155 AQK 157 (158)
T ss_pred Hhh
Confidence 864
No 60
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.8e-32 Score=185.11 Aligned_cols=157 Identities=18% Similarity=0.194 Sum_probs=123.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee-EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
+|+++|.+|+|||||++++..+.+.. +.+|.+.. ...+...+ ..+.+|||||++.+..++..+++.+|++|+|+|+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 58999999999999999999888766 56666532 22333433 5689999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcc--cCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEE--LRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
+++++++.+..|+..+..... ..+.|+++|+||+|+..... ..+. ..+ ....+++++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEG-AAL----ARRLGCEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHH-HHH----HHHhCCEEEEecCCCCCCHHHHH
Confidence 999999999998887765432 25789999999999964322 1221 111 12234679999999999999999
Q ss_pred HHHHHHHhhc
Q 030149 171 DWLSNTLKSI 180 (182)
Q Consensus 171 ~~l~~~~~~~ 180 (182)
+++.+.+.+.
T Consensus 156 ~~l~~~l~~~ 165 (190)
T cd04144 156 YTLVRALRQQ 165 (190)
T ss_pred HHHHHHHHHh
Confidence 9999887654
No 61
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=3.1e-32 Score=179.91 Aligned_cols=156 Identities=16% Similarity=0.198 Sum_probs=123.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee-EEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+||+++|++|+|||||++++.++.+.. +.+|.+.. ......+ ...+.+|||||++++..++..+++.+|++++|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 5799999999999999999999887655 55555522 2223333 367889999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
|++++.++.....|+..+.......+.|+++++||+|+.... ..++.. .+ .+..+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQ-EL----ARKLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHH-HH----HHHcCCcEEEeeCCCCCCHHHHH
Confidence 999999999999998888766555678999999999986432 112221 11 12234579999999999999999
Q ss_pred HHHHHHH
Q 030149 171 DWLSNTL 177 (182)
Q Consensus 171 ~~l~~~~ 177 (182)
+.+...+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998765
No 62
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=5.9e-32 Score=185.75 Aligned_cols=158 Identities=22% Similarity=0.293 Sum_probs=125.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc---CeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+||+++|++|+|||||++++.++.+.. +.||.+... ..+... ...+.+|||||++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999888766 777877553 334442 47899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcc--cCCCeEEEEeecCCCCCCCC-HHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEE--LRGAVVLIFANKQDLPGALD-DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
+|++++++++.+..|+..+..... ..+.|+++|+||+|+.+... ..+....+. ...+++++++||++|+|+++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~----~~~~~~~~~iSAktg~gv~~ 156 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFA----QANGMESCLVSAKTGDRVNL 156 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHH----HHcCCEEEEEECCCCCCHHH
Confidence 999999999999888887766532 23568999999999964321 111122222 22346799999999999999
Q ss_pred HHHHHHHHHhh
Q 030149 169 GLDWLSNTLKS 179 (182)
Q Consensus 169 l~~~l~~~~~~ 179 (182)
+|+++...+..
T Consensus 157 lf~~l~~~l~~ 167 (215)
T cd04109 157 LFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 63
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=5.3e-32 Score=185.32 Aligned_cols=162 Identities=19% Similarity=0.233 Sum_probs=123.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++||+|+|++|+|||||+.++..+.+.. +.||.+.... .+.+ ....+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 3689999999999999999999988876 7888874432 3344 4577899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HH--------HHHHhccccccCCc-cEEEEecccC
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AA--------VTEALELHKIKNRQ-WAIFKTSAIK 162 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~--------~~~~~~~~~~~~~~-~~~~~~S~~~ 162 (182)
|++++++|+.+..+|....... .++.|+++|+||+|+.+.... .. +........++..+ .+|+||||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 9999999999976555444332 357999999999999643110 00 11112222233344 4899999999
Q ss_pred CCC-hHHHHHHHHHHHhh
Q 030149 163 GEG-LFEGLDWLSNTLKS 179 (182)
Q Consensus 163 ~~g-i~~l~~~l~~~~~~ 179 (182)
+++ |+++|+.+..+...
T Consensus 160 ~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 160 SERSVRDVFHVATVASLG 177 (222)
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 985 99999999886544
No 64
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=2.9e-32 Score=181.50 Aligned_cols=158 Identities=18% Similarity=0.239 Sum_probs=118.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.++|+++|++|+|||||+.++..+.+.. +.||.+... ..+.. ....+.+|||+|++.+..++..+++++|++|+|+
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 3689999999999999999999888765 677765322 23333 3467899999999999999999999999999999
Q ss_pred eCCCcchHHHHHH-HHHHHHhhcccCCCeEEEEeecCCCCCCCC-HHHHHH--------HhccccccCCc-cEEEEeccc
Q 030149 93 DSSDTERLVIAKD-EFHAILEEEELRGAVVLIFANKQDLPGALD-DAAVTE--------ALELHKIKNRQ-WAIFKTSAI 161 (182)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~~~~~--------~~~~~~~~~~~-~~~~~~S~~ 161 (182)
|++++++|+.+.. |+..+... .++.|+++|+||+|+.+... .+.... .......+..+ .++++|||+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999975 55555433 25799999999999964211 111111 00111112223 479999999
Q ss_pred CCCChHHHHHHHHHH
Q 030149 162 KGEGLFEGLDWLSNT 176 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~ 176 (182)
+|+|++++|+.+...
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999998864
No 65
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=8.4e-32 Score=178.27 Aligned_cols=157 Identities=24% Similarity=0.350 Sum_probs=124.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+||+++|++|+|||||++++.++.+.. +.+|.+... ..+... ...+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 4799999999999999999999888765 566666433 334443 35789999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+++++++..+..|+..+.... ..+.|+++++||+|+..... .++.. .+. ...+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQ-EFA----DELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHH-HHH----HHcCCeEEEEECCCCcCHHHH
Confidence 99999999999999888775542 35789999999999864322 12222 221 233568999999999999999
Q ss_pred HHHHHHHHhh
Q 030149 170 LDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~~~~ 179 (182)
|+.+.+.+.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 66
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=5.5e-32 Score=182.53 Aligned_cols=160 Identities=21% Similarity=0.228 Sum_probs=122.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
.||+++|++|+|||||++++..+.+.. +.||.+.... .+.. ....+.+|||+|++.+..++..+++.+|++|+|+|
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 489999999999999999999988866 6777764432 2333 34789999999999999999999999999999999
Q ss_pred CCCcchHHHHHH-HHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHH---------HHhcccccc-CCccEEEEecccC
Q 030149 94 SSDTERLVIAKD-EFHAILEEEELRGAVVLIFANKQDLPGALDDAAVT---------EALELHKIK-NRQWAIFKTSAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~S~~~ 162 (182)
++++++|+.+.. |+..+... .++.|+++|+||+|+.......+.. ......... ...++|+++||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999998864 66665443 2478999999999997543222111 011111111 2236799999999
Q ss_pred CCChHHHHHHHHHHHhh
Q 030149 163 GEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~~ 179 (182)
|+|++++|+++.+.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988764
No 67
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=9.5e-32 Score=182.71 Aligned_cols=159 Identities=24% Similarity=0.367 Sum_probs=127.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...++|+++|++|+|||||++++.+..+.. +.||.+... ..+... ...+.+||+||++.+..++..+++.+|+++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 357899999999999999999999988765 677777443 334433 357899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|+++++++..+..|+..+.... ...|+++|+||+|+..... .++..... ...+++++++||++|.|++
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~gi~ 156 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFA-----GQMGISLFETSAKENINVE 156 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEECCCCcCHH
Confidence 9999999999999998888775432 4689999999999965322 22222211 1234679999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|++|.+.+...
T Consensus 157 ~lf~~l~~~~~~~ 169 (199)
T cd04110 157 EMFNCITELVLRA 169 (199)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
No 68
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=8.5e-32 Score=178.04 Aligned_cols=154 Identities=21% Similarity=0.243 Sum_probs=119.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE-EEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
++|+++|++|+|||||++++.++.+.. +.||.+..... +.. ....+.+|||||++.+..++..+++.+|++++|+|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988755 66666533322 222 45788999999999999888888999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcc--cCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEE--LRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
++++++++.+..|+..+..... .++.|+++|+||+|+.+... .++. . ......+++++++||++|.|++++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~----~~~~~~~~~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEG-A----ACATEWNCAFMETSAKTNHNVQEL 156 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHH-H----HHHHHhCCcEEEeecCCCCCHHHH
Confidence 9999999999888876654322 25789999999999965221 1111 1 112233467999999999999999
Q ss_pred HHHHHHH
Q 030149 170 LDWLSNT 176 (182)
Q Consensus 170 ~~~l~~~ 176 (182)
|++|...
T Consensus 157 f~~l~~~ 163 (165)
T cd04140 157 FQELLNL 163 (165)
T ss_pred HHHHHhc
Confidence 9998753
No 69
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.3e-32 Score=170.89 Aligned_cols=162 Identities=21% Similarity=0.316 Sum_probs=138.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccc-ccceeEEE--EE--EcCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIP-TIGFNVET--VQ--YNNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~-t~~~~~~~--~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+||+++|++|+|||||+-+|..+.+.+..| |+|+.... +. ....++-+|||+|+++|+.+.+.|++.+.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 456999999999999999999999999999776 47754433 33 36688999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+|++.+++|..+..|+.++-.+..+++...++|+||+|... .+.+..+....+++..++-|+++||++.+|++..
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes---~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES---ERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh---cccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 9999999999999999999988787778888899999999642 2444455555666677778999999999999999
Q ss_pred HHHHHHHHhh
Q 030149 170 LDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~~~~ 179 (182)
|+.+...+.+
T Consensus 166 FeelveKIi~ 175 (209)
T KOG0080|consen 166 FEELVEKIIE 175 (209)
T ss_pred HHHHHHHHhc
Confidence 9999988754
No 70
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=100.00 E-value=6e-31 Score=172.63 Aligned_cols=156 Identities=40% Similarity=0.709 Sum_probs=131.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc
Q 030149 20 ILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE 98 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
|+++|++|+|||||++++.+..+.. +.||.+.....+..+...+.+||+||++.+...+..+++.+|++++|+|+++++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 7999999999999999999988766 778888877777778899999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHH
Q 030149 99 RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
++.....++..........+.|+++|+||+|+......++..+...........++++++|+++|.|++++++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 88888888888766544567899999999998766555555555543333445678999999999999999999865
No 71
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=3.2e-31 Score=174.62 Aligned_cols=155 Identities=18% Similarity=0.286 Sum_probs=121.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++..+.+.+ +.++.+.... .... ....+.+|||||++.+..++..+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999888765 4455543322 2233 3567899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
|++++.++.....|+..+.... .+.|+++|+||+|+.... ..+. ..+ ....+++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl~~~~-~~~~-~~~----~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDLDPSV-TQKK-FNF----AEKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccCchhH-HHHH-HHH----HHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999888888775432 468999999999985321 1111 111 1223567999999999999999999
Q ss_pred HHHHHhhc
Q 030149 173 LSNTLKSI 180 (182)
Q Consensus 173 l~~~~~~~ 180 (182)
+.+.+.+.
T Consensus 153 l~~~~~~~ 160 (161)
T cd04124 153 AIKLAVSY 160 (161)
T ss_pred HHHHHHhc
Confidence 99887764
No 72
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=4.4e-31 Score=175.45 Aligned_cols=158 Identities=15% Similarity=0.307 Sum_probs=124.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...++|+++|++|+|||||++++..+.+.. +.++.+... ..+.. ....+.+||+||++.+..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 466999999999999999999999888766 566776543 23334 3467899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcc---cCCCeEEEEeecCCCCCC-CCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEE---LRGAVVLIFANKQDLPGA-LDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
+|+|++++++++.+..|...+..... ..+.|+++|+||+|+... ...++..+... .....+++++||++|.|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR----ENGDYPYFETSAKDATN 158 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH----HCCCCeEEEEECCCCCC
Confidence 99999999999999888887765432 246899999999998632 22333332222 12234799999999999
Q ss_pred hHHHHHHHHHH
Q 030149 166 LFEGLDWLSNT 176 (182)
Q Consensus 166 i~~l~~~l~~~ 176 (182)
+.++|+.+.+.
T Consensus 159 v~~~~~~~~~~ 169 (170)
T cd04116 159 VAAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999999865
No 73
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.98 E-value=2.3e-31 Score=175.97 Aligned_cols=156 Identities=21% Similarity=0.342 Sum_probs=124.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..++|+++|++|||||||++++.++.+.. +.||.+... ..+..++ ..+.+||+||++.+..++..+++.++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 45799999999999999999999888764 667776443 3344444 578999999999989999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.... ..++..... ...+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 155 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFA-----EKNGLSFIETSALDGTNVEE 155 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHH
Confidence 999999999999998888775543 3468999999999986432 222222222 12356799999999999999
Q ss_pred HHHHHHHHH
Q 030149 169 GLDWLSNTL 177 (182)
Q Consensus 169 l~~~l~~~~ 177 (182)
+++.+.+.+
T Consensus 156 l~~~l~~~i 164 (165)
T cd01868 156 AFKQLLTEI 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998765
No 74
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.98 E-value=1.7e-31 Score=177.40 Aligned_cols=158 Identities=25% Similarity=0.393 Sum_probs=124.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCc-chhhhccCCCCeEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIR-PYWRCYFPNTQAIIY 90 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~-~~~~~~~~~~d~ii~ 90 (182)
.++|+++|++|+|||||++++..+.+.. +.+|.+... ..+... ...+.+||+||++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5799999999999999999999888765 666666433 334443 4789999999998876 467888999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC-HHHHHHHhccccccCCccEEEEecccC---CCCh
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD-DAAVTEALELHKIKNRQWAIFKTSAIK---GEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~gi 166 (182)
|+|+++++++..+..|+..+.......+.|+++|+||+|+..... ..+....+. +...++|+++||++ +.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence 999999999999999888887665556899999999999864322 122222222 22347799999999 8899
Q ss_pred HHHHHHHHHHHh
Q 030149 167 FEGLDWLSNTLK 178 (182)
Q Consensus 167 ~~l~~~l~~~~~ 178 (182)
+++|..+.+.+.
T Consensus 158 ~~~f~~l~~~~~ 169 (170)
T cd04115 158 EAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHhh
Confidence 999999988763
No 75
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=3.4e-31 Score=175.18 Aligned_cols=157 Identities=24% Similarity=0.340 Sum_probs=123.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce--eEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+.+||+++|++|+|||||++++..+.+.. +.+|.+. ....+.+.+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999887765 5556553 344455554 588999999999988888999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ..++...... ......++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAE----KNGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH----HcCCcEEEEEECCCCCCHHH
Confidence 99999999999998888887553 33578999999999996432 1122222111 12224699999999999999
Q ss_pred HHHHHHHHH
Q 030149 169 GLDWLSNTL 177 (182)
Q Consensus 169 l~~~l~~~~ 177 (182)
+++.+.+.+
T Consensus 157 ~~~~l~~~l 165 (165)
T cd01864 157 AFLLMATEL 165 (165)
T ss_pred HHHHHHHhC
Confidence 999998753
No 76
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=3.8e-31 Score=178.41 Aligned_cols=158 Identities=25% Similarity=0.334 Sum_probs=125.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.++.+.. +.+|.+... ..+..+ ...+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999998876 777777443 334443 467899999999999989999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
|+++++++..+..|+..+.... ..+.|+++++||+|+.+.... .+....+. ...+++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFC----DSLNIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999888776543 346899999999998743211 12222222 22355799999999999999999
Q ss_pred HHHHHHhhc
Q 030149 172 WLSNTLKSI 180 (182)
Q Consensus 172 ~l~~~~~~~ 180 (182)
+|.+.+.+.
T Consensus 156 ~l~~~~~~~ 164 (188)
T cd04125 156 LLVKLIIKR 164 (188)
T ss_pred HHHHHHHHH
Confidence 999988654
No 77
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.98 E-value=1.2e-30 Score=171.89 Aligned_cols=155 Identities=20% Similarity=0.352 Sum_probs=124.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.+..+.. ..|+.+... ..+.+. ...+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999888765 666666443 333343 467999999999999888888999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC-CHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL-DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
|+++++++.....|+..+.......+.|+++++||+|+.... ..++... +. ...+++++++|+++|+|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLK-FA----RKHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHH-HH----HHcCCEEEEEecCCCCCHHHHHH
Confidence 999999999988888877766666789999999999997332 3333222 22 22357799999999999999999
Q ss_pred HHHHHH
Q 030149 172 WLSNTL 177 (182)
Q Consensus 172 ~l~~~~ 177 (182)
.+.+.+
T Consensus 156 ~~~~~~ 161 (161)
T cd01863 156 ELVEKI 161 (161)
T ss_pred HHHHhC
Confidence 988753
No 78
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.98 E-value=4.2e-31 Score=175.20 Aligned_cols=158 Identities=19% Similarity=0.264 Sum_probs=125.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+||+++|++|+|||||++++.+..+.. +.+|.+... ..+..+ ...+.+||+||++.+..++..+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 34799999999999999999999888766 455655433 333333 4689999999999998888999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|++++.++..+..|+..+.... .++.|+++|+||.|+.... ..++..... ...+++++++||++++|+++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~ 156 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFA-----KEHGLIFMETSAKTASNVEE 156 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999888776543 3679999999999996432 223322222 22356799999999999999
Q ss_pred HHHHHHHHHhh
Q 030149 169 GLDWLSNTLKS 179 (182)
Q Consensus 169 l~~~l~~~~~~ 179 (182)
+|.++.+.+.+
T Consensus 157 ~~~~~~~~~~~ 167 (168)
T cd01866 157 AFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 79
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.98 E-value=2.8e-31 Score=174.90 Aligned_cols=154 Identities=20% Similarity=0.335 Sum_probs=121.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.++++.. +.++.+... ..+..+ ...+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 589999999999999999999888755 555655333 333333 367899999999999888999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
|+++++++..+..|+..+... ..++.|+++++||+|+.+.. ..++...... ..+++++++||+++.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQ-----ENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHH
Confidence 999999999998888776433 34689999999999996432 2222222221 233779999999999999999
Q ss_pred HHHHHHH
Q 030149 171 DWLSNTL 177 (182)
Q Consensus 171 ~~l~~~~ 177 (182)
+++.+.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
No 80
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.98 E-value=2.3e-30 Score=180.33 Aligned_cols=156 Identities=24% Similarity=0.255 Sum_probs=124.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc-eeEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
++|+++|++|+|||||++++..+.+.. +.||.+ .....+.+.+ ..+.+|||+|++.+..++..++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 489999999999999999999888865 677775 3333444444 678899999999988888888999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhc--------ccCCCeEEEEeecCCCCC--CCCHHHHHHHhccccccCCccEEEEecccCC
Q 030149 94 SSDTERLVIAKDEFHAILEEE--------ELRGAVVLIFANKQDLPG--ALDDAAVTEALELHKIKNRQWAIFKTSAIKG 163 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--------~~~~~~iivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (182)
++++++|+.+..|+..+.... ...+.|+++|+||+|+.. ....+++.+... ....++++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~----~~~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVG----GDENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHH----hcCCCEEEEEeCCCC
Confidence 999999999998888886542 235789999999999964 233344443332 123567999999999
Q ss_pred CChHHHHHHHHHHH
Q 030149 164 EGLFEGLDWLSNTL 177 (182)
Q Consensus 164 ~gi~~l~~~l~~~~ 177 (182)
.|++++|+.|.+.+
T Consensus 157 ~gI~elf~~L~~~~ 170 (247)
T cd04143 157 SNLDEMFRALFSLA 170 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998865
No 81
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=6.5e-32 Score=167.10 Aligned_cols=159 Identities=24% Similarity=0.313 Sum_probs=132.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
-++|+++|..|+|||+|++++..+-|++ ...|+|+.. .++.. .+.++++|||+|+++|+.+...|++.++++|++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 4799999999999999999999998887 777888543 34444 678999999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
+|++...+|+.+..|+..+-.+. ..++.-|+|+||+|+.+. .++++.....+.+....-|+++||++..|++.||.
T Consensus 87 ydiscqpsfdclpewlreie~ya-n~kvlkilvgnk~d~~dr---revp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYA-NNKVLKILVGNKIDLADR---REVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHh-hcceEEEeeccccchhhh---hhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 99999999999999999986654 356778999999998643 44444444444445555699999999999999999
Q ss_pred HHHHHHhh
Q 030149 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~~~~ 179 (182)
.+...+..
T Consensus 163 ~~a~rli~ 170 (213)
T KOG0095|consen 163 DLACRLIS 170 (213)
T ss_pred HHHHHHHH
Confidence 98877653
No 82
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.4e-31 Score=174.73 Aligned_cols=162 Identities=20% Similarity=0.290 Sum_probs=137.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+-+||+++|++++|||-|+.++..+.|.. .-+|+|+...+... ...+.+||||+|+++++.....|++.+.+.+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 567899999999999999999999999987 66788876665433 5578899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+|++...+|+.+..|+.++..+ ...++++++|+||+||.. .+.+..+..+..++..++.++++||+.+.|++++
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~---lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNH---LRAVPTEDGKAFAEKEGLFFLETSALDATNVEKA 167 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhh---ccccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence 999999999999999999998665 446899999999999963 2333334444445667788999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
|+.++..+.+.
T Consensus 168 F~~~l~~I~~~ 178 (222)
T KOG0087|consen 168 FERVLTEIYKI 178 (222)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 83
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.98 E-value=1.3e-30 Score=176.53 Aligned_cols=160 Identities=20% Similarity=0.155 Sum_probs=119.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEcC--eEEEEEEcCCCCCCcc--------hhhhccCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRP--------YWRCYFPN 84 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~--------~~~~~~~~ 84 (182)
++|+|+|.+|+|||||++++.++.+.. +.||.+... ..+.+++ ..+.+|||||...+.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999988766 677765332 3344444 6788999999754321 12345789
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhc--ccCCCeEEEEeecCCCCCCCC-HHHHHHHhccccccCCccEEEEeccc
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEE--ELRGAVVLIFANKQDLPGALD-DAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~iivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
+|++|+|+|++++++++....|+..+.... ...+.|+++|+||+|+..... ..+....+. .+..+++|+++||+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~e~Sak 157 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLV---RKSWKCGYLECSAK 157 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHH---HHhcCCcEEEecCC
Confidence 999999999999999999988888877654 246799999999999964311 111111111 12235779999999
Q ss_pred CCCChHHHHHHHHHHHhhc
Q 030149 162 KGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~~~~ 180 (182)
+|.|++++|+.+.+.+...
T Consensus 158 ~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 158 YNWHILLLFKELLISATTR 176 (198)
T ss_pred CCCCHHHHHHHHHHHhhcc
Confidence 9999999999999877654
No 84
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=4.8e-31 Score=178.25 Aligned_cols=157 Identities=24% Similarity=0.407 Sum_probs=124.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCc--ccccccceeEE--EEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVV--STIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~--~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+||+++|++|||||||++++..+.+. .+.+|.+.... .+.++ ...+.+|||||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999988875 35666664433 23443 46889999999999988888899999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|++++++++.+..|+..+... ...+.|+++|+||+|+..+. ..++.. .+. ...+.+|+++||++|.|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~-~l~----~~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGE-RLA----KEYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHH-HHH----HHcCCeEEEEeCCCCCCHHHH
Confidence 9999999999998888777654 33478999999999996321 222222 221 223467999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
|++|.+.+...
T Consensus 155 ~~~l~~~~~~~ 165 (191)
T cd04112 155 FTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999888764
No 85
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=4.8e-31 Score=181.17 Aligned_cols=161 Identities=21% Similarity=0.320 Sum_probs=129.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+||+++|++|+|||||++++.+..+.. +.+|.+... ..+..+ ...+.+||++|++.+..++..+++.++++|
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 456899999999999999999999888764 667777554 344443 368999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
+|+|++++++++.+..|+..+... ...+.|+++|+||+|+...... .+....+. ...+++++++||++|.|+++
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVEK 164 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHH
Confidence 999999999999998888877544 3357999999999998643221 22223332 23467899999999999999
Q ss_pred HHHHHHHHHhhc
Q 030149 169 GLDWLSNTLKSI 180 (182)
Q Consensus 169 l~~~l~~~~~~~ 180 (182)
+|+.+...+.+.
T Consensus 165 lf~~l~~~i~~~ 176 (216)
T PLN03110 165 AFQTILLEIYHI 176 (216)
T ss_pred HHHHHHHHHHHH
Confidence 999999888653
No 86
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=6.7e-31 Score=177.12 Aligned_cols=156 Identities=21% Similarity=0.253 Sum_probs=120.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEEc---CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++|+++|++|+|||||++++.++.+.. +.||.+.... .+... ...+.+|||||++.+..++..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 589999999999999999999988765 6666654432 23332 467899999999999999999999999999999
Q ss_pred eCCCcchHHHHHH-HHHHHHhhcccCCCeEEEEeecCCCCCCC------CHHHHHHHhccccccCCcc-EEEEecccCCC
Q 030149 93 DSSDTERLVIAKD-EFHAILEEEELRGAVVLIFANKQDLPGAL------DDAAVTEALELHKIKNRQW-AIFKTSAIKGE 164 (182)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 164 (182)
|++++++|+.+.. |+..+... .++.|+++|+||+|+.... ...+.. .+ ....+. +++++||++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~-~~----~~~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAE-SV----AKKQGAFAYLECSAKTME 153 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHH-HH----HHHcCCcEEEEccCCCCC
Confidence 9999999999875 55554332 2578999999999986432 112111 11 122233 79999999999
Q ss_pred ChHHHHHHHHHHHhhc
Q 030149 165 GLFEGLDWLSNTLKSI 180 (182)
Q Consensus 165 gi~~l~~~l~~~~~~~ 180 (182)
|++++|+.+.+.+...
T Consensus 154 ~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 154 NVEEVFDTAIEEALKK 169 (187)
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999888654
No 87
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.97 E-value=1e-30 Score=177.09 Aligned_cols=161 Identities=19% Similarity=0.217 Sum_probs=123.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc--cccccceeE--EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+||+++|++|+|||||++++..+.+.. +.+|.+... ..+..++ ..+.+||++|++.+..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988764 777777543 2344443 5677999999999988898899999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC-HHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD-DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
+|++++.+++....|+..+... ..+.|+++|+||+|+.+... ...+............+.+++++||++|+|+++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 158 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF 158 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999988888776543 24789999999999864321 11111000011112234679999999999999999
Q ss_pred HHHHHHHhhc
Q 030149 171 DWLSNTLKSI 180 (182)
Q Consensus 171 ~~l~~~~~~~ 180 (182)
+.+.+.+.+.
T Consensus 159 ~~i~~~~~~~ 168 (193)
T cd04118 159 QKVAEDFVSR 168 (193)
T ss_pred HHHHHHHHHh
Confidence 9999887543
No 88
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=2.4e-31 Score=175.37 Aligned_cols=154 Identities=28% Similarity=0.424 Sum_probs=126.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE--EEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
||+++|++|+|||||++++.++.+.. +.+|.+..... +.. ....+.+||++|++.+..+....++++|++|+|+|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999988776 77787655444 333 44679999999999998888899999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC--CCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG--ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
.+++++++.+..|+..+..... .+.|+++++||.|+.+ ....++..+.. ...+.+|+++|++++.|+.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFA-----KELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHH-----HHTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHH-----HHhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999988888766544 5689999999999875 22333322222 22347899999999999999999
Q ss_pred HHHHHHh
Q 030149 172 WLSNTLK 178 (182)
Q Consensus 172 ~l~~~~~ 178 (182)
.+.+.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998875
No 89
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=1.1e-30 Score=179.13 Aligned_cols=161 Identities=24% Similarity=0.362 Sum_probs=126.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
...++|+++|++|+|||||++++....+..+.++.+... ..+..+ ...+.+|||||++.+..++..+++.+|++|+
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 567999999999999999999999888877777777544 334443 4678999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhh-cccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEE-EELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
|+|+++++++..+..+|...... ....+.|+++|+||+|+..... .++... +. ...+++|+++||++|.|++
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~-~~----~~~~~~~~e~SAk~~~~v~ 166 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMA-LA----KEHGCLFLECSAKTRENVE 166 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH-HH----HHcCCEEEEEeCCCCCCHH
Confidence 99999999999998766554443 2334679999999999964322 122211 11 2235679999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|++|.+.+.+.
T Consensus 167 ~l~~~l~~~~~~~ 179 (211)
T PLN03118 167 QCFEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888653
No 90
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.97 E-value=1.7e-30 Score=175.74 Aligned_cols=150 Identities=21% Similarity=0.316 Sum_probs=122.6
Q ss_pred EcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc
Q 030149 23 LGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT 97 (182)
Q Consensus 23 ~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
+|++|||||||++++..+.+.. +.||.+.......+ ....+.+|||+|++.+..++..+++++|++|+|+|++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 6999999999999999888865 78888866554433 457899999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 98 ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
.++..+..|+..+.... .+.|+++|+||+|+.......+... .....++.|++|||++|+||+++|++|...+
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~~-----~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSIT-----FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHHH-----HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999998888886543 4799999999999853221111111 1233567899999999999999999999887
Q ss_pred hh
Q 030149 178 KS 179 (182)
Q Consensus 178 ~~ 179 (182)
.+
T Consensus 154 ~~ 155 (200)
T smart00176 154 IG 155 (200)
T ss_pred Hh
Confidence 55
No 91
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.97 E-value=3.9e-31 Score=174.37 Aligned_cols=152 Identities=21% Similarity=0.348 Sum_probs=120.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+||+++|++|+|||||++++.++.+.. +.+|.+.... .+.+ ....+.+|||||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999888765 6677765442 2333 35789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|++++++++.+..|+..+.... .+.|+++|+||+|+..... .++..... +..+++++++|+++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALA-----KRLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHHH
Confidence 999999999999988887765432 4789999999999864322 22222222 22345799999999999999
Q ss_pred HHHHHHHH
Q 030149 169 GLDWLSNT 176 (182)
Q Consensus 169 l~~~l~~~ 176 (182)
++++|...
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99998764
No 92
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=9e-31 Score=172.45 Aligned_cols=155 Identities=21% Similarity=0.363 Sum_probs=121.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.||+++|++|||||||++++.+.++.. +.++.+.. ...+..++ ..+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 489999999999999999999888765 55655543 33444443 57899999999999989999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC-HHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD-DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
|+++++++.....|+..+..... .+.|+++++||+|+.+... ..+...... +..+++++++||+++.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKA----KELNAMFIETSAKAGHNVKELFR 155 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHH----HHhCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999988888765432 3699999999999953321 112222221 22347799999999999999999
Q ss_pred HHHHHH
Q 030149 172 WLSNTL 177 (182)
Q Consensus 172 ~l~~~~ 177 (182)
++.+.+
T Consensus 156 ~i~~~l 161 (161)
T cd01861 156 KIASAL 161 (161)
T ss_pred HHHHhC
Confidence 998753
No 93
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=6.1e-30 Score=168.83 Aligned_cols=155 Identities=25% Similarity=0.399 Sum_probs=124.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+||+++|++|+|||||++++.++.+.. +.+|.+.. ...+.+ ....+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999998876 67777643 334444 447889999999998888888899999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+++++++.....|+..+..... +..|+++++||+|+.... ..++...... ..+++++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-----ENGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 999999999999988888766543 679999999999986321 2233222221 22367999999999999999
Q ss_pred HHHHHHHH
Q 030149 170 LDWLSNTL 177 (182)
Q Consensus 170 ~~~l~~~~ 177 (182)
+++|.+.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99999876
No 94
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=1.1e-30 Score=174.25 Aligned_cols=159 Identities=19% Similarity=0.197 Sum_probs=117.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee-EEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||++++..+.+.. +.||.... ...+..+ ...+.+|||||++.+...+..+++.+|++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 589999999999999999999888765 56665422 2234444 3567899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHH---------HHHHhccccccCCc-cEEEEecccCC
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA---------VTEALELHKIKNRQ-WAIFKTSAIKG 163 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~S~~~~ 163 (182)
..++++|+.....|...+... ..+.|+++++||+|+.+...... +.........+..+ .++++|||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999998875444444333 46899999999999864321111 00011111112223 36999999999
Q ss_pred CChHHHHHHHHHHH
Q 030149 164 EGLFEGLDWLSNTL 177 (182)
Q Consensus 164 ~gi~~l~~~l~~~~ 177 (182)
.|++++|+.+.+.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998765
No 95
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=1.3e-30 Score=172.21 Aligned_cols=156 Identities=22% Similarity=0.410 Sum_probs=124.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|||||||++++.+..+.. +.++.+.. ...+...+ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 589999999999999999999888755 55665543 33344444 68899999999998889999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
|++++.+++.+..|+..+..... .+.|+++++||+|+.... ..+.... +. +..+++++++|+++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEA-FA----EEHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999998887777655432 589999999999986532 2222322 22 2234679999999999999999
Q ss_pred HHHHHHHhh
Q 030149 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~~~~ 179 (182)
+.+.+.+.+
T Consensus 155 ~~i~~~~~~ 163 (164)
T smart00175 155 EELAREILK 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998764
No 96
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.97 E-value=1.1e-30 Score=172.53 Aligned_cols=154 Identities=21% Similarity=0.292 Sum_probs=119.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC--CCcc-cccccceeEE--EEEE---cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG--EVVS-TIPTIGFNVE--TVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~--~~~~-~~~t~~~~~~--~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+||+++|++|||||||++++..+ .+.. +.+|.+.... .+.. ....+.+|||||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 3443 6777765433 2333 3478999999999988888899999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHH-HHHHhccccccCCccEEEEecccCCCChHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA-VTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
+|+|+++++++.....|+..+.... .+.|+++|+||+|+........ ..+.+. ...+.+++++||++|.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999998888887765542 4689999999999964422111 111221 22346799999999999999
Q ss_pred HHHHHHHHH
Q 030149 169 GLDWLSNTL 177 (182)
Q Consensus 169 l~~~l~~~~ 177 (182)
+++.+.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998875
No 97
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=1.4e-30 Score=173.71 Aligned_cols=157 Identities=18% Similarity=0.231 Sum_probs=117.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCC
Q 030149 20 ILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSS 95 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
|+|+|++|+|||||++++..+.+.. +.++...... .+..+ ...+.+|||||++.+..++..+++.+|++|+|+|++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 5899999999999999999988765 5565543322 23333 357899999999999999999999999999999999
Q ss_pred CcchHHHHHH-HHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HH--------HHHHhccccccCCc-cEEEEecccCCC
Q 030149 96 DTERLVIAKD-EFHAILEEEELRGAVVLIFANKQDLPGALDD-AA--------VTEALELHKIKNRQ-WAIFKTSAIKGE 164 (182)
Q Consensus 96 ~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~--------~~~~~~~~~~~~~~-~~~~~~S~~~~~ 164 (182)
++++|+.+.. |+..+... .++.|+++|+||+|+...... +. +.........+..+ .+++++||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999874 66655443 257999999999999653211 00 00011111122233 379999999999
Q ss_pred ChHHHHHHHHHHHh
Q 030149 165 GLFEGLDWLSNTLK 178 (182)
Q Consensus 165 gi~~l~~~l~~~~~ 178 (182)
|++++|+.+.+.+.
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998764
No 98
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=5.5e-30 Score=169.10 Aligned_cols=157 Identities=18% Similarity=0.273 Sum_probs=124.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||++++....+.. +.++.+... ..... ....+.+||+||++.+...+..+++.+|++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 589999999999999999999887765 455544222 22223 45789999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
++++.++.....|+..+.......+.|+++|+||+|+... ....+... .. ...+.+++++||++|+|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAAN-LA----RQWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHH-HH----HHhCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999999998887655568999999999999752 12222222 21 12346799999999999999999
Q ss_pred HHHHHHhh
Q 030149 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~~~~ 179 (182)
.+.+++.+
T Consensus 156 ~l~~~~~~ 163 (164)
T cd04139 156 DLVREIRQ 163 (164)
T ss_pred HHHHHHHh
Confidence 99988754
No 99
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=9.5e-31 Score=176.61 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=113.3
Q ss_pred ccEEEEEcCCCCCHHHHHH-HHhcCCC-----c-ccccccce-eEE------------EEEEcCeEEEEEEcCCCCCCcc
Q 030149 17 EARILVLGLDNAGKTTILY-RLQMGEV-----V-STIPTIGF-NVE------------TVQYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~-~~~~~~~-----~-~~~~t~~~-~~~------------~~~~~~~~~~~~D~~g~~~~~~ 76 (182)
.+||+++|+.|+|||||+. ++.++.+ . .+.||++. ... .++.....+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 5654433 2 25677742 111 1222457899999999875 3
Q ss_pred hhhhccCCCCeEEEEEeCCCcchHHHHHH-HHHHHHhhcccCCCeEEEEeecCCCCCCCC----------------HHHH
Q 030149 77 YWRCYFPNTQAIIYVVDSSDTERLVIAKD-EFHAILEEEELRGAVVLIFANKQDLPGALD----------------DAAV 139 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~----------------~~~~ 139 (182)
....+++++|++|+|+|++++++|+.+.. |+..+.... ++.|+++|+||+|+..... ...+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 45668999999999999999999999974 666654332 4789999999999864210 1122
Q ss_pred HHHhccccccCCccEEEEecccCCCChHHHHHHHHHH
Q 030149 140 TEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNT 176 (182)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~ 176 (182)
........++..+++|++|||++|+||+++|+.+.++
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 2222333344556789999999999999999998864
No 100
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.97 E-value=9.4e-31 Score=161.30 Aligned_cols=173 Identities=36% Similarity=0.675 Sum_probs=159.6
Q ss_pred HHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCC
Q 030149 7 RLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (182)
++-++.+ ...+.+.++|-.+||||||+|.+..+.+.. ..||.|.+...+.-+...+.+||.||+..++.+|..|.+.+
T Consensus 11 wi~~~f~-k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v 89 (186)
T KOG0075|consen 11 WICNSFW-KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGV 89 (186)
T ss_pred HHHHHHH-HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcC
Confidence 3433344 788999999999999999999999888887 78999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
++++||+|+.+++.++..+..+..++......+.|.++.+||.|+++.-+...+...+.........+.+|.+||++..|
T Consensus 90 ~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~N 169 (186)
T KOG0075|consen 90 SAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVN 169 (186)
T ss_pred cEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCcc
Confidence 99999999999999999999999999999989999999999999999988999999999888888889999999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 030149 166 LFEGLDWLSNTLKSI 180 (182)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (182)
++.+.+||.++-...
T Consensus 170 id~~~~Wli~hsk~~ 184 (186)
T KOG0075|consen 170 IDITLDWLIEHSKSL 184 (186)
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999999876544
No 101
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=1.3e-29 Score=168.66 Aligned_cols=159 Identities=16% Similarity=0.274 Sum_probs=122.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|||||||++++.+..+.. +.+|.+... ..+... ...+.+||+||++.+..++..+++++|++|+|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999999999887655 455655433 334443 356789999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcc---cCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEE---LRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
|++++++++....|...+..... ..+.|+++|+||+|+..+ ...++...... .....+++++|+++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ----SNGNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH----HcCCceEEEEECCCCCCHH
Confidence 99999998888777776655433 237899999999999732 22333322222 1223679999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++++.+.+.+.+.
T Consensus 157 ~l~~~i~~~~~~~ 169 (172)
T cd01862 157 QAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877654
No 102
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=1.8e-30 Score=172.15 Aligned_cols=157 Identities=18% Similarity=0.213 Sum_probs=123.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee-EEEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
++|+++|.+|+|||||++++.++.+.. +.+|.+.. ...+.. ....+.+|||||++.+..++..+++.++++++|+|
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~ 81 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS 81 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence 689999999999999999999888765 56666533 223333 34688999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
.+++++++....|...+.......+.|+++++||.|+.+... .++.. .+.. .....+++++||++|.|++++|+
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~-~~~~---~~~~~~~~~~SA~~~~~i~~~f~ 157 (168)
T cd04177 82 VTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGV-SLSQ---QWGNVPFYETSARKRTNVDEVFI 157 (168)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHH-HHHH---HcCCceEEEeeCCCCCCHHHHHH
Confidence 999999999988888776655556899999999999864322 12211 1111 11236799999999999999999
Q ss_pred HHHHHHh
Q 030149 172 WLSNTLK 178 (182)
Q Consensus 172 ~l~~~~~ 178 (182)
++...+.
T Consensus 158 ~i~~~~~ 164 (168)
T cd04177 158 DLVRQII 164 (168)
T ss_pred HHHHHHh
Confidence 9987653
No 103
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=5.1e-30 Score=169.69 Aligned_cols=161 Identities=14% Similarity=0.171 Sum_probs=116.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCccccccc-ceeEEEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTI-GFNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~-~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
+||+++|++|+|||||++++..+.+....++. ........+ ....+.+|||||.+.....+..++..+|++++|+|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 48999999999999999999998886543332 211222222 567899999999988877778888999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCc-cEEEEecccCCCChHHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQ-WAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~gi~~l~~~l 173 (182)
+++++++.+..+|...+.... .+.|+++|+||+|+.+.................... .+++++||++|.|++++|+.+
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~ 159 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYA 159 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHH
Confidence 999999988655544444333 479999999999997543321111111000001111 269999999999999999999
Q ss_pred HHHHhh
Q 030149 174 SNTLKS 179 (182)
Q Consensus 174 ~~~~~~ 179 (182)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T cd01893 160 QKAVLH 165 (166)
T ss_pred HHHhcC
Confidence 887654
No 104
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2e-30 Score=161.05 Aligned_cols=160 Identities=23% Similarity=0.310 Sum_probs=133.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE----EEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET----VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.-+|++++|+.|+|||+|+.+|..+++.. ...|+|+.... +-.+.+++++|||+|+++|+.....|++.+.+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 45799999999999999999999998877 66688866544 22356899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
|+|+++.++|..+..|+.+.. ....++.-+++++||.||... .++.-..+..+...+.+.+.++|+++|+|++|.|
T Consensus 88 VYD~TsrdsfnaLtnWL~DaR-~lAs~nIvviL~GnKkDL~~~---R~VtflEAs~FaqEnel~flETSa~TGeNVEEaF 163 (214)
T KOG0086|consen 88 VYDITSRDSFNALTNWLTDAR-TLASPNIVVILCGNKKDLDPE---REVTFLEASRFAQENELMFLETSALTGENVEEAF 163 (214)
T ss_pred EEeccchhhHHHHHHHHHHHH-hhCCCcEEEEEeCChhhcChh---hhhhHHHHHhhhcccceeeeeecccccccHHHHH
Confidence 999999999999999999985 445578889999999999754 3343344444556667789999999999999999
Q ss_pred HHHHHHHhh
Q 030149 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~~~~ 179 (182)
-...+.+..
T Consensus 164 l~c~~tIl~ 172 (214)
T KOG0086|consen 164 LKCARTILN 172 (214)
T ss_pred HHHHHHHHH
Confidence 888776643
No 105
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=1.8e-30 Score=171.71 Aligned_cols=155 Identities=18% Similarity=0.234 Sum_probs=115.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc-eeEEEEEE--cCeEEEEEEcCCCCC-CcchhhhccCCCCeEEEEEe
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQY--NNIKFQVWDLGGQTS-IRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~~~D~~g~~~-~~~~~~~~~~~~d~ii~v~d 93 (182)
+|+++|++|+|||||++++..+.+.. +.++.. .....+.. ....+.+||+||++. .......+++.+|++|+|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 58999999999999999999877754 555553 22222333 345789999999885 34556778899999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcc-cCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCC-CChHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEE-LRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKG-EGLFEG 169 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~-~gi~~l 169 (182)
++++++++.+..|+..+..... ..+.|+++|+||+|+.... ..++.. .+. +..+.+|+++||++| .|++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~----~~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGE-KLA----SELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHH-HHH----HHcCCEEEEeCCCCCchhHHHH
Confidence 9999999999888877665432 4579999999999985331 222211 111 223467999999999 499999
Q ss_pred HHHHHHHHh
Q 030149 170 LDWLSNTLK 178 (182)
Q Consensus 170 ~~~l~~~~~ 178 (182)
|+.+.+.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998764
No 106
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=1.6e-31 Score=164.95 Aligned_cols=157 Identities=24% Similarity=0.357 Sum_probs=129.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++.+|+|++|+|||||+.+|..+.|.. |..|+|.. ..++++ ...+++|||++|++.|+.+...+++..+++++|+
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 467899999999999999999998887 78888844 334444 5688999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
|+++.+||.+...|+.++.+.. +..|-++|+||.|..+.. -+..+.+..++...++.+|++|+++++|++..|.-
T Consensus 89 DVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~Rr---vV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERR---VVDTEDARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccce---eeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence 9999999999999999996654 378999999999987532 12222223334556777999999999999999999
Q ss_pred HHHHHhh
Q 030149 173 LSNTLKS 179 (182)
Q Consensus 173 l~~~~~~ 179 (182)
|.+++..
T Consensus 164 it~qvl~ 170 (198)
T KOG0079|consen 164 ITKQVLQ 170 (198)
T ss_pred HHHHHHH
Confidence 8887654
No 107
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=4.7e-30 Score=170.94 Aligned_cols=156 Identities=15% Similarity=0.187 Sum_probs=113.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc-eeEEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||+.++..+.+.. +.||.. .....+..+ ...+.+|||||++.+...+..+++++|++|+|+|
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 589999999999999999998877766 555542 111233333 4678999999999999999999999999999999
Q ss_pred CCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCCC---------HHHHHHHhccccccCCc-cEEEEecccC
Q 030149 94 SSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGALD---------DAAVTEALELHKIKNRQ-WAIFKTSAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~S~~~ 162 (182)
++++++|+... .|+..+... .++.|+++++||+|+..... .+.+.........+..+ .+++++||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 99999999886 455555432 24689999999999864321 00011101111112223 3799999999
Q ss_pred CCChHHHHHHHHH
Q 030149 163 GEGLFEGLDWLSN 175 (182)
Q Consensus 163 ~~gi~~l~~~l~~ 175 (182)
|.|++++|+.+.-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
No 108
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=7e-30 Score=175.84 Aligned_cols=156 Identities=17% Similarity=0.124 Sum_probs=118.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCc--ccccccc--eeEEEEEE--cCeEEEEEEcCCCCCCcchhhhccC-CCCeEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVV--STIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFP-NTQAIIY 90 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~--~~~~t~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~-~~d~ii~ 90 (182)
+||+++|++|+|||||++++..+.+. .+.++.+ .....+.+ ....+.+|||||++ ......++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999887774 3556553 33344444 55789999999998 223344566 8999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
|+|++++.+|+....|+..+.......+.|+++|+||+|+.+.... .+....+ ....+++++++||++|.|++++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~----a~~~~~~~~e~SA~~~~gv~~l 154 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRAC----AVVFDCKFIETSAGLQHNVDEL 154 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHH----HHHcCCeEEEecCCCCCCHHHH
Confidence 9999999999999888887766544467999999999998643221 1111111 1223567999999999999999
Q ss_pred HHHHHHHHhh
Q 030149 170 LDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~~~~ 179 (182)
|+++.+.+..
T Consensus 155 ~~~l~~~~~~ 164 (221)
T cd04148 155 LEGIVRQIRL 164 (221)
T ss_pred HHHHHHHHHh
Confidence 9999988863
No 109
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=1.4e-29 Score=171.96 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=123.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc-eeEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
||+++|++|+|||||++++..+.+.. +.+|.. .....+.+.+ ..+.+||+||+..+..++..+++.+|++++|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999888766 455553 3333444544 6889999999999988888899999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
+++.+++....|+..+.......+.|+++|+||+|+.............. ......+.+++++||++|.|++++|+++.
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~-~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALS-TVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHH-HHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 99999999998888887766556899999999999864211111111111 11112235699999999999999999999
Q ss_pred HHHh
Q 030149 175 NTLK 178 (182)
Q Consensus 175 ~~~~ 178 (182)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8764
No 110
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=7.2e-30 Score=174.69 Aligned_cols=158 Identities=18% Similarity=0.269 Sum_probs=125.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+.+||+++|++|+|||||++++....+.. +.+|.+.... .+... ...+.+|||+|++.+..++..+++.+|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 56899999999999999999999887765 5667665432 34443 3578899999999988889999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|+++++++..+..|+..+.... ..+.|+++++||+|+... ...++..+.. +..+++++++||+++.|+++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~e 158 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVEE 158 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 999999999999988887765432 357899999999999643 2222222222 22356799999999999999
Q ss_pred HHHHHHHHHhh
Q 030149 169 GLDWLSNTLKS 179 (182)
Q Consensus 169 l~~~l~~~~~~ 179 (182)
+|+++.+.+.+
T Consensus 159 ~f~~l~~~~~~ 169 (210)
T PLN03108 159 AFIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 111
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=2.2e-29 Score=166.95 Aligned_cols=158 Identities=17% Similarity=0.143 Sum_probs=121.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCc-c-cccccceeE--EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVV-S-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~-~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
++.+||+++|++|+|||||++++.++.+. . +.||.+... ..+...+ ..+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 56799999999999999999999999886 4 778877443 3444444 6789999999999988889899999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCcc-EEEEecccCCCCh
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQW-AIFKTSAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~S~~~~~gi 166 (182)
++|+|++++++++.+..|+..+.. ..+.|+++|+||+|+.+.... ....+.+.. ..++ .++++||++|.|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v 154 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCR----KLGLPPPLHFSSKLGDSS 154 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHH----HcCCCCCEEEEeccCccH
Confidence 999999999999888777765422 247899999999998643211 011111111 1122 3689999999999
Q ss_pred HHHHHHHHHHHhh
Q 030149 167 FEGLDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (182)
+++|+.+.+.+..
T Consensus 155 ~~lf~~l~~~~~~ 167 (169)
T cd01892 155 NELFTKLATAAQY 167 (169)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999987653
No 112
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=3.8e-29 Score=166.89 Aligned_cols=159 Identities=16% Similarity=0.262 Sum_probs=117.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+.||+++|++|||||||++++.++.+.. +.||.+... ..+.+. ...+.+|||||++.+...+..++.++|++++|+
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 3689999999999999999999988765 667766432 334443 457899999999998888888899999999999
Q ss_pred eCCCcchHHHHHH-HHHHHHhhcccCCCeEEEEeecCCCCCCCCHH-HHHH--------Hhcccccc-CCccEEEEeccc
Q 030149 93 DSSDTERLVIAKD-EFHAILEEEELRGAVVLIFANKQDLPGALDDA-AVTE--------ALELHKIK-NRQWAIFKTSAI 161 (182)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~-~~~~--------~~~~~~~~-~~~~~~~~~S~~ 161 (182)
|++++++++.... |...+... ..+.|+++|+||+|+.+..... ++.. .......+ ....++++|||+
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999988865 44444332 2478999999999986432111 1100 00001111 123479999999
Q ss_pred CCCChHHHHHHHHHHH
Q 030149 162 KGEGLFEGLDWLSNTL 177 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~ 177 (182)
+|.|++++|+++.+.+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998764
No 113
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.97 E-value=2e-29 Score=166.03 Aligned_cols=154 Identities=23% Similarity=0.301 Sum_probs=120.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce--eEEEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.+..+.. +.++.+. ....+.. ....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999887765 4444432 2233333 3457899999999988888998899999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
|+++++++.....|+..+..... .+.|+++++||+|+..... .++..+.. ...+.+++++|+++++|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYA-----KSVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999998888777765543 3789999999999874322 22222222 2235679999999999999999
Q ss_pred HHHHHHH
Q 030149 171 DWLSNTL 177 (182)
Q Consensus 171 ~~l~~~~ 177 (182)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998765
No 114
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=1.8e-29 Score=167.74 Aligned_cols=157 Identities=20% Similarity=0.266 Sum_probs=114.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEE--EcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQ--YNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||++++.+..+.. +.++..... .... .....+.+||+||++++.......++.+|++++|+|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 589999999999999999999988743 555443221 1222 245689999999999888888888899999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHH--------HHHHhccccccCCc-cEEEEecccCCC
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA--------VTEALELHKIKNRQ-WAIFKTSAIKGE 164 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~S~~~~~ 164 (182)
++++.++......|...+.... .+.|+++|+||+|+.+...... +............+ .+++++||++|+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9999998887765554443322 3799999999999975532211 01111111112223 379999999999
Q ss_pred ChHHHHHHHHH
Q 030149 165 GLFEGLDWLSN 175 (182)
Q Consensus 165 gi~~l~~~l~~ 175 (182)
|++++++.+.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
No 115
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=6.3e-29 Score=164.90 Aligned_cols=158 Identities=23% Similarity=0.331 Sum_probs=121.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc--eeEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...++|+++|++|+|||||++++..+.+.. +.+|.+ .....+.+.+ ..+.+||+||++.+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 345899999999999999999999776654 556665 3333445544 56899999999998888888999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
+|+|+++++++.....|+..+.. ....+.|+++++||+|+...... ....+.+. +....+++++||++|.|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQ-YANNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEK 159 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHH
Confidence 99999999999888877766543 33357899999999998643221 22222222 22336799999999999999
Q ss_pred HHHHHHHHH
Q 030149 169 GLDWLSNTL 177 (182)
Q Consensus 169 l~~~l~~~~ 177 (182)
+|+.+.+.+
T Consensus 160 l~~~i~~~~ 168 (169)
T cd04114 160 LFLDLACRL 168 (169)
T ss_pred HHHHHHHHh
Confidence 999998764
No 116
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=1.2e-28 Score=165.23 Aligned_cols=158 Identities=21% Similarity=0.299 Sum_probs=126.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce-eEEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-NVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~-~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
.||+++|++|+|||||++++.+..+.. +.||... ....+... +..+.+||+||++++...+..++..++++++|+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999887765 5555542 23334443 4567999999999998889899999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
.++..+++....++..+.+.....+.|+++|+||+|+.... ...+... +. ...+.+++++||+++.|+.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKE-LA----ESWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999998887666678999999999986422 2222221 11 12236799999999999999999
Q ss_pred HHHHHHhhc
Q 030149 172 WLSNTLKSI 180 (182)
Q Consensus 172 ~l~~~~~~~ 180 (182)
++.+.+.+.
T Consensus 157 ~l~~~~~~~ 165 (180)
T cd04137 157 LLIEEIEKV 165 (180)
T ss_pred HHHHHHHHh
Confidence 999988764
No 117
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=1.4e-28 Score=161.31 Aligned_cols=151 Identities=24% Similarity=0.375 Sum_probs=121.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.+..+.. +.+|.+........ ....+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999999888877 46677755554433 3478899999999998889999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC--CCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP--GALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
|++++++++....|+..+.... ....|+++++||+|+. .....++..+... ....+++++|++++.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Confidence 9999999999888777776543 2579999999999995 2223333333222 245679999999999999999
Q ss_pred HHHH
Q 030149 171 DWLS 174 (182)
Q Consensus 171 ~~l~ 174 (182)
++|.
T Consensus 155 ~~i~ 158 (159)
T cd00154 155 QSLA 158 (159)
T ss_pred HHHh
Confidence 9885
No 118
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.96 E-value=1.6e-28 Score=161.39 Aligned_cols=154 Identities=21% Similarity=0.259 Sum_probs=121.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc-eeEEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
||+++|++|||||||++++.+..+.. +.++.. .....+... ...+.+||+||+..+...+..+++.+|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999877655 455544 222333344 46889999999999888899999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
++++++.....++..+.........|+++++||+|+.... ..++...... ..+.+++++|++++.|++++++.
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHH
Confidence 9999999999999888776554689999999999987521 2222222221 12267999999999999999999
Q ss_pred HHHHH
Q 030149 173 LSNTL 177 (182)
Q Consensus 173 l~~~~ 177 (182)
|.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98753
No 119
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=1.8e-29 Score=158.38 Aligned_cols=162 Identities=23% Similarity=0.377 Sum_probs=136.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE--EEE---cCeEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~--~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
...++++++|++-+|||||+..+..+++.. ..||.|+.... +++ ..+++++|||+|++.|+.+...|++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 467899999999999999999999999988 78888865432 222 457899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCC-CeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRG-AVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
++++|+++.+||+-...|+.........+. .-+.+|++|+|+.+ .+++..+.++..+...+..|+++|+++|.|++
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S---qRqVt~EEaEklAa~hgM~FVETSak~g~NVe 162 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS---QRQVTAEEAEKLAASHGMAFVETSAKNGCNVE 162 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh---hccccHHHHHHHHHhcCceEEEecccCCCcHH
Confidence 999999999999999999988776655344 44689999999973 34555555556667778889999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
+.|..|.+.+..
T Consensus 163 EAF~mlaqeIf~ 174 (213)
T KOG0091|consen 163 EAFDMLAQEIFQ 174 (213)
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
No 120
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6e-29 Score=152.87 Aligned_cols=180 Identities=64% Similarity=1.042 Sum_probs=164.5
Q ss_pred CccchHHHhhhhcCC-cccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhh
Q 030149 1 MGIMFTRLFSSLFGN-KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 79 (182)
|+--+...+..++.. +..+++++|-.|+|||++..++.-++.....||++.+...+.+++.++++||..|+...+..|.
T Consensus 1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWR 80 (182)
T KOG0072|consen 1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWR 80 (182)
T ss_pred CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHH
Confidence 455567778888775 8999999999999999999999888889999999999999999999999999999999999999
Q ss_pred hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEec
Q 030149 80 CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.|+.+.|.+|||+|.++.+........+..++.....++..++++.||.|........+....++....+..-+.++++|
T Consensus 81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tS 160 (182)
T KOG0072|consen 81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTS 160 (182)
T ss_pred HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeec
Confidence 99999999999999999999988888888888877778899999999999988878888888888887788889999999
Q ss_pred ccCCCChHHHHHHHHHHHhhc
Q 030149 160 AIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~~~ 180 (182)
|.+|+|+++..+||.+.+.+.
T Consensus 161 A~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 161 AVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred cccccCCcHHHHHHHHHHhcc
Confidence 999999999999999988654
No 121
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=2.7e-28 Score=164.31 Aligned_cols=163 Identities=17% Similarity=0.220 Sum_probs=116.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+.||+++|++|+|||||++++..+.+.. +.+|..... ..+... ...+.+||++|++.+......++..+|++++|+
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 3589999999999999999998776654 455544322 233333 356899999999888777777789999999999
Q ss_pred eCCCcchHHHHHH-HHHHHHhhcccCCCeEEEEeecCCCCCCCCHH-------HHHHHhccccccCCc-cEEEEecccCC
Q 030149 93 DSSDTERLVIAKD-EFHAILEEEELRGAVVLIFANKQDLPGALDDA-------AVTEALELHKIKNRQ-WAIFKTSAIKG 163 (182)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~S~~~~ 163 (182)
|++++++++.+.. |+..+... . ++.|+++|+||+|+....... .+.........+..+ .++++|||++|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~-~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRY-C-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999875 55555433 2 469999999999985421110 000001111112223 46999999999
Q ss_pred CChHHHHHHHHHHHhhcC
Q 030149 164 EGLFEGLDWLSNTLKSIG 181 (182)
Q Consensus 164 ~gi~~l~~~l~~~~~~~~ 181 (182)
.|++++|+.+.+.+...+
T Consensus 159 ~~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 159 EGVDDVFEAATRAALLVR 176 (187)
T ss_pred CCHHHHHHHHHHHHhccc
Confidence 999999999998776543
No 122
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.96 E-value=1.3e-27 Score=158.42 Aligned_cols=153 Identities=20% Similarity=0.220 Sum_probs=107.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCeEEEEEEcCCCCCCcc---------hhhhccCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---------YWRCYFPNT 85 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~~~~~~ 85 (182)
.+|+++|++|+|||||++++.+..+.. ..+|.+.....+.+.+.++.+|||||..+... ........+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 479999999999999999999877642 12355566666666789999999999743110 011112236
Q ss_pred CeEEEEEeCCCcchH--HHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCC
Q 030149 86 QAIIYVVDSSDTERL--VIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKG 163 (182)
Q Consensus 86 d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (182)
|++++|+|+++..++ +....|+..+.... .+.|+++|+||+|+.......+. .. ......++++++||++|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~-~~----~~~~~~~~~~~~Sa~~~ 153 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEI-EE----EEELEGEEVLKISTLTE 153 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHH-HH----hhhhccCceEEEEeccc
Confidence 899999999887653 44445555554322 37899999999999754332221 11 12334567999999999
Q ss_pred CChHHHHHHHHHHH
Q 030149 164 EGLFEGLDWLSNTL 177 (182)
Q Consensus 164 ~gi~~l~~~l~~~~ 177 (182)
+|++++++++.+.+
T Consensus 154 ~gi~~l~~~l~~~~ 167 (168)
T cd01897 154 EGVDEVKNKACELL 167 (168)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998876
No 123
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.8e-29 Score=157.28 Aligned_cols=180 Identities=39% Similarity=0.687 Sum_probs=157.9
Q ss_pred CccchHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcC--------CCcccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030149 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMG--------EVVSTIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
|=..+..+|+-.+....+.|+++|..++|||||+.+.-.. +.....||.+.+..++......+.|||..|++
T Consensus 1 m~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe 80 (197)
T KOG0076|consen 1 MFTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE 80 (197)
T ss_pred ChhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH
Confidence 4456778888888899999999999999999999987421 12236779999999999999999999999999
Q ss_pred CCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcc-ccccCC
Q 030149 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALEL-HKIKNR 151 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~ 151 (182)
..+.+|..|+..+|++|++||+.++++++.....+..+.......+.|+++..||.|+.......++...+.. .....+
T Consensus 81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~r 160 (197)
T KOG0076|consen 81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRR 160 (197)
T ss_pred HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCc
Confidence 9999999999999999999999999999999999999988888889999999999999888777777777663 334456
Q ss_pred ccEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 152 QWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 152 ~~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
..++.++||.+|+||++-..|+...+++.
T Consensus 161 d~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 161 DNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 78899999999999999999999998765
No 124
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=4.1e-27 Score=161.87 Aligned_cols=160 Identities=22% Similarity=0.325 Sum_probs=128.1
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
.....+||+++|++|||||||++++..+.+.. +.+|.+.......+ +...+.+|||+|++.+...+..++..+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 34667999999999999999999887777654 78888876655444 45889999999999998888888999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+++|+|+++..++..+..|+..+.... .+.|+++++||+|+.+.....+.... ....++.++++|+++|.|++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITF-----HRKKNLQYYDISAKSNYNFE 157 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999988888776542 47899999999998643222222111 12345679999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
+.|.+|.+.+..
T Consensus 158 ~~f~~ia~~l~~ 169 (215)
T PTZ00132 158 KPFLWLARRLTN 169 (215)
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 125
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.4e-30 Score=159.53 Aligned_cols=161 Identities=22% Similarity=0.390 Sum_probs=132.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEE-----------cCeEEEEEEcCCCCCCcchhhhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY-----------NNIKFQVWDLGGQTSIRPYWRCY 81 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~-----------~~~~~~~~D~~g~~~~~~~~~~~ 81 (182)
.-++.+.+|++|+||||++.++..++|.. ...|+|+.. ..+-+ ..+-+++|||+|+++|+.+...+
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 34677899999999999999999999877 666777443 33333 12568999999999999999999
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEeccc
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
++++-+++++||.++.+||-+...|+.++..+..-.+.-+++++||+|+.. ...+.+......+...++|||++||-
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~---~R~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED---QRVVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh---hhhhhHHHHHHHHHHhCCCeeeeccc
Confidence 999999999999999999999999999988776666788999999999963 34444444444456678899999999
Q ss_pred CCCChHHHHHHHHHHHhh
Q 030149 162 KGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~~~ 179 (182)
+|.|+++..+.|.+.+.+
T Consensus 165 tg~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 165 TGTNVEKAVELLLDLVMK 182 (219)
T ss_pred cCcCHHHHHHHHHHHHHH
Confidence 999999988888777654
No 126
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=5.1e-28 Score=162.48 Aligned_cols=161 Identities=22% Similarity=0.233 Sum_probs=134.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce-e--EEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-N--VETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~-~--~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+..+|+++|.+|+|||+|..++..+.|.. +.||++. . ...++.....+.++||+|++++..+...+++.+|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46799999999999999999999999887 7888862 2 223333557889999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
+++++..||+.+..++.++.+.......|+++|+||+|+... ..+..+.+...+...+++|+|+||+.+.+++++|.
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~---R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE---RQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc---cccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence 999999999999999999977777777899999999999753 22222222333556677899999999999999999
Q ss_pred HHHHHHhh
Q 030149 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~~~~ 179 (182)
.|...+..
T Consensus 159 ~L~r~~~~ 166 (196)
T KOG0395|consen 159 ELVREIRL 166 (196)
T ss_pred HHHHHHHh
Confidence 99998765
No 127
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.95 E-value=4.1e-27 Score=156.34 Aligned_cols=156 Identities=24% Similarity=0.203 Sum_probs=109.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCe-EEEEEEcCCCCC----Ccchhh---hccCCCCe
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNI-KFQVWDLGGQTS----IRPYWR---CYFPNTQA 87 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~----~~~~~~---~~~~~~d~ 87 (182)
+|+++|.+|+|||||++++.+..... ..+|.......+.+.+. .+.+|||||..+ ...+.. ..+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 68999999999999999998765421 12244444445556665 999999999632 112222 23456999
Q ss_pred EEEEEeCCCc-chHHHHHHHHHHHHhhcc-cCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 88 IIYVVDSSDT-ERLVIAKDEFHAILEEEE-LRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
+++|+|++++ ++++....|...+..... ..+.|+++|+||+|+.+.....+....... .....+++++|++++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK---ELWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh---hCCCCCEEEEecCCCCC
Confidence 9999999998 788888777776654321 246899999999999754333332222211 11345699999999999
Q ss_pred hHHHHHHHHHHH
Q 030149 166 LFEGLDWLSNTL 177 (182)
Q Consensus 166 i~~l~~~l~~~~ 177 (182)
++++++++.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 128
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=2.9e-28 Score=152.29 Aligned_cols=162 Identities=20% Similarity=0.264 Sum_probs=129.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc--eeEEEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...++++++|..=+|||||+-++..++|.. -..|.. +...+++. ....+.||||+|++.|..+-+.|++++|+.+
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 567999999999999999999999888865 333333 22233333 4567899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+|+++.+||...+.|...+....+ ...-+++|+||+||.++ ..+....+...++..+..|+++||+.+.||.++
T Consensus 91 LVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEee---R~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~el 166 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEE---RQVTRQEAEAYAESVGALYMETSAKDNVGISEL 166 (218)
T ss_pred EEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHh---hhhhHHHHHHHHHhhchhheecccccccCHHHH
Confidence 99999999999999999999865543 56789999999999643 233333333444556667999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
|+.|...+.+.
T Consensus 167 Fe~Lt~~MiE~ 177 (218)
T KOG0088|consen 167 FESLTAKMIEH 177 (218)
T ss_pred HHHHHHHHHHH
Confidence 99998877654
No 129
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.95 E-value=6.7e-27 Score=158.16 Aligned_cols=146 Identities=18% Similarity=0.278 Sum_probs=111.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEE-------cCeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY-------NNIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
+||+++|+.|+|||||++++.++.+.. +.||++.... .+.+ ..+.+.+|||+|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999988876 7778874432 3333 23679999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhc------------------ccCCCeEEEEeecCCCCCC--CCHHHHHHHhcccc
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEE------------------ELRGAVVLIFANKQDLPGA--LDDAAVTEALELHK 147 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~ 147 (182)
+|+|+|++++++++.+..|+..+.... ...+.|+++|+||+|+.+. ...+..... ....
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~-~~~i 159 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTA-RGFV 159 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhH-hhhH
Confidence 999999999999999999998886532 2246899999999999643 111211111 1222
Q ss_pred ccCCccEEEEecccCCC
Q 030149 148 IKNRQWAIFKTSAIKGE 164 (182)
Q Consensus 148 ~~~~~~~~~~~S~~~~~ 164 (182)
+...+.+.++.+|.++.
T Consensus 160 a~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 160 AEQGNAEEINLNCTNGR 176 (202)
T ss_pred HHhcCCceEEEecCCcc
Confidence 34456678888887543
No 130
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.95 E-value=5.9e-27 Score=154.63 Aligned_cols=154 Identities=21% Similarity=0.143 Sum_probs=102.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC---cc---cccccceeEEEEEEc-CeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEV---VS---TIPTIGFNVETVQYN-NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~---~~---~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+.|+++|++|+|||||++++.+... .. ...|.+.....+.+. +..+.+|||||++++......+++.+|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 4689999999999999999986432 11 122444444555555 7899999999998887767777889999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccccc--CCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIK--NRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|+++... ......+. ..... ...|+++++||+|+................... ....+++++||++|+|+++
T Consensus 81 V~d~~~~~~-~~~~~~~~-~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 156 (164)
T cd04171 81 VVAADEGIM-PQTREHLE-ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEE 156 (164)
T ss_pred EEECCCCcc-HhHHHHHH-HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHH
Confidence 999976311 11112222 11221 124899999999997532111112221111111 1356799999999999999
Q ss_pred HHHHHHH
Q 030149 169 GLDWLSN 175 (182)
Q Consensus 169 l~~~l~~ 175 (182)
+++.+..
T Consensus 157 l~~~l~~ 163 (164)
T cd04171 157 LKEYLDE 163 (164)
T ss_pred HHHHHhh
Confidence 9998754
No 131
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.95 E-value=2.4e-26 Score=156.94 Aligned_cols=154 Identities=21% Similarity=0.199 Sum_probs=109.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCe-EEEEEEcCCCCCCcc--h------hhhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNI-KFQVWDLGGQTSIRP--Y------WRCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~--~------~~~~~ 82 (182)
+..++|+++|++|||||||++++.+..+.. ..+|.......+.+.+. .+.+|||||..+... . ....+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 118 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEV 118 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999876432 34455555556666554 899999999733211 0 11235
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
..+|++++|+|++++.++.....+... +......+.|+++|+||+|+.+..... . .......+++++||++
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~-l~~~~~~~~~viiV~NK~Dl~~~~~~~---~-----~~~~~~~~~~~~Sa~~ 189 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKV-LKELGAEDIPMILVLNKIDLLDDEELE---E-----RLEAGRPDAVFISAKT 189 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHHHHHHH-HHHcCcCCCCEEEEEEccccCChHHHH---H-----HhhcCCCceEEEEcCC
Confidence 689999999999988877665444433 333333568999999999996542221 1 1223345699999999
Q ss_pred CCChHHHHHHHHHHH
Q 030149 163 GEGLFEGLDWLSNTL 177 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~ 177 (182)
+.|+++++++|.+.+
T Consensus 190 ~~gi~~l~~~L~~~~ 204 (204)
T cd01878 190 GEGLDELLEAIEELL 204 (204)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999998754
No 132
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.95 E-value=4e-26 Score=151.25 Aligned_cols=155 Identities=21% Similarity=0.129 Sum_probs=109.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCccc---ccccceeEEEEEEc---CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVST---IPTIGFNVETVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~---~~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.|+++|++|+|||||++++....+... ..|.......+... +..+.+|||||+..+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 589999999999999999998776552 22333333444443 689999999999988888888889999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccc-----ccCCccEEEEecccCCCChH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHK-----IKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~gi~ 167 (182)
|+++..... ....+..+ . ..+.|+++|+||+|+.+.. .+.+...+.... ......+++++|+++|+|++
T Consensus 82 d~~~~~~~~-~~~~~~~~-~---~~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQ-TIEAIKLA-K---AANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHH-HHHHHHHH-H---HcCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 998754211 11122222 2 2468999999999987442 223322222111 11235679999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
+++++|.+...+
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T cd01887 156 DLLEAILLLAEK 167 (168)
T ss_pred HHHHHHHHhhhc
Confidence 999999887654
No 133
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=2.2e-26 Score=154.07 Aligned_cols=153 Identities=16% Similarity=0.160 Sum_probs=106.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------Ccc-cccc------cceeE----EEEE-----EcCeEEEEEEcCCCCCCc
Q 030149 19 RILVLGLDNAGKTTILYRLQMGE-------VVS-TIPT------IGFNV----ETVQ-----YNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~-------~~~-~~~t------~~~~~----~~~~-----~~~~~~~~~D~~g~~~~~ 75 (182)
+|+++|++++|||||++++++.. +.. +.++ .+.+. ..+. ..+..+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998642 111 2221 12221 1222 246778999999999999
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEE
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAI 155 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
..+..+++.+|++|+|+|+++..+......+.. ... .+.|+++|+||+|+.+.. .....+.+.... ......+
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~-~~~~~~~ 154 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSAD-PERVKQQIEDVL-GLDPSEA 154 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCC-HHHHHHHHHHHh-CCCcccE
Confidence 999999999999999999988766555444432 221 468999999999986432 222222222111 1122359
Q ss_pred EEecccCCCChHHHHHHHHHHHh
Q 030149 156 FKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 156 ~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+++||++|+|++++++++.+.+.
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 155 ILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred EEeeccCCCCHHHHHHHHHhhCC
Confidence 99999999999999999988753
No 134
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.4e-27 Score=143.37 Aligned_cols=161 Identities=19% Similarity=0.278 Sum_probs=132.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccc-ccceeEE----EEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIP-TIGFNVE----TVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~-t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...++-+++|+-|+|||+|+..+...++...-| |+++... .+...+.++++|||+|+++|+.....+++.+.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 467899999999999999999999999887555 6665443 34447789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+|+++..++.-+..|+.+.. .+..++..+++++||.|+... +++.-+....+.+..++-++++|+++|+++++.
T Consensus 89 mvyditrrstynhlsswl~dar-~ltnpnt~i~lignkadle~q---rdv~yeeak~faeengl~fle~saktg~nveda 164 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDAR-NLTNPNTVIFLIGNKADLESQ---RDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhhh-ccCCCceEEEEecchhhhhhc---ccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence 9999999999999999998874 456688999999999999532 222333334455677888999999999999999
Q ss_pred HHHHHHHHhh
Q 030149 170 LDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~~~~ 179 (182)
|-....++.+
T Consensus 165 fle~akkiyq 174 (215)
T KOG0097|consen 165 FLETAKKIYQ 174 (215)
T ss_pred HHHHHHHHHH
Confidence 9877776654
No 135
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=6.6e-26 Score=163.70 Aligned_cols=159 Identities=21% Similarity=0.221 Sum_probs=116.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEE-cCeEEEEEEcCCCCC-------CcchhhhccCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTS-------IRPYWRCYFPNTQ 86 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 86 (182)
..|+++|.|+||||||++++.+.+... ...|...+...+.+ +..++.+||+||..+ +...+..+++.++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 579999999999999999998755321 23466677777777 567899999999632 2223344667899
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHhhcc-cCCCeEEEEeecCCCCCCCCHH-HHHHHhccccccCCccEEEEecccCCC
Q 030149 87 AIIYVVDSSDTERLVIAKDEFHAILEEEE-LRGAVVLIFANKQDLPGALDDA-AVTEALELHKIKNRQWAIFKTSAIKGE 164 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (182)
++++|+|+++.++++....|...+..+.. ..++|+++|+||+|+.+..... ...+.. ....+.+++++||++++
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i~~iSAktg~ 314 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPVFLISAVTGE 314 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCEEEEEcCCCC
Confidence 99999999988888888777776654421 2468999999999997543221 111111 12224679999999999
Q ss_pred ChHHHHHHHHHHHhhc
Q 030149 165 GLFEGLDWLSNTLKSI 180 (182)
Q Consensus 165 gi~~l~~~l~~~~~~~ 180 (182)
|+++++++|.+.+.+.
T Consensus 315 GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 315 GLDELLRALWELLEEA 330 (335)
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988654
No 136
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=1.6e-28 Score=149.40 Aligned_cols=156 Identities=22% Similarity=0.363 Sum_probs=124.5
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCcc--cccccceeEEE--EEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 21 LVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 21 ~v~G~~~~GKtsli~~~~~~~~~~--~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
+++|++++|||+|+-++-.+.+.. ..+|.|+.+.. +.+ .++++++|||+|+++|+.....|++++|++++++|+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 368999999999998887777655 55677654332 333 568899999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
.+..||++...|+.++.++. ...+.+.+++||+|+..+ .-+.....+..++..++|+.++||++|.|++..|-.|.
T Consensus 81 ankasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~a~e---r~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia 156 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDLAHE---RAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIA 156 (192)
T ss_pred ccchhHHHHHHHHHHHHHHH-HhhHhHhhhccccccchh---hccccchHHHHHHHHCCCceeccccccccHhHHHHHHH
Confidence 99999999999999987663 356788999999999532 11122222233345578899999999999999999999
Q ss_pred HHHhhc
Q 030149 175 NTLKSI 180 (182)
Q Consensus 175 ~~~~~~ 180 (182)
+.+.++
T Consensus 157 ~~l~k~ 162 (192)
T KOG0083|consen 157 EELKKL 162 (192)
T ss_pred HHHHHh
Confidence 988765
No 137
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.94 E-value=8.8e-26 Score=152.28 Aligned_cols=155 Identities=22% Similarity=0.196 Sum_probs=113.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccc-------------------cccceeEEEEEEcCeEEEEEEcCCCCCCcchhh
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTI-------------------PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 79 (182)
+|+++|.+|+|||||++++.+....... .+.........+....+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 5899999999999999999877654321 223344455566788999999999998888888
Q ss_pred hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHH----HHHHhccccc-------
Q 030149 80 CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA----VTEALELHKI------- 148 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~----~~~~~~~~~~------- 148 (182)
.+++.+|++++|+|+.++.+... ...+.... ..+.|+++++||+|+..+..... +.+.+.....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~----~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIAR----EGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHH----HCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 88999999999999987654322 22222222 25799999999999976433322 2222222111
Q ss_pred --cCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 149 --KNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 149 --~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
.....+++++||++|.|++++++.+.+.+.
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 234678999999999999999999998864
No 138
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=2.8e-25 Score=145.51 Aligned_cols=153 Identities=22% Similarity=0.265 Sum_probs=114.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE--EEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+||+++|++|+|||||++++....+.. +.++.+..... +..++ ..+.+||+||+..+...+....+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 3799999999999999999999887433 44555544433 55566 7899999999999988888888899999999
Q ss_pred EeCCCc-chHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 92 VDSSDT-ERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|.... .++.... .+...+.... ..+.|+++++||+|+......+.....+.. ....+++++||.+|.|++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHA-ESNVPIILVGNKIDLRDAKLKTHVAFLFAK----LNGEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhc-ccCCcEEEEEEcccCCcchhhHHHHHHHhh----ccCCceEEeecCCCCCHHHH
Confidence 998776 5555555 4444443333 237899999999999764333333333332 23445999999999999999
Q ss_pred HHHHH
Q 030149 170 LDWLS 174 (182)
Q Consensus 170 ~~~l~ 174 (182)
+++|.
T Consensus 156 ~~~l~ 160 (161)
T TIGR00231 156 FKIVE 160 (161)
T ss_pred HHHhh
Confidence 99864
No 139
>PRK15494 era GTPase Era; Provisional
Probab=99.94 E-value=2.7e-25 Score=161.44 Aligned_cols=156 Identities=17% Similarity=0.231 Sum_probs=109.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccc----ccceeEEEEEEcCeEEEEEEcCCCCCC-cchh-------hhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYNNIKFQVWDLGGQTSI-RPYW-------RCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~~-------~~~~ 82 (182)
.+..+|+++|.+|+|||||+|++.+.++....+ |.......+..++..+.+|||||..+. ..+. ...+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 566799999999999999999999888754333 444444556668889999999997532 2111 1347
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
..+|++++|+|..+ ++.....++...+.. .+.|.++|+||+|+... ...+..+.+.. ......++++||++
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~---~~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTE---NHPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHh---cCCCcEEEEEeccC
Confidence 79999999999754 344444444333322 24677889999998643 23333333221 12235699999999
Q ss_pred CCChHHHHHHHHHHHhh
Q 030149 163 GEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~~ 179 (182)
|.|+++++++|.+.+..
T Consensus 201 g~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 201 GKNIDGLLEYITSKAKI 217 (339)
T ss_pred ccCHHHHHHHHHHhCCC
Confidence 99999999999987754
No 140
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.94 E-value=3e-25 Score=167.98 Aligned_cols=160 Identities=15% Similarity=0.150 Sum_probs=113.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEEcCeEEEEEEcCCCCCC----------cch-hhh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSI----------RPY-WRC 80 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~-~~~ 80 (182)
..++|+++|.+|+|||||++++++..... ..+ |.......+.+++..+.+|||||.... ... ...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 46899999999999999999999887533 222 333444556678889999999995321 111 123
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
+++.+|++++|+|+++..++.... ++..+. ..+.|+++|+||+|+.+.....................+++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~----~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVI----EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHH----HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 578999999999999887766553 333332 247899999999999754322323333322222233467999999
Q ss_pred cCCCChHHHHHHHHHHHhhc
Q 030149 161 IKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~~ 180 (182)
++|.|++++|+.+.+.+...
T Consensus 365 k~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 365 KTGRAVDKLVPALETALESW 384 (472)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999887654
No 141
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.94 E-value=2.4e-25 Score=157.72 Aligned_cols=152 Identities=20% Similarity=0.131 Sum_probs=103.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCccccc---ccc-eeEEEEEEcCeEEEEEEcCCCCCCcc--------hhhhccCCCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIP---TIG-FNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCYFPNTQ 86 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~---t~~-~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~d 86 (182)
+|+++|.+|+|||||+|++.+.+.....+ |.. ........++..+.+|||||...... ....+++.+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 68999999999999999999987654333 222 22222233567899999999754321 1234578999
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 87 AIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+... +................+++++||++|.|+
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~---~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFK---DKLLPLIDKYAILEDFKDIVPISALTGDNT 152 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCH---HHHHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence 999999998876653 222222222 46899999999999643 222211111111111226999999999999
Q ss_pred HHHHHHHHHHHhh
Q 030149 167 FEGLDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (182)
+++++.+.+.+..
T Consensus 153 ~~L~~~l~~~l~~ 165 (270)
T TIGR00436 153 SFLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999988754
No 142
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.94 E-value=6e-26 Score=149.51 Aligned_cols=164 Identities=16% Similarity=0.238 Sum_probs=123.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc-eeEEEEE---EcCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQ---YNNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~-~~~~~~~---~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...++++|+|+..+|||+|+-.+..+.|.. +.||.- .....+. ...+.+.+|||+|++++..++...+.++|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 457899999999999999999999888877 888765 2222233 34577899999999999999989999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHH--------hccccccC-CccEEEEec
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEA--------LELHKIKN-RQWAIFKTS 159 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~--------~~~~~~~~-~~~~~~~~S 159 (182)
+||++.+++|+.+....|..-+.+.. ++.|+|+|++|.||..+... +..... .....++. ....|+|||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 99999999999998754444444444 79999999999999843211 111100 00011111 235699999
Q ss_pred ccCCCChHHHHHHHHHHHhh
Q 030149 160 AIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~~ 179 (182)
|++..|++++|+........
T Consensus 161 a~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhc
Confidence 99999999999998887654
No 143
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.94 E-value=1.2e-24 Score=142.46 Aligned_cols=143 Identities=20% Similarity=0.163 Sum_probs=105.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCccc--cc--ccceeEEEEEEcCeEEEEEEcCCCCCCcch--------hhhccCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVST--IP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYFPNT 85 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~~ 85 (182)
++|+++|++|+|||||++++.+...... .+ +.......+...+.++.+|||||..+.... ....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 5899999999999999999998765332 22 223434455667889999999997655332 22456789
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
|++++|+|++++.+......+.. ....|+++|+||+|+...... .......+++++||+++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998776655443222 257999999999999754332 1233456799999999999
Q ss_pred hHHHHHHHHHHH
Q 030149 166 LFEGLDWLSNTL 177 (182)
Q Consensus 166 i~~l~~~l~~~~ 177 (182)
+++++++|.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 144
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.93 E-value=6e-25 Score=158.63 Aligned_cols=156 Identities=23% Similarity=0.230 Sum_probs=113.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcC-eEEEEEEcCCCCCC-------cchhhhccCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQTSI-------RPYWRCYFPNTQ 86 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~~~~~~~~~d 86 (182)
..|+++|.++||||||++++...+... ..+|...+...+.+.+ ..+.+||+||..+. ...+..+++.++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 679999999999999999998765321 2345566666777766 89999999996421 222334456799
Q ss_pred eEEEEEeCCCc---chHHHHHHHHHHHHhhc-ccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 87 AIIYVVDSSDT---ERLVIAKDEFHAILEEE-ELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 87 ~ii~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
++++|+|+++. ++++....|..++.... ...++|+++|+||+|+.+....++..+.+.. ..+.+++++||++
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~----~~~~~vi~iSAkt 313 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK----ALGKPVFPISALT 313 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH----HcCCcEEEEEccC
Confidence 99999999876 56777766666554432 2247899999999999755333333333321 1235799999999
Q ss_pred CCChHHHHHHHHHHH
Q 030149 163 GEGLFEGLDWLSNTL 177 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~ 177 (182)
++|++++++++.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998765
No 145
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.93 E-value=6.8e-25 Score=143.92 Aligned_cols=146 Identities=25% Similarity=0.255 Sum_probs=103.7
Q ss_pred EEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcc------hhhhcc--CCCCeEEE
Q 030149 22 VLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRP------YWRCYF--PNTQAIIY 90 (182)
Q Consensus 22 v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~~d~ii~ 90 (182)
++|.+|+|||||++++.+..... ..+ |.......+.+++..+.+|||||+..+.. ++..++ +.+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999876332 333 44455566777778999999999876654 244445 48999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
|+|+.+++.. ..++..+.. .++|+++|+||+|+............+. ...+.+++++|+.+|.|+++++
T Consensus 81 v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLS----ELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHH----HhhCCCeEEEEccCCCCHHHHH
Confidence 9999876442 233333322 3689999999999965432222112221 1224579999999999999999
Q ss_pred HHHHHHHh
Q 030149 171 DWLSNTLK 178 (182)
Q Consensus 171 ~~l~~~~~ 178 (182)
+.+.+.++
T Consensus 150 ~~l~~~~~ 157 (158)
T cd01879 150 DAIAELAE 157 (158)
T ss_pred HHHHHHhc
Confidence 99988765
No 146
>PRK04213 GTP-binding protein; Provisional
Probab=99.93 E-value=8.6e-26 Score=153.85 Aligned_cols=161 Identities=23% Similarity=0.238 Sum_probs=100.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEEcCeEEEEEEcCCC-----------CCCcchhhhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQ-----------TSIRPYWRCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~-----------~~~~~~~~~~~ 82 (182)
...++|+++|.+|+|||||++++.+..+.. ..|+.+.....+.+. .+.+|||||. +.++..+..++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 456899999999999999999999877543 334333333333333 7999999994 33333333333
Q ss_pred ----CCCCeEEEEEeCCCcchHHH---------HHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccc-
Q 030149 83 ----PNTQAIIYVVDSSDTERLVI---------AKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELH- 146 (182)
Q Consensus 83 ----~~~d~ii~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~- 146 (182)
..++++++|+|......... ....+..... ..+.|+++|+||+|+.... ...++.+.+...
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 161 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP 161 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcHHHHHHHHHHHhcCCc
Confidence 34678899999764322100 0011112222 2479999999999996542 112222222210
Q ss_pred cccCCccEEEEecccCCCChHHHHHHHHHHHhhcC
Q 030149 147 KIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSIG 181 (182)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~~ 181 (182)
.....+.+++++||++| |+++++++|.+.+.+.+
T Consensus 162 ~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 162 PWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred cccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 00111236899999999 99999999999887654
No 147
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.93 E-value=2.9e-25 Score=136.32 Aligned_cols=164 Identities=44% Similarity=0.765 Sum_probs=148.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcC-eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN-IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
.+.++++++|-.++||||++..+.+.+..-..||.|++..++.+.+ ..+++||.+|+...+..|..|+.+.|.+|||+|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVID 94 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVID 94 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEe
Confidence 7889999999999999999999998888889999999999999955 999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
..+...|++....+..+.+.......|+.+..||.|+.-....+++...+.....+..-+-+-+||+.+++|+.+-.+++
T Consensus 95 S~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv 174 (185)
T KOG0074|consen 95 STDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWV 174 (185)
T ss_pred CCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchhh
Confidence 99999999999999888888777889999999999998777778887777777777777889999999999999988888
Q ss_pred HHHHh
Q 030149 174 SNTLK 178 (182)
Q Consensus 174 ~~~~~ 178 (182)
....+
T Consensus 175 ~sn~~ 179 (185)
T KOG0074|consen 175 QSNPE 179 (185)
T ss_pred hcCCC
Confidence 76543
No 148
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.93 E-value=7.3e-25 Score=159.47 Aligned_cols=150 Identities=23% Similarity=0.208 Sum_probs=109.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEE-cCeEEEEEEcCCCC-C--------Ccchhhhcc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQT-S--------IRPYWRCYF 82 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~g~~-~--------~~~~~~~~~ 82 (182)
..++|+++|.+|+|||||+|++.+..... ..+|.+.....+.+ ++..+.+|||||.. . +... ...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~t-le~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRAT-LEEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHH-HHHH
Confidence 44899999999999999999999876432 35577777777777 57899999999972 1 1221 2247
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
.++|++++|+|++++.+.+....+. .++......+.|+++|+||+|+... +.+..... ...+++++||++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~-~~L~~l~~~~~piIlV~NK~Dl~~~---~~v~~~~~------~~~~~i~iSAkt 336 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVE-KVLEELGAEDIPQLLVYNKIDLLDE---PRIERLEE------GYPEAVFVSAKT 336 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHH-HHHHHhccCCCCEEEEEEeecCCCh---HhHHHHHh------CCCCEEEEEccC
Confidence 7899999999999988766554333 3334333357899999999999643 22221111 123489999999
Q ss_pred CCChHHHHHHHHHH
Q 030149 163 GEGLFEGLDWLSNT 176 (182)
Q Consensus 163 ~~gi~~l~~~l~~~ 176 (182)
|.|++++++.|.+.
T Consensus 337 g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 337 GEGLDLLLEAIAER 350 (351)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998764
No 149
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.93 E-value=4.1e-25 Score=147.44 Aligned_cols=152 Identities=24% Similarity=0.191 Sum_probs=107.3
Q ss_pred EEcCCCCCHHHHHHHHhcCCC--cc-cccccceeEEEEEEc-CeEEEEEEcCCCCC----Ccc---hhhhccCCCCeEEE
Q 030149 22 VLGLDNAGKTTILYRLQMGEV--VS-TIPTIGFNVETVQYN-NIKFQVWDLGGQTS----IRP---YWRCYFPNTQAIIY 90 (182)
Q Consensus 22 v~G~~~~GKtsli~~~~~~~~--~~-~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~----~~~---~~~~~~~~~d~ii~ 90 (182)
++|++|+|||||++++.+... .. ..+|.......+.+. +..+.+|||||... ... .....++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999998764 22 233455555566667 89999999999632 112 22345778999999
Q ss_pred EEeCCCc------chHHHHHHHHHHHHhhcc------cCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEe
Q 030149 91 VVDSSDT------ERLVIAKDEFHAILEEEE------LRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 91 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
|+|+.++ .++.....+...+..... ..+.|+++|+||+|+.......... ..........+++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence 9999888 466666666666544322 1479999999999997543322221 111222345569999
Q ss_pred cccCCCChHHHHHHHHHH
Q 030149 159 SAIKGEGLFEGLDWLSNT 176 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~ 176 (182)
|++++.|++++++.+...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998764
No 150
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.93 E-value=3.9e-25 Score=149.53 Aligned_cols=156 Identities=20% Similarity=0.118 Sum_probs=103.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC----Ccc------cccccceeEEEEEEc--------------CeEEEEEEcCCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE----VVS------TIPTIGFNVETVQYN--------------NIKFQVWDLGGQTS 73 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~----~~~------~~~t~~~~~~~~~~~--------------~~~~~~~D~~g~~~ 73 (182)
+||+++|++++|||||++++.... +.. ...|.+.....+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999998631 111 123444444444433 67999999999876
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHH----HHHhcccc--
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAV----TEALELHK-- 147 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~----~~~~~~~~-- 147 (182)
+........+.+|++++|+|+.+.........+ . +... .+.|+++++||+|+......+.. .+.+....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~-~-~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECL-V-IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHH-H-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 544444446678999999999875433222111 1 1121 25799999999999743322222 22211111
Q ss_pred ccCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 148 IKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 148 ~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
....+++++++||++|+|+++|++.|.+++.
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1124678999999999999999999988764
No 151
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.93 E-value=9.9e-25 Score=164.17 Aligned_cols=160 Identities=19% Similarity=0.133 Sum_probs=113.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccc----ccceeEEEEEEcCeEEEEEEcCCCCCCcch-----------hh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYNNIKFQVWDLGGQTSIRPY-----------WR 79 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~~ 79 (182)
.+.++|+++|.+|+|||||++++++.......+ |.......+..++..+.+|||||..+.... ..
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 345899999999999999999999876433222 333334455567789999999997544322 12
Q ss_pred hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC-CCCCHHHHHHHhccccccCCccEEEEe
Q 030149 80 CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP-GALDDAAVTEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
.+++.+|++|+|+|+.++.+.... ..+... ...+.|+++|+||+|+. +....+++...+.........++++++
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~----~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 324 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDL-RIAGLI----LEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFI 324 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHH-HHHHHH----HHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEE
Confidence 467899999999999887655443 222222 22478999999999997 222233444444433333356789999
Q ss_pred cccCCCChHHHHHHHHHHHhh
Q 030149 159 SAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~~~~ 179 (182)
||++|.|++++++++.+....
T Consensus 325 SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 325 SALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999887654
No 152
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=1.3e-25 Score=144.87 Aligned_cols=134 Identities=28% Similarity=0.319 Sum_probs=92.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCC-----CCcchhhhccCCCCeEEEEEe
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQT-----SIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~d~ii~v~d 93 (182)
||+++|++|+|||||++++.+..+. +.+|.+. .+.. .+|||||.. .+..+. ..++++|++++|+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~-----~~~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAV-----EYND---GAIDTPGEYVENRRLYSALI-VTAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeE-----EEcC---eeecCchhhhhhHHHHHHHH-HHhhcCCEEEEEec
Confidence 7999999999999999999977652 3344332 2222 789999973 122222 34789999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC-CHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL-DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
++++.++... . +.... ..|+++|+||+|+.+.. ..++..+.... ....+++++||++|.|++++|++
T Consensus 72 ~~~~~s~~~~-~-~~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 72 ATDPESRFPP-G-FASIF------VKPVIGLVTKIDLAEADVDIERAKELLET----AGAEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred CCCCCcCCCh-h-HHHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHH----cCCCcEEEEecCCCCCHHHHHHH
Confidence 9999876542 2 22221 24999999999996432 22222222211 11236999999999999999998
Q ss_pred HH
Q 030149 173 LS 174 (182)
Q Consensus 173 l~ 174 (182)
+.
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 74
No 153
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.93 E-value=6.5e-25 Score=142.68 Aligned_cols=150 Identities=31% Similarity=0.397 Sum_probs=114.7
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-cc-cccccceeEEEEEEc----CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCC
Q 030149 22 VLGLDNAGKTTILYRLQMGEV-VS-TIPTIGFNVETVQYN----NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSS 95 (182)
Q Consensus 22 v~G~~~~GKtsli~~~~~~~~-~~-~~~t~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
++|++|+|||||++++.+... .. ..+|. ......... ...+.+||+||.......+...++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998776 33 44444 444444443 788999999999888887788889999999999999
Q ss_pred CcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 96 DTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
++.++.....++..........+.|+++++||+|+.......... ...........+++++|+.++.|+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE--LAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH--HHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 998888887774444445555789999999999997654433321 11112234567799999999999999999875
No 154
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.93 E-value=3e-24 Score=142.75 Aligned_cols=155 Identities=19% Similarity=0.158 Sum_probs=106.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcc-----------hhhhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRP-----------YWRCY 81 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~~~ 81 (182)
.++|+++|++|+|||||++++.+..... ..+ +.......+..++..+.+|||||...... .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 5789999999999999999998876432 222 22233344556778899999999654311 11234
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEec
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
++.+|++++|+|+.++.+.... ..+... ...+.|+++++||+|+... ...+...+............+++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~----~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLI----LEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHH----HhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 6789999999999888765432 222222 1246899999999999755 22333333443322222346799999
Q ss_pred ccCCCChHHHHHHHHHH
Q 030149 160 AIKGEGLFEGLDWLSNT 176 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~ 176 (182)
|++++|++++++.+.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 155
>PLN00023 GTP-binding protein; Provisional
Probab=99.93 E-value=1.5e-24 Score=153.62 Aligned_cols=122 Identities=18% Similarity=0.327 Sum_probs=102.6
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc---------------CeEEEEEEcCCCCC
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN---------------NIKFQVWDLGGQTS 73 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~---------------~~~~~~~D~~g~~~ 73 (182)
..+...+||+++|+.|+|||||++++.++.+.. +.+|++... ..+.++ .+.+.||||+|++.
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 455778999999999999999999999988766 678887654 334432 35699999999999
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcc-----------cCCCeEEEEeecCCCCCC
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEE-----------LRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~~iivv~nK~Dl~~~ 133 (182)
+..++..+++++|++|+|+|+++.++++.+..|+..+..... ..+.|+++|+||+|+...
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 999999999999999999999999999999999988876421 135899999999999643
No 156
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.93 E-value=2.2e-24 Score=161.92 Aligned_cols=147 Identities=21% Similarity=0.271 Sum_probs=110.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCc--ccc--cccceeEEEEEEcCeEEEEEEcCCCCCCcch--------hhhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVV--STI--PTIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~--~~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 82 (182)
...++|+++|.+|+|||||+|++.+.+.. ... .|.+.....+.+++..+.+|||||..+.... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 34589999999999999999999987643 222 2445556667778899999999998754432 23467
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
+.+|++++|+|++++.+++.... +.. ..+.|+++|+||+|+.+..... .....+++++||++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~-l~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEI-LEE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHH-HHh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence 88999999999998877664322 222 2478999999999997542211 12235699999999
Q ss_pred CCChHHHHHHHHHHHhh
Q 030149 163 GEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~~ 179 (182)
|.|++++++.+.+.+..
T Consensus 355 g~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 355 GEGIDELREAIKELAFG 371 (449)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999988754
No 157
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=1.1e-25 Score=144.84 Aligned_cols=141 Identities=26% Similarity=0.276 Sum_probs=99.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCeEEEEEEcCCCCCCcc------hhhhcc--CCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP------YWRCYF--PNTQ 86 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~~d 86 (182)
++|+++|.|++|||||+|++.+.+... ...|.......+.+.+..+.++|+||...... ....++ .+.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 589999999999999999999888432 33366677778888999999999999544322 223333 6899
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC----HHHHHHHhccccccCCccEEEEecccC
Q 030149 87 AIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD----DAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
++++|+|+++.+ .......++.+ .+.|+++++||+|+.+... .+.+.+.+ ++|++++||++
T Consensus 81 ~ii~VvDa~~l~---r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L--------g~pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATNLE---RNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERL--------GVPVIPVSART 145 (156)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHH--------TS-EEEEBTTT
T ss_pred EEEEECCCCCHH---HHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHh--------CCCEEEEEeCC
Confidence 999999997753 23333344433 4799999999999754322 23333333 56899999999
Q ss_pred CCChHHHHHHH
Q 030149 163 GEGLFEGLDWL 173 (182)
Q Consensus 163 ~~gi~~l~~~l 173 (182)
++|++++++.+
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999865
No 158
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=3.1e-24 Score=148.08 Aligned_cols=164 Identities=30% Similarity=0.305 Sum_probs=122.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..++|+++|+.|+|||||++++..+.+.. +.+|.+........ ....+.+|||+|+++++..+..++..++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 44899999999999999999999999887 66676644444333 15679999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHH-HHH----------hcc-ccccCCccEEEEe
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAV-TEA----------LEL-HKIKNRQWAIFKT 158 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~-~~~----------~~~-~~~~~~~~~~~~~ 158 (182)
|+|.....++......|...+........|+++++||+|+......... ... ... .........++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 9999996666666655554444444457999999999999765321111 000 000 0001112338999
Q ss_pred ccc--CCCChHHHHHHHHHHHhh
Q 030149 159 SAI--KGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 159 S~~--~~~gi~~l~~~l~~~~~~ 179 (182)
|++ ++.++++++..+...+.+
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHH
Confidence 999 999999999999988854
No 159
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=4e-24 Score=144.80 Aligned_cols=147 Identities=18% Similarity=0.216 Sum_probs=100.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCCcccc-------------cccc----eeEEEEEEcCeEEEEEEcCCCCCCcch
Q 030149 17 EARILVLGLDNAGKTTILYRLQM--GEVVSTI-------------PTIG----FNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~--~~~~~~~-------------~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
..+|+++|++++|||||++++.. +.+.... ++.+ .....+.++...+.+|||||++++...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 35899999999999999999986 3333211 1222 333456668899999999999999999
Q ss_pred hhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH---HHHHHHhccc--cccCCc
Q 030149 78 WRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD---AAVTEALELH--KIKNRQ 152 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~---~~~~~~~~~~--~~~~~~ 152 (182)
+..+++.+|++++|+|+++.. +.....++.... ..+.|+++|+||+|+...... ++..+.+... .....+
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKAL----ELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLD 156 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHH----HcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCc
Confidence 999999999999999997642 222233333322 246899999999999653221 1222222111 112236
Q ss_pred cEEEEecccCCCChHH
Q 030149 153 WAIFKTSAIKGEGLFE 168 (182)
Q Consensus 153 ~~~~~~S~~~~~gi~~ 168 (182)
++++++||++|.|+.+
T Consensus 157 ~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 157 FPVLYASAKNGWASLN 172 (194)
T ss_pred cCEEEeehhccccccc
Confidence 7899999999977633
No 160
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.92 E-value=1.4e-24 Score=146.34 Aligned_cols=157 Identities=22% Similarity=0.224 Sum_probs=112.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCc--c-------------------cccccceeEEEEE--EcCeEEEEEEcCCCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVV--S-------------------TIPTIGFNVETVQ--YNNIKFQVWDLGGQT 72 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~--~-------------------~~~t~~~~~~~~~--~~~~~~~~~D~~g~~ 72 (182)
+.++|+++|+.++|||||+++|+..... . ..-|.......+. .....+.++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 5689999999999999999999743211 0 1225556677777 789999999999999
Q ss_pred CCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcc-----cc
Q 030149 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALEL-----HK 147 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~-----~~ 147 (182)
++.......+..+|++|+|+|+.+.-. ......+... ...+.|+++|+||+|+... ..++..+.... ..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~-~~~~~~l~~~----~~~~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQ-PQTEEHLKIL----RELGIPIIVVLNKMDLIEK-ELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBST-HHHHHHHHHH----HHTT-SEEEEEETCTSSHH-HHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeecccccc-cccccccccc----cccccceEEeeeeccchhh-hHHHHHHHHHHHhccccc
Confidence 988888888999999999999986632 1222223332 2347889999999999832 22222222221 11
Q ss_pred ccC-CccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 148 IKN-RQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 148 ~~~-~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
... ...+++++||.+|.|+++|++.|.+.++
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 111 2578999999999999999999998875
No 161
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.92 E-value=1.8e-24 Score=147.27 Aligned_cols=159 Identities=14% Similarity=0.071 Sum_probs=101.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCc--c----cccccceeEEEEEEc---------------------------C----
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVV--S----TIPTIGFNVETVQYN---------------------------N---- 60 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~--~----~~~t~~~~~~~~~~~---------------------------~---- 60 (182)
++|+++|+.|+|||||++++.+.... . ..-+.........+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 48999999999999999999654211 1 111221111111110 2
Q ss_pred --eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHH
Q 030149 61 --IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA 138 (182)
Q Consensus 61 --~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~ 138 (182)
..+.||||||++.+...+...+..+|++++|+|+.++.........+... ... ...|+++|+||+|+........
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIM--GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHc--CCCcEEEEEEchhccCHHHHHH
Confidence 68999999999988888788888999999999998742111122222222 111 1357999999999975322222
Q ss_pred HHHHhccccc--cCCccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 139 VTEALELHKI--KNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 139 ~~~~~~~~~~--~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
..+.+..... .....+++++||++|+|++++++.+.+.+..
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 2222221111 1235679999999999999999999887653
No 162
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=4.8e-24 Score=159.57 Aligned_cols=158 Identities=24% Similarity=0.276 Sum_probs=111.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCeEEEEEEcCCCCC----Cc---chhhhccCCCCe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTS----IR---PYWRCYFPNTQA 87 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----~~---~~~~~~~~~~d~ 87 (182)
..|+++|.|+||||||+++|.+.+... ..+|...+...+.+.+..+.+||+||..+ .. .....+++.+|+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradv 239 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAV 239 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCE
Confidence 689999999999999999998765432 34466778888888889999999999532 11 122335678999
Q ss_pred EEEEEeCCCc----chHHHHHHHHHHHHhhc----------ccCCCeEEEEeecCCCCCCCCHH-HHHHHhccccccCCc
Q 030149 88 IIYVVDSSDT----ERLVIAKDEFHAILEEE----------ELRGAVVLIFANKQDLPGALDDA-AVTEALELHKIKNRQ 152 (182)
Q Consensus 88 ii~v~d~~~~----~s~~~~~~~~~~~~~~~----------~~~~~~iivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~ 152 (182)
+|+|+|+++. +.++....+...+..+. ....+|+++|+||+|+.+..... .+...+ ...+
T Consensus 240 Lv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l-----~~~g 314 (500)
T PRK12296 240 LVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL-----EARG 314 (500)
T ss_pred EEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----HHcC
Confidence 9999999753 34444433333332221 23478999999999996432221 111111 1235
Q ss_pred cEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 153 WAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 153 ~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
++++++||++++|+++++++|.+.+...
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 7899999999999999999999988764
No 163
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=7.3e-24 Score=160.48 Aligned_cols=152 Identities=22% Similarity=0.241 Sum_probs=106.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccccccc----eeEEEEEEcCeEEEEEEcCCCCC--------CcchhhhccC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG----FNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYFP 83 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 83 (182)
...+|+++|.+|+|||||+|++.+.......++.+ .....+.+.+..+.+|||||.+. +...+..+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 34789999999999999999999876544333333 33444556788899999999763 2233455788
Q ss_pred CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCC
Q 030149 84 NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKG 163 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (182)
.+|++|+|+|+++..+... ..+...+. ..+.|+++|+||+|+..... +..+.... ..+ ..+++||++|
T Consensus 117 ~aD~il~VvD~~~~~s~~~--~~i~~~l~---~~~~piilV~NK~Dl~~~~~--~~~~~~~~----g~~-~~~~iSA~~g 184 (472)
T PRK03003 117 TADAVLFVVDATVGATATD--EAVARVLR---RSGKPVILAANKVDDERGEA--DAAALWSL----GLG-EPHPVSALHG 184 (472)
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHH---HcCCCEEEEEECccCCccch--hhHHHHhc----CCC-CeEEEEcCCC
Confidence 9999999999998765432 22233332 24799999999999864321 11111111 111 2479999999
Q ss_pred CChHHHHHHHHHHHhh
Q 030149 164 EGLFEGLDWLSNTLKS 179 (182)
Q Consensus 164 ~gi~~l~~~l~~~~~~ 179 (182)
.|++++++.+.+.+.+
T Consensus 185 ~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 185 RGVGDLLDAVLAALPE 200 (472)
T ss_pred CCcHHHHHHHHhhccc
Confidence 9999999999988754
No 164
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.92 E-value=8.1e-24 Score=162.46 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=112.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCe-EEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNI-KFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..+..+|+++|++++|||||++++.+..+.. ..+ |.......+.+.+. .+.+|||||++.+..++......+|+++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 3577899999999999999999998877655 222 34444455555444 8999999999999999998899999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccccc----CCccEEEEecccCCCC
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIK----NRQWAIFKTSAIKGEG 165 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~~~g 165 (182)
+|+|+++... ......+. .....+.|+++++||+|+.+. ..+++...+...... ....+++++||++|+|
T Consensus 164 LVVda~dgv~-~qT~e~i~----~~~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 164 LVVAADDGVM-PQTIEAIS----HAKAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEEECCCCCC-HhHHHHHH----HHHHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 9999876431 11112222 222247899999999999653 334444333221111 1235799999999999
Q ss_pred hHHHHHHHHHH
Q 030149 166 LFEGLDWLSNT 176 (182)
Q Consensus 166 i~~l~~~l~~~ 176 (182)
++++++++...
T Consensus 238 I~eLl~~I~~~ 248 (587)
T TIGR00487 238 IDELLDMILLQ 248 (587)
T ss_pred hHHHHHhhhhh
Confidence 99999998653
No 165
>COG1159 Era GTPase [General function prediction only]
Probab=99.92 E-value=1.9e-24 Score=149.41 Aligned_cols=159 Identities=19% Similarity=0.180 Sum_probs=112.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCccccccccee----EEEEEEcCeEEEEEEcCCCCCCcc--------hhhhc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN----VETVQYNNIKFQVWDLGGQTSIRP--------YWRCY 81 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~ 81 (182)
..+.-.|+++|.|++|||||+|++.+.+....++-...+ ..-+..++..+.|+||||...-.. .....
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 356778999999999999999999999987755533333 223333789999999999544322 33455
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEeccc
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
+.++|++++|+|+.++.. ....++...+.. .+.|+++++||+|...+... +...............++++||+
T Consensus 83 l~dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~--l~~~~~~~~~~~~f~~ivpiSA~ 155 (298)
T COG1159 83 LKDVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKVKPKTV--LLKLIAFLKKLLPFKEIVPISAL 155 (298)
T ss_pred hccCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccCCcHHH--HHHHHHHHHhhCCcceEEEeecc
Confidence 789999999999987533 222333333332 46899999999998766441 12222222223334469999999
Q ss_pred CCCChHHHHHHHHHHHhh
Q 030149 162 KGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~~~ 179 (182)
+|.|++.|.+.+...+++
T Consensus 156 ~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 156 KGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred ccCCHHHHHHHHHHhCCC
Confidence 999999999999988764
No 166
>PRK00089 era GTPase Era; Reviewed
Probab=99.92 E-value=1.4e-23 Score=150.58 Aligned_cols=157 Identities=20% Similarity=0.196 Sum_probs=106.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccc---eeEEE-EEEcCeEEEEEEcCCCCCCcc--------hhhhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG---FNVET-VQYNNIKFQVWDLGGQTSIRP--------YWRCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~---~~~~~-~~~~~~~~~~~D~~g~~~~~~--------~~~~~~ 82 (182)
.+.-.|+++|++|||||||+|++++.+.....+... ..... ...++..+.++||||...... .....+
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 456789999999999999999999887654333222 21211 222557999999999754332 233457
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC-CCHHHHHHHhccccccCCccEEEEeccc
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA-LDDAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
..+|++++|+|+++.. .....++...+. ..+.|+++|+||+|+... .......+.+.. .....+++++||+
T Consensus 83 ~~~D~il~vvd~~~~~--~~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~---~~~~~~i~~iSA~ 154 (292)
T PRK00089 83 KDVDLVLFVVDADEKI--GPGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSE---LMDFAEIVPISAL 154 (292)
T ss_pred hcCCEEEEEEeCCCCC--ChhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHh---hCCCCeEEEecCC
Confidence 8899999999998732 222233333332 246899999999999732 222222222221 2234569999999
Q ss_pred CCCChHHHHHHHHHHHhh
Q 030149 162 KGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~~~ 179 (182)
++.|++++++.+.+.+..
T Consensus 155 ~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 155 KGDNVDELLDVIAKYLPE 172 (292)
T ss_pred CCCCHHHHHHHHHHhCCC
Confidence 999999999999988753
No 167
>PTZ00099 rab6; Provisional
Probab=99.92 E-value=3.5e-24 Score=142.47 Aligned_cols=130 Identities=20% Similarity=0.316 Sum_probs=103.2
Q ss_pred cccccceeEEE--EEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe
Q 030149 45 TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120 (182)
Q Consensus 45 ~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ 120 (182)
+.||++..... +.. ....+.+|||||++.+..++..+++++|++|+|+|++++++|+.+..|+..+..... .+.|
T Consensus 9 ~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~-~~~p 87 (176)
T PTZ00099 9 YQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDVI 87 (176)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCe
Confidence 77888865543 333 457899999999999999999999999999999999999999999999888876532 5789
Q ss_pred EEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 121 VLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 121 iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
+++|+||+|+.+. ...++.... ....++.++++||++|+|++++|++|.+.+.+.
T Consensus 88 iilVgNK~DL~~~~~v~~~e~~~~-----~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 88 IALVGNKTDLGDLRKVTYEEGMQK-----AQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred EEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999642 222222221 123355799999999999999999999988764
No 168
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.92 E-value=2.2e-23 Score=155.79 Aligned_cols=150 Identities=17% Similarity=0.155 Sum_probs=110.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCc--cccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcch--------hhhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 82 (182)
...++|+++|++|+|||||+|++.+.... ...| |.......+.+++..+.+|||||..+.... ...++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 46689999999999999999999987543 2223 333445566778899999999998665432 23567
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
+.+|++++|+|++++.+++.. |+.... ..+.|+++|+||+|+... +.+.+. ...+.+++++|+++
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~----~~~~piIlV~NK~Dl~~~-~~~~~~--------~~~~~~~~~vSak~ 345 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDLN----KSKKPFILVLNKIDLKIN-SLEFFV--------SSKVLNSSNLSAKQ 345 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHHh----hCCCCEEEEEECccCCCc-chhhhh--------hhcCCceEEEEEec
Confidence 899999999999988776654 444432 246899999999999643 211111 12234689999998
Q ss_pred CCChHHHHHHHHHHHhhc
Q 030149 163 GEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~~~ 180 (182)
.|++++++.+.+.+.+.
T Consensus 346 -~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 346 -LKIKALVDLLTQKINAF 362 (442)
T ss_pred -CCHHHHHHHHHHHHHHH
Confidence 69999999998887653
No 169
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=3.1e-23 Score=153.37 Aligned_cols=155 Identities=23% Similarity=0.254 Sum_probs=110.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCc--c-cccccceeEEEEEEc-CeEEEEEEcCCCCC----Ccch---hhhccCCCCe
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVV--S-TIPTIGFNVETVQYN-NIKFQVWDLGGQTS----IRPY---WRCYFPNTQA 87 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~--~-~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~----~~~~---~~~~~~~~d~ 87 (182)
.|+++|.|+||||||++++++.+.. . ...|...+...+.+. +..+.+||+||..+ ...+ ...+++.+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 8999999999999999999976632 2 234666667777776 78999999999632 1122 2334667999
Q ss_pred EEEEEeCCCc---chHHHHHHHHHHHHhhc-ccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCC
Q 030149 88 IIYVVDSSDT---ERLVIAKDEFHAILEEE-ELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKG 163 (182)
Q Consensus 88 ii~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (182)
+++|+|+++. ++++....+...+..+. ...++|+++|+||+|+... .+.... +... ...+++++||+++
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~-l~~~----l~~~i~~iSA~tg 312 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEE-FKEK----LGPKVFPISALTG 312 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHH-HHHH----hCCcEEEEeCCCC
Confidence 9999999764 56666655555554332 1247899999999998432 222221 2111 1156999999999
Q ss_pred CChHHHHHHHHHHHhhc
Q 030149 164 EGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 164 ~gi~~l~~~l~~~~~~~ 180 (182)
+|++++++++.+.+.+.
T Consensus 313 eGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 313 QGLDELLYAVAELLEET 329 (424)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999888654
No 170
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=1e-23 Score=138.09 Aligned_cols=144 Identities=22% Similarity=0.235 Sum_probs=101.1
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcc--------hhhhccCCCCeE
Q 030149 21 LVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCYFPNTQAI 88 (182)
Q Consensus 21 ~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~d~i 88 (182)
+++|.+|+|||||++++.+..... ..+ |...........+..+.+|||||...... .+...++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 479999999999999999875322 222 33344555666789999999999887544 334567889999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCcc-EEEEecccCCCChH
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQW-AIFKTSAIKGEGLF 167 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~gi~ 167 (182)
++|+|+.+..+... .++...+.. .+.|+++|+||+|+...... ...... .+. +++++|+++|.|++
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~-----~~~~~~~~~Sa~~~~gv~ 147 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYS-----LGFGEPIPISAEHGRGIG 147 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHh-----cCCCCeEEEecccCCCHH
Confidence 99999976544332 222233322 36999999999999754222 111111 122 58999999999999
Q ss_pred HHHHHHHHHH
Q 030149 168 EGLDWLSNTL 177 (182)
Q Consensus 168 ~l~~~l~~~~ 177 (182)
++++++.+.+
T Consensus 148 ~l~~~l~~~~ 157 (157)
T cd01894 148 DLLDAILELL 157 (157)
T ss_pred HHHHHHHhhC
Confidence 9999998763
No 171
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=2.1e-23 Score=157.15 Aligned_cols=160 Identities=18% Similarity=0.143 Sum_probs=112.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccc----ccceeEEEEEEcCeEEEEEEcCCCCCCcch-----------hh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYNNIKFQVWDLGGQTSIRPY-----------WR 79 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~~ 79 (182)
...++|+++|.+|+|||||++++++.......+ |.......+...+..+.+|||||....... ..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 356999999999999999999999876433222 222333344567889999999996432211 12
Q ss_pred hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEec
Q 030149 80 CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+++.+|++|+|+|+.++.+.... ..+..+. ..++|+++++||+|+.++...+++.+.+..........+++++|
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~----~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDL-RIAGLAL----EAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHH----HcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 357889999999999887654433 2222222 24689999999999974433344444444333334567899999
Q ss_pred ccCCCChHHHHHHHHHHHhh
Q 030149 160 AIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~~ 179 (182)
|++|.|++++++.+.+...+
T Consensus 326 A~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999998876653
No 172
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.92 E-value=2.7e-23 Score=137.28 Aligned_cols=154 Identities=23% Similarity=0.224 Sum_probs=104.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCccccc---c-cceeEEEEEEcCeEEEEEEcCCCCCCcc--------hhhhccC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIP---T-IGFNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCYFP 83 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~---t-~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~ 83 (182)
...+|+++|++|+|||||++++.+.......+ + ...........+..+.+|||||...... .....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999876543222 1 1122222333568899999999765432 2334578
Q ss_pred CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC-CCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 84 NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG-ALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
.+|++++|+|+.++.+ ....++...+.. .+.|+++++||+|+.. .....+....+.. .....+++++|+++
T Consensus 82 ~~d~i~~v~d~~~~~~--~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~ 153 (168)
T cd04163 82 DVDLVLFVVDASEPIG--EGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKE---LGPFAEIFPISALK 153 (168)
T ss_pred hCCEEEEEEECCCccC--chHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHh---ccCCCceEEEEecc
Confidence 8999999999988722 222333333222 2689999999999973 2222333333322 23345799999999
Q ss_pred CCChHHHHHHHHHHH
Q 030149 163 GEGLFEGLDWLSNTL 177 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~ 177 (182)
+.|++++++.|.+.+
T Consensus 154 ~~~~~~l~~~l~~~~ 168 (168)
T cd04163 154 GENVDELLEEIVKYL 168 (168)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999997753
No 173
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.92 E-value=1.9e-23 Score=142.04 Aligned_cols=157 Identities=28% Similarity=0.361 Sum_probs=115.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCC-CeEEEEEe
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNT-QAIIYVVD 93 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~-d~ii~v~d 93 (182)
+|+++|++|||||||++++..+.+....++...+...... .+..+.+||+||+..++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999988776654444444333333 367899999999999998888889998 99999999
Q ss_pred CCCc-chHHHHHHHHHHHHhhcc--cCCCeEEEEeecCCCCCCCCHHHHHHHhcc-------------------------
Q 030149 94 SSDT-ERLVIAKDEFHAILEEEE--LRGAVVLIFANKQDLPGALDDAAVTEALEL------------------------- 145 (182)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~------------------------- 145 (182)
+.+. .++.....++..++.... .+..|+++++||+|+......+.+.+.+..
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9887 677777777766654322 257999999999998654333222222110
Q ss_pred ----------ccccCCccEEEEecccCCC-ChHHHHHHHHH
Q 030149 146 ----------HKIKNRQWAIFKTSAIKGE-GLFEGLDWLSN 175 (182)
Q Consensus 146 ----------~~~~~~~~~~~~~S~~~~~-gi~~l~~~l~~ 175 (182)
.......+.+.++|++.+. |++.+.+|+.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0001135669999998877 69999988864
No 174
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.92 E-value=6.6e-24 Score=138.99 Aligned_cols=142 Identities=25% Similarity=0.266 Sum_probs=95.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcc----hhhhccCCCCeEEEEEeC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP----YWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----~~~~~~~~~d~ii~v~d~ 94 (182)
+|+++|++|+|||||++++.+... ...++.+ +.+... .+|||||...... .....++.+|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~~~~~~~-----v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-LARKTQA-----VEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-cCccceE-----EEECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 799999999999999999876542 1122222 222222 2699999743222 223347899999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
++.+++. ..++..+ ..+.|+++++||+|+... ..+...+..... ....|++++||++|+|++++++.+.
T Consensus 75 ~~~~s~~--~~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~---~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 75 NDPESRL--PAGLLDI-----GVSKRQIAVISKTDMPDA-DVAATRKLLLET---GFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred CCccccc--CHHHHhc-----cCCCCeEEEEEccccCcc-cHHHHHHHHHHc---CCCCCEEEEECCCccCHHHHHHHHH
Confidence 9887652 2333332 136789999999998643 333333333221 1125799999999999999999999
Q ss_pred HHHhh
Q 030149 175 NTLKS 179 (182)
Q Consensus 175 ~~~~~ 179 (182)
+.+.+
T Consensus 144 ~~~~~ 148 (158)
T PRK15467 144 SLTKQ 148 (158)
T ss_pred Hhchh
Confidence 88754
No 175
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.92 E-value=1.4e-23 Score=142.39 Aligned_cols=162 Identities=20% Similarity=0.154 Sum_probs=105.7
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCC-cccccccceeEEEEEE-cCeEEEEEEcCCCCC----------Ccchhh
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEV-VSTIPTIGFNVETVQY-NNIKFQVWDLGGQTS----------IRPYWR 79 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~----------~~~~~~ 79 (182)
.+....++|+++|++|+|||||++++.+.++ ..+.++.+.+.....+ .+..+.+|||||... +.....
T Consensus 19 ~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 19 LPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 3446779999999999999999999998764 3455555533222111 247899999999532 222233
Q ss_pred hccC---CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEE
Q 030149 80 CYFP---NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIF 156 (182)
Q Consensus 80 ~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
.+++ ..+++++++|...+.+... .++...+. ..+.|+++++||+|+.+....+.......... .....+++
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l-~~~~~~~~ 172 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKAL-KFGDDEVI 172 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHH-HhcCCceE
Confidence 3343 3467888999876543322 22223322 24688999999999975433333332222211 11145799
Q ss_pred EecccCCCChHHHHHHHHHHHhh
Q 030149 157 KTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 157 ~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
++||++|+|++++++.+.+.+..
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999887753
No 176
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.91 E-value=1.8e-23 Score=164.09 Aligned_cols=157 Identities=20% Similarity=0.226 Sum_probs=113.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+..+|+++|+.++|||||+++|.+..+.. ..+ |.......+.+.+..+.||||||++.|..++......+|++|+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 4688999999999999999999998766544 211 3334445566678899999999999999999988999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccc--c--CCccEEEEecccCCCCh
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKI--K--NRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~S~~~~~gi 166 (182)
|+|+++... ......+. .....+.|+++++||+|+... +.+.+...+..... . ...++++++||++|.|+
T Consensus 367 VVdAddGv~-~qT~e~i~----~a~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 367 VVAADDGVM-PQTIEAIN----HAKAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEECCCCCC-HhHHHHHH----HHHhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 999987421 11112222 222357899999999999653 33334333222111 1 12468999999999999
Q ss_pred HHHHHHHHHH
Q 030149 167 FEGLDWLSNT 176 (182)
Q Consensus 167 ~~l~~~l~~~ 176 (182)
+++++.|...
T Consensus 441 ~eLle~I~~~ 450 (787)
T PRK05306 441 DELLEAILLQ 450 (787)
T ss_pred hHHHHhhhhh
Confidence 9999998754
No 177
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.91 E-value=7.5e-26 Score=144.38 Aligned_cols=161 Identities=17% Similarity=0.292 Sum_probs=132.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE----EEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE----TVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...++++|+|..++||||++++++.+-|.. +..|++...- .+...+.+..+||++|++++..+...|++++.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 467999999999999999999999998887 7777774432 33446788999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+||+.++..||+....|...+.... ...|.++|-||+|+.+.... .....+-.++..++.++.+|++...|+.++
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~---~~~evE~lak~l~~RlyRtSvked~NV~~v 172 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQM---DKGEVEGLAKKLHKRLYRTSVKEDFNVMHV 172 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhc---chHHHHHHHHHhhhhhhhhhhhhhhhhHHH
Confidence 9999999999999999999986654 47999999999999864221 111112222344566999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
|.+|.+.+.++
T Consensus 173 F~YLaeK~~q~ 183 (246)
T KOG4252|consen 173 FAYLAEKLTQQ 183 (246)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 178
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.91 E-value=3.8e-23 Score=135.50 Aligned_cols=150 Identities=24% Similarity=0.188 Sum_probs=107.0
Q ss_pred EEcCCCCCHHHHHHHHhcCCCccccc----ccceeEEEEEEc-CeEEEEEEcCCCCCCcc-------hhhhccCCCCeEE
Q 030149 22 VLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYN-NIKFQVWDLGGQTSIRP-------YWRCYFPNTQAII 89 (182)
Q Consensus 22 v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~-------~~~~~~~~~d~ii 89 (182)
++|++|+|||||++++.+.......+ +........... ...+.+||+||...... .....++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999999776553211 333333344443 78999999999776543 3344678999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+|+.++.+..... +... ....+.|+++|+||+|+..+....................+++++|+.++.|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~----~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLEL----LRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHH----HHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999887655544 2222 22357999999999999865444443322233334556778999999999999999
Q ss_pred HHHHHHH
Q 030149 170 LDWLSNT 176 (182)
Q Consensus 170 ~~~l~~~ 176 (182)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998875
No 179
>PRK11058 GTPase HflX; Provisional
Probab=99.91 E-value=6.9e-23 Score=152.33 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=107.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCe-EEEEEEcCCCCCC--cch------hhhccCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNI-KFQVWDLGGQTSI--RPY------WRCYFPNT 85 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~~--~~~------~~~~~~~~ 85 (182)
++|+++|.+|+|||||+|++.+.+... ...|.+.....+.+.+. .+.+|||||.... ... +...++.+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 689999999999999999999876432 34466666666666554 8899999997331 111 22346889
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccE-EEEecccCCC
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWA-IFKTSAIKGE 164 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~ 164 (182)
|++++|+|++++.++.....+ ..++......+.|+++|+||+|+..... ...... ..+.+ ++++||++|+
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v-~~iL~el~~~~~pvIiV~NKiDL~~~~~-~~~~~~-------~~~~~~~v~ISAktG~ 348 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAV-NTVLEEIDAHEIPTLLVMNKIDMLDDFE-PRIDRD-------EENKPIRVWLSAQTGA 348 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHH-HHHHHHhccCCCCEEEEEEcccCCCchh-HHHHHH-------hcCCCceEEEeCCCCC
Confidence 999999999998776655332 2233333335789999999999964311 111111 01222 5889999999
Q ss_pred ChHHHHHHHHHHHhh
Q 030149 165 GLFEGLDWLSNTLKS 179 (182)
Q Consensus 165 gi~~l~~~l~~~~~~ 179 (182)
|++++++.+.+.+..
T Consensus 349 GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 349 GIPLLFQALTERLSG 363 (426)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999988753
No 180
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.91 E-value=9.5e-24 Score=141.25 Aligned_cols=151 Identities=21% Similarity=0.182 Sum_probs=95.4
Q ss_pred hhcCCcccEEEEEcCCCCCHHHHHHHHhcCCC-cccccccceeEE--EEEEcCeEEEEEEcCCCCC----------Ccch
Q 030149 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEV-VSTIPTIGFNVE--TVQYNNIKFQVWDLGGQTS----------IRPY 77 (182)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~-~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~----------~~~~ 77 (182)
..++.+.++|+++|++|+|||||++++.+..+ ..+.++.+.+.. .+..+ ..+.+|||||... +..+
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHH
Confidence 34558889999999999999999999998763 334445443322 22223 4799999999532 1222
Q ss_pred hhhccC---CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccccc-CCcc
Q 030149 78 WRCYFP---NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIK-NRQW 153 (182)
Q Consensus 78 ~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~ 153 (182)
...+++ .++++++|+|++++-+.... .+...+. ..+.|+++++||+|+..+...+...+........ ...+
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~---~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLR---ERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP 165 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHH---HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence 223343 46899999999875443332 2222222 2478999999999997543222222222211111 2245
Q ss_pred EEEEecccCCCChH
Q 030149 154 AIFKTSAIKGEGLF 167 (182)
Q Consensus 154 ~~~~~S~~~~~gi~ 167 (182)
+++++||++|+|++
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 79999999999974
No 181
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.91 E-value=7.4e-23 Score=161.55 Aligned_cols=159 Identities=16% Similarity=0.135 Sum_probs=112.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCc--cccc--ccceeEEEEEEcCeEEEEEEcCCCCCC----------cch-hhh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTSI----------RPY-WRC 80 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~-~~~ 80 (182)
..++|+++|.+|+|||||+|++.+.+.. ...+ |.+.....+.+++..+.+|||||..+- ..+ ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 4589999999999999999999988743 2222 334444556678888999999995421 111 123
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
+++.+|++++|+|+++..+..... ++..+.. .++|+++|+||+|+.+....+.+..............+++++||
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 468899999999999887766543 3333322 47899999999999754333333333322222234456899999
Q ss_pred cCCCChHHHHHHHHHHHhh
Q 030149 161 IKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~ 179 (182)
++|.|++++++.+.+.+.+
T Consensus 604 ktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988765
No 182
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.90 E-value=3.8e-23 Score=159.31 Aligned_cols=158 Identities=22% Similarity=0.167 Sum_probs=110.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC---Ccc-c--ccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE---VVS-T--IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~---~~~-~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
++|+++|++++|||||++++.+.. +.. + ..|.......+...+..+.+||+||++.+...+...+.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 479999999999999999998643 211 2 2244455555667779999999999999888888889999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCCCCHHHHHHHhccc---cccCCccEEEEecccCCCChH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPGALDDAAVTEALELH---KIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+++... ......+. ++.. .+.| +++|+||+|+.+....+...+..... .....+.+++++||++|+|++
T Consensus 81 VDa~~G~~-~qT~ehl~-il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~ 155 (581)
T TIGR00475 81 VDADEGVM-TQTGEHLA-VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG 155 (581)
T ss_pred EECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence 99987421 11112221 2222 3566 99999999997543222222222111 111125789999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++++.+.+.+...
T Consensus 156 eL~~~L~~l~~~~ 168 (581)
T TIGR00475 156 ELKKELKNLLESL 168 (581)
T ss_pred hHHHHHHHHHHhC
Confidence 9999998877653
No 183
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.90 E-value=6.3e-23 Score=159.87 Aligned_cols=157 Identities=18% Similarity=0.219 Sum_probs=111.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cc--ccc--ceeEEEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TI--PTI--GFNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~--~t~--~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
.+..+|+++|++++|||||++++....+.. .. .|. +.....+.. .+..+.||||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 577899999999999999999998776654 11 232 222223333 35899999999999999999989999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccc--c--CCccEEEEecccCC
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKI--K--NRQWAIFKTSAIKG 163 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~S~~~~ 163 (182)
+|+|+|+++..... ....+..+ ...+.|+++++||+|+... ..+++...+..... . ...++++++||++|
T Consensus 322 aILVVDA~dGv~~Q-T~E~I~~~----k~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 322 AILIIAADDGVKPQ-TIEAINYI----QAANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEEECcCCCChh-hHHHHHHH----HhcCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 99999997743211 11222222 2357899999999999753 23333333322111 1 12468999999999
Q ss_pred CChHHHHHHHHHHH
Q 030149 164 EGLFEGLDWLSNTL 177 (182)
Q Consensus 164 ~gi~~l~~~l~~~~ 177 (182)
.|++++++.+....
T Consensus 396 ~GIdeLle~I~~l~ 409 (742)
T CHL00189 396 TNIDKLLETILLLA 409 (742)
T ss_pred CCHHHHHHhhhhhh
Confidence 99999999987754
No 184
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=1.9e-22 Score=148.44 Aligned_cols=160 Identities=19% Similarity=0.168 Sum_probs=110.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcC-eEEEEEEcCCCCCC-------cchhhhccCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQTSI-------RPYWRCYFPNTQ 86 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~~~~~~~~~d 86 (182)
..|+++|.|+||||||+|++.+.+... ...|.......+.+.+ ..+.++||||..+- ......+++.+|
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 379999999999999999998765421 2335566677777764 57999999996432 112234578899
Q ss_pred eEEEEEeCC---CcchHHHHHHHHHHHHhhc-ccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 87 AIIYVVDSS---DTERLVIAKDEFHAILEEE-ELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 87 ~ii~v~d~~---~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
++++|+|++ +.+.++....+...+.... ...++|+++|+||+|+.......+....+... .....+++++||++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~t 317 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAAS 317 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECCC
Confidence 999999987 4456666666655554431 12468999999999986442222222222111 11123589999999
Q ss_pred CCChHHHHHHHHHHHhh
Q 030149 163 GEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~~ 179 (182)
+.|++++++.|.+.+.+
T Consensus 318 g~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 318 GLGVKELCWDLMTFIEE 334 (390)
T ss_pred CcCHHHHHHHHHHHhhh
Confidence 99999999999998865
No 185
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.90 E-value=2e-22 Score=155.50 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=110.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC-------Ccc-ccc----------ccceeEEEEEEc-----CeEEEEEEcCCCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE-------VVS-TIP----------TIGFNVETVQYN-----NIKFQVWDLGGQT 72 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~-------~~~-~~~----------t~~~~~~~~~~~-----~~~~~~~D~~g~~ 72 (182)
+..|++++|+.++|||||+++++... +.. +.+ |.......+.+. .+.+++|||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 35689999999999999999997642 111 211 222222334332 2789999999999
Q ss_pred CCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCc
Q 030149 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQ 152 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 152 (182)
++...+..+++.+|++|+|+|+++..+......|+... . .+.|+++|+||+|+.... .+...+.+... .....
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~-~~~~~~el~~~-lg~~~ 154 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSAD-PERVKKEIEEV-IGLDA 154 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccC-HHHHHHHHHHH-hCCCc
Confidence 99999999999999999999998876655544443322 2 368999999999986432 23222222211 11112
Q ss_pred cEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 153 WAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 153 ~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
..++++||++|.|++++++.|.+.+..
T Consensus 155 ~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 155 SEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred ceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 248999999999999999999987753
No 186
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.90 E-value=1.5e-22 Score=151.81 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=103.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCc----------------------------------ccccccceeEEEEEEc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV----------------------------------STIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~----------------------------------~~~~t~~~~~~~~~~~ 59 (182)
..+.++|+++|++++|||||+++|+...-. ...-|.......+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 356799999999999999999999732210 0122555556667778
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH---
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD--- 136 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~--- 136 (182)
+..+.+|||||++++.......+..+|++++|+|++++.+......+...+.... ...|+++++||+|+.+....
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 8999999999998887666666788999999999986322222222222222222 12479999999999752111
Q ss_pred ---HHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 137 ---AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 137 ---~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
+++.+.+.........++++++||++|+|++++.
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 1222222222222234689999999999998744
No 187
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=3.9e-23 Score=129.48 Aligned_cols=111 Identities=28% Similarity=0.416 Sum_probs=79.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc---ccccc--ce--eEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIPTI--GF--NVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~--~~--~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
||+|+|++|||||||++++.+..+.. ..++. .. ...........+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999888761 22222 22 2222223445699999999988887777778899999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhc-ccCCCeEEEEeecCC
Q 030149 92 VDSSDTERLVIAKDEFHAILEEE-ELRGAVVLIFANKQD 129 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D 129 (182)
+|.++++++..+..++..+.... ...+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999988755433222221 134699999999998
No 188
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.89 E-value=7.3e-22 Score=143.71 Aligned_cols=159 Identities=18% Similarity=0.125 Sum_probs=117.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCccccc----ccceeEEEEEEcCeEEEEEEcCCCCCCcc-----------hhhh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYNNIKFQVWDLGGQTSIRP-----------YWRC 80 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~~ 80 (182)
..++|+++|.|++|||||+|++++.+-....+ |.+.-...+++++..+.++||+|...-.. -...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 46999999999999999999999988665444 44455556667899999999999432111 1234
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEe
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
.+..+|++++|+|++.+-+- ....+.......+.++++++||+|+.+. ...++..+.+..........+++.+
T Consensus 257 aI~~a~vvllviDa~~~~~~-----qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 257 AIERADVVLLVIDATEGISE-----QDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HHhhcCEEEEEEECCCCchH-----HHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 46789999999999887432 2223333333468999999999999875 3445555555554445567789999
Q ss_pred cccCCCChHHHHHHHHHHHhh
Q 030149 159 SAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~~~~ 179 (182)
||++|.|++++++.+......
T Consensus 332 SA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred EecCCCChHHHHHHHHHHHHH
Confidence 999999999999998877654
No 189
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.89 E-value=7.6e-22 Score=143.97 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=115.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc----cccccceeEEEEEEcCeEEEEEEcCCCCCCcchh--------hhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW--------RCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 82 (182)
+.-++++++|.|++|||||+|+|++.+... ...|.++-...+..+++++.++||+|..+..... ...+
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 466999999999999999999999988655 3336667788888999999999999976554432 3457
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
+.+|.+++|+|++.+.+-.... +.. ....++|+++|.||.|+..+...... ....+.+++.+|+++
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~-----~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~--------~~~~~~~~i~iSa~t 360 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLA-----LIE-LLPKKKPIIVVLNKADLVSKIELESE--------KLANGDAIISISAKT 360 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHH-----HHH-hcccCCCEEEEEechhcccccccchh--------hccCCCceEEEEecC
Confidence 8899999999998863222221 111 23357999999999999876543322 112334699999999
Q ss_pred CCChHHHHHHHHHHHhhc
Q 030149 163 GEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~~~ 180 (182)
|+|+++|.+.|...+...
T Consensus 361 ~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 361 GEGLDALREAIKQLFGKG 378 (454)
T ss_pred ccCHHHHHHHHHHHHhhc
Confidence 999999999999887654
No 190
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=3.3e-22 Score=150.52 Aligned_cols=149 Identities=23% Similarity=0.223 Sum_probs=105.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCccccc----ccceeEEEEEEcCeEEEEEEcCCCCC--------CcchhhhccCCCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYFPNTQ 86 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~~d 86 (182)
+|+++|.+|+|||||+|++.+.......+ |.......+.+.+..+.+|||||... +......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 58999999999999999999877543222 44455666777889999999999632 3344556788999
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 87 AIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
++++|+|+.+..+... ..+...+.. .++|+++|+||+|+...... ..+ +. .....+++++||.+|.|+
T Consensus 81 ~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVvNK~D~~~~~~~--~~~-~~----~lg~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 81 VILFVVDGREGLTPED--EEIAKWLRK---SGKPVILVANKIDGKKEDAV--AAE-FY----SLGFGEPIPISAEHGRGI 148 (429)
T ss_pred EEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEEECccCCccccc--HHH-HH----hcCCCCeEEEeCCcCCCh
Confidence 9999999977543222 223333332 47899999999998654321 111 11 111124899999999999
Q ss_pred HHHHHHHHHHHhh
Q 030149 167 FEGLDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (182)
+++++.+.+.+..
T Consensus 149 ~~ll~~i~~~l~~ 161 (429)
T TIGR03594 149 GDLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999988743
No 191
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=7.9e-22 Score=148.67 Aligned_cols=146 Identities=24% Similarity=0.284 Sum_probs=103.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEEcCeEEEEEEcCCCCC--------CcchhhhccCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYFPNT 85 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~~ 85 (182)
++|+++|.+|+|||||++++.+..... ..+ |.......+.+.+..+.+|||||... +......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 579999999999999999999877533 222 44455666777889999999999876 223345567899
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCcc-EEEEecccCCC
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQW-AIFKTSAIKGE 164 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 164 (182)
|++++|+|+.++.+... .++...+.. .+.|+++|+||+|+.+. .....+... .++ .++++||++|.
T Consensus 82 d~il~vvd~~~~~~~~~--~~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~------lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 82 DVILFVVDGRAGLTPAD--EEIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYS------LGLGEPYPISAEHGR 148 (435)
T ss_pred CEEEEEEECCCCCCHHH--HHHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHh------cCCCCCEEEEeeCCC
Confidence 99999999987543322 222233332 37899999999997542 122222111 122 27999999999
Q ss_pred ChHHHHHHHHHH
Q 030149 165 GLFEGLDWLSNT 176 (182)
Q Consensus 165 gi~~l~~~l~~~ 176 (182)
|++++++.+...
T Consensus 149 gv~~l~~~I~~~ 160 (435)
T PRK00093 149 GIGDLLDAILEE 160 (435)
T ss_pred CHHHHHHHHHhh
Confidence 999999999873
No 192
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.89 E-value=9.4e-22 Score=155.34 Aligned_cols=153 Identities=22% Similarity=0.278 Sum_probs=105.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEE----EEEEcCeEEEEEEcCCCCC--------Ccchhhhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE----TVQYNNIKFQVWDLGGQTS--------IRPYWRCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 82 (182)
....+|+++|.+++|||||+|++++.......++.+.+.. ...+++..+.+|||||.+. +......++
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 3457899999999999999999998775444444443333 3445678999999999763 223334567
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
+.+|++|+|+|+.+.- ......+...+.. .++|+++|+||+|+.... ....+.... ..+ ..+++||++
T Consensus 353 ~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~--~~~~~~~~l----g~~-~~~~iSA~~ 420 (712)
T PRK09518 353 SLADAVVFVVDGQVGL--TSTDERIVRMLRR---AGKPVVLAVNKIDDQASE--YDAAEFWKL----GLG-EPYPISAMH 420 (712)
T ss_pred HhCCEEEEEEECCCCC--CHHHHHHHHHHHh---cCCCEEEEEECcccccch--hhHHHHHHc----CCC-CeEEEECCC
Confidence 8999999999997642 2222333333332 579999999999986431 111111111 111 257999999
Q ss_pred CCChHHHHHHHHHHHhh
Q 030149 163 GEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~~ 179 (182)
|.|++++++.+.+.+..
T Consensus 421 g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 421 GRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCchHHHHHHHHhccc
Confidence 99999999999988754
No 193
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.89 E-value=1.2e-21 Score=151.26 Aligned_cols=158 Identities=20% Similarity=0.171 Sum_probs=109.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC--Cc------cc----------ccccceeEEEEEEc-----CeEEEEEEcCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE--VV------ST----------IPTIGFNVETVQYN-----NIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~--~~------~~----------~~t~~~~~~~~~~~-----~~~~~~~D~~g~ 71 (182)
.+..|++++|+.++|||||+.+++... +. .+ .-|+......+.+. ++.+++|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 456799999999999999999997532 11 01 11222333344442 678999999999
Q ss_pred CCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCC
Q 030149 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNR 151 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 151 (182)
.++...+..+++.+|++|+|+|+++.........|.. ... .+.|+++|+||+|+.... .+...+.+... ....
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~-~~~----~~lpiIvViNKiDl~~a~-~~~v~~ei~~~-lg~~ 157 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL-ALE----NDLEIIPVLNKIDLPAAD-PERVKQEIEDV-IGID 157 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEEEECCCCCccc-HHHHHHHHHHH-hCCC
Confidence 9999999999999999999999988654443333322 221 368999999999986532 22222222211 1112
Q ss_pred ccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 152 QWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 152 ~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
...++++||++|.|++++++.|.+.++.
T Consensus 158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 158 ASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 2348999999999999999999887753
No 194
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.88 E-value=4.9e-22 Score=149.05 Aligned_cols=155 Identities=15% Similarity=0.112 Sum_probs=102.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC--CCcc--------------------------------cccccceeEEEEEEc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMG--EVVS--------------------------------TIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~--~~~~--------------------------------~~~t~~~~~~~~~~~ 59 (182)
..+.++|+++|+.++|||||+++|+.. .... ...|.+.....+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 356799999999999999999999742 1110 112344445556667
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCCCH--
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGALDD-- 136 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-- 136 (182)
+..+.+|||||++++.......+..+|++++|+|+++.++..... .+...+.... ...|+++++||+|+.+....
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence 899999999999888766666778999999999998875321111 1111222221 23589999999999742221
Q ss_pred ----HHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 137 ----AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 137 ----~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
+++.+.+.........++++++||++|.|+++++
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 1222222222222235789999999999998633
No 195
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.88 E-value=3.1e-21 Score=124.23 Aligned_cols=157 Identities=27% Similarity=0.338 Sum_probs=125.6
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc----------cc---cccceeEEEEEEcC-eEEEEEEcCCCCCCcch
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS----------TI---PTIGFNVETVQYNN-IKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~----------~~---~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~ 77 (182)
.......+|+|.|+.++||||++++++...... .. .|....+....+.+ ..+.+++||||++|..+
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFM 84 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHH
Confidence 345778999999999999999999998766321 11 24445566666644 99999999999999999
Q ss_pred hhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCC-CeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEE
Q 030149 78 WRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRG-AVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIF 156 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
|..+.+.++++|+++|.+++..+ .. ..+..++.. .+ .|+++++||.|+.....++.+.+.+.... ...+++
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~---~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi 156 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTS---RNPIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVI 156 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HH-HHHHHHHhh---ccCCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCcee
Confidence 99999999999999999999877 22 233333333 33 99999999999998888888888887543 467799
Q ss_pred EecccCCCChHHHHHHHHHH
Q 030149 157 KTSAIKGEGLFEGLDWLSNT 176 (182)
Q Consensus 157 ~~S~~~~~gi~~l~~~l~~~ 176 (182)
+.++.++++..+.++.+...
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 99999999999998888765
No 196
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.88 E-value=4.3e-21 Score=132.95 Aligned_cols=151 Identities=25% Similarity=0.231 Sum_probs=103.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCeEEEEEEcCCCCCCc-------chhhhccCCCCeE
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR-------PYWRCYFPNTQAI 88 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~i 88 (182)
+|+++|.+|+|||||++++.+..... ..+|.......+.+.+..+++||+||..+.. ......++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 78999999999999999999765322 2335556677778889999999999974332 2334568899999
Q ss_pred EEEEeCCCcch-HHHHHHHHH----------------------------------------HHHhhc-------------
Q 030149 89 IYVVDSSDTER-LVIAKDEFH----------------------------------------AILEEE------------- 114 (182)
Q Consensus 89 i~v~d~~~~~s-~~~~~~~~~----------------------------------------~~~~~~------------- 114 (182)
++|+|+++++. ...+...+. .++...
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999977642 222211111 111100
Q ss_pred -----------ccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 115 -----------ELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 115 -----------~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
...-.|+++|+||+|+... ++... +. . ..+++++||++|.|++++++.+.+.+.-
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~---~~~~~-~~----~--~~~~~~~SA~~g~gi~~l~~~i~~~L~~ 227 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISI---EELDL-LA----R--QPNSVVISAEKGLNLDELKERIWDKLGL 227 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCH---HHHHH-Hh----c--CCCEEEEcCCCCCCHHHHHHHHHHHhCc
Confidence 0112589999999998643 22221 11 1 1248999999999999999999987753
No 197
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.88 E-value=2.9e-21 Score=133.98 Aligned_cols=155 Identities=22% Similarity=0.235 Sum_probs=110.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCc--------------c-------cccccceeEEEEEEcCeEEEEEEcCCCCCCcch
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVV--------------S-------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
||+++|+.|+|||||+++++...-. . ...|.......+.+++.++.+|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 6899999999999999999753211 0 111333455667778999999999999999888
Q ss_pred hhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH---HHHHHHhcc---------
Q 030149 78 WRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD---AAVTEALEL--------- 145 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~---~~~~~~~~~--------- 145 (182)
+..+++.+|++++|+|+.+.... ....++..... .+.|+++++||+|+...... +++...+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 88899999999999999876432 23334443322 47899999999998753211 111111111
Q ss_pred -----------------------------------------------ccccCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 146 -----------------------------------------------HKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 146 -----------------------------------------------~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
......-+|++..||.++.|+..|++.+.+.++
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 001223568999999999999999999988775
No 198
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.88 E-value=1.7e-21 Score=131.37 Aligned_cols=145 Identities=18% Similarity=0.143 Sum_probs=95.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC------------c-------ccccccceeEEEEEEcCeEEEEEEcCCCCCCcch
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEV------------V-------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~------------~-------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
.++|+++|+.++|||||+++|+.... . ...-|.......+..++..+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 57999999999999999999975310 0 0111333334444457789999999999888777
Q ss_pred hhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCCCCH-H----HHHHHhccccccCC
Q 030149 78 WRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPGALDD-A----AVTEALELHKIKNR 151 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~~ 151 (182)
....+..+|++++|+|+...-. ......+..+.. .+.| +|+++||+|+...... + ++...+........
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 7778889999999999976422 112222332222 3565 7899999998632211 1 12222222222234
Q ss_pred ccEEEEecccCCCCh
Q 030149 152 QWAIFKTSAIKGEGL 166 (182)
Q Consensus 152 ~~~~~~~S~~~~~gi 166 (182)
..+++++||++|.++
T Consensus 157 ~v~iipiSa~~g~n~ 171 (195)
T cd01884 157 NTPIVRGSALKALEG 171 (195)
T ss_pred CCeEEEeeCccccCC
Confidence 688999999999985
No 199
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.88 E-value=1.5e-21 Score=149.77 Aligned_cols=154 Identities=21% Similarity=0.211 Sum_probs=104.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCccc-----ccccceeEEEEEE----------------cCeEEEEEEcCCCCCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVST-----IPTIGFNVETVQY----------------NNIKFQVWDLGGQTSI 74 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~-----~~t~~~~~~~~~~----------------~~~~~~~~D~~g~~~~ 74 (182)
+..-|+++|++++|||||++++.+..+... .++++........ ....+.+|||||++.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 456799999999999999999998766542 2333433332221 1124899999999999
Q ss_pred cchhhhccCCCCeEEEEEeCCCc---chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--------------HH
Q 030149 75 RPYWRCYFPNTQAIIYVVDSSDT---ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--------------DA 137 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--------------~~ 137 (182)
..++..+++.+|++++|+|+++. ++++.+ ..+ . ..+.|+++++||+|+.+... ..
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i----~~l-~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~ 154 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEAL----NIL-R---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI 154 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH----HHH-H---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence 99999899999999999999873 333222 111 2 24789999999999964210 01
Q ss_pred HHHH-----------Hhccccc----------cCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 138 AVTE-----------ALELHKI----------KNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 138 ~~~~-----------~~~~~~~----------~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
.+.. .+..... .....+++++||++|+|+++|.+++....
T Consensus 155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 1100 0111100 12357899999999999999999886543
No 200
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.88 E-value=2.3e-21 Score=149.34 Aligned_cols=157 Identities=19% Similarity=0.202 Sum_probs=114.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC--CCcc-----------------cccccceeEEEEEEcCeEEEEEEcCCCCCCcchh
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG--EVVS-----------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~--~~~~-----------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 78 (182)
.||+++|+.++|||||+++|+.. .+.. ...|+......+.+.+..+++|||||+.+|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 48999999999999999999752 2211 1124445556678899999999999999999889
Q ss_pred hhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH---HHHHHHhccccc--cCCcc
Q 030149 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD---AAVTEALELHKI--KNRQW 153 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~---~~~~~~~~~~~~--~~~~~ 153 (182)
..+++.+|++++|+|+.+.. ......++..... .+.|+++|+||+|+...... +++...+..... ....+
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 99999999999999997642 3344455555543 46899999999998654221 222222221111 22357
Q ss_pred EEEEecccCCC----------ChHHHHHHHHHHHhh
Q 030149 154 AIFKTSAIKGE----------GLFEGLDWLSNTLKS 179 (182)
Q Consensus 154 ~~~~~S~~~~~----------gi~~l~~~l~~~~~~ 179 (182)
|++++||++|. |+..+++.+.+.++.
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 89999999995 799999999887753
No 201
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.88 E-value=3.3e-21 Score=152.04 Aligned_cols=151 Identities=21% Similarity=0.185 Sum_probs=106.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcch----------hhhc-
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY----------WRCY- 81 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~~- 81 (182)
+.++|+++|++|||||||+|++.+.+... ..| |.......+.+++.++.+|||||..++... ...+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 46799999999999999999998765421 222 333444456668899999999998765431 1223
Q ss_pred -cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 82 -FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 82 -~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
...+|++++|+|+++.++. ..++.++.+ .+.|+++++||+|+.+........+.+. +..+++++++|+
T Consensus 82 ~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpiSA 150 (772)
T PRK09554 82 LSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPLVS 150 (772)
T ss_pred hccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEEEe
Confidence 2478999999999886542 233344333 3799999999999864433222222222 223567999999
Q ss_pred cCCCChHHHHHHHHHHH
Q 030149 161 IKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~ 177 (182)
.+|+|++++.+.+.+..
T Consensus 151 ~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ecCCCHHHHHHHHHHhh
Confidence 99999999999988764
No 202
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.88 E-value=8.9e-22 Score=146.54 Aligned_cols=161 Identities=16% Similarity=0.075 Sum_probs=104.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccc------ccccceeEEE----------------E----EE------cCeE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST------IPTIGFNVET----------------V----QY------NNIK 62 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~------~~t~~~~~~~----------------~----~~------~~~~ 62 (182)
++.++|+++|+.++|||||+++|.+...... .-|....... . +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 5789999999999999999999975422111 1111111100 0 00 1467
Q ss_pred EEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHH
Q 030149 63 FQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEA 142 (182)
Q Consensus 63 ~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~ 142 (182)
+.+|||||++++...+......+|++++|+|+++..........+.. +... ...|+++++||+|+.+.....+..+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~-l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMA-LEII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHH-HHHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 99999999999988888888889999999999864311222222222 2221 23578999999999754222111122
Q ss_pred hccccc--cCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 143 LELHKI--KNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 143 ~~~~~~--~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+..... ...+++++++||++|+|++++++.|...+.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 111110 123678999999999999999999988654
No 203
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=1.2e-21 Score=142.57 Aligned_cols=148 Identities=22% Similarity=0.210 Sum_probs=108.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCccccc----ccceeEEEEEEcCeEEEEEEcCCCCCCc---------chhhhccCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYNNIKFQVWDLGGQTSIR---------PYWRCYFPN 84 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~~~ 84 (182)
..|+++|.|++|||||.|+|++.+...... |.+..+....+.+..|.++||+|.+... ......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 679999999999999999999988766444 5556667777888999999999965322 234456788
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCC
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGE 164 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (182)
+|++|+|+|....- ......+...+. ..++|+++|+||+|.... +....++-...+. ..+++||.+|.
T Consensus 84 ADvilfvVD~~~Gi--t~~D~~ia~~Lr---~~~kpviLvvNK~D~~~~---e~~~~efyslG~g----~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGREGI--TPADEEIAKILR---RSKKPVILVVNKIDNLKA---EELAYEFYSLGFG----EPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCCCCC--CHHHHHHHHHHH---hcCCCEEEEEEcccCchh---hhhHHHHHhcCCC----CceEeehhhcc
Confidence 99999999996542 223344444444 246999999999997622 2222222222111 28999999999
Q ss_pred ChHHHHHHHHHHH
Q 030149 165 GLFEGLDWLSNTL 177 (182)
Q Consensus 165 gi~~l~~~l~~~~ 177 (182)
|+.+|.+.+...+
T Consensus 152 Gi~dLld~v~~~l 164 (444)
T COG1160 152 GIGDLLDAVLELL 164 (444)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999999886
No 204
>PRK10218 GTP-binding protein; Provisional
Probab=99.88 E-value=3.3e-21 Score=148.44 Aligned_cols=159 Identities=19% Similarity=0.221 Sum_probs=112.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc--CCCccc-------------ccccc----eeEEEEEEcCeEEEEEEcCCCCCCc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM--GEVVST-------------IPTIG----FNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~--~~~~~~-------------~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
.+..||+++|+.++|||||+++++. +.+... ..+.+ .....+.+++..+++|||||+.++.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 4567999999999999999999986 222221 11222 3344566788999999999999999
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHH---HHHHHhccccc--cC
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDA---AVTEALELHKI--KN 150 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~---~~~~~~~~~~~--~~ 150 (182)
..+..+++.+|++++|+|+.+... ......+..... .+.|.++++||+|+......+ ++...+..... ..
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 999999999999999999976532 222333333322 478899999999987543322 22223211111 22
Q ss_pred CccEEEEecccCCC----------ChHHHHHHHHHHHh
Q 030149 151 RQWAIFKTSAIKGE----------GLFEGLDWLSNTLK 178 (182)
Q Consensus 151 ~~~~~~~~S~~~~~----------gi~~l~~~l~~~~~ 178 (182)
..+|++++||++|. |+..|++.+.+.++
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 45789999999998 58889988887765
No 205
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.1e-22 Score=126.25 Aligned_cols=162 Identities=36% Similarity=0.610 Sum_probs=141.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
.|.-+++++|-.++|||||++.+-.+......||...+...+.+.+.++.-+|.+|+...+..|..++..+|++++.+|+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda 97 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA 97 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccc------------cCCccEEEEecccC
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKI------------KNRQWAIFKTSAIK 162 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~S~~~ 162 (182)
.+.+++.+.+..+..++......+.|+++.+||+|.+.+...++....+..... ......+|.||...
T Consensus 98 ~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~ 177 (193)
T KOG0077|consen 98 YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVR 177 (193)
T ss_pred hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEc
Confidence 999999999999998888777789999999999999988777776665543211 11345589999999
Q ss_pred CCChHHHHHHHHHH
Q 030149 163 GEGLFEGLDWLSNT 176 (182)
Q Consensus 163 ~~gi~~l~~~l~~~ 176 (182)
+.|--+.|.++...
T Consensus 178 ~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 178 KMGYGEGFKWLSQY 191 (193)
T ss_pred cCccceeeeehhhh
Confidence 99888888777654
No 206
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.87 E-value=7.4e-22 Score=123.32 Aligned_cols=166 Identities=19% Similarity=0.227 Sum_probs=130.4
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE--EEE--cCeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
.+.-.++|.++|++..|||||+-.+.++.+.+ +..+.|.+... +.+ .+..+.+||.+|++++..+.+-...++-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 34557999999999999999999999988855 77788866543 333 56889999999999999999998999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
++++||.+.+.++.....|+.+.... +.....|+|++|.|+.-.. +.++.....+...++..+.+.|.||+..+.|
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~--NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN 173 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGL--NKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN 173 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhcc--CCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence 99999999999999999999998543 2345568899999974221 1122112222344455677899999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 030149 166 LFEGLDWLSNTLKSI 180 (182)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (182)
++.+|..+...+..+
T Consensus 174 v~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 174 VQKIFKIVLAKLFNL 188 (205)
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999998887654
No 207
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.87 E-value=3.6e-21 Score=148.63 Aligned_cols=143 Identities=24% Similarity=0.280 Sum_probs=99.2
Q ss_pred cCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcch------hhhcc--CCCCeEEEEE
Q 030149 24 GLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY------WRCYF--PNTQAIIYVV 92 (182)
Q Consensus 24 G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~d~ii~v~ 92 (182)
|.+|+|||||+|++.+..... ..| |.......+.+++..+++|||||+.++... ...++ +.+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 899999999999999876522 333 333444556678889999999998876543 23332 4789999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
|+++.+. ...+..+..+ .+.|+++|+||+|+.+........+.+. +..+.+++++||++|+|++++++.
T Consensus 81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~----~~lg~pvv~tSA~tg~Gi~eL~~~ 149 (591)
T TIGR00437 81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLE----ERLGVPVVPTSATEGRGIERLKDA 149 (591)
T ss_pred cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHH----HHcCCCEEEEECCCCCCHHHHHHH
Confidence 9987543 2223333322 4799999999999854322221122222 223467999999999999999999
Q ss_pred HHHHH
Q 030149 173 LSNTL 177 (182)
Q Consensus 173 l~~~~ 177 (182)
+.+..
T Consensus 150 i~~~~ 154 (591)
T TIGR00437 150 IRKAI 154 (591)
T ss_pred HHHHh
Confidence 98754
No 208
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.87 E-value=2.7e-21 Score=132.19 Aligned_cols=147 Identities=19% Similarity=0.158 Sum_probs=94.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc----------------------------------cccccceeEEEEEEcCeEEE
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS----------------------------------TIPTIGFNVETVQYNNIKFQ 64 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~----------------------------------~~~t~~~~~~~~~~~~~~~~ 64 (182)
||+++|++|+|||||+++|+...-.. ...|.......+.+.+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 68999999999999999996432111 11133344445566788999
Q ss_pred EEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH--HHHHHH
Q 030149 65 VWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD--AAVTEA 142 (182)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~--~~~~~~ 142 (182)
+|||||+.++.......++.+|++++|+|++++..-. ... ...+.... ...++|+|+||+|+.+.... ..+...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~-~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRR-HSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHH-HHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 9999999887666666788999999999998753211 111 11222221 12457889999998643211 122222
Q ss_pred hccc--cccCCccEEEEecccCCCChHHH
Q 030149 143 LELH--KIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 143 ~~~~--~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+... .......+++++||++|.|+.+.
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 2211 11122356999999999999764
No 209
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.87 E-value=4.7e-21 Score=142.65 Aligned_cols=161 Identities=16% Similarity=0.078 Sum_probs=102.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc------cccccceeEEEEEE------------------c--------CeE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS------TIPTIGFNVETVQY------------------N--------NIK 62 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~------~~~t~~~~~~~~~~------------------~--------~~~ 62 (182)
.+.++|+++|+.++|||||+.+|.+..... ..-|.........+ . ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 567999999999999999999996532111 11122221111110 0 257
Q ss_pred EEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHH
Q 030149 63 FQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEA 142 (182)
Q Consensus 63 ~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~ 142 (182)
+.+|||||++++..........+|++++|+|++++.........+... ... ...|+++|+||+|+.++.......+.
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~~ 163 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENYEQ 163 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHHHH
Confidence 999999999887766666667789999999998653111112222222 221 13478999999999754322211121
Q ss_pred hccccc--cCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 143 LELHKI--KNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 143 ~~~~~~--~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+..... .....+++++||++|+|+++|++.|...+.
T Consensus 164 i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 164 IKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 111110 123578999999999999999999988764
No 210
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.86 E-value=9.4e-21 Score=124.57 Aligned_cols=167 Identities=16% Similarity=0.147 Sum_probs=111.9
Q ss_pred hhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCC-cccccccceeEEEEEEc-CeEEEEEEcCCCC----------CCcc
Q 030149 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEV-VSTIPTIGFNVETVQYN-NIKFQVWDLGGQT----------SIRP 76 (182)
Q Consensus 9 ~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~----------~~~~ 76 (182)
.+.+++....-|+++|.+++|||||||++++.+. ...+.|+|.+..-..+. +..+.++|.||.. .+..
T Consensus 16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred HhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHH
Confidence 3456667788999999999999999999999764 55666777554433332 2239999999932 2333
Q ss_pred hhhhccCC---CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCcc
Q 030149 77 YWRCYFPN---TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQW 153 (182)
Q Consensus 77 ~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (182)
+...|++. ..++++++|+..+-.- ....+.+++. ..+.|+++++||+|.......................+
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~--~D~em~~~l~---~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~ 170 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKD--LDREMIEFLL---ELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD 170 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcH--HHHHHHHHHH---HcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc
Confidence 44455543 5788999999776432 2222333333 35899999999999886544433223332222222333
Q ss_pred E--EEEecccCCCChHHHHHHHHHHHhhc
Q 030149 154 A--IFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 154 ~--~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
. ++..|+.++.|++++.+.|.+.+...
T Consensus 171 ~~~~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 171 DQWVVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred cceEEEEecccccCHHHHHHHHHHHhhcc
Confidence 2 88899999999999999999887653
No 211
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.86 E-value=2.6e-21 Score=133.21 Aligned_cols=147 Identities=17% Similarity=0.182 Sum_probs=96.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC---------------------------cc-------cccccceeEEEEEEcCeEEE
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEV---------------------------VS-------TIPTIGFNVETVQYNNIKFQ 64 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~---------------------------~~-------~~~t~~~~~~~~~~~~~~~~ 64 (182)
+|+++|++++|||||+.+|+...- .. ..-|.......+.+.+.++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 689999999999999999953210 00 11133445556677899999
Q ss_pred EEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcch---H---HHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC-C--
Q 030149 65 VWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTER---L---VIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL-D-- 135 (182)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~-~-- 135 (182)
+|||||+..+...+...++.+|++++|+|+.+... + ......+... ... ...|+++++||+|+.... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc--CCCeEEEEEEccccccccccHH
Confidence 99999998777767777888999999999987421 1 1122222222 211 236899999999997421 1
Q ss_pred -HHHHHHHh----ccccccCCccEEEEecccCCCChHH
Q 030149 136 -DAAVTEAL----ELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 136 -~~~~~~~~----~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
.+.+.+.+ .........++++++||++|+|+++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 12222222 2222233467899999999999873
No 212
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.86 E-value=1.6e-21 Score=122.80 Aligned_cols=135 Identities=23% Similarity=0.315 Sum_probs=92.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCC----CCCcchhhhccCCCCeEEEEEeC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQ----TSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~----~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
||+++|+.|||||||+++|.+... .+..|....+ .+ .++||||. ..+.........++|+++++.|+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~-----~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da 73 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEY-----YD---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA 73 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEe-----cc---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence 799999999999999999987554 3333333221 11 34799994 33344444456789999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC-CCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP-GALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
+++.+. ....+... -+.|+|=|+||+|+. ++.+.+...+.+.....+ .+|++|+.+|+|+++|.++|
T Consensus 74 t~~~~~--~pP~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 74 TEPRSV--FPPGFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred CCCCcc--CCchhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHHH
Confidence 887431 11222222 258999999999998 333444444444443333 27999999999999999987
Q ss_pred H
Q 030149 174 S 174 (182)
Q Consensus 174 ~ 174 (182)
.
T Consensus 142 ~ 142 (143)
T PF10662_consen 142 E 142 (143)
T ss_pred h
Confidence 4
No 213
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.86 E-value=1.2e-20 Score=129.82 Aligned_cols=152 Identities=24% Similarity=0.222 Sum_probs=98.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc-----c------------ccc-------ccee-----------------EEEEE
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS-----T------------IPT-------IGFN-----------------VETVQ 57 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~-----~------------~~t-------~~~~-----------------~~~~~ 57 (182)
+|+++|+.++|||||++++..+.+.. + .-| .+.. ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999998654422 0 000 1111 02233
Q ss_pred EcCeEEEEEEcCCCCCCcchhhhccC--CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC
Q 030149 58 YNNIKFQVWDLGGQTSIRPYWRCYFP--NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD 135 (182)
Q Consensus 58 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 135 (182)
..+..+.++||||++.+.......+. .+|++++|+|+..... ......+..+ . ..+.|+++|+||+|+.....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l-~---~~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLA-L---ALNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHH-H---HcCCCEEEEEECccccCHHH
Confidence 45678999999999888665554453 6899999999876532 2222222222 2 24689999999999865433
Q ss_pred HHHHHHHhcccc-------------------------ccCCccEEEEecccCCCChHHHHHHHHH
Q 030149 136 DAAVTEALELHK-------------------------IKNRQWAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 136 ~~~~~~~~~~~~-------------------------~~~~~~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
.......+.... ......|+|.+|+.+|+|+++|++.|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 333222222111 1122448999999999999999987753
No 214
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.86 E-value=1.6e-20 Score=144.70 Aligned_cols=156 Identities=22% Similarity=0.197 Sum_probs=104.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcccc-----cccceeEEEEEEc----------------CeEEEEEEcCCCC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTI-----PTIGFNVETVQYN----------------NIKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~-----~t~~~~~~~~~~~----------------~~~~~~~D~~g~~ 72 (182)
..+...|+++|++++|||||++++.+....... ++.+......... -..+.+|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 356778999999999999999999876544322 2444333322210 0137899999999
Q ss_pred CCcchhhhccCCCCeEEEEEeCCC---cchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--------------
Q 030149 73 SIRPYWRCYFPNTQAIIYVVDSSD---TERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD-------------- 135 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-------------- 135 (182)
.+..++...+..+|++++|+|+++ ++++..+. .+. ..+.|+++++||+|+.....
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~---~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~ 154 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILK---RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ 154 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHH---HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence 999888888899999999999987 33333221 112 24789999999999852111
Q ss_pred HHHHH-----------HHhccccc----------cCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 136 DAAVT-----------EALELHKI----------KNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 136 ~~~~~-----------~~~~~~~~----------~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
...+. ..+..... .....+++++||.+|+|++++++.+...+
T Consensus 155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 01111 11111111 11357899999999999999998886533
No 215
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.86 E-value=2e-20 Score=116.69 Aligned_cols=162 Identities=23% Similarity=0.346 Sum_probs=125.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccc-eeEEEEEE---cCeEEEEEEcCCCCCC-cchhhhccCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIG-FNVETVQY---NNIKFQVWDLGGQTSI-RPYWRCYFPNTQ 86 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~-~~~~~~~~---~~~~~~~~D~~g~~~~-~~~~~~~~~~~d 86 (182)
.+..+|+|+|..++|||+++++++.+.... +.||+. +....++- ....+.++||.|-... ..+-..|++-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 577899999999999999999998766443 666766 33333332 3468999999997666 556677888899
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 87 AIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
++++|++..+++||+.....-..+-.......+||++++||+|+.++ .+.....++.++....+..+++++.+...+
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p---~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL 163 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP---REVDMDVAQIWAKREKVKLWEVTAMDRPSL 163 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc---hhcCHHHHHHHHhhhheeEEEEEeccchhh
Confidence 99999999999999876544444444555667999999999999754 333344455666667788999999999999
Q ss_pred HHHHHHHHHHHhh
Q 030149 167 FEGLDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (182)
-|-|-.+...+..
T Consensus 164 ~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 164 YEPFTYLASRLHQ 176 (198)
T ss_pred hhHHHHHHHhccC
Confidence 9999999888764
No 216
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.86 E-value=3.9e-20 Score=122.37 Aligned_cols=154 Identities=23% Similarity=0.213 Sum_probs=97.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE-cCeEEEEEEcCCCCCC----------cchhhhcc---C
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY-NNIKFQVWDLGGQTSI----------RPYWRCYF---P 83 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~----------~~~~~~~~---~ 83 (182)
.|+++|++|+|||||++++.+..... ..++.+.+.....+ ....+.+|||||.... ......++ .
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE 80 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence 38999999999999999999655443 45554443322222 2338999999995432 22222333 3
Q ss_pred CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccc-cCCccEEEEecccC
Q 030149 84 NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKI-KNRQWAIFKTSAIK 162 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~ 162 (182)
..+++++++|.....+... ..+...+.. .+.|+++++||+|+..+............... .....+++++|+++
T Consensus 81 ~~~~~~~v~d~~~~~~~~~--~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~ 155 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEID--LEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLK 155 (170)
T ss_pred hhhEEEEEEEcCcCCCHhH--HHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCC
Confidence 4678999999876532221 111122222 35899999999999654333333333221111 23456699999999
Q ss_pred CCChHHHHHHHHHHH
Q 030149 163 GEGLFEGLDWLSNTL 177 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~ 177 (182)
+.|+.++++.|.+.+
T Consensus 156 ~~~~~~l~~~l~~~~ 170 (170)
T cd01876 156 GQGIDELRALIEKWL 170 (170)
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999998753
No 217
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.86 E-value=9.1e-21 Score=146.72 Aligned_cols=157 Identities=18% Similarity=0.111 Sum_probs=104.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc------cccccceeEEEEEE-cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS------TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~------~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+-|+++|+.++|||||++++.+..... ...|+......+.. ++..+.+|||||++.+.......+..+|++++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 358999999999999999998643221 23344443333333 45678999999999987777777899999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCCCCHHHHHHHhcccc--ccCCccEEEEecccCCCChH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPGALDDAAVTEALELHK--IKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~gi~ 167 (182)
|+|+++... ...... ..++.. .+.| +++|+||+|+.++...+...+.+.... ......+++++||++|+|++
T Consensus 81 VVda~eg~~-~qT~eh-l~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 81 VVACDDGVM-AQTREH-LAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID 155 (614)
T ss_pred EEECCCCCc-HHHHHH-HHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence 999976421 111122 222222 2344 689999999975322222222222111 11124679999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
++++.|.+....
T Consensus 156 ~L~~~L~~~~~~ 167 (614)
T PRK10512 156 ALREHLLQLPER 167 (614)
T ss_pred HHHHHHHHhhcc
Confidence 999999876543
No 218
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.85 E-value=6.3e-21 Score=131.93 Aligned_cols=160 Identities=21% Similarity=0.232 Sum_probs=105.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccc----eeEEEEEEcCeEEEEEEcCCCCC------------Ccchh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG----FNVETVQYNNIKFQVWDLGGQTS------------IRPYW 78 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~------------~~~~~ 78 (182)
.+.++|+|+|+|++|||||.|.+++.+....+.... .....+.-++..+.|+||||--. +....
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 678999999999999999999999999877544333 33333444889999999999211 11122
Q ss_pred hhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC-----------------HHHHHH
Q 030149 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD-----------------DAAVTE 141 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-----------------~~~~~~ 141 (182)
...++.+|++++++|++++... -....+.....+ .+.|-++|+||.|...... .-++.+
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~-l~p~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTP-LHPRVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCc-cChHHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 3347789999999999863221 111222222222 3688899999999643210 112222
Q ss_pred Hhcccc-----ccCCcc----EEEEecccCCCChHHHHHHHHHHHh
Q 030149 142 ALELHK-----IKNRQW----AIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 142 ~~~~~~-----~~~~~~----~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
.+.... ....+| .+|.+||+.|+|++++.++|+.++.
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 222111 011123 3999999999999999999998764
No 219
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=5.9e-20 Score=135.89 Aligned_cols=158 Identities=20% Similarity=0.196 Sum_probs=121.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccc---ccceeEEEEEE---cCeEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIP---TIGFNVETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~---t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.+.+-|.++|+...|||||+..+-+.+.....+ |....-..+.. +...+.|.|||||+.|..++..-..-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 466789999999999999999998777665333 44444444444 357899999999999999999989999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccC----CccEEEEecccCCC
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKN----RQWAIFKTSAIKGE 164 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~S~~~~~ 164 (182)
++|+++++. .........++....+.|+++++||+|..+. .++.+...+++..... ....++++||++|+
T Consensus 83 ILVVa~dDG-----v~pQTiEAI~hak~a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 83 ILVVAADDG-----VMPQTIEAINHAKAAGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEEccCC-----cchhHHHHHHHHHHCCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 999999875 2233333344555579999999999999844 5666666665543333 24569999999999
Q ss_pred ChHHHHHHHHHHHh
Q 030149 165 GLFEGLDWLSNTLK 178 (182)
Q Consensus 165 gi~~l~~~l~~~~~ 178 (182)
|+++|++.+.-..+
T Consensus 157 Gi~eLL~~ill~ae 170 (509)
T COG0532 157 GIDELLELILLLAE 170 (509)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998876654
No 220
>PRK12736 elongation factor Tu; Reviewed
Probab=99.84 E-value=2.7e-20 Score=138.20 Aligned_cols=160 Identities=18% Similarity=0.153 Sum_probs=104.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCC----------c---------ccccccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEV----------V---------STIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~----------~---------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
..+.++|+++|+.++|||||+++|++... . ...-|.......+..++..+.++||||++++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 46789999999999999999999975210 0 0111333333333346778999999999888
Q ss_pred cchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCCCCH-H----HHHHHhccccc
Q 030149 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPGALDD-A----AVTEALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~-~----~~~~~~~~~~~ 148 (182)
..........+|++++|+|+.+... ......+..+ .. .+.| +|+++||+|+.+.... + ++...+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~-~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLA-RQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 7777777788999999999976421 1122233222 22 3566 6789999998743221 1 22222222222
Q ss_pred cCCccEEEEecccCCC--------ChHHHHHHHHHHHh
Q 030149 149 KNRQWAIFKTSAIKGE--------GLFEGLDWLSNTLK 178 (182)
Q Consensus 149 ~~~~~~~~~~S~~~~~--------gi~~l~~~l~~~~~ 178 (182)
.....+++++||++|. ++.++++.+.+.+.
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 2235689999999983 57888888877654
No 221
>PRK12735 elongation factor Tu; Reviewed
Probab=99.84 E-value=5.5e-20 Score=136.58 Aligned_cols=159 Identities=18% Similarity=0.157 Sum_probs=102.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC-------CCc-----c-------cccccceeEEEEEEcCeEEEEEEcCCCCCCc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG-------EVV-----S-------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~-------~~~-----~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
.+.++|+++|++++|||||+++|++. .+. . ..-|.......+..++..+.++||||++++.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 56799999999999999999999852 110 0 1113333333344467789999999998887
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEE-EEeecCCCCCCCCH-H----HHHHHhcccccc
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVL-IFANKQDLPGALDD-A----AVTEALELHKIK 149 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~Dl~~~~~~-~----~~~~~~~~~~~~ 149 (182)
......+..+|++++|+|+.+... ......+..+ . ..+.|.+ +++||+|+.+.... + ++...+......
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~-~---~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-R---QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHH-H---HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 777777888999999999976422 1122222222 2 2356755 68999999743221 1 122222211111
Q ss_pred CCccEEEEecccCCC----------ChHHHHHHHHHHHh
Q 030149 150 NRQWAIFKTSAIKGE----------GLFEGLDWLSNTLK 178 (182)
Q Consensus 150 ~~~~~~~~~S~~~~~----------gi~~l~~~l~~~~~ 178 (182)
....+++++|+++|. ++.+|++.|.+.++
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 234789999999984 67888888877653
No 222
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4.8e-20 Score=118.91 Aligned_cols=156 Identities=21% Similarity=0.321 Sum_probs=131.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..++++++|+.|.|||+++++.+.+.+.. +.+|.|.......+ +..++..|||+|++.+......++-+..+.|+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 47899999999999999999999999887 88899977776655 45899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
+||+...-++.+...|..++..... +.||++++||.|..... .+...-...+..++.|+++|++.+.|.+.-|
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~--NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVRE--NIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhc--CCCeeeeccceeccccc-----cccccceeeecccceeEEeecccccccccch
Confidence 9999999899999999999987654 69999999999975432 1111112234457779999999999999999
Q ss_pred HHHHHHHh
Q 030149 171 DWLSNTLK 178 (182)
Q Consensus 171 ~~l~~~~~ 178 (182)
-++.+.+.
T Consensus 162 l~LarKl~ 169 (216)
T KOG0096|consen 162 LWLARKLT 169 (216)
T ss_pred HHHhhhhc
Confidence 99988764
No 223
>CHL00071 tufA elongation factor Tu
Probab=99.83 E-value=7.5e-20 Score=136.40 Aligned_cols=147 Identities=19% Similarity=0.152 Sum_probs=95.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCc---------------c----cccccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV---------------S----TIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~---------------~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
..+.++|+++|++++|||||+++|++.... . ..-|.......+..++..+.++||||+.++
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 467799999999999999999999864110 0 111222223334446788999999999888
Q ss_pred cchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCCCCH-H----HHHHHhccccc
Q 030149 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPGALDD-A----AVTEALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~-~----~~~~~~~~~~~ 148 (182)
.......+..+|++++|+|+..... ......+..+ .. .+.| +|+++||+|+.+.... + ++...+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~-~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLA-KQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 7777777889999999999976421 1222222222 22 3567 7789999999753221 1 22222222222
Q ss_pred cCCccEEEEecccCCCC
Q 030149 149 KNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 149 ~~~~~~~~~~S~~~~~g 165 (182)
.....+++++|+.+|.+
T Consensus 164 ~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 164 PGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCcceEEEcchhhccc
Confidence 22357899999999864
No 224
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.83 E-value=1.5e-19 Score=127.58 Aligned_cols=137 Identities=18% Similarity=0.081 Sum_probs=91.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--c-------------------ccccccceeEEEEEEcCeEEEEEEcCCCCCCcch
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEV--V-------------------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~--~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
||+++|++|+|||||+++++...- . ...-|+......+.+.+..+.++||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 689999999999999999963111 0 0112444556667788999999999999988888
Q ss_pred hhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEE
Q 030149 78 WRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFK 157 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
+...++.+|++++|+|+.+...- .....+... ...+.|+++++||+|+.+. +.+...+.+........-...++
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~----~~~~~p~ivviNK~D~~~a-~~~~~~~~l~~~l~~~~~~~~~P 154 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEP-QTETVWRQA----DRYNVPRIAFVNKMDRTGA-DFFRVVEQIREKLGANPVPLQLP 154 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHH----HHcCCCEEEEEECCCCCCC-CHHHHHHHHHHHhCCCceEEEec
Confidence 88899999999999999765321 122233322 2247899999999998754 33333333332222222223666
Q ss_pred eccc
Q 030149 158 TSAI 161 (182)
Q Consensus 158 ~S~~ 161 (182)
+|+.
T Consensus 155 isa~ 158 (270)
T cd01886 155 IGEE 158 (270)
T ss_pred cccC
Confidence 6665
No 225
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=5.1e-19 Score=130.88 Aligned_cols=160 Identities=19% Similarity=0.189 Sum_probs=122.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCccccc---ccceeEEEEEE-cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIP---TIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~---t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.++..-|.|+|+...|||||+..|.+.+...... |.++.-+.+.. .+.++.|.||||+..|..++..-..-+|+++
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 3578899999999999999999998777655222 44444444444 7799999999999999999999889999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccccc----CCccEEEEecccCCCC
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIK----NRQWAIFKTSAIKGEG 165 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~~~g 165 (182)
+|+.++|. ......+.+.+....+.|+|+.+||+|.++. .++.+.+.+...... .....++++||++|+|
T Consensus 230 LVVAadDG-----VmpQT~EaIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n 303 (683)
T KOG1145|consen 230 LVVAADDG-----VMPQTLEAIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN 303 (683)
T ss_pred EEEEccCC-----ccHhHHHHHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence 99999776 3344444445556679999999999998765 555555555433222 2456799999999999
Q ss_pred hHHHHHHHHHHHhh
Q 030149 166 LFEGLDWLSNTLKS 179 (182)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (182)
++.|-+.+.-+.+-
T Consensus 304 l~~L~eaill~Ae~ 317 (683)
T KOG1145|consen 304 LDLLEEAILLLAEV 317 (683)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999988776543
No 226
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.82 E-value=3.5e-19 Score=120.81 Aligned_cols=158 Identities=15% Similarity=0.115 Sum_probs=97.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce---eEE--EEEE-cCeEEEEEEcCCCCCCcchhh-----hccCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF---NVE--TVQY-NNIKFQVWDLGGQTSIRPYWR-----CYFPN 84 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~---~~~--~~~~-~~~~~~~~D~~g~~~~~~~~~-----~~~~~ 84 (182)
+++|+++|.+|+|||||+|++.+..... ..++.+. +.. .+.. ....+.+|||||..+...... ..+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 4689999999999999999999855432 2222221 111 1111 234789999999764332222 22567
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC---------HHHHHHHhccc----ccc--
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD---------DAAVTEALELH----KIK-- 149 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~---------~~~~~~~~~~~----~~~-- 149 (182)
+|+++++.+. ++......+...+.. .+.|+++|+||+|+..+.. .++..+.+.+. ...
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8998888542 233343333333333 2689999999999853211 12222222211 111
Q ss_pred CCccEEEEeccc--CCCChHHHHHHHHHHHhhcC
Q 030149 150 NRQWAIFKTSAI--KGEGLFEGLDWLSNTLKSIG 181 (182)
Q Consensus 150 ~~~~~~~~~S~~--~~~gi~~l~~~l~~~~~~~~ 181 (182)
....++|.+|+. .+.++..+.+.+...|.+.+
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 223469999998 67999999999999988653
No 227
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.82 E-value=8e-19 Score=133.81 Aligned_cols=114 Identities=18% Similarity=0.263 Sum_probs=83.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc--CCCcc-----------------------cccccceeEEEEEEcCeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM--GEVVS-----------------------TIPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~--~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.+..+|+++|++++|||||+++|+. +.... ...++......+.+++..+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4678999999999999999999963 11100 0112234445677789999999999
Q ss_pred CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
|+.++......+++.+|++|+|+|+.+... .....++.. ....+.|+++++||+|+...
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~----~~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEV----CRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHH----HHhcCCCEEEEEECCccccc
Confidence 999988877778899999999999976532 122233322 22357999999999998654
No 228
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.82 E-value=2.8e-19 Score=122.52 Aligned_cols=157 Identities=21% Similarity=0.323 Sum_probs=100.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc----cccccceeEEEEEE-cCeEEEEEEcCCCCCCcch-----hhhccCCCCeE
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPY-----WRCYFPNTQAI 88 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~----~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~-----~~~~~~~~d~i 88 (182)
||+++|+.+|||||+.+.+..+-.+. ..+|...+...+.. +...+++||+||+..+... ....++++.++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 79999999999999999998664332 46788888888875 6779999999999766443 46678999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhh--cccCCCeEEEEeecCCCCCCCCHHHHHHHhcccc---ccC---CccEEEEecc
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEE--EELRGAVVLIFANKQDLPGALDDAAVTEALELHK---IKN---RQWAIFKTSA 160 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~S~ 160 (182)
|||+|+...+ +......+...+.. ...++..+.++++|+|+..+....+..+...+.. ... ..+.++.+|.
T Consensus 81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 9999998444 33333333333322 2346889999999999976544433333222111 111 2478999999
Q ss_pred cCCCChHHHHHHHHHHH
Q 030149 161 IKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~ 177 (182)
.+. .+-+.|..+...+
T Consensus 160 ~D~-Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 160 WDE-SLYEAWSKIVQKL 175 (232)
T ss_dssp TST-HHHHHHHHHHHTT
T ss_pred cCc-HHHHHHHHHHHHH
Confidence 994 6888887777654
No 229
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=3.9e-19 Score=132.12 Aligned_cols=146 Identities=18% Similarity=0.149 Sum_probs=93.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCC-------C-----cc-------cccccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGE-------V-----VS-------TIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~-------~-----~~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
..+.++|+++|+.++|||||+++|++.. . .. ..-|.......++.++..+.+|||||++++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 3678999999999999999999997320 0 00 112334434444446778999999999988
Q ss_pred cchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeE-EEEeecCCCCCCCCH-H----HHHHHhccccc
Q 030149 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVV-LIFANKQDLPGALDD-A----AVTEALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-ivv~nK~Dl~~~~~~-~----~~~~~~~~~~~ 148 (182)
..........+|++++|+|+.+... ......+..+ .. .+.|. ++++||+|+.+.... + ++...+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~-~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 7766666778999999999976422 1122222222 22 25664 578999998753221 1 12222222222
Q ss_pred cCCccEEEEecccCCC
Q 030149 149 KNRQWAIFKTSAIKGE 164 (182)
Q Consensus 149 ~~~~~~~~~~S~~~~~ 164 (182)
....++++++||.+|.
T Consensus 164 ~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 164 PGDDTPIIRGSALKAL 179 (394)
T ss_pred CccCccEEECcccccc
Confidence 2223789999999885
No 230
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.82 E-value=3.1e-19 Score=122.56 Aligned_cols=108 Identities=17% Similarity=0.155 Sum_probs=76.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCccc------------cc----------ccceeEEEEEE-----cCeEEEEEEcCCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVST------------IP----------TIGFNVETVQY-----NNIKFQVWDLGGQ 71 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~------------~~----------t~~~~~~~~~~-----~~~~~~~~D~~g~ 71 (182)
+|+++|+.|+|||||+++++....... .. +.......+.+ ....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 799999999999999999976432210 00 11122222222 2478999999999
Q ss_pred CCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
.++......++..+|++++|+|+.+..+... ..++..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 9998888888999999999999987765432 233333221 358999999999985
No 231
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.81 E-value=3.1e-19 Score=135.61 Aligned_cols=154 Identities=25% Similarity=0.251 Sum_probs=111.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCc-cccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcc------hhhhcc--CC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVV-STIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRP------YWRCYF--PN 84 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~ 84 (182)
+..+|+++|+||+|||||.|++.+.... ...| |.+.....+.+.+.+++++|+||...... ....++ .+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 4567999999999999999999976543 2444 66777778888999999999999554432 223333 45
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCC
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGE 164 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (182)
+|+++.|+|+++.++ ......++++ -+.|+++++|++|..+....+...+.+. +..++|++++||++|+
T Consensus 82 ~D~ivnVvDAtnLeR---nLyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~----~~LGvPVv~tvA~~g~ 150 (653)
T COG0370 82 PDLIVNVVDATNLER---NLYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLS----KLLGVPVVPTVAKRGE 150 (653)
T ss_pred CCEEEEEcccchHHH---HHHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHH----HHhCCCEEEEEeecCC
Confidence 799999999988754 2233344444 3789999999999854322221122221 3356789999999999
Q ss_pred ChHHHHHHHHHHHhhc
Q 030149 165 GLFEGLDWLSNTLKSI 180 (182)
Q Consensus 165 gi~~l~~~l~~~~~~~ 180 (182)
|++++...+.+..++.
T Consensus 151 G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 151 GLEELKRAIIELAESK 166 (653)
T ss_pred CHHHHHHHHHHhcccc
Confidence 9999999998765543
No 232
>PRK00049 elongation factor Tu; Reviewed
Probab=99.81 E-value=3.6e-19 Score=132.18 Aligned_cols=158 Identities=17% Similarity=0.147 Sum_probs=102.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCc-------------------ccccccceeEEEEEEcCeEEEEEEcCCCCCCc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVV-------------------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
.+.++|+++|+.++|||||+++|++.... ...-|.......+..++..+.++||||+.++.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 67799999999999999999999862110 01113333333344467889999999998887
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEE-EEeecCCCCCCCCH-H----HHHHHhcccccc
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVL-IFANKQDLPGALDD-A----AVTEALELHKIK 149 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~Dl~~~~~~-~----~~~~~~~~~~~~ 149 (182)
......+..+|++++|+|+.+... ......+..+ .. .+.|.+ +++||+|+...... + ++...+......
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~-~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHH-HH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 777777889999999999976422 1222222222 22 357865 68999999742111 1 222222222222
Q ss_pred CCccEEEEecccCCC----------ChHHHHHHHHHHH
Q 030149 150 NRQWAIFKTSAIKGE----------GLFEGLDWLSNTL 177 (182)
Q Consensus 150 ~~~~~~~~~S~~~~~----------gi~~l~~~l~~~~ 177 (182)
....+++++||++|. ++.++++.|.+.+
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 245789999999875 5677777777654
No 233
>PRK13351 elongation factor G; Reviewed
Probab=99.81 E-value=9.1e-19 Score=138.38 Aligned_cols=115 Identities=21% Similarity=0.145 Sum_probs=89.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCC--------------c-------ccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEV--------------V-------STIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~--------------~-------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
..+..||+|+|+.|+|||||+++|+.... . .+..|+......+.+.+..+++|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 35678999999999999999999974211 0 12335556666788899999999999999
Q ss_pred CCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
++...+..+++.+|++++|+|+++....... ..+.... ..+.|+++++||+|+...
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~----~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQAD----RYGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHH----hcCCCEEEEEECCCCCCC
Confidence 9988888899999999999999887654433 3333322 247899999999998754
No 234
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=1.3e-18 Score=121.78 Aligned_cols=155 Identities=21% Similarity=0.196 Sum_probs=111.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCeEEEEEEcCCCCC-----Ccch---hhhcc-
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTS-----IRPY---WRCYF- 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-----~~~~---~~~~~- 82 (182)
.....|+|.|.||+|||||++.+...+... ...|.+.+.+.+..+..+++++||||.-+ .... ....+
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 467899999999999999999998876533 44588899999999999999999999422 1111 11122
Q ss_pred CCCCeEEEEEeCCCcc--hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 83 PNTQAIIYVVDSSDTE--RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
.-.++++|+||.+... +.+.....+..+.... +.|+++|+||+|..+....++........ .......+++
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~~~~~~~~~~~----~~~~~~~~~~ 318 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKLEEIEASVLEE----GGEEPLKISA 318 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHHHHHHHHHHhh----ccccccceee
Confidence 2368999999997755 4555556666665543 48999999999998665555554443322 1222567888
Q ss_pred cCCCChHHHHHHHHHH
Q 030149 161 IKGEGLFEGLDWLSNT 176 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~ 176 (182)
..+.+++.+...+...
T Consensus 319 ~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 319 TKGCGLDKLREEVRKT 334 (346)
T ss_pred eehhhHHHHHHHHHHH
Confidence 8888888877776665
No 235
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.81 E-value=9e-20 Score=135.58 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=120.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccc---eeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG---FNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+.++|+++|+.|+||||||-++...++....|..- .....+.-......++|++..++-+......++.+|+++++
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lv 86 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLV 86 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEE
Confidence 678999999999999999999999988877444211 11122222556689999998877777777789999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhccc--CCCeEEEEeecCCCCCCCCH--HH-HHHHhccccccCCcc-EEEEecccCCCC
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEEL--RGAVVLIFANKQDLPGALDD--AA-VTEALELHKIKNRQW-AIFKTSAIKGEG 165 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~--~~-~~~~~~~~~~~~~~~-~~~~~S~~~~~g 165 (182)
++.+++.+++.+...|...+++... .++|+|+|+||+|+.+.... +. +.....+ ...+ .+++|||++-.+
T Consensus 87 yavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~----f~EiEtciecSA~~~~n 162 (625)
T KOG1707|consen 87 YAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIA----FAEIETCIECSALTLAN 162 (625)
T ss_pred EecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHH----hHHHHHHHhhhhhhhhh
Confidence 9999999999999888888877542 36899999999999765433 22 2222221 1111 289999999999
Q ss_pred hHHHHHHHHHHHh
Q 030149 166 LFEGLDWLSNTLK 178 (182)
Q Consensus 166 i~~l~~~l~~~~~ 178 (182)
+.|+|.....++.
T Consensus 163 ~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 163 VSELFYYAQKAVI 175 (625)
T ss_pred hHhhhhhhhheee
Confidence 9999998776543
No 236
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.81 E-value=8.2e-19 Score=122.07 Aligned_cols=154 Identities=26% Similarity=0.297 Sum_probs=108.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCeE-EEEEEcCCCC-------CCcchhhhccCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIK-FQVWDLGGQT-------SIRPYWRCYFPNTQ 86 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~-~~~~D~~g~~-------~~~~~~~~~~~~~d 86 (182)
..|.++|-|++|||||++++...+... ...|...+...+.+++.. +.+-|.||.- .+.-....+++.++
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 568999999999999999998766422 233555666677776654 9999999932 22333455678899
Q ss_pred eEEEEEeCCCc---chHHHHHHHHHHHHhh-cccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 87 AIIYVVDSSDT---ERLVIAKDEFHAILEE-EELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 87 ~ii~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
.++||+|.+.+ ..++.+...+.++-.+ ....+.|.++|+||+|+.+. .+...+.+...... --++++||+.
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea--e~~~l~~L~~~lq~---~~V~pvsA~~ 351 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA--EKNLLSSLAKRLQN---PHVVPVSAKS 351 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH--HHHHHHHHHHHcCC---CcEEEeeecc
Confidence 99999999988 6666666555544332 34457899999999999643 22222222221111 1399999999
Q ss_pred CCChHHHHHHHHHH
Q 030149 163 GEGLFEGLDWLSNT 176 (182)
Q Consensus 163 ~~gi~~l~~~l~~~ 176 (182)
++|++++.+.+.+.
T Consensus 352 ~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 352 GEGLEELLNGLREL 365 (366)
T ss_pred ccchHHHHHHHhhc
Confidence 99999999887653
No 237
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.81 E-value=7e-19 Score=124.04 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=81.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC--cc-----------------------cccccceeEEEEEEcCeEEEEEEcCCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEV--VS-----------------------TIPTIGFNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~--~~-----------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~ 71 (182)
..+|+++|++|+|||||+++++...- .. ...++......+.+++.++++|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 36899999999999999999974211 00 011233445567789999999999999
Q ss_pred CCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC
Q 030149 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 134 (182)
.++.......++.+|++|+|+|+++... .....++... . ..+.|+++++||+|+....
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~-~---~~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVC-R---LRGIPIITFINKLDREGRD 139 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHH-H---hcCCCEEEEEECCccCCCC
Confidence 9887777777899999999999976532 1122333222 2 2478999999999986553
No 238
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.81 E-value=3.7e-19 Score=134.47 Aligned_cols=153 Identities=17% Similarity=0.109 Sum_probs=98.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc------------------------------------cccccceeEEEEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS------------------------------------TIPTIGFNVETVQ 57 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~------------------------------------~~~t~~~~~~~~~ 57 (182)
....++|+++|++++|||||+++|+...-.. ..-|+......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 3677999999999999999999996432110 0012333344455
Q ss_pred EcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--
Q 030149 58 YNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD-- 135 (182)
Q Consensus 58 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-- 135 (182)
.++..+.++||||++.+.......+..+|++++|+|+..... ........+..... ..|+++++||+|+.+...
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~--~qt~~~~~l~~~lg--~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVL--DQTRRHSFIATLLG--IKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc--ccchHHHHHHHHhC--CCceEEEEEeeccccchhHH
Confidence 577899999999998887666666789999999999976421 11111111222221 257899999999974321
Q ss_pred HHHHHHHhccc--ccc-CCccEEEEecccCCCChHHHH
Q 030149 136 DAAVTEALELH--KIK-NRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 136 ~~~~~~~~~~~--~~~-~~~~~~~~~S~~~~~gi~~l~ 170 (182)
.+++...+... ... ....+++++||++|.|+.++-
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 12222222110 111 235789999999999998753
No 239
>PLN03126 Elongation factor Tu; Provisional
Probab=99.80 E-value=8.3e-19 Score=132.21 Aligned_cols=145 Identities=21% Similarity=0.166 Sum_probs=96.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCC------c---------c----cccccceeEEEEEEcCeEEEEEEcCCCCCCc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEV------V---------S----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~------~---------~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
.+.++|+++|++++|||||+++|+.... . . ..-|+......+..++..+.++|+||++++.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 5679999999999999999999985211 0 0 1113333344455578899999999999987
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCCCCH-H----HHHHHhcccccc
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPGALDD-A----AVTEALELHKIK 149 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~-~----~~~~~~~~~~~~ 149 (182)
......+..+|++++|+|+.+... ......+... .. .++| +++++||+|+.+.... + ++...+....+.
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~-~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPM-PQTKEHILLA-KQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 777777889999999999876532 2222333332 22 3566 7889999999753211 2 222222222223
Q ss_pred CCccEEEEecccCCC
Q 030149 150 NRQWAIFKTSAIKGE 164 (182)
Q Consensus 150 ~~~~~~~~~S~~~~~ 164 (182)
....+++++|+.+|.
T Consensus 234 ~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 234 GDDIPIISGSALLAL 248 (478)
T ss_pred cCcceEEEEEccccc
Confidence 346889999999884
No 240
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.80 E-value=6.9e-19 Score=131.09 Aligned_cols=147 Identities=19% Similarity=0.157 Sum_probs=95.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc------------------------------------cccccceeEEEEEEcCe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS------------------------------------TIPTIGFNVETVQYNNI 61 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~------------------------------------~~~t~~~~~~~~~~~~~ 61 (182)
++|+++|+.++|||||+++|+...-.. ..-|.......+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999996322100 01133444555556788
Q ss_pred EEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH--HHH
Q 030149 62 KFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD--AAV 139 (182)
Q Consensus 62 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~--~~~ 139 (182)
++.++||||++++.......+..+|++++|+|+.....- ..... ..+..... ..++++++||+|+.+.... +++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-qt~~~-~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLE-QTRRH-SYIASLLG--IRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcc-ccHHH-HHHHHHcC--CCcEEEEEEecccccchHHHHHHH
Confidence 999999999998877666778899999999998765321 11111 12222221 3468999999999753211 112
Q ss_pred HHHhcc--ccccCCccEEEEecccCCCChHH
Q 030149 140 TEALEL--HKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 140 ~~~~~~--~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
.+.+.. ........+++++||++|+|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 222211 01112356799999999999986
No 241
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.80 E-value=5.9e-19 Score=138.13 Aligned_cols=159 Identities=18% Similarity=0.098 Sum_probs=101.4
Q ss_pred HHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCccc------------------------------------cccc
Q 030149 6 TRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVST------------------------------------IPTI 49 (182)
Q Consensus 6 ~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~------------------------------------~~t~ 49 (182)
..++......+.++|+++|++++|||||+++|+...-... .-|.
T Consensus 13 ~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Ti 92 (632)
T PRK05506 13 LAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITI 92 (632)
T ss_pred HHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCc
Confidence 3444555557789999999999999999999975321110 0122
Q ss_pred ceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCC
Q 030149 50 GFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQD 129 (182)
Q Consensus 50 ~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
......+..++..+.++||||++++.......+..+|++++|+|+.....- .....+ .+.... ...++++++||+|
T Consensus 93 d~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~-~~~~~~--~~~~iivvvNK~D 168 (632)
T PRK05506 93 DVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHS-FIASLL--GIRHVVLAVNKMD 168 (632)
T ss_pred eeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHH-HHHHHh--CCCeEEEEEEecc
Confidence 233444555778999999999988766666668899999999999654221 111111 122221 1367899999999
Q ss_pred CCCCCC--HHHHHHHhcc--ccccCCccEEEEecccCCCChHH
Q 030149 130 LPGALD--DAAVTEALEL--HKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 130 l~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
+.+... .+++...+.. ........+++++||++|.|+++
T Consensus 169 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 169 LVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 974211 1222222211 11122345799999999999874
No 242
>PLN03127 Elongation factor Tu; Provisional
Probab=99.80 E-value=3e-18 Score=128.54 Aligned_cols=159 Identities=18% Similarity=0.180 Sum_probs=101.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC------CC------cc-------cccccceeEEEEEEcCeEEEEEEcCCCCCCc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG------EV------VS-------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~------~~------~~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
.+.++|+++|+.++|||||+++|.+. .. .. ..-|.......++.++..+.++||||+.++.
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV 138 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence 57799999999999999999999621 10 00 1114444444444467889999999999887
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCCCCH-HHHH----HHhcccccc
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPGALDD-AAVT----EALELHKIK 149 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~-~~~~----~~~~~~~~~ 149 (182)
.........+|++++|+|+.+... ......+. ++. ..+.| +|+++||+|+.+.... +.+. +.+......
T Consensus 139 ~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~-~~~---~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~ 213 (447)
T PLN03127 139 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHIL-LAR---QVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP 213 (447)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHH-HHH---HcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 766666778999999999876422 11122222 222 23677 5789999999743211 1121 111111122
Q ss_pred CCccEEEEeccc---CCCC-------hHHHHHHHHHHHh
Q 030149 150 NRQWAIFKTSAI---KGEG-------LFEGLDWLSNTLK 178 (182)
Q Consensus 150 ~~~~~~~~~S~~---~~~g-------i~~l~~~l~~~~~ 178 (182)
...++++++|+. +|.| +.+|++.+.+.++
T Consensus 214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 235789999876 4544 6788888777653
No 243
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.80 E-value=8.2e-19 Score=131.70 Aligned_cols=150 Identities=17% Similarity=0.139 Sum_probs=100.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC--Cc-------------------------c-------cccccceeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE--VV-------------------------S-------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~--~~-------------------------~-------~~~t~~~~~~~~~~~~ 60 (182)
.+.++|+++|+.++|||||+.+|+... .. . ..-|+......+.+++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 567999999999999999999986411 00 0 1113444455566688
Q ss_pred eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcch---H---HHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCC
Q 030149 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTER---L---VIAKDEFHAILEEEELRGAV-VLIFANKQDLPGA 133 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~ 133 (182)
..+.++||||+.+|.......+..+|++++|+|+..... + ......+... .. .+.| +|+++||+|....
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~~---~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-FT---LGVKQMIVCINKMDDKTV 160 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-HH---cCCCeEEEEEEccccccc
Confidence 999999999999998888888899999999999976420 1 1122222222 22 3555 6799999995321
Q ss_pred ----CCHH----HHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 134 ----LDDA----AVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 134 ----~~~~----~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
...+ ++...+.........++++++|+.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1122 2222232222233468899999999999864
No 244
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.79 E-value=3.5e-19 Score=117.12 Aligned_cols=127 Identities=28% Similarity=0.401 Sum_probs=80.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE---cCeEEEEEEcCCCCCCcchhhhc---cCCCCeEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY---NNIKFQVWDLGGQTSIRPYWRCY---FPNTQAII 89 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~---~~~~d~ii 89 (182)
+...|+++|+.|||||+|...|..+.......++..+. .... .+..+.++|+||+++.+...... ...+.+||
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 45689999999999999999999987665544443322 2222 45689999999999988755554 78899999
Q ss_pred EEEeCCC-cchHHHHHHHHHHHHhhcc--cCCCeEEEEeecCCCCCCCCHHHHHHHh
Q 030149 90 YVVDSSD-TERLVIAKDEFHAILEEEE--LRGAVVLIFANKQDLPGALDDAAVTEAL 143 (182)
Q Consensus 90 ~v~d~~~-~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~~~~~~~~~ 143 (182)
||+|++. +.......+++-.++.... ....|++|+.||.|+........+...+
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~L 137 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLL 137 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHH
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHH
Confidence 9999974 3344555555555554422 4578999999999997654454444433
No 245
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.79 E-value=1.7e-18 Score=130.00 Aligned_cols=149 Identities=15% Similarity=0.142 Sum_probs=100.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCC---------------------------cc-------cccccceeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEV---------------------------VS-------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~---------------------------~~-------~~~t~~~~~~~~~~~~ 60 (182)
.+.++|+++|+.++|||||+.+|+...- .. ..-|+......+...+
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 5679999999999999999999863110 00 1113334444555678
Q ss_pred eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHH-------HHHHHHHHHHhhcccCCC-eEEEEeecCCCCC
Q 030149 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLV-------IAKDEFHAILEEEELRGA-VVLIFANKQDLPG 132 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-~iivv~nK~Dl~~ 132 (182)
..+.++|+||+++|.......+..+|++|+|+|+.+. .++ .....+.. ... .+. ++|+++||+|+..
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~-~~~---~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALL-AFT---LGVKQMICCCNKMDATT 159 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHH-HHH---cCCCcEEEEEEcccCCc
Confidence 8999999999999999888889999999999999763 121 22222222 222 345 5788999999862
Q ss_pred C-CC-------HHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 133 A-LD-------DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 133 ~-~~-------~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
. .. .+++...+....+....++++++||++|+|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1 11 122333333223333457899999999999854
No 246
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.79 E-value=1.9e-18 Score=129.47 Aligned_cols=163 Identities=15% Similarity=0.101 Sum_probs=105.6
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc------cccccc--eeEEE----------E---EE-------------
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS------TIPTIG--FNVET----------V---QY------------- 58 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~------~~~t~~--~~~~~----------~---~~------------- 58 (182)
..+..++|+++|+..+|||||+.+|.+..... ..-|+. +.... . .+
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 34678999999999999999999998643322 111211 11100 0 00
Q ss_pred -----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 59 -----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 59 -----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
....+.++|+||++.+.......+..+|++++|+|+.++.........+ .+..... -.++++++||+|+.+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~lg--i~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVEIMK--LKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHHHcC--CCcEEEEEecccccCH
Confidence 0247899999999988877777788999999999998641111112222 2222222 3578999999999753
Q ss_pred CCHHHHHHHhcccc--ccCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 134 LDDAAVTEALELHK--IKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 134 ~~~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
...++..+.+.... ......+++++||++|.|+++|++.|.+.++
T Consensus 187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 22222222222111 0124678999999999999999999987654
No 247
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.79 E-value=7.8e-18 Score=104.88 Aligned_cols=103 Identities=24% Similarity=0.317 Sum_probs=71.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc----cccccceeEEEEEEcCeEEEEEEcCCCCCCcc---------hhhhccCCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---------YWRCYFPNT 85 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~~~~~~ 85 (182)
+|+++|.+|+|||||+|+|.+.+... ...|.......+.+.+..+.++||||...... .....+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 68999999999999999999865433 22244455566677899999999999644211 123345889
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeec
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANK 127 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK 127 (182)
|++++|+|+.++.. +.....+..+ . .++|+++|+||
T Consensus 81 d~ii~vv~~~~~~~-~~~~~~~~~l----~-~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPIT-EDDKNILREL----K-NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSH-HHHHHHHHHH----H-TTSEEEEEEES
T ss_pred CEEEEEEECCCCCC-HHHHHHHHHH----h-cCCCEEEEEcC
Confidence 99999999876321 1222222222 2 58999999998
No 248
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=7.6e-18 Score=124.71 Aligned_cols=157 Identities=20% Similarity=0.180 Sum_probs=116.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCc--c----------------cccccceeEEEEEEcC---eEEEEEEcCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVV--S----------------TIPTIGFNVETVQYNN---IKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~--~----------------~~~t~~~~~~~~~~~~---~~~~~~D~~g~~~ 73 (182)
.+..|+.|+.+...|||||..+++...-. . ..-|+......+.|.+ +.++++||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 67789999999999999999999642210 0 1113334444555555 8999999999999
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCcc
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQW 153 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (182)
|.......+.-|+++|+++|++..-.-.-....+..+ + .+..+|.|+||+|++.. +.+++....... +..+..
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf-e----~~L~iIpVlNKIDlp~a-dpe~V~~q~~~l-F~~~~~ 210 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF-E----AGLAIIPVLNKIDLPSA-DPERVENQLFEL-FDIPPA 210 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH-H----cCCeEEEeeeccCCCCC-CHHHHHHHHHHH-hcCCcc
Confidence 9999999999999999999998764333333333333 2 47889999999999876 455555444332 233444
Q ss_pred EEEEecccCCCChHHHHHHHHHHHh
Q 030149 154 AIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 154 ~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+++.+||++|.|++++++.+.+.++
T Consensus 211 ~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 211 EVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred ceEEEEeccCccHHHHHHHHHhhCC
Confidence 7999999999999999999998875
No 249
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.78 E-value=1.2e-17 Score=127.55 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=81.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc--CCCcc----------------c-------ccccceeEEEEEEcCeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM--GEVVS----------------T-------IPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~--~~~~~----------------~-------~~t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.+..+|+|+|++++|||||+++++. +.... . .-++......+.+++..+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 5678999999999999999999852 11100 0 112223345567789999999999
Q ss_pred CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
|+.++.......++.+|++|+|+|+.+... .....++. ... ..+.|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~---~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTR---LRDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHH---hcCCCEEEEEECccccC
Confidence 999888777778899999999999976421 12223332 222 24789999999999854
No 250
>COG2262 HflX GTPases [General function prediction only]
Probab=99.78 E-value=1.3e-17 Score=120.15 Aligned_cols=155 Identities=22% Similarity=0.216 Sum_probs=113.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEc-CeEEEEEEcCCCCC---------Ccchhhhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYN-NIKFQVWDLGGQTS---------IRPYWRCY 81 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~---------~~~~~~~~ 81 (182)
...+.|.++|-+++|||||+|++.+..... ...|.+.+...+.+. +..+.+-||.|.-. |.+.. ..
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTL-EE 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTL-EE 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHH-HH
Confidence 466899999999999999999999766432 566888888888885 68999999999322 22222 33
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEeccc
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
...+|+++.|+|+++|....... ....++........|+++|.||+|+..+.. ........ .+ ..+.+||+
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~-~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~---~~--~~v~iSA~ 339 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLE-AVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELERG---SP--NPVFISAK 339 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHH-HHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhhc---CC--CeEEEEec
Confidence 56799999999999995443333 333444455556799999999999875433 11111111 11 48999999
Q ss_pred CCCChHHHHHHHHHHHhh
Q 030149 162 KGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~~~ 179 (182)
+|.|+++|.+.|.+.+..
T Consensus 340 ~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 340 TGEGLDLLRERIIELLSG 357 (411)
T ss_pred cCcCHHHHHHHHHHHhhh
Confidence 999999999999998874
No 251
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.78 E-value=1.5e-17 Score=116.34 Aligned_cols=155 Identities=25% Similarity=0.244 Sum_probs=109.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCeEEEEEEcCCCC-------CCcchhhhccCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQT-------SIRPYWRCYFPN 84 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~~~~~~~~~ 84 (182)
.-..+|+++|.|++|||||++.+.+.+... ...|.......++|++..++++|+||.- ..........++
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 345799999999999999999998766433 3447778888899999999999999832 112345567899
Q ss_pred CCeEEEEEeCCCcch-HHHHHHHH----------------------------------------HHHHhh----------
Q 030149 85 TQAIIYVVDSSDTER-LVIAKDEF----------------------------------------HAILEE---------- 113 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s-~~~~~~~~----------------------------------------~~~~~~---------- 113 (182)
||++++|+|+..+.. .+.+...+ ..+++.
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999976443 22222211 111110
Q ss_pred --------------cccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 114 --------------EELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 114 --------------~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
....=+|.+.|.||+|+.+....+.+.+.. .++.+||..+.|+++|.+.+.+.+.-
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L~l 290 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVLGL 290 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhhCe
Confidence 000126899999999998643333332222 48999999999999999999988754
No 252
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.77 E-value=1e-17 Score=118.75 Aligned_cols=110 Identities=21% Similarity=0.207 Sum_probs=81.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc---------------------cccccceeEEEEEEcCeEEEEEEcCCCCCCcch
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS---------------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~---------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
+|+++|++|+|||||+++++...... ...+.......+.+.+..+.+|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 68999999999999999997432110 122334445667778899999999999888777
Q ss_pred hhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 78 WRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
+...++.+|++++|+|+++...... ...+.... ..+.|.++++||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~----~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFAD----EAGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHH----HcCCCEEEEEECCccCCC
Confidence 8888999999999999987654322 22233222 246899999999998765
No 253
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.77 E-value=2.7e-17 Score=111.59 Aligned_cols=160 Identities=14% Similarity=0.075 Sum_probs=100.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCccc-----ccccceeEEEEEEcCeEEEEEEcCCCCCCcc-----------hhhhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVST-----IPTIGFNVETVQYNNIKFQVWDLGGQTSIRP-----------YWRCY 81 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~~~ 81 (182)
++|+++|.+|+|||||+|++++.+.... ..|...........+..+.++||||..+... .....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4899999999999999999998765432 2355566666677889999999999654321 11223
Q ss_pred cCCCCeEEEEEeCCCcc-hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhc---cccccCCccEEEE
Q 030149 82 FPNTQAIIYVVDSSDTE-RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALE---LHKIKNRQWAIFK 157 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 157 (182)
...+|++++|+|+.+.. ......+++...+. .....++++++|++|...+...++...... +...+..+-.+..
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg--~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFG--EKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhC--hHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 46789999999987622 11122223333222 112357899999999765543333211110 0011111222333
Q ss_pred ec-----ccCCCChHHHHHHHHHHHhh
Q 030149 158 TS-----AIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 158 ~S-----~~~~~gi~~l~~~l~~~~~~ 179 (182)
.+ +..+.++++|++.+.+.+.+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 33 56678899999999998876
No 254
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.76 E-value=4.5e-20 Score=118.72 Aligned_cols=161 Identities=20% Similarity=0.244 Sum_probs=124.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc---CeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
++++|+|.-|+|||+++.+.....+.. |..|++... ...+++ -.++++||..|++++..+..-+++.+++..+|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 789999999999999999999888877 777887432 233443 36789999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhc---ccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEE---ELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
||+++..+|+....|..++-... .....|+++..||||..... ..+....+.....++.-...+++|++.+.+++|
T Consensus 106 fdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a-~~~~~~~~d~f~kengf~gwtets~Kenkni~E 184 (229)
T KOG4423|consen 106 FDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSA-KNEATRQFDNFKKENGFEGWTETSAKENKNIPE 184 (229)
T ss_pred EEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHh-hhhhHHHHHHHHhccCccceeeeccccccChhH
Confidence 99999999999999988875542 22346899999999975332 122122222222233333499999999999999
Q ss_pred HHHHHHHHHhh
Q 030149 169 GLDWLSNTLKS 179 (182)
Q Consensus 169 l~~~l~~~~~~ 179 (182)
+-..+.+++..
T Consensus 185 a~r~lVe~~lv 195 (229)
T KOG4423|consen 185 AQRELVEKILV 195 (229)
T ss_pred HHHHHHHHHHh
Confidence 99999887653
No 255
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.76 E-value=2.4e-17 Score=116.03 Aligned_cols=159 Identities=24% Similarity=0.274 Sum_probs=106.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEE-cCeEEEEEEcCCCC-------CCcchhhhccCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQT-------SIRPYWRCYFPNTQ 86 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~g~~-------~~~~~~~~~~~~~d 86 (182)
--|.++|-|++|||||++.+...+.-. ...|...+...+.. ....|.+-|.||.- ...-....+++.+.
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 357899999999999999998765432 23355566666665 66779999999932 12223445677899
Q ss_pred eEEEEEeCCCcch---HHHHHHHHHHHHhh-cccCCCeEEEEeecCCCCCCC-CHHHHHHHhccccccCCccE-EEEecc
Q 030149 87 AIIYVVDSSDTER---LVIAKDEFHAILEE-EELRGAVVLIFANKQDLPGAL-DDAAVTEALELHKIKNRQWA-IFKTSA 160 (182)
Q Consensus 87 ~ii~v~d~~~~~s---~~~~~~~~~~~~~~-~~~~~~~iivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~S~ 160 (182)
++++|+|++..+. .++......++..+ ....++|.++|+||+|+..+. ..+...+.+. +...+. .+.+|+
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~----~~~~~~~~~~ISa 315 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALA----EALGWEVFYLISA 315 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHH----HhcCCCcceeeeh
Confidence 9999999976553 44443333333322 444689999999999976432 2233333332 222222 222999
Q ss_pred cCCCChHHHHHHHHHHHhhc
Q 030149 161 IKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~~ 180 (182)
.+++|++++...+.+.+.+.
T Consensus 316 ~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 316 LTREGLDELLRALAELLEET 335 (369)
T ss_pred hcccCHHHHHHHHHHHHHHh
Confidence 99999999999999988764
No 256
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.76 E-value=2e-17 Score=130.71 Aligned_cols=143 Identities=17% Similarity=0.059 Sum_probs=96.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCc--c-------------------cccccceeEEEEEEcCeEEEEEEcCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVV--S-------------------TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~--~-------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
.+..||+|+|++++|||||+++|+...-. . ..-|+......+.+++..+.+|||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 56779999999999999999999632110 0 11134455667778999999999999998
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCcc
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQW 153 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (182)
+...+...++.+|++++|+|+.+...... ...+.... ..+.|+++++||+|+.... .+...+.+..........
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~----~~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l~~~~~~ 161 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQAN----RYEVPRIAFVNKMDKTGAN-FLRVVNQIKQRLGANAVP 161 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHHH----HcCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCcee
Confidence 88888888999999999999987544322 22333322 2468999999999998643 333333332221112222
Q ss_pred EEEEecccCC
Q 030149 154 AIFKTSAIKG 163 (182)
Q Consensus 154 ~~~~~S~~~~ 163 (182)
..+++|+..+
T Consensus 162 ~~ipis~~~~ 171 (689)
T TIGR00484 162 IQLPIGAEDN 171 (689)
T ss_pred EEeccccCCC
Confidence 2556665544
No 257
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.76 E-value=6.8e-18 Score=115.74 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=78.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCc--c-----------------cccccceeEEEEEEc----------CeEEEEEEc
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVV--S-----------------TIPTIGFNVETVQYN----------NIKFQVWDL 68 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~--~-----------------~~~t~~~~~~~~~~~----------~~~~~~~D~ 68 (182)
.+|+++|+.++|||||+.+|+...-. . +.-|+......+.+. +..+++|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 37999999999999999999743211 0 011222333333343 678999999
Q ss_pred CCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 69 GGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 69 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
||+.++......+++.+|++++|+|+.+..+... ...+..... .+.|+++++||+|+.
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 9999999999999999999999999987654332 223333222 367999999999975
No 258
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.8e-17 Score=108.43 Aligned_cols=163 Identities=26% Similarity=0.366 Sum_probs=119.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccC---CCCeEEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFP---NTQAIIY 90 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~d~ii~ 90 (182)
+.+...|+++|+.+||||+|.-.+..+......+++..+.....++.....++|.||+++.+.....++. .+-++++
T Consensus 35 rs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 35 RSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred hccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 3555789999999999999999999887777777888888888888888999999999999888777777 6899999
Q ss_pred EEeCCCcc-hHHHHHHHHHHHHhhc--ccCCCeEEEEeecCCCCCCCCHHHHHHHhccc---------------------
Q 030149 91 VVDSSDTE-RLVIAKDEFHAILEEE--ELRGAVVLIFANKQDLPGALDDAAVTEALELH--------------------- 146 (182)
Q Consensus 91 v~d~~~~~-s~~~~~~~~~~~~~~~--~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~--------------------- 146 (182)
|+|..... .......++-+++... .....|++++.||.|+.-....+.+.+.+...
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~ 194 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK 194 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 99975432 2333334444443332 34568999999999996543443332222110
Q ss_pred --------------cccCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 147 --------------KIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 147 --------------~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
..+...+.|.++|++++ +++++-+|+.+.+
T Consensus 195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 11113566999999999 8999999987653
No 259
>PRK12739 elongation factor G; Reviewed
Probab=99.76 E-value=2e-17 Score=130.62 Aligned_cols=114 Identities=19% Similarity=0.157 Sum_probs=84.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCC--------c-------------ccccccceeEEEEEEcCeEEEEEEcCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEV--------V-------------STIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~--------~-------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
.+..+|+|+|++++|||||+++|+...- . ...-|+......+.+++..+.++||||+.+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 5678999999999999999999964210 0 112245555667778999999999999988
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
+...+...++.+|++++|+|+.+...-. ....+... ...+.|.++++||+|+...
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~q-t~~i~~~~----~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQ-SETVWRQA----DKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHH----HHcCCCEEEEEECCCCCCC
Confidence 8788888899999999999997653211 12222222 2246899999999998754
No 260
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=2.9e-17 Score=120.40 Aligned_cols=165 Identities=18% Similarity=0.207 Sum_probs=108.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccc----eeEEEEEEcCeEEEEEEcCCCCC-Ccc--------hhhhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG----FNVETVQYNNIKFQVWDLGGQTS-IRP--------YWRCY 81 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~-~~~--------~~~~~ 81 (182)
+..++|+++|+||+|||||+|+|...+.....|..| .-...++.++.++.+.||+|..+ -.. -....
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 456999999999999999999999988777666444 44555667999999999999654 111 12344
Q ss_pred cCCCCeEEEEEeCCC--cchHHHHHHHHHHHHhh-----cccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCcc
Q 030149 82 FPNTQAIIYVVDSSD--TERLVIAKDEFHAILEE-----EELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQW 153 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~--~~s~~~~~~~~~~~~~~-----~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~ 153 (182)
+..+|++++|+|+.. .++-..+...+...-.. ......|++++.||+|+..+... ......+.+. ......
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~ 424 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVF 424 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCccc
Confidence 678999999999933 22222222222222111 22234789999999999765211 1111111111 112233
Q ss_pred E-EEEecccCCCChHHHHHHHHHHHhhc
Q 030149 154 A-IFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 154 ~-~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
+ ..++|+++++|++.|.+.+.+.+...
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 3 56699999999999999998887654
No 261
>PRK00007 elongation factor G; Reviewed
Probab=99.74 E-value=5e-17 Score=128.34 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=82.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc--CCC------c-------------ccccccceeEEEEEEcCeEEEEEEcCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM--GEV------V-------------STIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~--~~~------~-------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
.+..||+++|++++|||||+++|+. +.. . ...-|+......+.+.+..+.++||||+.+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 5678999999999999999999963 110 0 011244455566777899999999999988
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
+.......++.+|++++|+|+...-... ....+.... ..+.|.++++||+|+...
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~~q-t~~~~~~~~----~~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVEPQ-SETVWRQAD----KYKVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcchh-hHHHHHHHH----HcCCCEEEEEECCCCCCC
Confidence 7777777788999999999987653222 122333332 246889999999998754
No 262
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=2.3e-17 Score=118.80 Aligned_cols=152 Identities=18% Similarity=0.203 Sum_probs=103.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC------------------------Ccc----------cccccceeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE------------------------VVS----------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~------------------------~~~----------~~~t~~~~~~~~~~~~ 60 (182)
...++++++|+..+|||||+-+|+... +.. ..-|+......++-+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 578999999999999999999986211 000 1124444455555577
Q ss_pred eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc---hH--HHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC
Q 030149 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE---RL--VIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD 135 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 135 (182)
..+.++|+||+.+|...+......+|+.|+|+|+...+ +| .........+...++ -..+|+++||+|+.+. +
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~lIVavNKMD~v~w-d 161 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQLIVAVNKMDLVSW-D 161 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--CceEEEEEEccccccc-C
Confidence 88999999999999988888889999999999998763 11 112222222223322 4678999999999863 3
Q ss_pred HHHHH-------HHhccccccCCccEEEEecccCCCChHHH
Q 030149 136 DAAVT-------EALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 136 ~~~~~-------~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
.+.+. .............+|+++|+..|.|+.+.
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 32222 21112222334678999999999997653
No 263
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=5.1e-17 Score=111.46 Aligned_cols=164 Identities=19% Similarity=0.278 Sum_probs=111.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcccc---cccc-eeEEEEEEcCeEEEEEEcCCCCC-------Ccchhhhcc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTI---PTIG-FNVETVQYNNIKFQVWDLGGQTS-------IRPYWRCYF 82 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~---~t~~-~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~ 82 (182)
..++++|+++|.+|+||||++|+++.+...+.. .+.. .+.....++...+.+||+||-++ ++.....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 468899999999999999999999976554422 1222 33334455779999999999654 555667788
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH---------HHHHHHhc-----cccc
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD---------AAVTEALE-----LHKI 148 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~---------~~~~~~~~-----~~~~ 148 (182)
...|.+++++++.++.--. ....+.++.... -+.++++++|.+|...+... ..+.+... ....
T Consensus 116 ~~~DLvL~l~~~~draL~~-d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 116 PKLDLVLWLIKADDRALGT-DEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhccEEEEeccCCCccccC-CHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999998775211 123444443322 24899999999998655211 11111110 0111
Q ss_pred cCCccEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 149 KNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 149 ~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
..+-.|++..+...+.|++++...++..++..
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 12244688899999999999999999887643
No 264
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.72 E-value=6.1e-16 Score=111.26 Aligned_cols=154 Identities=25% Similarity=0.233 Sum_probs=96.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCc-------ccccccceeEEEE-------------------E-EcCeEEEEEEcCCC-
Q 030149 20 ILVLGLDNAGKTTILYRLQMGEVV-------STIPTIGFNVETV-------------------Q-YNNIKFQVWDLGGQ- 71 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~~~~-------~~~~t~~~~~~~~-------------------~-~~~~~~~~~D~~g~- 71 (182)
|+++|.|++|||||++++.+.... ...|+.+...... . .....+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987642 2334444332211 0 12367999999996
Q ss_pred ---CCCcchhh---hccCCCCeEEEEEeCCCc-------------chHHHH-------HHH-------------------
Q 030149 72 ---TSIRPYWR---CYFPNTQAIIYVVDSSDT-------------ERLVIA-------KDE------------------- 106 (182)
Q Consensus 72 ---~~~~~~~~---~~~~~~d~ii~v~d~~~~-------------~s~~~~-------~~~------------------- 106 (182)
++...+.. ..++++|++++|+|+... +..... ..|
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33343333 358999999999999631 111100 000
Q ss_pred ---------------------HHHHHhh---------------------cccCCCeEEEEeecCCCCCCCCHHHHHHHhc
Q 030149 107 ---------------------FHAILEE---------------------EELRGAVVLIFANKQDLPGALDDAAVTEALE 144 (182)
Q Consensus 107 ---------------------~~~~~~~---------------------~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~ 144 (182)
+..+++. .....+|+++++||+|+... ++..+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~---~~~~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDA---ENNISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccCh---HHHHHHHH
Confidence 0000000 01235799999999998533 22222222
Q ss_pred cccccCCccEEEEecccCCCChHHHHH-HHHHHHhh
Q 030149 145 LHKIKNRQWAIFKTSAIKGEGLFEGLD-WLSNTLKS 179 (182)
Q Consensus 145 ~~~~~~~~~~~~~~S~~~~~gi~~l~~-~l~~~~~~ 179 (182)
. .....+++++||+.+.+++++.+ .+.+.++.
T Consensus 238 ~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 238 L---KYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred h---hCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 1 22345699999999999999998 58888754
No 265
>PRK09866 hypothetical protein; Provisional
Probab=99.71 E-value=1.1e-15 Score=116.50 Aligned_cols=112 Identities=15% Similarity=0.104 Sum_probs=72.7
Q ss_pred eEEEEEEcCCCCCC-----cchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC
Q 030149 61 IKFQVWDLGGQTSI-----RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD 135 (182)
Q Consensus 61 ~~~~~~D~~g~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 135 (182)
..+.|+||||.... .......+..+|++++|+|+.+..+..+ ..+...+... ..+.|+++|+||+|+.....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~-~K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAV-GQSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhc-CCCCCEEEEEEcccCCCccc
Confidence 46789999996542 2234557899999999999977533332 2222322221 11359999999999864222
Q ss_pred --HHHHHHHhccc--cccCCccEEEEecccCCCChHHHHHHHHH
Q 030149 136 --DAAVTEALELH--KIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 136 --~~~~~~~~~~~--~~~~~~~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
.+.+.+..... ........+|++||+.|.|++++.+.|..
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 34444433211 11223446999999999999999998875
No 266
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.71 E-value=5.1e-16 Score=112.23 Aligned_cols=134 Identities=25% Similarity=0.353 Sum_probs=101.8
Q ss_pred ccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc----------chHHHHHHHHHHHHhhcc
Q 030149 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT----------ERLVIAKDEFHAILEEEE 115 (182)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~ 115 (182)
.||.|.....+.+++..+.+||++|+...+..|..++.+++++++|+|.++. ..+.+....+..+++...
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 4566777778888999999999999999999999999999999999999874 567777788888888777
Q ss_pred cCCCeEEEEeecCCCCCC------------------CCHHHHHHHhccccc-----cCCccEEEEecccCCCChHHHHHH
Q 030149 116 LRGAVVLIFANKQDLPGA------------------LDDAAVTEALELHKI-----KNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 116 ~~~~~iivv~nK~Dl~~~------------------~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
..++|+++++||.|+..+ .+.+.....+..++. ....+....++|.+.+++..+|+.
T Consensus 226 ~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~ 305 (317)
T cd00066 226 FANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDA 305 (317)
T ss_pred ccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHH
Confidence 678999999999996321 122222222221111 123455677899999999999998
Q ss_pred HHHHHhh
Q 030149 173 LSNTLKS 179 (182)
Q Consensus 173 l~~~~~~ 179 (182)
+.+.+..
T Consensus 306 v~~~i~~ 312 (317)
T cd00066 306 VKDIILQ 312 (317)
T ss_pred HHHHHHH
Confidence 8887754
No 267
>PRK12740 elongation factor G; Reviewed
Probab=99.71 E-value=2.4e-16 Score=124.57 Aligned_cols=106 Identities=20% Similarity=0.162 Sum_probs=78.8
Q ss_pred EcCCCCCHHHHHHHHhcCCCc---------------------ccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhc
Q 030149 23 LGLDNAGKTTILYRLQMGEVV---------------------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCY 81 (182)
Q Consensus 23 ~G~~~~GKtsli~~~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 81 (182)
+|++++|||||+++|+...-. ....|++.....+.+.+..+.+|||||+.++...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999532110 01224555566777899999999999998887778888
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
+..+|++++|+|++........ ..+.... ..+.|+++|+||+|+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~----~~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAE----KYGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHH----HcCCCEEEEEECCCCCCC
Confidence 9999999999999876544322 2333322 246899999999998754
No 268
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.70 E-value=3.6e-17 Score=120.11 Aligned_cols=164 Identities=19% Similarity=0.216 Sum_probs=119.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCc--cc-ccccceeEEEEEEcCeEEEEEEcCCCCCC-----cchh----hhc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV--ST-IPTIGFNVETVQYNNIKFQVWDLGGQTSI-----RPYW----RCY 81 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~--~~-~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~----~~~ 81 (182)
......++++|.|++|||||++.+...... +| .+|.+.-.+.+.+...+++++||||.-+. ..+. ...
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 477889999999999999999999766543 33 34666778888889999999999994322 1111 111
Q ss_pred cCCCCeEEEEEeCCCcc--hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEec
Q 030149 82 FPNTQAIIYVVDSSDTE--RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+--.+++|++|++... |.....+.+..+.-. ..++|+|+|+||+|+..+.+.++-.+.+-+......+++++++|
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL--FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL--FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH--hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 22347899999998754 444555555555333 35899999999999987766655555554444455668899999
Q ss_pred ccCCCChHHHHHHHHHHHhh
Q 030149 160 AIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~~ 179 (182)
+.+.+|+-++....++.+..
T Consensus 323 ~~~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACEALLA 342 (620)
T ss_pred ccchhceeeHHHHHHHHHHH
Confidence 99999999988888877654
No 269
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.69 E-value=8.7e-16 Score=111.84 Aligned_cols=134 Identities=23% Similarity=0.326 Sum_probs=101.0
Q ss_pred ccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc----------chHHHHHHHHHHHHhhcc
Q 030149 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT----------ERLVIAKDEFHAILEEEE 115 (182)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~ 115 (182)
.||.|+....+.+++..+.+||++|+...+..|..++.+++++|+|+|.++. ..+.+....+..+++...
T Consensus 169 ~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~ 248 (342)
T smart00275 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW 248 (342)
T ss_pred CCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence 3466777777888899999999999999999999999999999999999873 467778888888888777
Q ss_pred cCCCeEEEEeecCCCCCC-----------------CCHHHHHHHhcc----ccc--cCCccEEEEecccCCCChHHHHHH
Q 030149 116 LRGAVVLIFANKQDLPGA-----------------LDDAAVTEALEL----HKI--KNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 116 ~~~~~iivv~nK~Dl~~~-----------------~~~~~~~~~~~~----~~~--~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
..+.|+++++||.|+... .+.+...+.+.. ... ....+-...++|.+-.++..+|+.
T Consensus 249 ~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~ 328 (342)
T smart00275 249 FANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDA 328 (342)
T ss_pred ccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHH
Confidence 778999999999997321 111222222211 111 123455678889999999999998
Q ss_pred HHHHHhh
Q 030149 173 LSNTLKS 179 (182)
Q Consensus 173 l~~~~~~ 179 (182)
+.+.+..
T Consensus 329 v~~~I~~ 335 (342)
T smart00275 329 VKDIILQ 335 (342)
T ss_pred HHHHHHH
Confidence 8877654
No 270
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.69 E-value=3.6e-16 Score=110.85 Aligned_cols=140 Identities=15% Similarity=0.203 Sum_probs=81.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCccc-----------ccccceeEEE--EEEcC--eEEEEEEcCCCCCCcc----
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVST-----------IPTIGFNVET--VQYNN--IKFQVWDLGGQTSIRP---- 76 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~-----------~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~---- 76 (182)
-.++|+++|++|+|||||+|++++..+... .+|....... +...+ .++.+|||||..+...
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999998776442 2233333322 23334 5799999999543211
Q ss_pred ----------------------hhhhccC--CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 77 ----------------------YWRCYFP--NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 77 ----------------------~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
.+...+. .+|+++|+++.+...-.......+..+ . ...|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l----~-~~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRL----S-KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHH----h-ccCCEEEEEECCCcCC
Confidence 0112222 478899999976522111112222222 2 2689999999999965
Q ss_pred CCCHHHHHHHhccccccCCccEEEEeccc
Q 030149 133 ALDDAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
..+.....+... ......++++|.....
T Consensus 158 ~~e~~~~k~~i~-~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 158 PEELKEFKQRIM-EDIEEHNIKIYKFPED 185 (276)
T ss_pred HHHHHHHHHHHH-HHHHHcCCceECCCCC
Confidence 323322222222 2223345566665543
No 271
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=9e-16 Score=112.32 Aligned_cols=158 Identities=18% Similarity=0.147 Sum_probs=114.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc------------------cccccceeEEEEEE-----cCeEEEEEEcCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS------------------TIPTIGFNVETVQY-----NNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~------------------~~~t~~~~~~~~~~-----~~~~~~~~D~~g~ 71 (182)
.+..|..++.+...|||||..+++.....- +.-|+..+...+.| ..+.++++||||+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 455788999999999999999997432110 11244444455555 3488999999999
Q ss_pred CCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCC
Q 030149 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNR 151 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 151 (182)
-+|.-.....+..|.+.++++|++..-.-..+...+..+- .+.-++-|+||+||+.. +++.+.+...... ...
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~A-dpervk~eIe~~i-Gid 159 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAA-DPERVKQEIEDII-GID 159 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCC-CHHHHHHHHHHHh-CCC
Confidence 9998888888999999999999987644344444444442 47889999999999865 5555555444221 222
Q ss_pred ccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 152 QWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 152 ~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
....+.+||++|.||+++++.+.+.++.
T Consensus 160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 160 ASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred cchheeEecccCCCHHHHHHHHHhhCCC
Confidence 3348999999999999999999988753
No 272
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.67 E-value=5.9e-16 Score=107.30 Aligned_cols=115 Identities=15% Similarity=0.028 Sum_probs=63.0
Q ss_pred EEEEEEcCCCCCCcchhhhcc--------CCCCeEEEEEeCCCcchHHHH-HHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 62 KFQVWDLGGQTSIRPYWRCYF--------PNTQAIIYVVDSSDTERLVIA-KDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 62 ~~~~~D~~g~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
.+.++|||||-++...+.... ...-++++++|+....+-... ..++... ......+.|.+.|+||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~-s~~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSL-SIMLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHH-HHHHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHH-HHHhhCCCCEEEeeeccCccc
Confidence 799999999988766554332 345688999998654432222 2222221 222224799999999999986
Q ss_pred CCC--------------------HHHHHHHhccccccCCcc-EEEEecccCCCChHHHHHHHHHHH
Q 030149 133 ALD--------------------DAAVTEALELHKIKNRQW-AIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 133 ~~~--------------------~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
+.. .....+.+.+........ +++++|+.+++|+++++..+-+.+
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 210 122222222222233344 799999999999999999887765
No 273
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.67 E-value=2.8e-16 Score=95.08 Aligned_cols=138 Identities=26% Similarity=0.268 Sum_probs=92.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCC----CCcchhhhccCCCCeEEEEEeC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQT----SIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
+++++|..|+|||||.+++-+..... ..|..+. +.+ =-.+||||.. ...........++|+++++-.+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly-kKTQAve-----~~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a 74 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY-KKTQAVE-----FND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA 74 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh-cccceee-----ccC--ccccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence 78999999999999999998665432 1122111 111 0135999943 2222334456789999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
+++++. ....+..+ ..+|+|-+++|.|+.++.+.....+.+.+.. .-++|++|+.++.|++++++.|.
T Consensus 75 nd~~s~--f~p~f~~~------~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG----a~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 75 NDPESR--FPPGFLDI------GVKKVIGVVTKADLAEDADISLVKRWLREAG----AEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred cCcccc--CCcccccc------cccceEEEEecccccchHhHHHHHHHHHHcC----CcceEEEeccCcccHHHHHHHHH
Confidence 888642 11222222 2466999999999997655555555554433 22499999999999999999886
Q ss_pred HH
Q 030149 175 NT 176 (182)
Q Consensus 175 ~~ 176 (182)
..
T Consensus 143 ~~ 144 (148)
T COG4917 143 SL 144 (148)
T ss_pred hh
Confidence 53
No 274
>PRK13768 GTPase; Provisional
Probab=99.67 E-value=1.2e-15 Score=107.09 Aligned_cols=118 Identities=16% Similarity=0.097 Sum_probs=74.8
Q ss_pred eEEEEEEcCCCCCCc---chhhhc---cCC--CCeEEEEEeCCCcchHHHH-HHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 61 IKFQVWDLGGQTSIR---PYWRCY---FPN--TQAIIYVVDSSDTERLVIA-KDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~---~~~~~~---~~~--~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
..+.+||+||+.+.. ..+..+ +.. ++++++++|+....+.... ..++...... ...+.|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~-~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ-LRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH-HHcCCCEEEEEEhHhhc
Confidence 379999999976543 222212 222 8999999999654432222 2222221111 12479999999999998
Q ss_pred CCCCHHHHHHHhcc-------------------------ccccCCccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 132 GALDDAAVTEALEL-------------------------HKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 132 ~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
...+.+...+.+.. ........+++++|+++++|+++++++|.+.+..
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 66554444333321 0011223579999999999999999999988754
No 275
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.66 E-value=1.1e-15 Score=104.88 Aligned_cols=169 Identities=20% Similarity=0.194 Sum_probs=103.0
Q ss_pred hhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCc----ccccccc---------ee---EEEEEE----------------
Q 030149 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVV----STIPTIG---------FN---VETVQY---------------- 58 (182)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~----~~~~t~~---------~~---~~~~~~---------------- 58 (182)
+...+++.-|+|+|..|||||||+++|...-.. +|.-..+ .+ ..+++|
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 456688899999999999999999999632111 1100000 00 000100
Q ss_pred ---------------------cCeEEEEEEcCCCCCCcchhh------hc--cCCCCeEEEEEeCCCcchHHHHHHHHHH
Q 030149 59 ---------------------NNIKFQVWDLGGQTSIRPYWR------CY--FPNTQAIIYVVDSSDTERLVIAKDEFHA 109 (182)
Q Consensus 59 ---------------------~~~~~~~~D~~g~~~~~~~~~------~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~ 109 (182)
...++.++||||+-+...... .. ....-+++|++|..+..+-.-....+..
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 234689999999765433221 11 1235788999997543322222223333
Q ss_pred HHhhcccCCCeEEEEeecCCCCCCCCHHHH-------HHHhcc-c---------------cccCCccEEEEecccCCCCh
Q 030149 110 ILEEEELRGAVVLIFANKQDLPGALDDAAV-------TEALEL-H---------------KIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 110 ~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~-------~~~~~~-~---------------~~~~~~~~~~~~S~~~~~gi 166 (182)
....+.....|.|++.||+|+.......+. .+.+.. . .....+++.+.+|+.+|.|.
T Consensus 173 AcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ 252 (366)
T KOG1532|consen 173 ACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF 252 (366)
T ss_pred HHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence 333344468999999999999876443222 222221 0 00124778999999999999
Q ss_pred HHHHHHHHHHHhh
Q 030149 167 FEGLDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (182)
+++|..+.+.+.+
T Consensus 253 ddf~~av~~~vdE 265 (366)
T KOG1532|consen 253 DDFFTAVDESVDE 265 (366)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887765
No 276
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.65 E-value=3.7e-15 Score=107.42 Aligned_cols=110 Identities=19% Similarity=0.155 Sum_probs=69.4
Q ss_pred cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHH
Q 030149 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA 138 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~ 138 (182)
.+..+.++||+|...-... ....+|.++++.+....+....... .+++ ...++|+||+|+......+.
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E------~aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME------LADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh------hhheEEeehhcccchhHHHH
Confidence 3578999999996633222 3557999999987544443333221 1222 22389999999875433333
Q ss_pred HHH----HhccccccC--CccEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 139 VTE----ALELHKIKN--RQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 139 ~~~----~~~~~~~~~--~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
... .+....... ...|++.+||+++.|++++++.+.+.+..+
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 322 222211111 124799999999999999999999887643
No 277
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.64 E-value=4.4e-15 Score=101.76 Aligned_cols=160 Identities=16% Similarity=0.080 Sum_probs=95.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCccc-----ccccceeEEEEEEcCeEEEEEEcCCCCCCcc-----------hhhhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVST-----IPTIGFNVETVQYNNIKFQVWDLGGQTSIRP-----------YWRCY 81 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~~~ 81 (182)
++|+++|.+||||||++|.+++...... ..|..+........+..+.++||||-.+... .....
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 5899999999999999999998876442 2255566666678999999999999432211 11123
Q ss_pred cCCCCeEEEEEeCCCcch-HHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHH-----HhccccccCCccEE
Q 030149 82 FPNTQAIIYVVDSSDTER-LVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTE-----ALELHKIKNRQWAI 155 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~~~ 155 (182)
....|++++|++..+... -.....++..++... ....++|+.|..|...+...++..+ .+. ...+..+-+|
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~-~li~~c~~R~ 157 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE--IWKHTIVVFTHADELEDDSLEDYLKKESNEALQ-ELIEKCGGRY 157 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG--GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHH-HHHHHTTTCE
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH--HHhHhhHHhhhccccccccHHHHHhccCchhHh-HHhhhcCCEE
Confidence 467899999999873321 112223344443322 2356899999999776655433333 111 1122223346
Q ss_pred EEeccc------CCCChHHHHHHHHHHHhhc
Q 030149 156 FKTSAI------KGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 156 ~~~S~~------~~~gi~~l~~~l~~~~~~~ 180 (182)
...+.+ ....+.+|++.+-+.+.+.
T Consensus 158 ~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 158 HVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp EECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 655555 3456888888887777654
No 278
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.64 E-value=3e-15 Score=109.39 Aligned_cols=160 Identities=19% Similarity=0.214 Sum_probs=112.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCC--ccc-------cc----------ccceeEEEEEEcCeEEEEEEcCCCCCCc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEV--VST-------IP----------TIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~--~~~-------~~----------t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
..-.||+|+.+...|||||+..++.+.- ... .. |+-...-.+.|++.+++++||||+.+|.
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG 82 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG 82 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc
Confidence 3456899999999999999999985432 111 11 1122233467789999999999999999
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHH---hccc--cccC
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEA---LELH--KIKN 150 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~---~~~~--~~~~ 150 (182)
......+.-+|.+++++|+.+.. ....+-.+.+.+. .+.+.|+|+||+|.+...-.+-+.+. +... ....
T Consensus 83 GEVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQ 157 (603)
T COG1217 83 GEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQ 157 (603)
T ss_pred chhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhh
Confidence 99999999999999999997643 1222333333333 46778899999998765333333222 2211 2234
Q ss_pred CccEEEEecccCCC----------ChHHHHHHHHHHHhh
Q 030149 151 RQWAIFKTSAIKGE----------GLFEGLDWLSNTLKS 179 (182)
Q Consensus 151 ~~~~~~~~S~~~~~----------gi~~l~~~l~~~~~~ 179 (182)
..+|++..|+..|. ++..||+.|.+.++.
T Consensus 158 LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 158 LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 67889999998865 688899988887653
No 279
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.64 E-value=1.7e-14 Score=106.77 Aligned_cols=78 Identities=27% Similarity=0.270 Sum_probs=53.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc--c-ccccceeEEEEE------------------------EcCeEEEEEEcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS--T-IPTIGFNVETVQ------------------------YNNIKFQVWDLGG 70 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~--~-~~t~~~~~~~~~------------------------~~~~~~~~~D~~g 70 (182)
++|+++|.|++|||||+|++.+..... + ..|...+..... .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999999776532 2 123233322211 1236789999999
Q ss_pred CC----CCcchhh---hccCCCCeEEEEEeCC
Q 030149 71 QT----SIRPYWR---CYFPNTQAIIYVVDSS 95 (182)
Q Consensus 71 ~~----~~~~~~~---~~~~~~d~ii~v~d~~ 95 (182)
.. ....+.. ..++.+|++++|+|..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 2233333 3488999999999996
No 280
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.63 E-value=4.8e-15 Score=102.39 Aligned_cols=141 Identities=16% Similarity=0.072 Sum_probs=86.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
.....|+++|.+|+|||||++.+.+..... .....+. .......+.++.++||||.. .. .....+.+|++++++|
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVllviD 112 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLLLID 112 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HH-HHHHHHhcCEEEEEEe
Confidence 556789999999999999999998642211 2222221 11122367889999999854 22 2334678999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeE-EEEeecCCCCCCCC-HHHHHHHhccccc--cCCccEEEEecccCCC
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVV-LIFANKQDLPGALD-DAAVTEALELHKI--KNRQWAIFKTSAIKGE 164 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~i-ivv~nK~Dl~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~S~~~~~ 164 (182)
+........ ..+...+.. .+.|. ++|+||+|+..+.. .++..+.+..... ...+.+++.+||+++-
T Consensus 113 a~~~~~~~~--~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 113 ASFGFEMET--FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred cCcCCCHHH--HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 976543221 122222222 35664 55999999974322 2333333332111 2245679999999874
No 281
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.62 E-value=2e-14 Score=100.25 Aligned_cols=119 Identities=15% Similarity=0.130 Sum_probs=75.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccc----ccccceeEEEEEEcCeEEEEEEcCCCCCCcc---h-------hhh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST----IPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---Y-------WRC 80 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~-------~~~ 80 (182)
...++|+++|.+|+|||||+|++++...... ..|...........+..+.++||||..+... . ...
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~ 108 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKR 108 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence 6779999999999999999999998765432 2233444444556788999999999665421 1 112
Q ss_pred ccC--CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcc-cCCCeEEEEeecCCCCCC
Q 030149 81 YFP--NTQAIIYVVDSSDTERLVIAKDEFHAILEEEE-LRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 81 ~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~ 133 (182)
++. ..|++++|..++....-......+..+....+ .-..++++|.||+|...+
T Consensus 109 ~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 109 YLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 232 57888888766543211121233333322211 112579999999998644
No 282
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.62 E-value=1.2e-14 Score=117.58 Aligned_cols=142 Identities=21% Similarity=0.172 Sum_probs=91.6
Q ss_pred CCHHHHHHHHhcCCCccc-----ccccceeEEEEEE----------------cCeEEEEEEcCCCCCCcchhhhccCCCC
Q 030149 28 AGKTTILYRLQMGEVVST-----IPTIGFNVETVQY----------------NNIKFQVWDLGGQTSIRPYWRCYFPNTQ 86 (182)
Q Consensus 28 ~GKtsli~~~~~~~~~~~-----~~t~~~~~~~~~~----------------~~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (182)
++||||+.++.+...... .+.+|......+. .-..+.||||||++.+..+.......+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 349999999987766542 2233333333221 1123899999999999888888888899
Q ss_pred eEEEEEeCCCc---chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--------------HHHHHHHh------
Q 030149 87 AIIYVVDSSDT---ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--------------DAAVTEAL------ 143 (182)
Q Consensus 87 ~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--------------~~~~~~~~------ 143 (182)
++++|+|+++. +++..+ . .+.. .+.|+++++||+|+..... .+.....+
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I----~-~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAI----N-ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCCHhHHHHH----H-HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999863 222222 2 2222 3689999999999853211 01111111
Q ss_pred -----cccc----------ccCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 144 -----ELHK----------IKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 144 -----~~~~----------~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
.... ......+++++||++|+|+++|...|....
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 1110 012467899999999999999998886543
No 283
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.61 E-value=2.2e-15 Score=119.51 Aligned_cols=113 Identities=18% Similarity=0.069 Sum_probs=79.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC---------------CCcc----cccccceeEE----EEEEcCeEEEEEEcCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG---------------EVVS----TIPTIGFNVE----TVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~---------------~~~~----~~~t~~~~~~----~~~~~~~~~~~~D~~g~ 71 (182)
.+..||+++|+.++|||||+++|+.. ++.. +..|+..... .+.+.+..+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 45689999999999999999999642 1111 1224433222 24457889999999999
Q ss_pred CCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
.++.......++.+|++++|+|+....... ....+.... ..+.|.++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~-t~~~~~~~~----~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQ-TETVLRQAL----KENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCcc-HHHHHHHHH----HcCCCEEEEEEChhccc
Confidence 998888888899999999999987642211 122222222 23578889999999864
No 284
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.4e-14 Score=105.36 Aligned_cols=155 Identities=21% Similarity=0.101 Sum_probs=115.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc------cccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.|+-.|+...|||||+..+.+..... ..-|++..+......+..+.|+|.||++++-......+...|+.++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 57889999999999999998765432 344666666666778889999999999999888888888999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
|+++.- .........++.... ....++|+||+|..++...++..+....... ....++|.+|+.+|+||++|.+.
T Consensus 82 ~~deGl--~~qtgEhL~iLdllg--i~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 82 AADEGL--MAQTGEHLLILDLLG--IKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred eCccCc--chhhHHHHHHHHhcC--CCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHH
Confidence 995432 222233333334332 4557999999999876544444443332222 45667899999999999999999
Q ss_pred HHHHHh
Q 030149 173 LSNTLK 178 (182)
Q Consensus 173 l~~~~~ 178 (182)
|.+...
T Consensus 157 l~~L~~ 162 (447)
T COG3276 157 LIDLLE 162 (447)
T ss_pred HHHhhh
Confidence 998874
No 285
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.60 E-value=1.6e-14 Score=114.88 Aligned_cols=112 Identities=18% Similarity=0.107 Sum_probs=78.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc------------cc-------cccceeEEEEEE----cCeEEEEEEcCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS------------TI-------PTIGFNVETVQY----NNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~------------~~-------~t~~~~~~~~~~----~~~~~~~~D~~g~ 71 (182)
.+..+|+++|+.++|||||+++++...-.. +. -|+......+.+ .+..+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 456799999999999999999997422110 00 122223233333 4678999999999
Q ss_pred CCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
.++.......++.+|++|+|+|+...-.. .....+..... .+.|.++++||+|+.
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHH----cCCCeEEEEECchhh
Confidence 99988888889999999999998765321 12233333322 246789999999975
No 286
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.59 E-value=8.1e-14 Score=98.85 Aligned_cols=117 Identities=10% Similarity=0.101 Sum_probs=73.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccc--cc--ccceeEEEEEEcCeEEEEEEcCCCCCCcchh-------hhcc-
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST--IP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPYW-------RCYF- 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~~~- 82 (182)
...++|+++|.+|+||||++|++++...... .+ +...........+.++.++||||..+..... ..++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 5779999999999999999999998765332 12 2222233344578999999999966542211 1111
Q ss_pred -CCCCeEEEEEeCCCc--chH-HHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 83 -PNTQAIIYVVDSSDT--ERL-VIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 83 -~~~d~ii~v~d~~~~--~s~-~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
...|+++||.+.+.. ... ..+.+.+...+.. ....+.|+++|++|...+
T Consensus 116 ~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~--~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK--DIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh--hhhccEEEEEECCccCCC
Confidence 258999999665432 211 1222333333321 123578999999997643
No 287
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.59 E-value=2.8e-14 Score=102.41 Aligned_cols=135 Identities=22% Similarity=0.362 Sum_probs=101.3
Q ss_pred cccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc----------hHHHHHHHHHHHHhhc
Q 030149 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE----------RLVIAKDEFHAILEEE 114 (182)
Q Consensus 45 ~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~ 114 (182)
+.||.|.....+.+++..+.++|++||..-+..|..++.+++++|+|++.++-+ .+.+....+..+.+..
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 356888999999999999999999999999999999999999999999987632 4456667778888888
Q ss_pred ccCCCeEEEEeecCCCCCC-----------------CCHHHHHHHhccc----cc-cCCccEEEEecccCCCChHHHHHH
Q 030149 115 ELRGAVVLIFANKQDLPGA-----------------LDDAAVTEALELH----KI-KNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 115 ~~~~~~iivv~nK~Dl~~~-----------------~~~~~~~~~~~~~----~~-~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
.-.+.++|+++||.|+.++ ...++....+..+ .. ..+.+-+-.+.|.+-.+|+.+|..
T Consensus 259 ~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~a 338 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDA 338 (354)
T ss_pred ccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHH
Confidence 8888999999999998542 1112222211111 11 113444666688888999999999
Q ss_pred HHHHHhh
Q 030149 173 LSNTLKS 179 (182)
Q Consensus 173 l~~~~~~ 179 (182)
+.+.+..
T Consensus 339 v~d~Ii~ 345 (354)
T KOG0082|consen 339 VTDTIIQ 345 (354)
T ss_pred HHHHHHH
Confidence 9887754
No 288
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.58 E-value=1.3e-13 Score=93.42 Aligned_cols=104 Identities=16% Similarity=0.190 Sum_probs=65.9
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHH
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDA 137 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~ 137 (182)
+....++++.|..-...... .-+|.+|.|+|+.+.+.... .....+ ...-++++||+|+.+. .+.+
T Consensus 91 ~~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~---~~~~qi------~~ad~~~~~k~d~~~~~~~~~~ 158 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR---KGGPGI------TRSDLLVINKIDLAPMVGADLG 158 (199)
T ss_pred CCCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh---hhHhHh------hhccEEEEEhhhccccccccHH
Confidence 34667888888432222211 12588999999977654211 111111 1234899999999752 3344
Q ss_pred HHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 138 AVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
.+.+..... .+..+++++|+++|+|++++++++.+.+.
T Consensus 159 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 159 VMERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 444444332 34677999999999999999999987653
No 289
>PTZ00416 elongation factor 2; Provisional
Probab=99.56 E-value=2.6e-14 Score=114.89 Aligned_cols=112 Identities=18% Similarity=0.163 Sum_probs=79.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc------------c-------ccccceeEEEEEEc----------CeEEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS------------T-------IPTIGFNVETVQYN----------NIKFQV 65 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~------------~-------~~t~~~~~~~~~~~----------~~~~~~ 65 (182)
.+..||+++|+.++|||||+++|+...-.. + .-|+......+.+. +..+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 566799999999999999999997532110 0 01222222233333 577999
Q ss_pred EEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 66 WDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 66 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
+||||+.++.......++.+|++|+|+|+.+.-... ....+..+.. .+.|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 999999999888888899999999999997753222 2233333332 468999999999986
No 290
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.56 E-value=1.8e-14 Score=116.00 Aligned_cols=113 Identities=18% Similarity=0.130 Sum_probs=80.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCc------------cc-------ccccceeEEEEEE----------------
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV------------ST-------IPTIGFNVETVQY---------------- 58 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~------------~~-------~~t~~~~~~~~~~---------------- 58 (182)
+.+..||+|+|+.++|||||+++|+...-. .+ .-|+......+.+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 367789999999999999999999743311 00 1122222223333
Q ss_pred cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
.+..++++||||+.+|.......++.+|++|+|+|+...-... ....|..... .+.|+++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~-t~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCccc-HHHHHHHHHH----CCCCEEEEEECCccc
Confidence 2678899999999999888888899999999999997653211 2233333333 478999999999986
No 291
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=8.8e-14 Score=104.15 Aligned_cols=155 Identities=20% Similarity=0.194 Sum_probs=103.3
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcC--------------------C--Ccc------------cccccceeEEEEEE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMG--------------------E--VVS------------TIPTIGFNVETVQY 58 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~--------------------~--~~~------------~~~t~~~~~~~~~~ 58 (182)
.+...++++|+|+..+|||||+.+++.. + +.. +.-|+......++-
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 3456799999999999999999998621 1 100 01122222333333
Q ss_pred cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc---hHH--HHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE---RLV--IAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~--~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
....+.+.|+||+.+|...+......+|+.++|+|++... .|+ ........+++.++ -..++|++||.|+.+.
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSW 330 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCc
Confidence 6678999999999999988888888999999999987532 222 11233344444443 4678999999999876
Q ss_pred CCH--HHHHH----Hh-ccccccCCccEEEEecccCCCChHHH
Q 030149 134 LDD--AAVTE----AL-ELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 134 ~~~--~~~~~----~~-~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
... +++.. .+ ....+....+.|++||+.+|+|+-..
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 322 22222 22 23345556667999999999987543
No 292
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=6.8e-14 Score=107.34 Aligned_cols=159 Identities=21% Similarity=0.148 Sum_probs=107.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-----cccccceeEEEEE----------------EcCeEEEEEEcCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-----TIPTIGFNVETVQ----------------YNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-----~~~t~~~~~~~~~----------------~~~~~~~~~D~~g~~~ 73 (182)
-+.+-|+|+|+..+|||-|+..+.+..... ....+|.++.... +.--.+.++||||++.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 467889999999999999999997644322 2334444444332 2334689999999999
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC-----CCCH------------
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG-----ALDD------------ 136 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~-----~~~~------------ 136 (182)
|-+++......||..|+|+|+.+.- ......-++.+..++.|+|+.+||+|..- +...
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGl-----epqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v 627 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGL-----EPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV 627 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccC-----CcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence 9999999999999999999996641 11111222334447899999999999631 1000
Q ss_pred -HHHHHH-------hcccc------cc----CCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 137 -AAVTEA-------LELHK------IK----NRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 137 -~~~~~~-------~~~~~------~~----~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
.++... ++.+. .+ ...++++++||.+|+||.+|+-+|.++..
T Consensus 628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 111111 11110 01 12567999999999999999999887654
No 293
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=9.4e-14 Score=98.37 Aligned_cols=159 Identities=17% Similarity=0.152 Sum_probs=96.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc---ccc-------ccceeEEEEEE---------cCeEEEEEEcCCCCCCc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIP-------TIGFNVETVQY---------NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~-------t~~~~~~~~~~---------~~~~~~~~D~~g~~~~~ 75 (182)
+-.+|+.++|+..||||||.+++..-.... ..| |.+...-.+.. ....+.++|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 345899999999999999999996422111 111 22211111111 34678999999998766
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHH-HHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH----HHHHHHhcc--ccc
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLV-IAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD----AAVTEALEL--HKI 148 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~----~~~~~~~~~--~~~ 148 (182)
.......+-.|..++|+|+.....-. ...-.+.++ .....++|+||+|...+... ++..+..+. ...
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 55555556679999999986542111 111111222 23556888899987544222 222222211 111
Q ss_pred c-CCccEEEEecccCC----CChHHHHHHHHHHHhh
Q 030149 149 K-NRQWAIFKTSAIKG----EGLFEGLDWLSNTLKS 179 (182)
Q Consensus 149 ~-~~~~~~~~~S~~~~----~gi~~l~~~l~~~~~~ 179 (182)
. ..+.|++++|+..| +++.||.+.|.+++..
T Consensus 159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 1 13578999999999 7888888888777643
No 294
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.53 E-value=1.6e-13 Score=93.86 Aligned_cols=152 Identities=17% Similarity=0.169 Sum_probs=88.8
Q ss_pred hhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCc--c-----------c----ccccceeEEEE-----------------
Q 030149 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVV--S-----------T----IPTIGFNVETV----------------- 56 (182)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~--~-----------~----~~t~~~~~~~~----------------- 56 (182)
...+.....|+++|+.|+|||||+++++..... . . ....+.....+
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l 95 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHAL 95 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHH
Confidence 345567899999999999999999999643100 0 0 00000000000
Q ss_pred ---EEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 57 ---QYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 57 ---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
...+..+.+++|.|.-... ..+....+..+.++|+.+.+.... . ... ....|.++++||+|+.+.
T Consensus 96 ~~~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~------~~~~a~iiv~NK~Dl~~~ 163 (207)
T TIGR00073 96 EDLPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL--K-YPG------MFKEADLIVINKADLAEA 163 (207)
T ss_pred HHhccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh--h-hHh------HHhhCCEEEEEHHHcccc
Confidence 0013477888888821101 111123456677888865542111 0 111 124678999999999753
Q ss_pred CC--HHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 134 LD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 134 ~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
.. ..+..+.+.. ..+..+++++||++|+|++++++++.+..
T Consensus 164 ~~~~~~~~~~~l~~---~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 164 VGFDVEKMKADAKK---INPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred chhhHHHHHHHHHH---hCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 22 2333333322 23457899999999999999999998753
No 295
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.51 E-value=5.3e-13 Score=93.04 Aligned_cols=161 Identities=22% Similarity=0.250 Sum_probs=101.5
Q ss_pred HHhhhhcC--CcccEEEEEcCCCCCHHHHHHHHhcC-----C-C-----ccccc-ccc-----------------eeEEE
Q 030149 7 RLFSSLFG--NKEARILVLGLDNAGKTTILYRLQMG-----E-V-----VSTIP-TIG-----------------FNVET 55 (182)
Q Consensus 7 ~~~~~~~~--~~~~~v~v~G~~~~GKtsli~~~~~~-----~-~-----~~~~~-t~~-----------------~~~~~ 55 (182)
.++..+.+ .+...|.|.|.||+|||||+..|... . . .+.+| |-| .-..+
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs 118 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRS 118 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEee
Confidence 34444443 56789999999999999999998521 1 0 01111 111 00000
Q ss_pred E--------------------EEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcc
Q 030149 56 V--------------------QYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEE 115 (182)
Q Consensus 56 ~--------------------~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~ 115 (182)
+ +-.++.+.|++|.|--.-.. ....-+|.++++.-+.-.+....++.-+.++..
T Consensus 119 ~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--- 192 (323)
T COG1703 119 SPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--- 192 (323)
T ss_pred cCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh---
Confidence 0 01356899999998433221 234468999999988777777776666655543
Q ss_pred cCCCeEEEEeecCCCCCCC-CHHHHHHHhcccc--ccC--CccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 116 LRGAVVLIFANKQDLPGAL-DDAAVTEALELHK--IKN--RQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 116 ~~~~~iivv~nK~Dl~~~~-~~~~~~~~~~~~~--~~~--~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
++|+||.|..... ...++...+.... ... ...|++.+||.+|+|+++|++.+.+....
T Consensus 193 ------i~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 193 ------IIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred ------eeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 9999999964321 1233333333322 222 34469999999999999999999887654
No 296
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=8.7e-14 Score=97.57 Aligned_cols=160 Identities=16% Similarity=0.096 Sum_probs=103.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccc------cccc--cee--------------EEEE----EE------cCeE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST------IPTI--GFN--------------VETV----QY------NNIK 62 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~------~~t~--~~~--------------~~~~----~~------~~~~ 62 (182)
+..+||.++|+...|||||..++.+-..... .-|+ |+. .... .. --.+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 6789999999999999999999976432210 0011 000 0000 00 0147
Q ss_pred EEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH----HH
Q 030149 63 FQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD----AA 138 (182)
Q Consensus 63 ~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~----~~ 138 (182)
+.|+|.||++-..+.+.+-..--|+.++|+.++.+.........+..+ +.. .-+.++++-||+|+...... ++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIi--gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EII--GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhh--ccceEEEEecccceecHHHHHHHHHH
Confidence 899999999877666655555569999999998865544444333322 221 23679999999999854222 11
Q ss_pred HHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 139 VTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
+.+...- --..+.|++++||..+.|++.|++.|.+.+..
T Consensus 165 Ik~FvkG--t~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 165 IKEFVKG--TVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHHhcc--cccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 1111111 11246789999999999999999999887653
No 297
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.49 E-value=1.7e-12 Score=93.51 Aligned_cols=107 Identities=15% Similarity=0.065 Sum_probs=65.9
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHH
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAV 139 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~ 139 (182)
+..+.|+||+|..... ......+|.++++.+.... +++......+ ..+|.++++||+|+.........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL------MEIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH------hhhccEEEEEcccccchhHHHHH
Confidence 6789999999854221 2345667888888654322 3333222222 25778999999999754322211
Q ss_pred HHH----hcccccc--CCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 140 TEA----LELHKIK--NRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 140 ~~~----~~~~~~~--~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
... +...... ....+++++||++++|++++++++.+.+.
T Consensus 194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 111 1111111 12235999999999999999999988754
No 298
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.49 E-value=1.2e-14 Score=99.74 Aligned_cols=152 Identities=20% Similarity=0.230 Sum_probs=89.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc------CCCc--cccccc---------------------ceeEEEEE--------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM------GEVV--STIPTI---------------------GFNVETVQ-------- 57 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~------~~~~--~~~~t~---------------------~~~~~~~~-------- 57 (182)
.+...|.|.|+||+|||||++.+.. .+.. ...|+. +.-...+.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 4678999999999999999999852 1110 011111 11111111
Q ss_pred ------------EcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEe
Q 030149 58 ------------YNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFA 125 (182)
Q Consensus 58 ------------~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~ 125 (182)
..++.+.+++|.|--.-. .....-+|.+++|+.+.-.+.....+.-+.++. -++|+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia---------Di~vV 174 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEIA---------DIFVV 174 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhhc---------cEEEE
Confidence 035789999999843222 223557899999999877776666665555553 39999
Q ss_pred ecCCCCCCCC-HHHHHHHhccccccC--CccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 126 NKQDLPGALD-DAAVTEALELHKIKN--RQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 126 nK~Dl~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
||+|...... ..++...+....... ...|++.+||.++.|+++|++.|.+...
T Consensus 175 NKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 175 NKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp E--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred eCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 9999643211 133333333222122 2457999999999999999999987654
No 299
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=6.3e-13 Score=96.77 Aligned_cols=113 Identities=19% Similarity=0.261 Sum_probs=85.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh--cCCC----------cc-------------cccccceeEEEEEEcCeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ--MGEV----------VS-------------TIPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~--~~~~----------~~-------------~~~t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.++..-+|+-+|.+|||||-+.++ ++-+ .. ..-++......++|.+..+++.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 456678999999999999999985 1110 00 1113335567788899999999999
Q ss_pred CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
|+++|..-....+.-+|..++|+|+... +.....++++....++.||+-++||.|...
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG-----iE~qT~KLfeVcrlR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG-----IEPQTLKLFEVCRLRDIPIFTFINKLDREG 147 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccC-----ccHHHHHHHHHHhhcCCceEEEeecccccc
Confidence 9999988888888889999999998554 333334444555558999999999999754
No 300
>PTZ00258 GTP-binding protein; Provisional
Probab=99.47 E-value=1.3e-12 Score=95.95 Aligned_cols=81 Identities=21% Similarity=0.266 Sum_probs=57.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEc-----------------CeEEEEEEcCCCCC-
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYN-----------------NIKFQVWDLGGQTS- 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~- 73 (182)
...++|+++|.|++|||||+|++.+..... ...|...+...+.+. ...+.++||||-..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 566899999999999999999998766432 222555565555553 23589999999432
Q ss_pred ------CcchhhhccCCCCeEEEEEeCC
Q 030149 74 ------IRPYWRCYFPNTQAIIYVVDSS 95 (182)
Q Consensus 74 ------~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
........++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1122334578899999999973
No 301
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.46 E-value=4.7e-13 Score=97.39 Aligned_cols=159 Identities=18% Similarity=0.200 Sum_probs=80.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEE---cCeEEEEEEcCCCCCCcchhhhc-----c
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQY---NNIKFQVWDLGGQTSIRPYWRCY-----F 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~-----~ 82 (182)
..+++|+|+|.+|+|||||||++.+-.... ..+ ....+.....| .-..+.+||.||..........| +
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 577999999999999999999997532211 111 11122222222 33569999999964333333333 4
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCC---------CCCCCHHHH----HHHhcc--cc
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL---------PGALDDAAV----TEALEL--HK 147 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl---------~~~~~~~~~----~~~~~~--~~ 147 (182)
...|.+|++.+. .|....-++...+.. .++|+.+|-||+|. +.....++. ++.... ..
T Consensus 113 ~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 113 YRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred cccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 567988877663 233344444444333 57999999999995 111122222 211111 11
Q ss_pred ccCCccEEEEecccCCC--ChHHHHHHHHHHHhhc
Q 030149 148 IKNRQWAIFKTSAIKGE--GLFEGLDWLSNTLKSI 180 (182)
Q Consensus 148 ~~~~~~~~~~~S~~~~~--gi~~l~~~l~~~~~~~ 180 (182)
......++|-+|+.+-. ....|.+.|.+-++..
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 12234458889987754 5778888888777654
No 302
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=8.5e-13 Score=103.26 Aligned_cols=116 Identities=19% Similarity=0.166 Sum_probs=87.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCC--------------Ccc-------cccccceeEEEEEEcC-eEEEEEEcCCC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGE--------------VVS-------TIPTIGFNVETVQYNN-IKFQVWDLGGQ 71 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~--------------~~~-------~~~t~~~~~~~~~~~~-~~~~~~D~~g~ 71 (182)
..+..||.|+|+.++|||||..+++... +.. +.-|+.....++.+.+ +.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 4678899999999999999999996321 110 1114445555677785 99999999999
Q ss_pred CCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC
Q 030149 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 134 (182)
-+|.......++-+|+.+.|+|+...-.. .....|.+..+ -++|.++++||+|.....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~-QTEtv~rqa~~----~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEP-QTETVWRQADK----YGVPRILFVNKMDRLGAD 144 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeee-cHHHHHHHHhh----cCCCeEEEEECccccccC
Confidence 99999999999999999999999765321 22344555544 489999999999987653
No 303
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.45 E-value=4.5e-12 Score=89.33 Aligned_cols=164 Identities=19% Similarity=0.202 Sum_probs=109.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCC----Ce
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNT----QA 87 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~----d~ 87 (182)
..-+|+|+|+.++||||||.++.+.+........++.+-.+.- +..++.+|-.-|+.....+....+... ..
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 4578999999999999999999877744444444444444433 336789999999887777776555433 56
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcc----------------------------------------------------
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEE---------------------------------------------------- 115 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~---------------------------------------------------- 115 (182)
+|++.|+++|+.+-...+.|..++..+.
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll 210 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL 210 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence 7889999999665444333322222100
Q ss_pred ---------cCCCeEEEEeecCCCCC-----CCCHHHHHHHhcc---ccccCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 116 ---------LRGAVVLIFANKQDLPG-----ALDDAAVTEALEL---HKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 116 ---------~~~~~iivv~nK~Dl~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+.+.|+++|+||||... .+..++-...++. .+....+...+.+|++...|++-+..+|..+..
T Consensus 211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhc
Confidence 00478999999999832 1122222222222 233345778999999999999999999988765
Q ss_pred h
Q 030149 179 S 179 (182)
Q Consensus 179 ~ 179 (182)
.
T Consensus 291 G 291 (473)
T KOG3905|consen 291 G 291 (473)
T ss_pred C
Confidence 3
No 304
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.7e-12 Score=92.22 Aligned_cols=149 Identities=17% Similarity=0.156 Sum_probs=97.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc------------------------------------cccccceeEEEEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS------------------------------------TIPTIGFNVETVQY 58 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~------------------------------------~~~t~~~~~~~~~~ 58 (182)
...++.+-+|...-||||||-+|+.+.... ..-|+++.+..+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 456899999999999999999997432211 01133333333333
Q ss_pred cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH--
Q 030149 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-- 136 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-- 136 (182)
.+.+|.+-||||++.+-..+..-...||+.|+++|+.. ..-....-...+...++ -..+++.+||+||.+-.+.
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLLG--IrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK--GVLEQTRRHSFIASLLG--IRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch--hhHHHhHHHHHHHHHhC--CcEEEEEEeeecccccCHHHH
Confidence 78899999999999988887777888999999999943 33333333333333332 3678999999999854221
Q ss_pred HHHHHHhccc--cccCCccEEEEecccCCCChH
Q 030149 137 AAVTEALELH--KIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 137 ~~~~~~~~~~--~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+.+...+... ........++++||+.|.|+-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 2222222111 111223469999999999874
No 305
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.44 E-value=2.2e-12 Score=85.38 Aligned_cols=64 Identities=17% Similarity=0.252 Sum_probs=43.2
Q ss_pred eEEEEEEcCCCC----CCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecC
Q 030149 61 IKFQVWDLGGQT----SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQ 128 (182)
Q Consensus 61 ~~~~~~D~~g~~----~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 128 (182)
..+.++||||.. .....+..+++.+|++|+|.++....+-.... .+.+.... .....++|.||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~-~l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDME-FLKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHH-HHHHHHTT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHH-HHHHHhcC---CCCeEEEEEcCC
Confidence 368999999953 23356778889999999999998865544332 33333222 345589999984
No 306
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.41 E-value=2.3e-12 Score=91.51 Aligned_cols=115 Identities=19% Similarity=0.246 Sum_probs=65.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcccc-----------cccceeEEEEEE--c--CeEEEEEEcCCCCCCcc---hh
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVSTI-----------PTIGFNVETVQY--N--NIKFQVWDLGGQTSIRP---YW 78 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~~~-----------~t~~~~~~~~~~--~--~~~~~~~D~~g~~~~~~---~~ 78 (182)
.++|+|+|.+|+|||||+|+|++....... ++.......... + ...+.++||||..+... .|
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999876543321 122222222222 2 35789999999332111 00
Q ss_pred ------------------------hhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC
Q 030149 79 ------------------------RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134 (182)
Q Consensus 79 ------------------------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 134 (182)
...=..+|+++|+++++...--+.....+..+- ..+++|-|+.|+|...+.
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLS-----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHT-----TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhc-----ccccEEeEEecccccCHH
Confidence 000124699999999865321122223333332 358899999999986543
Q ss_pred CH
Q 030149 135 DD 136 (182)
Q Consensus 135 ~~ 136 (182)
+.
T Consensus 159 el 160 (281)
T PF00735_consen 159 EL 160 (281)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 307
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.41 E-value=7.4e-13 Score=83.19 Aligned_cols=113 Identities=17% Similarity=0.091 Sum_probs=77.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cc-cccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TI-PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSS 95 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~-~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
++|+++|+.|+|||+|+.++....+.. +. +|.+ +......+.+.++.++.|++..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 489999999999999999997666643 22 3333 3333445677889999999999
Q ss_pred CcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 96 DTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
..++++.. |...+.. ....+.|.++++||.|+.+.. .+.+. ....++++|+++|.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~-~~k~dl~~~~~~nk~dl~~~~---~~~~~--------~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLV-GNKSDLPILVGGNRDVLEEER---QVATE--------EGLEFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHh-cCCCCCcEEEEeechhhHhhC---cCCHH--------HHHHHHHHhCCCcchhh
Confidence 98887655 5444433 233568899999999974321 11111 11236789999999885
No 308
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.41 E-value=7.5e-12 Score=93.35 Aligned_cols=130 Identities=25% Similarity=0.368 Sum_probs=95.3
Q ss_pred ccceeEEEEEE-cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc----------chHHHHHHHHHHHHhhccc
Q 030149 48 TIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT----------ERLVIAKDEFHAILEEEEL 116 (182)
Q Consensus 48 t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (182)
|.|+....+.+ +...+.++|++|+...+..|..++.+++++|||+++++- ..+.+....+..+.+....
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 55677778888 999999999999999999999999999999999997542 3467777888888888777
Q ss_pred CCCeEEEEeecCCCCC------C--------------CCHHHHHHHhccc----cccC---CccEEEEecccCCCChHHH
Q 030149 117 RGAVVLIFANKQDLPG------A--------------LDDAAVTEALELH----KIKN---RQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 117 ~~~~iivv~nK~Dl~~------~--------------~~~~~~~~~~~~~----~~~~---~~~~~~~~S~~~~~gi~~l 169 (182)
.+.|+++++||.|+.+ + .+.+.....+... .... ..+.+..++|.+.+.+..+
T Consensus 302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v 381 (389)
T PF00503_consen 302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV 381 (389)
T ss_dssp TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence 8999999999999621 1 1222222222211 1111 3445678889988899999
Q ss_pred HHHHHHHH
Q 030149 170 LDWLSNTL 177 (182)
Q Consensus 170 ~~~l~~~~ 177 (182)
|+.+.+.+
T Consensus 382 ~~~v~~~i 389 (389)
T PF00503_consen 382 FNAVKDII 389 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHhcCcC
Confidence 98887653
No 309
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.41 E-value=7.8e-13 Score=88.75 Aligned_cols=147 Identities=20% Similarity=0.259 Sum_probs=97.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC----CcccccccceeEEEEEE-cCeEEEEEEcCCCCCCcc-----hhhhccCCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE----VVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRP-----YWRCYFPNT 85 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~----~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~~~~~~ 85 (182)
...||+++|.+||||||+-..+..+- .....+|+++....+.+ +..-+.+||++|++.+-. .....++++
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 35689999999999999988776443 23356677777777777 668999999999985422 234557889
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhh--cccCCCeEEEEeecCCCCCCCCHHHHHHHhcc---ccccCCccEEEEecc
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEE--EELRGAVVLIFANKQDLPGALDDAAVTEALEL---HKIKNRQWAIFKTSA 160 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~~~~S~ 160 (182)
++++++||+...+-..+. ..++..++. ...+...++..++|.|+...+..+.+.+.... ...+...+.++++|.
T Consensus 83 ~vli~vFDves~e~~~D~-~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDF-HYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhH-HHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 999999999776533332 222222221 22356779999999999877666555443322 112233455788776
Q ss_pred cCC
Q 030149 161 IKG 163 (182)
Q Consensus 161 ~~~ 163 (182)
.+.
T Consensus 162 wDe 164 (295)
T KOG3886|consen 162 WDE 164 (295)
T ss_pred hhH
Confidence 654
No 310
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.40 E-value=2.9e-12 Score=89.57 Aligned_cols=95 Identities=21% Similarity=0.161 Sum_probs=71.5
Q ss_pred CCCcchhhhccCCCCeEEEEEeCCCcc-hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHH-HHHHHhcccccc
Q 030149 72 TSIRPYWRCYFPNTQAIIYVVDSSDTE-RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDA-AVTEALELHKIK 149 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 149 (182)
+++..+...+++++|.+++|+|+.++. ++..+..|+..+.. .+.|+++|+||+||.+..... +..+.+ .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----R 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-----H
Confidence 455666777899999999999999887 88888887765432 579999999999996432211 111222 2
Q ss_pred CCccEEEEecccCCCChHHHHHHHHH
Q 030149 150 NRQWAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 150 ~~~~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
..+.+++++||++|+|++++++.+..
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 24567999999999999999998764
No 311
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.39 E-value=7e-13 Score=93.19 Aligned_cols=150 Identities=19% Similarity=0.190 Sum_probs=101.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEE-cCeEEEEEEcCCCC---------CCcchhhhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQT---------SIRPYWRCY 81 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~g~~---------~~~~~~~~~ 81 (182)
....-|.|+|-+++|||||++++.+....+ ...|.+.+...... .+..+.+.||.|.- .|.. ....
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~A-TLee 254 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQA-TLEE 254 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHH-HHHH
Confidence 455789999999999999999998554433 45577776666666 56778889999932 1222 2234
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe----EEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEE
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV----VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFK 157 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~----iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
+..+|.++.|.|+++|+- +....-....++...-+..| ++=|-||+|..+..... +..+ .+.
T Consensus 255 VaeadlllHvvDiShP~a-e~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~-----------E~n~--~v~ 320 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNA-EEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE-----------EKNL--DVG 320 (410)
T ss_pred HhhcceEEEEeecCCccH-HHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc-----------ccCC--ccc
Confidence 677999999999999974 33333344444443333333 56677777764331111 1111 688
Q ss_pred ecccCCCChHHHHHHHHHHHhh
Q 030149 158 TSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
+||++|.|++++.+.+-..+..
T Consensus 321 isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 321 ISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred cccccCccHHHHHHHHHHHhhh
Confidence 9999999999999988777653
No 312
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.38 E-value=3.4e-12 Score=90.06 Aligned_cols=59 Identities=31% Similarity=0.395 Sum_probs=41.8
Q ss_pred CCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 118 GAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 118 ~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
..+.++++||+|+.+.. ..++...........+..+++++|+++|+|++++.++|.++.
T Consensus 230 ~~ADIVVLNKiDLl~~~-~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 230 AAASLMLLNKVDLLPYL-NFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred hcCcEEEEEhHHcCccc-HHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45679999999997521 122333333333344677899999999999999999998753
No 313
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.36 E-value=8.5e-12 Score=90.83 Aligned_cols=78 Identities=23% Similarity=0.261 Sum_probs=55.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcC-----------------eEEEEEEcCCCCCC---
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-----------------IKFQVWDLGGQTSI--- 74 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~--- 74 (182)
++|+++|.|++|||||+|++.+..... ...|...+...+.+.+ ..+.++|+||-..-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999877322 2335555555555533 25899999994321
Q ss_pred ----cchhhhccCCCCeEEEEEeCC
Q 030149 75 ----RPYWRCYFPNTQAIIYVVDSS 95 (182)
Q Consensus 75 ----~~~~~~~~~~~d~ii~v~d~~ 95 (182)
.......++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 112334578899999999984
No 314
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.36 E-value=2.9e-11 Score=91.09 Aligned_cols=163 Identities=19% Similarity=0.202 Sum_probs=103.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccc--eeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCC----
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG--FNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPN---- 84 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~--~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~---- 84 (182)
....+|+|+|..++|||||+.+|.+..- +.++.+ +.+..+.- +..++.+|-..|...+..+....+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 3557999999999999999999976543 334444 44433322 22578999999877777776655543
Q ss_pred CCeEEEEEeCCCcchHH-HHHHHHH----------------------------HHHhh---c--c---------------
Q 030149 85 TQAIIYVVDSSDTERLV-IAKDEFH----------------------------AILEE---E--E--------------- 115 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~-~~~~~~~----------------------------~~~~~---~--~--------------- 115 (182)
--++|+|+|.+.|+.+- .+..|+. .+.+- . .
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~ 180 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE 180 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence 25688899999987543 2222221 10000 0 0
Q ss_pred -------------cCCCeEEEEeecCCCCCCC-----CHHHHHHHh---ccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 116 -------------LRGAVVLIFANKQDLPGAL-----DDAAVTEAL---ELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 116 -------------~~~~~iivv~nK~Dl~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
+-+.|++||++|+|..... -.++....+ -.......+...+.+|++...+++.|..+|.
T Consensus 181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~ 260 (472)
T PF05783_consen 181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL 260 (472)
T ss_pred cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence 0036999999999964211 111211111 1223344678899999999999999999998
Q ss_pred HHHhh
Q 030149 175 NTLKS 179 (182)
Q Consensus 175 ~~~~~ 179 (182)
..+..
T Consensus 261 h~l~~ 265 (472)
T PF05783_consen 261 HRLYG 265 (472)
T ss_pred HHhcc
Confidence 88754
No 315
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.35 E-value=1.6e-11 Score=94.49 Aligned_cols=118 Identities=16% Similarity=0.070 Sum_probs=73.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccc----cccceeEEEEEEcCeEEEEEEcCCCCCCcc-------h---hhhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTI----PTIGFNVETVQYNNIKFQVWDLGGQTSIRP-------Y---WRCY 81 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~---~~~~ 81 (182)
..++|+++|.+|+||||++|++++....... .|...........+..+.++||||..+... + ...+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 4579999999999999999999987643321 233332223344788999999999654311 1 1123
Q ss_pred cC--CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcc-cCCCeEEEEeecCCCCCC
Q 030149 82 FP--NTQAIIYVVDSSDTERLVIAKDEFHAILEEEE-LRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 82 ~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~ 133 (182)
+. .+|++|+|..++...........+..+....+ ..-...|||.|+.|..++
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 33 47999999887533322122233333322211 113568999999998764
No 316
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.34 E-value=1.8e-11 Score=80.58 Aligned_cols=144 Identities=21% Similarity=0.207 Sum_probs=85.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC---CCcc-------c---------c-c---ccceeEE-----E--E----------
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG---EVVS-------T---------I-P---TIGFNVE-----T--V---------- 56 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~---~~~~-------~---------~-~---t~~~~~~-----~--~---------- 56 (182)
-+.|.|.|++|||||+|+.+++.. ++.. + . + ..+.+.. . +
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 379999999999999999997531 1110 0 0 0 0011100 0 0
Q ss_pred EEcCeEEEEEEcCCCCCCcchhhhccCCCC-eEEEEEeCCCcchHHHHHHHHHHHHh-hcccCCCeEEEEeecCCCCCCC
Q 030149 57 QYNNIKFQVWDLGGQTSIRPYWRCYFPNTQ-AIIYVVDSSDTERLVIAKDEFHAILE-EEELRGAVVLIFANKQDLPGAL 134 (182)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~iivv~nK~Dl~~~~ 134 (182)
.+.+..+.|++..|.- .......-.| .-|+|+|+...+-.. .+ ++... ..-++|+||.|+.+-.
T Consensus 93 ~~~~~Dll~iEs~GNL----~~~~sp~L~d~~~v~VidvteGe~~P---------~K~gP~i~-~aDllVInK~DLa~~v 158 (202)
T COG0378 93 DFPDLDLLFIESVGNL----VCPFSPDLGDHLRVVVIDVTEGEDIP---------RKGGPGIF-KADLLVINKTDLAPYV 158 (202)
T ss_pred cCCcCCEEEEecCcce----ecccCcchhhceEEEEEECCCCCCCc---------ccCCCcee-EeeEEEEehHHhHHHh
Confidence 0012466777777611 1111122234 889999997764210 01 11111 2569999999996532
Q ss_pred --CHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 135 --DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 135 --~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
+.+...+...+ -.+..+++.+|+++|+|++++++++...+
T Consensus 159 ~~dlevm~~da~~---~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 159 GADLEVMARDAKE---VNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred CccHHHHHHHHHH---hCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 33555444443 34677899999999999999999987654
No 317
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.33 E-value=6.9e-11 Score=81.89 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=70.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-------ccccc-------c--eeE--------------------------
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-------TIPTI-------G--FNV-------------------------- 53 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-------~~~t~-------~--~~~-------------------------- 53 (182)
.-..++|+|+.|+||||+++++.+..+.. ..|+. . ...
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 45689999999999999999998764221 11100 0 000
Q ss_pred ----------EEEEE---cCeEEEEEEcCCCCCC-------------cchhhhccCC-CCeEEEEEeCCCcchHHHHHHH
Q 030149 54 ----------ETVQY---NNIKFQVWDLGGQTSI-------------RPYWRCYFPN-TQAIIYVVDSSDTERLVIAKDE 106 (182)
Q Consensus 54 ----------~~~~~---~~~~~~~~D~~g~~~~-------------~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~~~~ 106 (182)
..++. ....+.++||||.... ..+...++++ .+++++|+|+...-.-....
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l-- 182 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL-- 182 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH--
Confidence 00111 1257899999996421 2244566774 46889999885532211211
Q ss_pred HHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 107 FHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 107 ~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
.+.+.......|+++|+||+|..++
T Consensus 183 --~ia~~ld~~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 183 --KLAKEVDPQGERTIGVITKLDLMDE 207 (240)
T ss_pred --HHHHHHHHcCCcEEEEEECCCCCCc
Confidence 2223333357899999999999765
No 318
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=99.27 E-value=1.1e-10 Score=87.79 Aligned_cols=101 Identities=17% Similarity=0.257 Sum_probs=76.5
Q ss_pred eEEEEEEcCCC-------------CCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeec
Q 030149 61 IKFQVWDLGGQ-------------TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANK 127 (182)
Q Consensus 61 ~~~~~~D~~g~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK 127 (182)
.++.++|.||. +....+...++.+.++||+|+. ..|.+..+....++..+..+.+...|+|+||
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ---DGSVDAERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ---DGSVDAERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec---cCCcchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 58999999992 2345577889999999999997 3344555556666666666678899999999
Q ss_pred CCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCC
Q 030149 128 QDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGE 164 (182)
Q Consensus 128 ~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (182)
+|+.+. .+++.+.+.+.-+.+-...+.||.+-.-.|.
T Consensus 489 VDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGn 527 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGN 527 (980)
T ss_pred cchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCC
Confidence 999765 5678888888766666667778888766554
No 319
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.24 E-value=2.4e-10 Score=86.19 Aligned_cols=153 Identities=16% Similarity=0.100 Sum_probs=100.1
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc----eeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG----FNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
..++.+++.|+|+.++|||.+++++.++.+.. +..+.. .+...+......+.+.|.+-. ....+.... ..||+
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 44678999999999999999999999977665 222222 333333334556667777654 222222222 67999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC-----CHHHHHHHhccccccCCccEEEEecccC
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL-----DDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
+.++||.+++.+|............. ...|+++|.+|+|+.+.. .++++...+. ... -...|+..
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~----i~~---P~~~S~~~ 568 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLG----LPP---PIHISSKT 568 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcC----CCC---CeeeccCC
Confidence 99999999999998888766665443 579999999999996432 2222222221 111 34455553
Q ss_pred CCChHHHHHHHHHHHh
Q 030149 163 GEGLFEGLDWLSNTLK 178 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~ 178 (182)
... .++|..|..+..
T Consensus 569 ~~s-~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 569 LSS-NELFIKLATMAQ 583 (625)
T ss_pred CCC-chHHHHHHHhhh
Confidence 222 788888887653
No 320
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1e-10 Score=81.57 Aligned_cols=143 Identities=21% Similarity=0.243 Sum_probs=93.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC-------CC---cc--ccc-----ccceeEEEEEE--cCeEEEEEEcCCCCCCc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG-------EV---VS--TIP-----TIGFNVETVQY--NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~-------~~---~~--~~~-----t~~~~~~~~~~--~~~~~~~~D~~g~~~~~ 75 (182)
....||..+|+.+.|||||..++..- .. .. ..| .+.++...+.| .+..+-.+|+||+.++-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 56799999999999999998887421 11 11 111 22233344444 67889999999999887
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCC-eEEEEeecCCCCCCCCH-----HHHHHHhcccccc
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGA-VVLIFANKQDLPGALDD-----AAVTEALELHKIK 149 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~iivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~ 149 (182)
........+.|..|+|+.+.+... ...+..+.-. ++ -.. .+++++||+|+.++.+. .++.+.+.+..+.
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpm-PqTrEHiLla-rq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~ 164 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPM-PQTREHILLA-RQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP 164 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCC-Ccchhhhhhh-hh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence 777766777899999999876431 1111111111 11 134 68999999999874333 3334444445555
Q ss_pred CCccEEEEecccC
Q 030149 150 NRQWAIFKTSAIK 162 (182)
Q Consensus 150 ~~~~~~~~~S~~~ 162 (182)
....|++.-|++.
T Consensus 165 gd~~Pii~gSal~ 177 (394)
T COG0050 165 GDDTPIIRGSALK 177 (394)
T ss_pred CCCcceeechhhh
Confidence 5677888888865
No 321
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=4.6e-11 Score=91.28 Aligned_cols=111 Identities=15% Similarity=0.161 Sum_probs=80.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccc----------cc------cccee----EEEEEE-----cCeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST----------IP------TIGFN----VETVQY-----NNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~----------~~------t~~~~----~~~~~~-----~~~~~~~~D~~ 69 (182)
....+|+++|+-++|||+|+..+........ .. ..++. ..++-. ..+-+++.|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 5668999999999999999999976543221 11 11111 112211 34678999999
Q ss_pred CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCC
Q 030149 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 130 (182)
|+-.|.......++.+|++++++|+.+.-++... .++++....+.|+++|+||+|.
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-----r~ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-----RIIKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHH-----HHHHHHHhccCcEEEEEehhHH
Confidence 9999999999999999999999999877554332 2333333357999999999996
No 322
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=5e-10 Score=80.82 Aligned_cols=80 Identities=26% Similarity=0.303 Sum_probs=59.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEE------------------cCeEEEEEEcCC-----
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQY------------------NNIKFQVWDLGG----- 70 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~------------------~~~~~~~~D~~g----- 70 (182)
.++++++|-|++|||||.|++....... ..| |+..+...+.. -...+.++|.+|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 4789999999999999999998766332 333 66655555443 124689999998
Q ss_pred --CCCCcchhhhccCCCCeEEEEEeCCC
Q 030149 71 --QTSIRPYWRCYFPNTQAIIYVVDSSD 96 (182)
Q Consensus 71 --~~~~~~~~~~~~~~~d~ii~v~d~~~ 96 (182)
.+...+.....++.+|+++.|+|...
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 34556666677899999999999764
No 323
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=2.1e-10 Score=77.92 Aligned_cols=159 Identities=23% Similarity=0.297 Sum_probs=101.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc----cccccceeEEEEEEcCeEEEEEEcCCCCCCcch---hhhccCCCCeEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY---WRCYFPNTQAII 89 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~---~~~~~~~~d~ii 89 (182)
+.+|+++|...|||||+..-...+-.+. ..+|...+..++...-..+.+||.||+-.+... ....++.+-++|
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 3569999999999999987665332211 334555555555556688999999998765443 244578899999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHh--hcccCCCeEEEEeecCCCCCCCCH-HHH-------HHHhccccccCCccEEEEec
Q 030149 90 YVVDSSDTERLVIAKDEFHAILE--EEELRGAVVLIFANKQDLPGALDD-AAV-------TEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~--~~~~~~~~iivv~nK~Dl~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~S 159 (182)
+|+|+.+. +.+....+..... +..+++..+-+.++|.|...++.. +.. .+.+........++.|+-+|
T Consensus 107 fvIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 107 FVIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 99998543 2222222222222 355678889999999997654322 111 12222233344566788888
Q ss_pred ccCCCChHHHHHHHHHHHh
Q 030149 160 AIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~ 178 (182)
..+.. |-|.|..+.+.+-
T Consensus 185 IyDHS-IfEAFSkvVQkLi 202 (347)
T KOG3887|consen 185 IYDHS-IFEAFSKVVQKLI 202 (347)
T ss_pred ecchH-HHHHHHHHHHHHh
Confidence 87764 7777776666553
No 324
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.22 E-value=8.6e-10 Score=80.95 Aligned_cols=157 Identities=16% Similarity=0.143 Sum_probs=88.4
Q ss_pred HhhhhcC--CcccEEEEEcCCCCCHHHHHHHHhcC----CCc-------------c--cc---cccceeE---EEEEE--
Q 030149 8 LFSSLFG--NKEARILVLGLDNAGKTTILYRLQMG----EVV-------------S--TI---PTIGFNV---ETVQY-- 58 (182)
Q Consensus 8 ~~~~~~~--~~~~~v~v~G~~~~GKtsli~~~~~~----~~~-------------~--~~---~t~~~~~---~~~~~-- 58 (182)
+|.+... .-.+-|+|+|+.++|||||+++|.+. ... + .. .|....+ ..+..
T Consensus 6 iykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~ 85 (492)
T TIGR02836 6 IYKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEINI 85 (492)
T ss_pred HHHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEec
Confidence 4444432 56789999999999999999999876 322 1 11 1222222 22222
Q ss_pred ---cCeEEEEEEcCCCCC--------Ccc------h---------------hhhccC-CCCeEEEEE-eCC----CcchH
Q 030149 59 ---NNIKFQVWDLGGQTS--------IRP------Y---------------WRCYFP-NTQAIIYVV-DSS----DTERL 100 (182)
Q Consensus 59 ---~~~~~~~~D~~g~~~--------~~~------~---------------~~~~~~-~~d~ii~v~-d~~----~~~s~ 100 (182)
-..+++++||+|... ... . ....+. ++|+.|+|. |.+ .++.+
T Consensus 86 ~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y 165 (492)
T TIGR02836 86 NEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDY 165 (492)
T ss_pred cCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccc
Confidence 247899999999221 111 0 223345 789999988 763 11222
Q ss_pred H-HHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCC--ChHHHHHHH
Q 030149 101 V-IAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGE--GLFEGLDWL 173 (182)
Q Consensus 101 ~-~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~--gi~~l~~~l 173 (182)
. .-..++..+.. .++|+++++||.|-..+. .....+.+.. ..+.+++.+|+..-. .|..+++.+
T Consensus 166 ~~aEe~~i~eLk~----~~kPfiivlN~~dp~~~e-t~~l~~~l~e----ky~vpvl~v~c~~l~~~DI~~il~~v 232 (492)
T TIGR02836 166 VEAEERVIEELKE----LNKPFIILLNSTHPYHPE-TEALRQELEE----KYDVPVLAMDVESMRESDILSVLEEV 232 (492)
T ss_pred hHHHHHHHHHHHh----cCCCEEEEEECcCCCCch-hHHHHHHHHH----HhCCceEEEEHHHcCHHHHHHHHHHH
Confidence 2 22344444433 589999999999943222 2333333321 123567777775533 344444443
No 325
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.18 E-value=1.1e-10 Score=77.34 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=42.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE-cCeEEEEEEcCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGG 70 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g 70 (182)
...++++++|.||+|||||+|++.+.......+..|.+.....+ .+..+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLDKKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeCCCEEEEECcC
Confidence 34589999999999999999999988776655555544432222 235789999999
No 326
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.17 E-value=8.2e-11 Score=83.07 Aligned_cols=76 Identities=25% Similarity=0.248 Sum_probs=54.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCe-----------------EEEEEEcCCCCCC-----
Q 030149 20 ILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNI-----------------KFQVWDLGGQTSI----- 74 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~-----------------~~~~~D~~g~~~~----- 74 (182)
|+++|.|++|||||+|++.+.+... ...|...+...+.+.+. .+.++|+||-..-
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999877532 23355666666555443 4999999994321
Q ss_pred --cchhhhccCCCCeEEEEEeCC
Q 030149 75 --RPYWRCYFPNTQAIIYVVDSS 95 (182)
Q Consensus 75 --~~~~~~~~~~~d~ii~v~d~~ 95 (182)
.......++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 112334467899999999873
No 327
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.17 E-value=1e-09 Score=75.09 Aligned_cols=84 Identities=23% Similarity=0.354 Sum_probs=64.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCC--ccc-ccccceeEEEEEEcCeEEEEEEcCCCCC-------CcchhhhccCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEV--VST-IPTIGFNVETVQYNNIKFQVWDLGGQTS-------IRPYWRCYFPN 84 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~--~~~-~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~ 84 (182)
.-.-+|+++|-|.+|||||+..+..... ..| ..|..+....+.+++..+++.|.||.-+ .........+.
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence 3458999999999999999999975443 223 3466677888899999999999999422 12334455678
Q ss_pred CCeEEEEEeCCCcc
Q 030149 85 TQAIIYVVDSSDTE 98 (182)
Q Consensus 85 ~d~ii~v~d~~~~~ 98 (182)
+|.+++|.|++..+
T Consensus 140 aDlilMvLDatk~e 153 (364)
T KOG1486|consen 140 ADLILMVLDATKSE 153 (364)
T ss_pred ccEEEEEecCCcch
Confidence 99999999997743
No 328
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.16 E-value=1.1e-10 Score=78.89 Aligned_cols=98 Identities=19% Similarity=0.110 Sum_probs=63.9
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHh---cccccc
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEAL---ELHKIK 149 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~---~~~~~~ 149 (182)
+...+..+++.+|++++|+|+.++..- +...+... ..+.|+++|+||+|+...... ....... ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 567778889999999999999876421 11111111 246899999999999644322 2222111 001111
Q ss_pred CCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 150 NRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 150 ~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
....+++++||++|+|++++++.+.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 11124899999999999999999988764
No 329
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.14 E-value=2.5e-10 Score=74.76 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=42.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE-cCeEEEEEEcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGG 70 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g 70 (182)
+..+|+++|.+|+|||||+|++.+.......++.+.+.....+ .+..+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence 5688999999999999999999988776666666654443333 234589999999
No 330
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.14 E-value=1.2e-10 Score=76.17 Aligned_cols=95 Identities=17% Similarity=0.093 Sum_probs=61.9
Q ss_pred cchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccE
Q 030149 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWA 154 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 154 (182)
+.+.....+++|++++|+|+.++..... ..+..... ..++|+++|+||+|+.......... ... ...+.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~-~~~----~~~~~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVL---ELGKKLLIVLNKADLVPKEVLEKWK-SIK----ESEGIP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHH---hCCCcEEEEEEhHHhCCHHHHHHHH-HHH----HhCCCc
Confidence 3455666778999999999987643221 11222222 2368999999999986321111111 111 123456
Q ss_pred EEEecccCCCChHHHHHHHHHHHhh
Q 030149 155 IFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 155 ~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
++++||+++.|++++++.+.+.+..
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EEEEEccccccHHHHHHHHHHHHhh
Confidence 9999999999999999999887653
No 331
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=8.9e-10 Score=79.21 Aligned_cols=115 Identities=18% Similarity=0.154 Sum_probs=77.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc----cccccceeEEEEEEc-------------------------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYN------------------------------- 59 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~----~~~t~~~~~~~~~~~------------------------------- 59 (182)
....-|+++|.-..||||+|+.++..++.. ..||...-...+...
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 456789999999999999999999888765 344444222211110
Q ss_pred ----------CeEEEEEEcCCCCCCc-----------chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCC
Q 030149 60 ----------NIKFQVWDLGGQTSIR-----------PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRG 118 (182)
Q Consensus 60 ----------~~~~~~~D~~g~~~~~-----------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (182)
-..+.++||||.-+.+ ....=+...+|.|+++||+...+--++....+..+ ....
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL----kG~E 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL----KGHE 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh----hCCc
Confidence 0278999999943322 22333457899999999987655334444444333 3346
Q ss_pred CeEEEEeecCCCCCC
Q 030149 119 AVVLIFANKQDLPGA 133 (182)
Q Consensus 119 ~~iivv~nK~Dl~~~ 133 (182)
-.+-+|+||.|.+++
T Consensus 212 dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDT 226 (532)
T ss_pred ceeEEEeccccccCH
Confidence 678899999999854
No 332
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.10 E-value=2.1e-09 Score=77.32 Aligned_cols=138 Identities=18% Similarity=0.297 Sum_probs=79.6
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-----------cccccceeEEEEEE--c--CeEEEEEEcCCCCCCcc-
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-----------TIPTIGFNVETVQY--N--NIKFQVWDLGGQTSIRP- 76 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-----------~~~t~~~~~~~~~~--~--~~~~~~~D~~g~~~~~~- 76 (182)
...-.++|+++|+.|+|||||+|+|++..... ..++.......... + ..++.++||||..++..
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN 98 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN 98 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence 33678999999999999999999998763322 12333333333333 2 36789999999332211
Q ss_pred --hhh-----------hc------------c--CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCC
Q 030149 77 --YWR-----------CY------------F--PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQD 129 (182)
Q Consensus 77 --~~~-----------~~------------~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
.|. .| + ..+|+++|.+.++...--.-....+..+. ..+.+|-|+.|+|
T Consensus 99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls-----~~vNlIPVI~KaD 173 (373)
T COG5019 99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLS-----KRVNLIPVIAKAD 173 (373)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHh-----cccCeeeeeeccc
Confidence 110 01 1 24699999999764321111122333332 3577899999999
Q ss_pred CCCCCCHHHHHHHhccccccCCccEEE
Q 030149 130 LPGALDDAAVTEALELHKIKNRQWAIF 156 (182)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
..-..+...+.+...+. ....++++|
T Consensus 174 ~lT~~El~~~K~~I~~~-i~~~nI~vf 199 (373)
T COG5019 174 TLTDDELAEFKERIRED-LEQYNIPVF 199 (373)
T ss_pred cCCHHHHHHHHHHHHHH-HHHhCCcee
Confidence 87544444443333221 223345555
No 333
>PRK12289 GTPase RsgA; Reviewed
Probab=99.06 E-value=1.3e-09 Score=79.79 Aligned_cols=89 Identities=19% Similarity=0.160 Sum_probs=61.6
Q ss_pred hhccCCCCeEEEEEeCCCcc-hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEE
Q 030149 79 RCYFPNTQAIIYVVDSSDTE-RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFK 157 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
...+.++|.+++|+|+.++. ....+..++.... ..+.|+++|+||+|+..+.......+.+ ...+++++.
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~v~~ 154 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQPLF 154 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCeEEE
Confidence 34578999999999998775 3334445554432 2479999999999997432222222222 233567999
Q ss_pred ecccCCCChHHHHHHHHHH
Q 030149 158 TSAIKGEGLFEGLDWLSNT 176 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~~ 176 (182)
+||+++.|+++|++.+...
T Consensus 155 iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 155 ISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEcCCCCCHHHHhhhhccc
Confidence 9999999999999988653
No 334
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=3.6e-09 Score=76.56 Aligned_cols=117 Identities=15% Similarity=0.198 Sum_probs=71.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCccc----------ccccceeEEEEEE--c--CeEEEEEEcCCCCCCcc---
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVST----------IPTIGFNVETVQY--N--NIKFQVWDLGGQTSIRP--- 76 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~----------~~t~~~~~~~~~~--~--~~~~~~~D~~g~~~~~~--- 76 (182)
+.-.++++++|++|.|||||+|+|+...+... ..|..+....... + ..++.++||||..+...
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence 34569999999999999999999987644321 1133333334433 2 36788999999322111
Q ss_pred ----------------------hhhhccC--CCCeEEEEEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 77 ----------------------YWRCYFP--NTQAIIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 77 ----------------------~~~~~~~--~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
+....+. .+|+++|.+.+.... +..+. ..+..+ ...+.+|-|+-|+|..
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l-----~~~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKL-----SKKVNLIPVIAKADTL 171 (366)
T ss_pred cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHH-----hccccccceeeccccC
Confidence 0011222 579999999976432 12221 222222 1468899999999987
Q ss_pred CCCCH
Q 030149 132 GALDD 136 (182)
Q Consensus 132 ~~~~~ 136 (182)
.+.+.
T Consensus 172 T~~El 176 (366)
T KOG2655|consen 172 TKDEL 176 (366)
T ss_pred CHHHH
Confidence 54333
No 335
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.04 E-value=6e-10 Score=80.43 Aligned_cols=155 Identities=19% Similarity=0.119 Sum_probs=96.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-c----------------ccccceeEEEEEE------------------
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-T----------------IPTIGFNVETVQY------------------ 58 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~----------------~~t~~~~~~~~~~------------------ 58 (182)
.+..+.|+++|+.+.|||||+-.+.-+.... . .-+......-+-+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 3677999999999999999998886433211 0 1111121111111
Q ss_pred -----cCeEEEEEEcCCCCCCcchh--hhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 59 -----NNIKFQVWDLGGQTSIRPYW--RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 59 -----~~~~~~~~D~~g~~~~~~~~--~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
.+.-+.|+||.|++.+.... ...-++.|..++++.+++.-+ ...+...-+ ......|+++++||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi---~~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGI---ALAMELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhh---hhhhcCCEEEEEEecccC
Confidence 23468999999999876543 344567899999999977632 122222222 222478999999999997
Q ss_pred CCCCHHHHHH----Hhcc--------------------ccccCCccEEEEecccCCCChHHHHHHH
Q 030149 132 GALDDAAVTE----ALEL--------------------HKIKNRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 132 ~~~~~~~~~~----~~~~--------------------~~~~~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
.++....+.+ .+.. ......-.|+|.+|+.+|+|++-|.+.+
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 6533322222 2111 0111124689999999999987655443
No 336
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=99.03 E-value=2.9e-10 Score=76.83 Aligned_cols=136 Identities=24% Similarity=0.295 Sum_probs=92.5
Q ss_pred cccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC----------CCcchHHHHHHHHHHHHhhc
Q 030149 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS----------SDTERLVIAKDEFHAILEEE 114 (182)
Q Consensus 45 ~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~ 114 (182)
..||.|.....++.....++++|.+|+..-+..|..+++++-.+++++.. ++....++....+.-++.++
T Consensus 183 RvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yP 262 (359)
T KOG0085|consen 183 RVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 262 (359)
T ss_pred ecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccc
Confidence 35566777777777888999999999998888888888887776665543 34556777888888888888
Q ss_pred ccCCCeEEEEeecCCCCCCCCH-----------------HHHHHH-----hccccccCCc-cEEEEecccCCCChHHHHH
Q 030149 115 ELRGAVVLIFANKQDLPGALDD-----------------AAVTEA-----LELHKIKNRQ-WAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 115 ~~~~~~iivv~nK~Dl~~~~~~-----------------~~~~~~-----~~~~~~~~~~-~~~~~~S~~~~~gi~~l~~ 171 (182)
...+.++|+++||.|+.++... .+.... +......... +.--.+.|.+.+||.-+|.
T Consensus 263 WF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFa 342 (359)
T KOG0085|consen 263 WFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFA 342 (359)
T ss_pred cccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHH
Confidence 8889999999999998654111 011111 1111000111 1122355777889999999
Q ss_pred HHHHHHhhc
Q 030149 172 WLSNTLKSI 180 (182)
Q Consensus 172 ~l~~~~~~~ 180 (182)
.+.+.+.++
T Consensus 343 aVkDtiLq~ 351 (359)
T KOG0085|consen 343 AVKDTILQL 351 (359)
T ss_pred HHHHHHHHh
Confidence 888776543
No 337
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.02 E-value=8.7e-10 Score=70.89 Aligned_cols=52 Identities=25% Similarity=0.309 Sum_probs=38.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccc--eeEEEEEEcCeEEEEEEcCCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIG--FNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~D~~g~ 71 (182)
+++++|.+|+|||||+|++.+........+.+ .....+..++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 89999999999999999999887655333333 2233333333 6899999995
No 338
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.01 E-value=5.7e-10 Score=83.72 Aligned_cols=160 Identities=12% Similarity=0.204 Sum_probs=111.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccccccc-eeEEE--EEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG-FNVET--VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~-~~~~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
..+|+.|+|..++|||+|+.+++.+.+.....+.+ ..... +....+-+.+.|.+|... ..+-..+|++|+||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf 103 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVF 103 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEEE
Confidence 56999999999999999999999888887544444 22222 233567788888888433 23456789999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
...+..+++...........+......|.++++++.-.......-.......+.......+.+|++.+..|.++...|+.
T Consensus 104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~ 183 (749)
T KOG0705|consen 104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQE 183 (749)
T ss_pred EeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHH
Confidence 99999999988877776665555566788888887654322111111111111222345567999999999999999999
Q ss_pred HHHHHhhc
Q 030149 173 LSNTLKSI 180 (182)
Q Consensus 173 l~~~~~~~ 180 (182)
+...+..+
T Consensus 184 ~~~k~i~~ 191 (749)
T KOG0705|consen 184 VAQKIVQL 191 (749)
T ss_pred HHHHHHHH
Confidence 98876543
No 339
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.00 E-value=2.2e-09 Score=76.88 Aligned_cols=88 Identities=20% Similarity=0.201 Sum_probs=63.1
Q ss_pred hhccCCCCeEEEEEeCCCcc-hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEE
Q 030149 79 RCYFPNTQAIIYVVDSSDTE-RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFK 157 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
...+.++|.+++|+|+.++. ++..+..|+..+.. .+.|+++|+||+|+..+. +...... .....+.+++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~--~~~~~~~---~~~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDE--EEELELV---EALALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChH--HHHHHHH---HHHhCCCeEEE
Confidence 34477899999999999887 76776666665433 478999999999996541 1111111 11224568999
Q ss_pred ecccCCCChHHHHHHHHH
Q 030149 158 TSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~ 175 (182)
+|++++.|+++++..|..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999987753
No 340
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=9.6e-09 Score=69.91 Aligned_cols=143 Identities=15% Similarity=0.236 Sum_probs=78.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc----------ccccccee--EEEEEEcC--eEEEEEEcCCCCCC---cch
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS----------TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSI---RPY 77 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~----------~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~---~~~ 77 (182)
.-.++|+|+|.+|.|||||+|++....... +..|.... ...+.-++ .++.++||||..+. ...
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 346999999999999999999997543322 11122221 12222233 46788999993322 111
Q ss_pred h-----------------------hhccC--CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 78 W-----------------------RCYFP--NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 78 ~-----------------------~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
| ...+. .+++++|.+..+...--......+..+.+ -+.++-|+-|+|..-
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-----vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-----VVNVVPVIAKADTLT 198 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-----hheeeeeEeeccccc
Confidence 1 12222 36899999988654321111223333322 366899999999753
Q ss_pred CCCHHHHHHHhccccccCCccEEEEecccCC
Q 030149 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKG 163 (182)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (182)
-++...+.+..... +...++.+++--+.+.
T Consensus 199 leEr~~FkqrI~~e-l~~~~i~vYPq~~fde 228 (336)
T KOG1547|consen 199 LEERSAFKQRIRKE-LEKHGIDVYPQDSFDE 228 (336)
T ss_pred HHHHHHHHHHHHHH-HHhcCccccccccccc
Confidence 33333333333322 2234455555554443
No 341
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.97 E-value=2e-09 Score=78.17 Aligned_cols=59 Identities=24% Similarity=0.215 Sum_probs=47.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE-cCeEEEEEEcCCCC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~ 72 (182)
..+..+++|+|-|++||||+||+|.+.......+..|.+.....+ -+..+.++||||.-
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii 188 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGII 188 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCCcC
Confidence 356689999999999999999999999887777766766555444 34559999999943
No 342
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.97 E-value=3.4e-10 Score=78.34 Aligned_cols=160 Identities=13% Similarity=0.057 Sum_probs=94.1
Q ss_pred hhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc--cccccceeEE-EEEEcCeEEEEEEcCC----------CCCCcch
Q 030149 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVE-TVQYNNIKFQVWDLGG----------QTSIRPY 77 (182)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~t~~~~~~-~~~~~~~~~~~~D~~g----------~~~~~~~ 77 (182)
.++..+.+.+++.|.+++|||||+|.+...+... ..++.+-+.. ....-+..+.++|.|| ..++...
T Consensus 130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHh
Confidence 3445788999999999999999999998766543 2223332211 1112467899999999 1233444
Q ss_pred hhhccCCC---CeEEEEEeCCCc-chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC---H---HHHHHHhcc--
Q 030149 78 WRCYFPNT---QAIIYVVDSSDT-ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD---D---AAVTEALEL-- 145 (182)
Q Consensus 78 ~~~~~~~~---d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~---~---~~~~~~~~~-- 145 (182)
...|+.+. -.+.+.+|++-+ ...+.. ++......++|..+|.||||...... . ..+...++.
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~------~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNP------EIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChH------HHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 45555433 334555665443 111111 12222335899999999999753321 0 111111111
Q ss_pred ccccCCccEEEEecccCCCChHHHHHHHHHH
Q 030149 146 HKIKNRQWAIFKTSAIKGEGLFEGLDWLSNT 176 (182)
Q Consensus 146 ~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~ 176 (182)
........|++.+|+.++.|+++|.-.+...
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehhhh
Confidence 1112245668889999999999987665543
No 343
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.97 E-value=4e-09 Score=69.07 Aligned_cols=90 Identities=18% Similarity=0.103 Sum_probs=57.9
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
.++++|++++|+|+.++..- ....+...+.. ...++|+++|+||+|+.++.........+.. ......+++||
T Consensus 5 ~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~----~~~~~~~~iSa 77 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKK-EKPHKHLIFVLNKCDLVPTWVTARWVKILSK----EYPTIAFHASI 77 (157)
T ss_pred hhhhCCEEEEEEECCCCccc--cCHHHHHHHHh-ccCCCCEEEEEEchhcCCHHHHHHHHHHHhc----CCcEEEEEeec
Confidence 47789999999999886321 11223333322 1235899999999999643222222222221 11223688999
Q ss_pred cCCCChHHHHHHHHHHH
Q 030149 161 IKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~ 177 (182)
+.+.|++++.+.+.+.+
T Consensus 78 ~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 78 NNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cccccHHHHHHHHHHHH
Confidence 99999999999997764
No 344
>PRK12288 GTPase RsgA; Reviewed
Probab=98.96 E-value=4.4e-09 Score=77.01 Aligned_cols=89 Identities=28% Similarity=0.231 Sum_probs=63.9
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEeccc
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
..++|.+++|++...+.++..+..|+.... ..+.|+++|+||+|+..+.......+.... ....+.+++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCCCeEEEEeCC
Confidence 356899999999987778888877776442 246899999999999754322222222211 12235689999999
Q ss_pred CCCChHHHHHHHHHH
Q 030149 162 KGEGLFEGLDWLSNT 176 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~ 176 (182)
+++|+++|++.+...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999988754
No 345
>PRK00098 GTPase RsgA; Reviewed
Probab=98.96 E-value=4.1e-09 Score=75.97 Aligned_cols=85 Identities=24% Similarity=0.222 Sum_probs=58.5
Q ss_pred cCCCCeEEEEEeCCCcchHHHH-HHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 82 FPNTQAIIYVVDSSDTERLVIA-KDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
..++|++++|+|+.+++..... ..|+..+ .. .+.|+++|+||+|+... .+........ ....+.+++++||
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~--~~~~~~~~~~--~~~~g~~v~~vSA 149 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDD--LEEARELLAL--YRAIGYDVLELSA 149 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCC--HHHHHHHHHH--HHHCCCeEEEEeC
Confidence 5789999999999888765554 3444333 22 47899999999999632 2222111111 1223467999999
Q ss_pred cCCCChHHHHHHHH
Q 030149 161 IKGEGLFEGLDWLS 174 (182)
Q Consensus 161 ~~~~gi~~l~~~l~ 174 (182)
+++.|++++++.+.
T Consensus 150 ~~g~gi~~L~~~l~ 163 (298)
T PRK00098 150 KEGEGLDELKPLLA 163 (298)
T ss_pred CCCccHHHHHhhcc
Confidence 99999999998774
No 346
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.95 E-value=8.2e-09 Score=71.01 Aligned_cols=82 Identities=22% Similarity=0.229 Sum_probs=59.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC--ccc-ccccceeEEEEEEcCeEEEEEEcCCCCC-------CcchhhhccCCCCe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEV--VST-IPTIGFNVETVQYNNIKFQVWDLGGQTS-------IRPYWRCYFPNTQA 87 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~--~~~-~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d~ 87 (182)
-+|.++|-|.+||||++..+.+... ..+ ..|...-.....+.+-++++.|.||.-+ .........+.|++
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 5899999999999999999986432 222 2244455556678899999999999422 22234455678999
Q ss_pred EEEEEeCCCcch
Q 030149 88 IIYVVDSSDTER 99 (182)
Q Consensus 88 ii~v~d~~~~~s 99 (182)
+++|.|+..|-+
T Consensus 140 i~~vld~~kp~~ 151 (358)
T KOG1487|consen 140 IFIVLDVLKPLS 151 (358)
T ss_pred EEEEeeccCccc
Confidence 999999876543
No 347
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.94 E-value=4.1e-09 Score=75.62 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=43.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE-cCeEEEEEEcCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQT 72 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~ 72 (182)
...++++++|.||+|||||+|++.+.+.....+..+.+.....+ -+..+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGKGLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCCcEEEEECCCcC
Confidence 45689999999999999999999988776655555544433222 24568999999953
No 348
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.94 E-value=1.9e-09 Score=79.54 Aligned_cols=98 Identities=26% Similarity=0.233 Sum_probs=64.8
Q ss_pred CCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC-CHHHHHHHhcccccc
Q 030149 71 QTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL-DDAAVTEALELHKIK 149 (182)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~-~~~~~~~~~~~~~~~ 149 (182)
.+++..+...+.+.++++++|+|+.+... .|...+.+.. .+.|+++|+||+|+.... ..+...+..... .+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~-~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKR-AK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHH-HH
Confidence 45677777888889999999999976542 2333333222 267999999999996432 233333222111 11
Q ss_pred CCcc---EEEEecccCCCChHHHHHHHHHH
Q 030149 150 NRQW---AIFKTSAIKGEGLFEGLDWLSNT 176 (182)
Q Consensus 150 ~~~~---~~~~~S~~~~~gi~~l~~~l~~~ 176 (182)
..++ .++.+||++|.|++++++.+.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 1222 48999999999999999998764
No 349
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.93 E-value=5e-09 Score=68.54 Aligned_cols=56 Identities=29% Similarity=0.388 Sum_probs=42.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE-cCeEEEEEEcCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGG 70 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g 70 (182)
....+++++|.+++||||+++++.+.....+.++.+.+.....+ .+..+.+|||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 35688999999999999999999987766666666655332211 345799999999
No 350
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.92 E-value=4.5e-09 Score=74.98 Aligned_cols=56 Identities=23% Similarity=0.385 Sum_probs=41.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEE--EEEcCeEEEEEEcCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVET--VQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~ 71 (182)
.+.++++++|.||+|||||+|++.+.......+..+.+... +.. +..+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL-SDGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe-CCCEEEEECCCc
Confidence 35689999999999999999999987765544444433322 222 246899999996
No 351
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.4e-08 Score=76.98 Aligned_cols=145 Identities=15% Similarity=0.249 Sum_probs=83.8
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc--cccccce---------------------------------------
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGF--------------------------------------- 51 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~t~~~--------------------------------------- 51 (182)
..+...+|++.|..++||||++|+++..+..+ ..+++.+
T Consensus 105 l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~ 184 (749)
T KOG0448|consen 105 LARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDK 184 (749)
T ss_pred HhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccc
Confidence 34678999999999999999999998555433 1111100
Q ss_pred -----eEEEEEEc-------CeEEEEEEcCCC---CCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhccc
Q 030149 52 -----NVETVQYN-------NIKFQVWDLGGQ---TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEEL 116 (182)
Q Consensus 52 -----~~~~~~~~-------~~~~~~~D~~g~---~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~ 116 (182)
....+-+. .-.+.++|.||- +...........++|++|+|..+.+..+. ..+. ++.....
T Consensus 185 ~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~--sek~---Ff~~vs~ 259 (749)
T KOG0448|consen 185 DLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTL--SEKQ---FFHKVSE 259 (749)
T ss_pred ccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHH--HHHH---HHHHhhc
Confidence 00001111 126788899993 34445556677889999999998665332 2222 2222222
Q ss_pred CCCeEEEEeecCCCCCCC--CHHHHHHHh---ccccccCCccEEEEecccC
Q 030149 117 RGAVVLIFANKQDLPGAL--DDAAVTEAL---ELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 117 ~~~~iivv~nK~Dl~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~S~~~ 162 (182)
.+..++++-||+|..... ..+.+.+.. .-...+...-.++.+|++.
T Consensus 260 ~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 260 EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 356678888899986431 123332221 1112222344588888543
No 352
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.90 E-value=8.4e-09 Score=67.40 Aligned_cols=84 Identities=19% Similarity=0.147 Sum_probs=54.0
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
|++++|+|+.++.+... .++.. ......++|+++|+||+|+.++.........+. ......++.+||+++.|
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~----~~~~~~ii~vSa~~~~g 72 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER--VLIKEKGKKLILVLNKADLVPKEVLRKWLAYLR----HSYPTIPFKISATNGQG 72 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH--HHHhcCCCCEEEEEechhcCCHHHHHHHHHHHH----hhCCceEEEEeccCCcC
Confidence 78999999988754432 22221 111224789999999999964321111111121 11234589999999999
Q ss_pred hHHHHHHHHHHH
Q 030149 166 LFEGLDWLSNTL 177 (182)
Q Consensus 166 i~~l~~~l~~~~ 177 (182)
++++.+.+.+..
T Consensus 73 i~~L~~~i~~~~ 84 (155)
T cd01849 73 IEKKESAFTKQT 84 (155)
T ss_pred hhhHHHHHHHHh
Confidence 999999887653
No 353
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.89 E-value=9.1e-09 Score=70.88 Aligned_cols=84 Identities=37% Similarity=0.552 Sum_probs=64.8
Q ss_pred ccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc----------chHHHHHHHHHHHHhhcccC
Q 030149 48 TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT----------ERLVIAKDEFHAILEEEELR 117 (182)
Q Consensus 48 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~ 117 (182)
|.|.-..+++.+..+|..+|.+|+.+-+..|...+.++.++|+|+..+.- ..+.+....+..+.+....+
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 44555566677888999999999999999999999999999999986542 23444445556666555556
Q ss_pred CCeEEEEeecCCCC
Q 030149 118 GAVVLIFANKQDLP 131 (182)
Q Consensus 118 ~~~iivv~nK~Dl~ 131 (182)
...+|+++||.|+.
T Consensus 269 tisvIlFLNKqDll 282 (379)
T KOG0099|consen 269 TISVILFLNKQDLL 282 (379)
T ss_pred hhheeEEecHHHHH
Confidence 78899999999974
No 354
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.89 E-value=6.9e-09 Score=68.90 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=40.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEE--EEEcCeEEEEEEcCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVET--VQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~ 71 (182)
...++++++|.+|+|||||+|++.+.......+..+.+... +... ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 45579999999999999999999987765544333322222 2222 67899999994
No 355
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=6e-10 Score=81.35 Aligned_cols=114 Identities=19% Similarity=0.134 Sum_probs=85.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--------CC------c---c----cccccceeEEEEEEcCeEEEEEEcCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG--------EV------V---S----TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~--------~~------~---~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
.+..+|.|+.+..+||||.-++++.- .. . . ..-|+......+++++++++++||||+-+
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence 56789999999999999999998521 11 0 0 12244455666788999999999999999
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
|.-....+++-.|+++.|||++..-.-..+ ..|. +....+.|-+.++||+|....
T Consensus 115 f~leverclrvldgavav~dasagve~qtl-tvwr----qadk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTL-TVWR----QADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCccccee-eeeh----hccccCCchhhhhhhhhhhhh
Confidence 999999999999999999999775322222 2233 333357899999999998654
No 356
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=6.7e-09 Score=80.69 Aligned_cols=111 Identities=15% Similarity=0.161 Sum_probs=78.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCC------------cc---cccccceeEEE--E--EEcCeEEEEEEcCCCCCCc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEV------------VS---TIPTIGFNVET--V--QYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~------------~~---~~~t~~~~~~~--~--~~~~~~~~~~D~~g~~~~~ 75 (182)
....++.++.+...|||||..++...+- .. ...+.|.+... + -.+++.++++|+||+-+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 5668999999999999999999964321 11 12244444333 2 2278999999999999999
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCC
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 130 (182)
.......+-+|+.++.+|+...- ......++++....+...++|+||+|.
T Consensus 87 sevssas~l~d~alvlvdvvegv-----~~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGV-----CSQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhcCCcEEEEeecccc-----chhHHHHHHHHHHccCceEEEEehhhh
Confidence 99999999999999999986642 111122222222235668999999993
No 357
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.87 E-value=1.2e-08 Score=66.72 Aligned_cols=55 Identities=22% Similarity=0.303 Sum_probs=38.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccc--cccceeEEEEEEcCeEEEEEEcCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTI--PTIGFNVETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~g 70 (182)
....+++++|.+|+||||++|++.+....... +........+.. +..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL-DNKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe-cCCEEEEECCC
Confidence 46788999999999999999999986643322 211111222222 35799999999
No 358
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=2.6e-08 Score=71.08 Aligned_cols=144 Identities=17% Similarity=0.205 Sum_probs=94.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc-------CCCcc-----ccc-----ccceeEEEEEE--cCeEEEEEEcCCCCCCc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM-------GEVVS-----TIP-----TIGFNVETVQY--NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~-------~~~~~-----~~~-----t~~~~~~~~~~--~~~~~~~~D~~g~~~~~ 75 (182)
....||.-+|+...|||||-.++.. .++.. ..| .+.++...+.| ....+-=.|+||+.++-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 5679999999999999999888742 11111 111 33355566666 45667778999999988
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-----HHHHHHhccccccC
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-----AAVTEALELHKIKN 150 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~ 150 (182)
.....-...-|+.|+|+.+++... ...+..+.- .++.+ -..+++++||.|++++.+. -++++.+....+..
T Consensus 132 KNMItGaaqMDGaILVVaatDG~M-PQTrEHlLL-ArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPM-PQTREHLLL-ARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCC-cchHHHHHH-HHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 777766777899999999987542 222222222 22222 2568999999999854332 23344444555556
Q ss_pred CccEEEEecccC
Q 030149 151 RQWAIFKTSAIK 162 (182)
Q Consensus 151 ~~~~~~~~S~~~ 162 (182)
...|++.-||+.
T Consensus 208 d~~PvI~GSAL~ 219 (449)
T KOG0460|consen 208 DNTPVIRGSALC 219 (449)
T ss_pred CCCCeeecchhh
Confidence 678899888753
No 359
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.83 E-value=3.2e-08 Score=72.49 Aligned_cols=78 Identities=19% Similarity=0.148 Sum_probs=58.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC-cc--c-ccccceeEEEEEEcC-----------------eEEEEEEcCCCC----
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEV-VS--T-IPTIGFNVETVQYNN-----------------IKFQVWDLGGQT---- 72 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~-~~--~-~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~---- 72 (182)
++++++|.|++|||||.+.+.+... .. | ..|...+...+.+.+ ..+.++|.||-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999988765 32 2 224566666665533 368999999943
Q ss_pred ---CCcchhhhccCCCCeEEEEEeCC
Q 030149 73 ---SIRPYWRCYFPNTQAIIYVVDSS 95 (182)
Q Consensus 73 ---~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
.........++.+|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 23335556688999999999974
No 360
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=3.2e-08 Score=75.18 Aligned_cols=141 Identities=16% Similarity=0.128 Sum_probs=83.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
+..+-|+|+|+||+||||||.++...-.......+.--.-.+.....++.|.++|. +..++. ....-+|.+++.+|.
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVlLlIdg 143 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPS--DLHQMI-DVAKIADLVLLLIDG 143 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChH--HHHHHH-hHHHhhheeEEEecc
Confidence 45678889999999999999998743221111111100111233668899999993 323322 234568999999998
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC-CCHHHHHHHhcccccc--CCccEEEEecccC
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA-LDDAAVTEALELHKIK--NRQWAIFKTSAIK 162 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~S~~~ 162 (182)
.-. |+-..-.+..++..++. ..++-|+|+.|+... .......+.+...++. ..+..+|..|...
T Consensus 144 nfG--fEMETmEFLnil~~HGm--PrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 144 NFG--FEMETMEFLNILISHGM--PRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred ccC--ceehHHHHHHHHhhcCC--CceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 654 33233334444444332 336778999999643 3345555544433332 3566677777654
No 361
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.2e-08 Score=77.69 Aligned_cols=114 Identities=18% Similarity=0.127 Sum_probs=83.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCC-----cc----------------cccccceeEEEEEEcCeEEEEEEcCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEV-----VS----------------TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~-----~~----------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
.+..+|.+.-+-.+||||+-++++...- .. ..-|+......+.+.+++++++||||+-+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 5678999999999999999999863211 00 01122333344556799999999999999
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
|--.....++-.|+.++++|+...-. ......|.+..++ ++|.+.++||.|....
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~ry----~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKRY----NVPRICFINKMDRMGA 171 (721)
T ss_pred EEEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHhc----CCCeEEEEehhhhcCC
Confidence 98888888999999999999865421 2233555555554 8999999999997654
No 362
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.82 E-value=8.4e-09 Score=69.69 Aligned_cols=55 Identities=24% Similarity=0.373 Sum_probs=37.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCc--------ccccccceeEEEEEEc-CeEEEEEEcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVV--------STIPTIGFNVETVQYN-NIKFQVWDLGG 70 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~--------~~~~t~~~~~~~~~~~-~~~~~~~D~~g 70 (182)
+..+++++|.+|+|||||+|++.+.... ...+..+.+.....+. +..+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcC
Confidence 4578999999999999999999875421 2222333333333331 22689999999
No 363
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.82 E-value=1.9e-08 Score=65.85 Aligned_cols=65 Identities=18% Similarity=0.133 Sum_probs=38.1
Q ss_pred CeEEEEEEcCCCCCCcchhhh--------ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYWRC--------YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 130 (182)
.....++|+||-.+....... ..-..+.+++++|+.+....-.....+...+... -++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence 356789999997654443322 2334789999999755432211112222222322 3789999996
No 364
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.82 E-value=1.5e-07 Score=65.19 Aligned_cols=85 Identities=16% Similarity=0.112 Sum_probs=58.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--CCcc----cccccceeEEEEEE---cCeEEEEEEcCCCCCCcc------hhh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG--EVVS----TIPTIGFNVETVQY---NNIKFQVWDLGGQTSIRP------YWR 79 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~--~~~~----~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~------~~~ 79 (182)
.+..-|.|+|++++|||+|+|.+.+. .+.. ...|.|+-...... .+..+.++||+|..+... ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 55678999999999999999999988 5433 12255544444444 368999999999654322 122
Q ss_pred hccCC--CCeEEEEEeCCCcch
Q 030149 80 CYFPN--TQAIIYVVDSSDTER 99 (182)
Q Consensus 80 ~~~~~--~d~ii~v~d~~~~~s 99 (182)
..+.. ++++||..+......
T Consensus 85 ~~l~~llss~~i~n~~~~~~~~ 106 (224)
T cd01851 85 FALATLLSSVLIYNSWETILGD 106 (224)
T ss_pred HHHHHHHhCEEEEeccCcccHH
Confidence 22333 799999988765543
No 365
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=2.1e-09 Score=75.52 Aligned_cols=162 Identities=14% Similarity=0.080 Sum_probs=96.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc------cccccc--eeEEEE-----------------------------
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS------TIPTIG--FNVETV----------------------------- 56 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~------~~~t~~--~~~~~~----------------------------- 56 (182)
++..+||.-+|+.-.||||++.++.+-.... ..-|+. +.-..+
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 3677999999999999999999997533211 000110 000000
Q ss_pred EE--c----CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCC
Q 030149 57 QY--N----NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130 (182)
Q Consensus 57 ~~--~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 130 (182)
.. + -..+.|+|+||++-..+.+..-..--|+.++.+..+++.........+..+ +.. .-+.++++-||+|+
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav-eiM--~LkhiiilQNKiDl 191 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV-EIM--KLKHIIILQNKIDL 191 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH-HHh--hhceEEEEechhhh
Confidence 00 0 124688999998765554443333347777777765433222222222222 111 13668999999999
Q ss_pred CCCCCHHHHHHHhccc--cccCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 131 PGALDDAAVTEALELH--KIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 131 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
..+....+..+..+.. .....+.|++++||.-..|++-+.+++...++
T Consensus 192 i~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 192 IKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 8664443333332211 11235778999999999999999999988764
No 366
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.77 E-value=3.1e-08 Score=65.78 Aligned_cols=90 Identities=17% Similarity=0.058 Sum_probs=58.7
Q ss_pred hhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEE
Q 030149 77 YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIF 156 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
.....+.++|++++|+|+.++...... .+ .... .++|+++|+||+|+.++.......+.+. .....++
T Consensus 12 ~~~~~i~~aD~il~v~D~~~~~~~~~~--~i---~~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-----~~~~~vi 79 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRNP--LL---EKIL--GNKPRIIVLNKADLADPKKTKKWLKYFE-----SKGEKVL 79 (171)
T ss_pred HHHHHHhhCCEEEEEeeccCccCcCCh--hh---HhHh--cCCCEEEEEehhhcCChHHHHHHHHHHH-----hcCCeEE
Confidence 345568899999999999876432211 11 1111 2578999999999964311111111111 1123589
Q ss_pred EecccCCCChHHHHHHHHHHHh
Q 030149 157 KTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 157 ~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
.+|++++.|++++.+.+...+.
T Consensus 80 ~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 80 FVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred EEECCCcccHHHHHHHHHHHHH
Confidence 9999999999999999988753
No 367
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.76 E-value=4.4e-08 Score=69.89 Aligned_cols=82 Identities=24% Similarity=0.355 Sum_probs=61.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEc-----------------CeEEEEEEcCC----
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYN-----------------NIKFQVWDLGG---- 70 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~-----------------~~~~~~~D~~g---- 70 (182)
...++++|+|.|++|||||.|++.+..... ..| |++.+...+... ...+.++|++|
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 467899999999999999999998776544 333 777666665542 23689999998
Q ss_pred ---CCCCcchhhhccCCCCeEEEEEeCCC
Q 030149 71 ---QTSIRPYWRCYFPNTQAIIYVVDSSD 96 (182)
Q Consensus 71 ---~~~~~~~~~~~~~~~d~ii~v~d~~~ 96 (182)
.+...+.....++.+|+++.|+++..
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEecC
Confidence 23445556667889999999988644
No 368
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.75 E-value=5.1e-08 Score=69.64 Aligned_cols=91 Identities=19% Similarity=0.095 Sum_probs=61.2
Q ss_pred hhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEE
Q 030149 77 YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIF 156 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
.....++.+|++++|+|+..+.+... ..+...+ .++|+++|+||+|+.++.......+.+.. .+.+++
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-----~~~~vi 81 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-----KGIKAL 81 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH-----cCCeEE
Confidence 44556889999999999977644322 2222222 26899999999999643211222222211 234689
Q ss_pred EecccCCCChHHHHHHHHHHHhh
Q 030149 157 KTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 157 ~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
.+|++++.|++++.+.+.+.+.+
T Consensus 82 ~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 82 AINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred EEECCCcccHHHHHHHHHHHHHH
Confidence 99999999999999998887654
No 369
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=3.3e-08 Score=71.98 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=97.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC--------------------CCc--------------ccccccceeEEEEEEc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMG--------------------EVV--------------STIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~--------------------~~~--------------~~~~t~~~~~~~~~~~ 59 (182)
+....+++++|+..+||||+-..+... +-. ....|.+.....+.-.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 467899999999999999997776411 000 0122444555556667
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc---hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC-C
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE---RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL-D 135 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~-~ 135 (182)
..++.+.|+||+..+......-..++|.-++|+.+...+ .|+.--+--.+........-...|+++||+|-+... +
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence 889999999999998887777788899999999884322 222111111111111122246789999999975321 1
Q ss_pred H---HHHHHH----hc-cccccCCccEEEEecccCCCChHHHH
Q 030149 136 D---AAVTEA----LE-LHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 136 ~---~~~~~~----~~-~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
. ++.... +. ..+...+..-++++|..+|.++.+..
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 1 122111 11 11112245569999999999988754
No 370
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.72 E-value=6.6e-08 Score=70.09 Aligned_cols=152 Identities=22% Similarity=0.188 Sum_probs=89.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCc------------------c-cccccceeEEE--------------------EE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVV------------------S-TIPTIGFNVET--------------------VQ 57 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~------------------~-~~~t~~~~~~~--------------------~~ 57 (182)
..+|+|+|...+|||||+--+..+... + ...+.+...-- +.
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 479999999999999998776532211 1 12222211111 11
Q ss_pred E---cCeEEEEEEcCCCCCCcchhhhcc--CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 58 Y---NNIKFQVWDLGGQTSIRPYWRCYF--PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 58 ~---~~~~~~~~D~~g~~~~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
+ ...-+.|+|.+|++.+......-+ +-.|...+++-++.. .....+.. +.......+|+++|++|+|...
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEH---LgLALaL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEH---LGLALALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHh---hhhhhhhcCcEEEEEEeeccCc
Confidence 1 123578999999998766554433 235777777776443 11111111 1112224799999999999875
Q ss_pred CCCHHHHHHHhc----cc---------------------cccCCccEEEEecccCCCChHHHHHHH
Q 030149 133 ALDDAAVTEALE----LH---------------------KIKNRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 133 ~~~~~~~~~~~~----~~---------------------~~~~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
....++-.+.+. .. +....-+|+|.+|..+|+|++.|...|
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 433333222221 10 112346789999999999998765443
No 371
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=1.3e-07 Score=68.57 Aligned_cols=154 Identities=22% Similarity=0.244 Sum_probs=92.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-----------------ccc-------cccee--EEEEEE----------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-----------------TIP-------TIGFN--VETVQY---------- 58 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-----------------~~~-------t~~~~--~~~~~~---------- 58 (182)
--..+|+|+|.-.+|||||+--+..+.... ... +.|++ -..++|
T Consensus 165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 345899999999999999998886443211 011 11111 111222
Q ss_pred --cCeEEEEEEcCCCCCCcchhhhccCC--CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC
Q 030149 59 --NNIKFQVWDLGGQTSIRPYWRCYFPN--TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134 (182)
Q Consensus 59 --~~~~~~~~D~~g~~~~~~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 134 (182)
...-+.|+|.+|+.++.......+.. .|..++++.+...-.+.. +..+.-+ . ..+.|++++++|+|+..+.
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~-~---AL~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLI-A---ALNIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHH-H---HhCCCeEEEEEeeccccch
Confidence 12357999999998876655443332 588888888866533211 1111111 1 1379999999999998663
Q ss_pred CHHHHHH----Hhcc---------------------ccccCCccEEEEecccCCCChHHHHHHH
Q 030149 135 DDAAVTE----ALEL---------------------HKIKNRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 135 ~~~~~~~----~~~~---------------------~~~~~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
..+..-+ .+.. ......-.|+|.+|+.+|+|++-+...|
T Consensus 320 ~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 320 GLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred hHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 3322222 1111 1223345689999999999988765443
No 372
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.69 E-value=1.1e-06 Score=56.56 Aligned_cols=147 Identities=19% Similarity=0.269 Sum_probs=77.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEc--CeEEEEEEcC-CCC-----------C-------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYN--NIKFQVWDLG-GQT-----------S------- 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~D~~-g~~-----------~------- 73 (182)
...++|.|.|+||+||||++.++...--..-..--|+....+.-+ -..|.++|+. |.. .
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~ 82 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN 82 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence 356899999999999999999986321111111112222222222 2345556655 210 0
Q ss_pred ---Cc----chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccc
Q 030149 74 ---IR----PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELH 146 (182)
Q Consensus 74 ---~~----~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~ 146 (182)
+. ......++.+|++| +|-..+ ++.....+....+......+|.+.++++.+.. + -.+++...
T Consensus 83 v~~le~i~~~al~rA~~~aDvII--IDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr~-P-~v~~ik~~---- 152 (179)
T COG1618 83 VEGLEEIAIPALRRALEEADVII--IDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSRH-P-LVQRIKKL---- 152 (179)
T ss_pred HHHHHHHhHHHHHHHhhcCCEEE--Eecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccCC-h-HHHHhhhc----
Confidence 11 11123344567654 565444 33333444444454444688999999988642 1 22222211
Q ss_pred cccCCccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 147 KIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
....+| .+.+|-+.+++.+++.|..
T Consensus 153 ----~~v~v~----lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 153 ----GGVYVF----LTPENRNRILNEILSVLKG 177 (179)
T ss_pred ----CCEEEE----EccchhhHHHHHHHHHhcc
Confidence 111122 6666777899888887764
No 373
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.69 E-value=5.2e-08 Score=62.63 Aligned_cols=79 Identities=15% Similarity=0.145 Sum_probs=48.6
Q ss_pred hhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEe
Q 030149 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
...++.+|++++|+|+.++.+... ..+...+... ..++|+++|+||+|+.++.......+.+. ..+..++++
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~-~~~k~~iivlNK~DL~~~~~~~~~~~~~~-----~~~~~ii~i 77 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRP--PDLERYVKEV-DPRKKNILLLNKADLLTEEQRKAWAEYFK-----KEGIVVVFF 77 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhc-cCCCcEEEEEechhcCCHHHHHHHHHHHH-----hcCCeEEEE
Confidence 445788999999999988764331 1222222221 14789999999999964322222222222 223568999
Q ss_pred cccCCCC
Q 030149 159 SAIKGEG 165 (182)
Q Consensus 159 S~~~~~g 165 (182)
||+++.+
T Consensus 78 Sa~~~~~ 84 (141)
T cd01857 78 SALKENA 84 (141)
T ss_pred EecCCCc
Confidence 9998763
No 374
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.65 E-value=1.3e-07 Score=68.01 Aligned_cols=91 Identities=20% Similarity=0.135 Sum_probs=60.9
Q ss_pred hhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEE
Q 030149 77 YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIF 156 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
.....+..+|++++|+|+.++.+... ..+.... .++|+++|+||+|+.+....+...+.+. ..+.+++
T Consensus 17 ~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~-----~~~~~vi 84 (287)
T PRK09563 17 EIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFE-----EQGIKAL 84 (287)
T ss_pred HHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHH-----HcCCeEE
Confidence 34556889999999999977654222 2233322 2689999999999964311112222221 1135689
Q ss_pred EecccCCCChHHHHHHHHHHHhh
Q 030149 157 KTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 157 ~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
.+|++++.|++++.+.+.+.+.+
T Consensus 85 ~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 85 AINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred EEECCCcccHHHHHHHHHHHHHH
Confidence 99999999999999998887654
No 375
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.62 E-value=9.2e-07 Score=64.15 Aligned_cols=132 Identities=23% Similarity=0.176 Sum_probs=77.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCcc--------------cc-c------------ccceeEEEEEE-------------c
Q 030149 20 ILVLGLDNAGKTTILYRLQMGEVVS--------------TI-P------------TIGFNVETVQY-------------N 59 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~~~~~--------------~~-~------------t~~~~~~~~~~-------------~ 59 (182)
.++-|--||||||+++.++...... .. . +.|+-+.++.- +
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 5778999999999999997433211 00 0 22233333211 2
Q ss_pred CeEEEEEEcCCCCCCcchhhhccC--------CCCeEEEEEeCCCcchHHH-HHHHHHHHHhhcccCCCeEEEEeecCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFP--------NTQAIIYVVDSSDTERLVI-AKDEFHAILEEEELRGAVVLIFANKQDL 130 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~iivv~nK~Dl 130 (182)
.....++++.|-............ ..|.++-|+|+.+-..... ....+...+... -++++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccC
Confidence 356788899986665443332222 2488999999866543222 333444443332 3999999999
Q ss_pred CCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 131 PGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
.++...+....... ..++..+++.++.
T Consensus 158 v~~~~l~~l~~~l~---~lnp~A~i~~~~~ 184 (323)
T COG0523 158 VDAEELEALEARLR---KLNPRARIIETSY 184 (323)
T ss_pred CCHHHHHHHHHHHH---HhCCCCeEEEccc
Confidence 87643333333333 3456677888887
No 376
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.58 E-value=8.5e-08 Score=62.34 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=33.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCccc---ccc--cc----eeEEEEEEcCeEEEEEEcCCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVST---IPT--IG----FNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~---~~t--~~----~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
-.++++|++|+|||||+|++.+...... ... .| ....-+.. .....++||||..+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l-~~g~~iIDTPGf~~ 99 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL-PDGGYIIDTPGFRS 99 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE-TTSEEEECSHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec-CCCcEEEECCCCCc
Confidence 6899999999999999999987643221 111 11 11222222 33568999999444
No 377
>PRK12288 GTPase RsgA; Reviewed
Probab=98.57 E-value=1.5e-07 Score=69.02 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=35.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCccccc-----------ccceeEEEEEEcCeEEEEEEcCCCCCCc
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIP-----------TIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~-----------t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
.++++|.+|+|||||+|+|.+........ |..... +.+.. ...++||||..++.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l--~~l~~-~~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARL--YHFPH-GGDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEE--EEecC-CCEEEECCCCCccc
Confidence 47999999999999999999765433111 222222 22221 23599999976654
No 378
>PRK01889 GTPase RsgA; Reviewed
Probab=98.57 E-value=7.5e-07 Score=65.82 Aligned_cols=84 Identities=24% Similarity=0.239 Sum_probs=56.1
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEeccc
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
..++|.+++|+++..+-....+..++..... .+.+.++|+||+||.++ .++..+.+... ..+.+++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence 4688999999999644333333333333322 46778999999999754 22222222221 346789999999
Q ss_pred CCCChHHHHHHHH
Q 030149 162 KGEGLFEGLDWLS 174 (182)
Q Consensus 162 ~~~gi~~l~~~l~ 174 (182)
++.|+++|.+++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999988874
No 379
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.56 E-value=2e-07 Score=65.34 Aligned_cols=53 Identities=13% Similarity=0.116 Sum_probs=35.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcccc-----------cccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVSTI-----------PTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~~-----------~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
..++++|.+|+|||||+|++.+....... .|....... .. ...++||||...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~--l~--~~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFH--FH--GGLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEE--cC--CcEEEeCCCcccc
Confidence 47899999999999999999875432211 122333322 22 3489999996553
No 380
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.55 E-value=8.5e-07 Score=64.43 Aligned_cols=139 Identities=21% Similarity=0.196 Sum_probs=76.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC------CCcc-cccc---------------cceeEEEE-----------------
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG------EVVS-TIPT---------------IGFNVETV----------------- 56 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~------~~~~-~~~t---------------~~~~~~~~----------------- 56 (182)
+.-.++++|++|+||||++..+... +..- ...+ .+......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999998521 1100 0000 11111111
Q ss_pred EEcCeEEEEEEcCCCCCCcch----hhhc--------cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEE
Q 030149 57 QYNNIKFQVWDLGGQTSIRPY----WRCY--------FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIF 124 (182)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~~----~~~~--------~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv 124 (182)
...+..+.++||||....... .... -...+..++|+|++... +...+ ...+... -.+.-++
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~----~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA----VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh----CCCCEEE
Confidence 014568999999996543221 1111 12468899999997542 22322 2222221 2345788
Q ss_pred eecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 125 ANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 125 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
+||.|..... -.+..... ..+.|+..++ +|++++++.
T Consensus 266 lTKlD~t~~~--G~~l~~~~-----~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 266 LTKLDGTAKG--GVVFAIAD-----ELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EECCCCCCCc--cHHHHHHH-----HHCCCEEEEe--CCCChhhCc
Confidence 9999965331 12222221 1255677776 778887664
No 381
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.55 E-value=1.1e-06 Score=74.08 Aligned_cols=112 Identities=17% Similarity=0.161 Sum_probs=65.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCccc-----ccc--cceeEEEEEE-cCeEEEEEEcCCCCC--------Ccchhhhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVST-----IPT--IGFNVETVQY-NNIKFQVWDLGGQTS--------IRPYWRCY 81 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~-----~~t--~~~~~~~~~~-~~~~~~~~D~~g~~~--------~~~~~~~~ 81 (182)
.=.+|+|++|+||||++... +..+.-. ..+ .+-+. ..++ -..+-.++||+|..- -...|..+
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCCEEEEcCCCccccCCCcccccHHHHHHH
Confidence 34689999999999999987 3333211 111 11111 1111 234556999999321 12223322
Q ss_pred ---------cCCCCeEEEEEeCCCcch-----H----HHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 82 ---------FPNTQAIIYVVDSSDTER-----L----VIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 82 ---------~~~~d~ii~v~d~~~~~s-----~----~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
-+..|++|+++|+.+-.. . ..++..+.++.+.. ....|+.+++||+|+..
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l-g~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL-GARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecchhhc
Confidence 245799999999754321 1 23334444444333 35899999999999874
No 382
>PRK13796 GTPase YqeH; Provisional
Probab=98.55 E-value=2e-07 Score=69.07 Aligned_cols=95 Identities=21% Similarity=0.158 Sum_probs=57.0
Q ss_pred CcchhhhccCCCC-eEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC-CHHHHHHHhccccccCC
Q 030149 74 IRPYWRCYFPNTQ-AIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL-DDAAVTEALELHKIKNR 151 (182)
Q Consensus 74 ~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~ 151 (182)
+..... .+...+ .+++|+|+.+... .|...+.+.. .+.|+++|+||+|+.... ..+.+.+.... ..+..
T Consensus 59 ~~~~l~-~i~~~~~lIv~VVD~~D~~~-----s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~-~~k~~ 129 (365)
T PRK13796 59 FLKLLN-GIGDSDALVVNVVDIFDFNG-----SWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQ-EAKEL 129 (365)
T ss_pred HHHHHH-hhcccCcEEEEEEECccCCC-----chhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHH-HHHhc
Confidence 344333 345455 9999999977531 2222222221 267899999999996432 22233222111 11111
Q ss_pred cc---EEEEecccCCCChHHHHHHHHHHH
Q 030149 152 QW---AIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 152 ~~---~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
++ .++.+||+++.|++++++.+.+..
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 22 489999999999999999997653
No 383
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.54 E-value=1.1e-07 Score=71.31 Aligned_cols=54 Identities=20% Similarity=0.178 Sum_probs=45.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEE-EEEcCeEEEEEEcCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVET-VQYNNIKFQVWDLGG 70 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~D~~g 70 (182)
.+.|++||-|++||||+||+|.+.+....+.|.|-+..- .-+-...+.+.|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCCceecCCCC
Confidence 499999999999999999999999999988888844332 223567789999999
No 384
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.54 E-value=1.9e-07 Score=69.07 Aligned_cols=57 Identities=19% Similarity=0.405 Sum_probs=37.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC-----cccccccceeEEEEEEc-CeEEEEEEcCCCCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEV-----VSTIPTIGFNVETVQYN-NIKFQVWDLGGQTS 73 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~-----~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~ 73 (182)
..+|.++|.+|+|||||+|++.+... ....+..+.+.....+. +..+.++||||...
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIIN 216 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCC
Confidence 35899999999999999999987432 12233333333333332 24568999999654
No 385
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.54 E-value=1e-06 Score=57.03 Aligned_cols=58 Identities=12% Similarity=0.144 Sum_probs=36.6
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCC
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQD 129 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
+..+.++||+|..... ...+..+|.++++....-.+.+.-.+. ..+ ..--++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIKA---GIM------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhhh---hHh------hhcCEEEEeCCC
Confidence 5689999999854222 336778999999988763333222221 111 223488999998
No 386
>PRK12289 GTPase RsgA; Reviewed
Probab=98.53 E-value=2.5e-07 Score=67.97 Aligned_cols=54 Identities=22% Similarity=0.190 Sum_probs=34.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccc---------eeEEEEEEcCeEEEEEEcCCCCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIG---------FNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~---------~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
.++|+|.+|+|||||+|+|.+.......+..+ ....-+...+ ...++||||...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~-g~~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPN-GGLLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCC-CcEEEeCCCccc
Confidence 48999999999999999998765433221111 1122222222 237999999543
No 387
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.51 E-value=9.7e-07 Score=64.16 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=48.8
Q ss_pred eEEEEEEcCCCCCCcchhhhccC--------CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 61 IKFQVWDLGGQTSIRPYWRCYFP--------NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
....++++.|..+...+...... ..+.++.++|+.+..............+.. .-++++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCC
Confidence 45688999997765554443321 248899999986543211111122222222 2389999999986
Q ss_pred CCCHHHHHHHhccccccCCccEEEEec
Q 030149 133 ALDDAAVTEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
+ .+.+...+.. .++..++++++
T Consensus 165 ~--~~~~~~~l~~---lnp~a~i~~~~ 186 (318)
T PRK11537 165 E--AEKLRERLAR---INARAPVYTVV 186 (318)
T ss_pred H--HHHHHHHHHH---hCCCCEEEEec
Confidence 4 2344444332 34555666654
No 388
>PRK14974 cell division protein FtsY; Provisional
Probab=98.51 E-value=9.5e-07 Score=64.46 Aligned_cols=140 Identities=20% Similarity=0.216 Sum_probs=75.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc----C--CCcc-ccc---------------ccceeEEEE-----------------
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM----G--EVVS-TIP---------------TIGFNVETV----------------- 56 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~----~--~~~~-~~~---------------t~~~~~~~~----------------- 56 (182)
+...|+++|++|+||||++..+.. . +..- ... ..+......
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 357899999999999998877742 1 1100 000 011111100
Q ss_pred EEcCeEEEEEEcCCCCCCcchh----hhc--cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCC
Q 030149 57 QYNNIKFQVWDLGGQTSIRPYW----RCY--FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130 (182)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~~~----~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 130 (182)
...+..+.++||+|........ ... ....|.+++|+|+..... .......+... -..--+++||.|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~----~~~~giIlTKlD~ 291 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEA----VGIDGVILTKVDA 291 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhc----CCCCEEEEeeecC
Confidence 0124579999999966432211 111 235789999999865432 12222222211 1235788899998
Q ss_pred CCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 131 PGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
..... .-+..... .+.|+..++ +|++++++..
T Consensus 292 ~~~~G-~~ls~~~~------~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 292 DAKGG-AALSIAYV------IGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCCcc-HHHHHHHH------HCcCEEEEe--CCCChhhccc
Confidence 64322 22222211 245666665 7888877653
No 389
>PRK13796 GTPase YqeH; Provisional
Probab=98.50 E-value=3.4e-07 Score=67.88 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=35.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-----CcccccccceeEEEEEE-cCeEEEEEEcCCCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE-----VVSTIPTIGFNVETVQY-NNIKFQVWDLGGQT 72 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~-----~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~ 72 (182)
..++.++|.+|+|||||+|++.+.. .....+..|.+.....+ -+....++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCcc
Confidence 4589999999999999999998543 11122233333333322 12235899999953
No 390
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=2.3e-07 Score=64.72 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=70.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-----cccccceeEEEEEE--c--CeEEEEEEcCCCCC-------Ccc--
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-----TIPTIGFNVETVQY--N--NIKFQVWDLGGQTS-------IRP-- 76 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-----~~~t~~~~~~~~~~--~--~~~~~~~D~~g~~~-------~~~-- 76 (182)
.-.+||+.+|.+|.||||||.++.+-++.. ..|+......+.+. . ..++.++||.|..+ +..
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV 119 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV 119 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence 456999999999999999999999877654 22333333333333 2 35778999999211 110
Q ss_pred -----hhh-------------hcc--CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC
Q 030149 77 -----YWR-------------CYF--PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134 (182)
Q Consensus 77 -----~~~-------------~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 134 (182)
... ..+ ...++++|.+.++.. ++..+.-....-+. ..+.||-++-|.|.....
T Consensus 120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~Ld----skVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKLD----SKVNIIPVIAKADTISKE 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHHh----hhhhhHHHHHHhhhhhHH
Confidence 001 112 246889999987643 34433332222222 356788889999976543
No 391
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.47 E-value=3.6e-06 Score=59.94 Aligned_cols=97 Identities=14% Similarity=0.067 Sum_probs=54.1
Q ss_pred cCeEEEEEEcCCCCCCcchhh-------hc-----cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEee
Q 030149 59 NNIKFQVWDLGGQTSIRPYWR-------CY-----FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFAN 126 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~-------~~-----~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~n 126 (182)
.++.+.++||||......... .. -..+|.+++|+|+... .+.. .....+.+. -.+.-+++|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~-~~~~~f~~~----~~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNAL-EQAKVFNEA----VGLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHH-HHHHHHHhh----CCCCEEEEE
Confidence 357899999999765332211 11 1237999999999643 2222 222333222 124688899
Q ss_pred cCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 127 KQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 127 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
|.|...... .-+.... ..+.|+..++ +|++++++..
T Consensus 226 KlDe~~~~G-~~l~~~~------~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 226 KLDGTAKGG-IILSIAY------ELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred ccCCCCCcc-HHHHHHH------HHCcCEEEEe--CCCChHhCcc
Confidence 999854322 1111111 1135566666 7787777643
No 392
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.42 E-value=1.2e-07 Score=63.45 Aligned_cols=110 Identities=20% Similarity=0.177 Sum_probs=63.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-----CC-------Ccc------cccccceeEEEEEE---------------------c
Q 030149 19 RILVLGLDNAGKTTILYRLQM-----GE-------VVS------TIPTIGFNVETVQY---------------------N 59 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~-----~~-------~~~------~~~t~~~~~~~~~~---------------------~ 59 (182)
-++|.|..|||||||+++++. .+ +.. .....+.....+.. .
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~ 81 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREY 81 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhc
Confidence 368999999999999999983 11 110 00011122222210 2
Q ss_pred --CeEEEEEEcCCCCCCcchh--h---hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 60 --NIKFQVWDLGGQTSIRPYW--R---CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 60 --~~~~~~~D~~g~~~~~~~~--~---~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
.....++++.|......+. . ...-..+.+|.|+|+.+..........+...+... -++++||+|+.+
T Consensus 82 ~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A------DvIvlnK~D~~~ 155 (178)
T PF02492_consen 82 EERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA------DVIVLNKIDLVS 155 (178)
T ss_dssp HGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHH
T ss_pred CCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc------CEEEEeccccCC
Confidence 3577888999966555541 0 00123588999999866543334444444444433 389999999975
Q ss_pred CC
Q 030149 133 AL 134 (182)
Q Consensus 133 ~~ 134 (182)
..
T Consensus 156 ~~ 157 (178)
T PF02492_consen 156 DE 157 (178)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 393
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.42 E-value=3.7e-06 Score=63.18 Aligned_cols=109 Identities=18% Similarity=0.110 Sum_probs=62.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh------cCCCcc-----ccc-----------ccceeEEEEEE----------------
Q 030149 17 EARILVLGLDNAGKTTILYRLQ------MGEVVS-----TIP-----------TIGFNVETVQY---------------- 58 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~------~~~~~~-----~~~-----------t~~~~~~~~~~---------------- 58 (182)
...|+++|.+||||||++..+. +.+..- +.+ ..+........
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999985 222110 110 01111111100
Q ss_pred -cCeEEEEEEcCCCCCCcchhh----h--ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 59 -NNIKFQVWDLGGQTSIRPYWR----C--YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 59 -~~~~~~~~D~~g~~~~~~~~~----~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
.++.+.++||||.......+. . ....++.+++|+|+.-.+... .....+.+ .-.+.-+++||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~----~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKD----SVDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHh----ccCCcEEEEECccCC
Confidence 257899999999654432221 1 123578899999986553222 22222211 123567889999975
Q ss_pred C
Q 030149 132 G 132 (182)
Q Consensus 132 ~ 132 (182)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 3
No 394
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.36 E-value=4.2e-06 Score=56.22 Aligned_cols=117 Identities=11% Similarity=0.091 Sum_probs=59.7
Q ss_pred CeEEEEEEcCCCCCCcchh---h---hccCC---CCeEEEEEeCCCc-chHHHHHHHHHHHHhhcccCCCeEEEEeecCC
Q 030149 60 NIKFQVWDLGGQTSIRPYW---R---CYFPN---TQAIIYVVDSSDT-ERLVIAKDEFHAILEEEELRGAVVLIFANKQD 129 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~---~---~~~~~---~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
+-.+.++|+||+-+..... + .++.. --+++|++|..-- ++.......+.... ....-..|.|=|++|.|
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAls-AMi~lE~P~INvlsKMD 175 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALS-AMISLEVPHINVLSKMD 175 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHH-HHHHhcCcchhhhhHHH
Confidence 3478999999976543321 1 11222 2356777775221 22222222222221 11223689999999999
Q ss_pred CCCCCCHHHHHHHhcc---------------------------ccccCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 130 LPGALDDAAVTEALEL---------------------------HKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 130 l~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
|......+++.+.+.- ......=..|.+....+.+.++.++..|-.++
T Consensus 176 Llk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 176 LLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred HhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 9765333333222210 01111223467777777777776666665443
No 395
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.32 E-value=1.4e-06 Score=62.59 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=36.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcccc--c-----c--cceeEEEEEEcCeEEEEEEcCCCCCCc
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVSTI--P-----T--IGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~~--~-----t--~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
..++++|++|+|||||+|.+.+....... + . .......+.... ...++||||..++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCccC
Confidence 57999999999999999999875433211 1 0 111122222221 23689999976653
No 396
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=98.31 E-value=5.4e-06 Score=60.94 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
..-.++.|.-|||||||+++++..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 4 IPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 345788999999999999999743
No 397
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.30 E-value=3.5e-07 Score=66.79 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=49.5
Q ss_pred hhhc-CCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE-cCeEEEEEEcCCCC
Q 030149 10 SSLF-GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQT 72 (182)
Q Consensus 10 ~~~~-~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~ 72 (182)
..+. ..+.+.|+++|-|++||||+||+|...+.+...|-.|.+...-.+ -..++.++|+||.-
T Consensus 299 ~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPGvV 363 (572)
T KOG2423|consen 299 AKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPGVV 363 (572)
T ss_pred HhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCCcc
Confidence 4443 578899999999999999999999999999888876654332212 35688999999943
No 398
>PRK00098 GTPase RsgA; Reviewed
Probab=98.27 E-value=2.5e-06 Score=61.63 Aligned_cols=55 Identities=22% Similarity=0.104 Sum_probs=34.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcccccc-----c----ceeEEEEEEcCeEEEEEEcCCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPT-----I----GFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t-----~----~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
..++++|.+|+|||||+|++.+......... . ......+... ....++||||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~-~~~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLP-GGGLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcC-CCcEEEECCCcCc
Confidence 4789999999999999999987553321110 0 1111222222 2348899999654
No 399
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.25 E-value=1.9e-06 Score=61.27 Aligned_cols=54 Identities=19% Similarity=0.099 Sum_probs=34.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc---ccc--------ccceeEEEEEEcCeEEEEEEcCCCCCCc
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIP--------TIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~---~~~--------t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
..+++|.+|+|||||+|++.+..... .+. |.......+ ...-.++||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l---~~gG~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPL---PGGGWIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEc---CCCCEEEeCCCCCccC
Confidence 78899999999999999998643222 111 222222222 2345688999976654
No 400
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.24 E-value=4e-05 Score=56.99 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.-.+=++|+|+..+||||||.+|.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFM 38 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFM 38 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHH
Confidence 455789999999999999999994
No 401
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.24 E-value=9.3e-07 Score=64.50 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=46.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE-cCeEEEEEEcCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~ 71 (182)
.+.++|+|+|-|++||||+||++...+.+...++.|.+..--.. -+..+.+.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDKKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccCCceeccCCce
Confidence 57899999999999999999999999988877777755433222 5778999999993
No 402
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=2.1e-05 Score=58.23 Aligned_cols=118 Identities=15% Similarity=0.147 Sum_probs=61.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCC-------cc--ccccc---------------ceeEEEE-----------EEc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEV-------VS--TIPTI---------------GFNVETV-----------QYN 59 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~-------~~--~~~t~---------------~~~~~~~-----------~~~ 59 (182)
.+.-.++++|++|+||||++..|...-. .. ...+. +...... .+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 3456899999999999999999863210 00 00010 1111111 114
Q ss_pred CeEEEEEEcCCCCCCcchhh---h---ccCCCCeEEEEEeCCCcc-hHHHHHHHHHHHHhhcccC-CCeEEEEeecCCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYWR---C---YFPNTQAIIYVVDSSDTE-RLVIAKDEFHAILEEEELR-GAVVLIFANKQDLP 131 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~---~---~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~-~~~iivv~nK~Dl~ 131 (182)
+..+.++||+|......... . ......-.++|++++... ........+.......... ..+-=+++||.|..
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 66899999999664432211 1 122345668899986542 2222222222221110000 01235777999975
Q ss_pred C
Q 030149 132 G 132 (182)
Q Consensus 132 ~ 132 (182)
.
T Consensus 295 ~ 295 (374)
T PRK14722 295 S 295 (374)
T ss_pred C
Confidence 4
No 403
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.13 E-value=1.5e-05 Score=54.04 Aligned_cols=67 Identities=12% Similarity=0.066 Sum_probs=37.8
Q ss_pred CeEEEEEEcCCCCCCcchh----hhc--cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYW----RCY--FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~----~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
+..+.++||||........ ..+ ....+-+++|++++... +... ....+.... .+--+++||.|....
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~-~~~~~~~~~----~~~~lIlTKlDet~~ 155 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLE-QALAFYEAF----GIDGLILTKLDETAR 155 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHH-HHHHHHHHS----STCEEEEESTTSSST
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHH-HHHHHhhcc----cCceEEEEeecCCCC
Confidence 4679999999966543221 111 12578899999986653 2222 233332221 123566899997543
No 404
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.12 E-value=2.4e-05 Score=51.71 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
+|++.|++|+||||++.+++.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999863
No 405
>PRK13695 putative NTPase; Provisional
Probab=98.12 E-value=0.00025 Score=47.22 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++|++.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998643
No 406
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.10 E-value=7.9e-05 Score=49.54 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=39.1
Q ss_pred CeEEEEEEcCCCCCCcchh----hhc--cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYW----RCY--FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~----~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
+..+.++|+||........ ... ....+.+++|+|+..... .......+.+.. + ..-++.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 4578999999975332111 111 234899999999864432 223333333221 2 35777799997654
No 407
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.08 E-value=1.6e-05 Score=42.00 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=26.7
Q ss_pred CCCeEEEEEeCCCcchH--HHHHHHHHHHHhhcccCCCeEEEEeecCC
Q 030149 84 NTQAIIYVVDSSDTERL--VIAKDEFHAILEEEELRGAVVLIFANKQD 129 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
-.++++|++|++....+ +.....+..+.... .++|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 46899999999876544 44445555554433 3899999999998
No 408
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.03 E-value=1.9e-05 Score=58.44 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=60.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc-----------------------eeEEEE-----------EEcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-----------------------FNVETV-----------QYNN 60 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~-----------------------~~~~~~-----------~~~~ 60 (182)
+.-.|+++|++|+||||.+-.|...-... ....++ .....+ .+.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 47889999999999999998885332201 111111 111110 1246
Q ss_pred eEEEEEEcCCCCCCcchh----hhccCC--CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 61 IKFQVWDLGGQTSIRPYW----RCYFPN--TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~----~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
.++.++||.|........ ..++.. ..-+.++++++.. ...+...+.++.. - ..--+++||.|-.
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~----~-~i~~~I~TKlDET 351 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL----F-PIDGLIFTKLDET 351 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc----C-CcceeEEEccccc
Confidence 799999999976544322 222222 3445667777544 2334443333321 1 2235677999965
No 409
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=98.03 E-value=7e-05 Score=44.45 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=45.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcch-hhhccCCCCeEEEEEeCCCc
Q 030149 20 ILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY-WRCYFPNTQAIIYVVDSSDT 97 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~d~ii~v~d~~~~ 97 (182)
+++.|..|+||||+...+...-.. .+.....++ .+.++|+++....... .......+|.++++++....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 678899999999999888632211 111111111 8999999986544331 13446678999999987644
No 410
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.02 E-value=5.6e-05 Score=57.28 Aligned_cols=109 Identities=22% Similarity=0.246 Sum_probs=60.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc------CCCc-----cccc-----------ccceeEEEEE---------------E
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM------GEVV-----STIP-----------TIGFNVETVQ---------------Y 58 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~------~~~~-----~~~~-----------t~~~~~~~~~---------------~ 58 (182)
+...|+++|.+|+||||++..+.. .+.. .+.+ ..+....... .
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 467899999999999999988742 1110 0111 0011111000 0
Q ss_pred cCeEEEEEEcCCCCCCcchh------hhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 59 NNIKFQVWDLGGQTSIRPYW------RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
....+.++||||........ ......+|.+++|+|++... ........+... -...-+|+||.|..
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~----l~i~gvIlTKlD~~ 245 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA----VGIGGIIITKLDGT 245 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc----CCCCEEEEecccCC
Confidence 23489999999976543221 11234578999999986642 122222222111 11346777999964
No 411
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.01 E-value=0.00011 Score=46.90 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=26.0
Q ss_pred HHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 7 RLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
.+...........+++.|++|+|||++++.+...-
T Consensus 9 ~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 9 ALREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 33333333456689999999999999999997543
No 412
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=4.2e-05 Score=58.86 Aligned_cols=110 Identities=18% Similarity=0.200 Sum_probs=59.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--------CCcc-cccc---------------cceeEEEE-----------EEc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG--------EVVS-TIPT---------------IGFNVETV-----------QYN 59 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~--------~~~~-~~~t---------------~~~~~~~~-----------~~~ 59 (182)
.+.-.++++|++|+||||++..|... +..- ...+ .+...... ...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 34578999999999999999888531 1110 0001 11111111 013
Q ss_pred CeEEEEEEcCCCCCCcchhh------hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYWR------CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
+..+.++||+|......... .... ....++|++.... .......+..+.. ..+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss--~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAH--FSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCC--hhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 57899999999643322111 1111 2345677776532 3333333333321 245679999999754
No 413
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=5.1e-05 Score=56.41 Aligned_cols=111 Identities=19% Similarity=0.193 Sum_probs=60.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC------CCcc-----c-----------ccccceeEEEEE-----------E---c
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG------EVVS-----T-----------IPTIGFNVETVQ-----------Y---N 59 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~------~~~~-----~-----------~~t~~~~~~~~~-----------~---~ 59 (182)
+...|+++|++|+||||++..+... +..- + ....+....... . .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 4468999999999999999998521 1100 0 001111111110 0 1
Q ss_pred CeEEEEEEcCCCCCCcch----hhhcc--CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 60 NIKFQVWDLGGQTSIRPY----WRCYF--PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~----~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
+..+.++||+|....... ....+ ...+.+++|+|++-.. ......+..+.. -..--+++||.|....
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~-----~~idglI~TKLDET~k 392 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD-----IHIDGIVFTKFDETAS 392 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC-----CCCCEEEEEcccCCCC
Confidence 358999999996543221 11212 2357788999875332 222333333211 2334678899997653
No 414
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.97 E-value=6.9e-05 Score=53.50 Aligned_cols=90 Identities=26% Similarity=0.314 Sum_probs=59.3
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEeccc
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
+.+.|-.++++.+.+|+--.....-+.-..+. .+...++|+||+||..+..... +.. .......+.+++.+|++
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~--~~~-~~~y~~~gy~v~~~s~~ 150 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAV--KEL-LREYEDIGYPVLFVSAK 150 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHH--HHH-HHHHHhCCeeEEEecCc
Confidence 44578888888888886433333333333333 4677788899999986544332 111 11223457789999999
Q ss_pred CCCChHHHHHHHHHHH
Q 030149 162 KGEGLFEGLDWLSNTL 177 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~ 177 (182)
++.|++++.+.+...+
T Consensus 151 ~~~~~~~l~~~l~~~~ 166 (301)
T COG1162 151 NGDGLEELAELLAGKI 166 (301)
T ss_pred CcccHHHHHHHhcCCe
Confidence 9999999998876543
No 415
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.95 E-value=5.1e-05 Score=54.22 Aligned_cols=115 Identities=10% Similarity=0.070 Sum_probs=68.9
Q ss_pred hHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCC----------
Q 030149 5 FTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI---------- 74 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------- 74 (182)
+..++......+-.+++++|++|.|||+++++|.........+. .....+..+.+|.....
T Consensus 49 L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~---------~~~~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 49 LEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED---------AERIPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred HHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC---------CccccEEEEecCCCCChHHHHHHHHHH
Confidence 45566666667779999999999999999999986554322111 11336666777652221
Q ss_pred --------------cchhhhccCCCCeEEEEEeCCCc---chHHHHHHHHHHHHhhcccCCCeEEEEeecC
Q 030149 75 --------------RPYWRCYFPNTQAIIYVVDSSDT---ERLVIAKDEFHAILEEEELRGAVVLIFANKQ 128 (182)
Q Consensus 75 --------------~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 128 (182)
.......++...+=+++||--+. .+.......+..+......-..|+|.+|++-
T Consensus 120 lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 120 LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 11222345666777888984321 1223333333333333344578999998764
No 416
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=6.8e-05 Score=62.69 Aligned_cols=112 Identities=19% Similarity=0.168 Sum_probs=62.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCccc-----ccccceeEEEE-EEcCeEEEEEEcCCCC--------CCcchhhh----
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVST-----IPTIGFNVETV-QYNNIKFQVWDLGGQT--------SIRPYWRC---- 80 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~-----~~t~~~~~~~~-~~~~~~~~~~D~~g~~--------~~~~~~~~---- 80 (182)
=-+|+|++|+||||++..-.. +|.-. ....+...... -+-...-.++||.|.. .-...|..
T Consensus 127 Wy~viG~pgsGKTtal~~sgl-~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNSGL-QFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred ceEEecCCCCCcchHHhcccc-cCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 358999999999999865432 22111 00111110111 1134566788999932 11223332
Q ss_pred -----ccCCCCeEEEEEeCCCcch---------HHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 81 -----YFPNTQAIIYVVDSSDTER---------LVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 81 -----~~~~~d~ii~v~d~~~~~s---------~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
..+..|+||+++|+.+--+ ...++.-+.++... .....|+.+++||.|+..
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEecccccc
Confidence 2345799999999755221 11223334444333 335789999999999864
No 417
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.89 E-value=3.1e-05 Score=53.05 Aligned_cols=63 Identities=24% Similarity=0.249 Sum_probs=37.6
Q ss_pred EEEEEEcC-CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 62 KFQVWDLG-GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 62 ~~~~~D~~-g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
.+.++||- |.+.|. +...+++|.+|.|+|++-. ++... ..+..+.+... -+++.+|+||+|-.
T Consensus 135 e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~-sl~ta-eri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYK-SLRTA-ERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhhhc---cccccCCCEEEEEeCCcHH-HHHHH-HHHHHHHHHhC--CceEEEEEeeccch
Confidence 45566654 333332 2335689999999998743 32222 23333333321 38999999999954
No 418
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.89 E-value=2.8e-05 Score=55.37 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=39.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC-----CcccccccceeEEE---EEE-cCeEEEEEEcCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE-----VVSTIPTIGFNVET---VQY-NNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~-----~~~~~~t~~~~~~~---~~~-~~~~~~~~D~~g~ 71 (182)
....++.|+|-||+|||||+|++.... .....+..|.+... +.+ ....+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCc
Confidence 467999999999999999999985432 22233333433222 333 5567899999993
No 419
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.83 E-value=1.7e-05 Score=49.37 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030149 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.|+|.|++||||||+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999753
No 420
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.82 E-value=1.8e-05 Score=54.12 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=38.3
Q ss_pred CeEEEEEEcCCCCCCcchh------hhccCCCCeEEE---EEeC---CCcchHHHHHHHHHHHHhhcccCCCeEEEEeec
Q 030149 60 NIKFQVWDLGGQTSIRPYW------RCYFPNTQAIIY---VVDS---SDTERLVIAKDEFHAILEEEELRGAVVLIFANK 127 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~------~~~~~~~d~ii~---v~d~---~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK 127 (182)
...+.++|+|||-++.... ...+++.+.-+. .+|. ++|..|.... +.. +........|-|=|+.|
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~l--L~s-l~tMl~melphVNvlSK 172 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSL--LVS-LATMLHMELPHVNVLSK 172 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHH--HHH-HHHHHhhcccchhhhhH
Confidence 3468999999976543321 122333444444 4443 4454433221 111 12223346788889999
Q ss_pred CCCCCC
Q 030149 128 QDLPGA 133 (182)
Q Consensus 128 ~Dl~~~ 133 (182)
+|+...
T Consensus 173 ~Dl~~~ 178 (290)
T KOG1533|consen 173 ADLLKK 178 (290)
T ss_pred hHHHHh
Confidence 998654
No 421
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.82 E-value=6.6e-05 Score=49.68 Aligned_cols=51 Identities=20% Similarity=0.250 Sum_probs=32.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
...-+.|+|.+|||||||++++...-. ..+.....+......+.+ |.+|.+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~-----~~g~~vg~Ik~~~~~~~~-d~~g~D 55 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC-----ARGIRPGLIKHTHHDMDV-DKPGKD 55 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh-----hcCCeEEEEEEcCCCccc-CCCCcH
Confidence 345789999999999999999974421 123333444444444443 667643
No 422
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.81 E-value=7.9e-05 Score=55.52 Aligned_cols=95 Identities=22% Similarity=0.247 Sum_probs=56.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc------CCC-----ccccc-----------ccceeEEEE-------EE-------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM------GEV-----VSTIP-----------TIGFNVETV-------QY------- 58 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~------~~~-----~~~~~-----------t~~~~~~~~-------~~------- 58 (182)
.++..|+++|-.||||||.+-.+.. .+. ..|.| ..++.++.. ..
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 4567899999999999999888742 111 00222 111111111 00
Q ss_pred ---cCeEEEEEEcCCCCCCcchhh------hccCCCCeEEEEEeCCCcchHHHHHHHHHH
Q 030149 59 ---NNIKFQVWDLGGQTSIRPYWR------CYFPNTQAIIYVVDSSDTERLVIAKDEFHA 109 (182)
Q Consensus 59 ---~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~ 109 (182)
..+.+.|+||+|......... ...-+.|-+++|+|+.-.+.-.+....+.+
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e 237 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNE 237 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhh
Confidence 346899999999665544322 123467999999999776544444444433
No 423
>PRK10867 signal recognition particle protein; Provisional
Probab=97.81 E-value=0.00019 Score=54.42 Aligned_cols=65 Identities=20% Similarity=0.114 Sum_probs=36.4
Q ss_pred CeEEEEEEcCCCCCCcchhh----h--ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYWR----C--YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~----~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
++.+.++||||......... . ..-..+.+++|+|+... .+.......+... -...-+|+||.|..
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~----~~i~giIlTKlD~~ 253 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEA----LGLTGVILTKLDGD 253 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhh----CCCCEEEEeCccCc
Confidence 46799999999654322111 1 12256788999998543 2232333333221 12235677999964
No 424
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.81 E-value=0.00044 Score=49.29 Aligned_cols=129 Identities=19% Similarity=0.225 Sum_probs=72.3
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCccccc--------------------------------ccceeEEEEEE--
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIP--------------------------------TIGFNVETVQY-- 58 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~--------------------------------t~~~~~~~~~~-- 58 (182)
...+..--++.|--|+|||||+|.++.+....... ..|+-+.++..
T Consensus 53 ~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~g 132 (391)
T KOG2743|consen 53 LGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNG 132 (391)
T ss_pred CCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchH
Confidence 34566777889999999999999997443211100 22333444432
Q ss_pred -----------cCeEEEEEEcCCCCCCcchhhhccC--------CCCeEEEEEeCCCcch-HHHH--HHHHHHHHhhccc
Q 030149 59 -----------NNIKFQVWDLGGQTSIRPYWRCYFP--------NTQAIIYVVDSSDTER-LVIA--KDEFHAILEEEEL 116 (182)
Q Consensus 59 -----------~~~~~~~~D~~g~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s-~~~~--~~~~~~~~~~~~~ 116 (182)
+.....+.+|.|......+...+.. ..|+++-++|+-+..- +++. ...+.....+..
T Consensus 133 vraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA- 211 (391)
T KOG2743|consen 133 VRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIA- 211 (391)
T ss_pred HHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHh-
Confidence 3456788999996655444332221 2499999999744210 0000 011111111111
Q ss_pred CCCeEEEEeecCCCCCCCCHHHHHHHhc
Q 030149 117 RGAVVLIFANKQDLPGALDDAAVTEALE 144 (182)
Q Consensus 117 ~~~~iivv~nK~Dl~~~~~~~~~~~~~~ 144 (182)
..--+++||.|+.+......+.+...
T Consensus 212 --~AD~II~NKtDli~~e~~~~l~q~I~ 237 (391)
T KOG2743|consen 212 --LADRIIMNKTDLVSEEEVKKLRQRIR 237 (391)
T ss_pred --hhheeeeccccccCHHHHHHHHHHHH
Confidence 22367789999987755555555443
No 425
>PRK08118 topology modulation protein; Reviewed
Probab=97.80 E-value=2.1e-05 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+|+|+|++|||||||...+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999754
No 426
>PRK07261 topology modulation protein; Provisional
Probab=97.80 E-value=2.1e-05 Score=52.19 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+|+|+|++|||||||...+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998643
No 427
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=2.9e-05 Score=56.86 Aligned_cols=96 Identities=22% Similarity=0.330 Sum_probs=56.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc--------------CCCcc-------------cccccc----ee--------EEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM--------------GEVVS-------------TIPTIG----FN--------VET 55 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~--------------~~~~~-------------~~~t~~----~~--------~~~ 55 (182)
.+.--|+++|-.|+||||.+-.+.. +.|.. ..|-.+ .. ...
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 4567789999999999999988851 11100 011000 00 001
Q ss_pred EEEcCeEEEEEEcCCCCCCcchh----h--hccCCCCeEEEEEeCCCcchHHHHHHHHHHH
Q 030149 56 VQYNNIKFQVWDLGGQTSIRPYW----R--CYFPNTQAIIYVVDSSDTERLVIAKDEFHAI 110 (182)
Q Consensus 56 ~~~~~~~~~~~D~~g~~~~~~~~----~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 110 (182)
+...+..+.|+||.|...-.... . .-.-..|-+|+|+|++-.+.-......+..-
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 12246789999999954332211 1 1123579999999998776555554444443
No 428
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.79 E-value=2.2e-05 Score=52.35 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+|+|+|+|||||||+...+...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999866
No 429
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=5.5e-05 Score=56.94 Aligned_cols=110 Identities=14% Similarity=0.157 Sum_probs=59.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC-------Ccc--cccc---------------cceeEEEE-----------EEcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE-------VVS--TIPT---------------IGFNVETV-----------QYNN 60 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~-------~~~--~~~t---------------~~~~~~~~-----------~~~~ 60 (182)
+.-.++++|++|+||||++..+.+.. ... ...+ .+...... ...+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 44689999999999999999876421 000 0000 01111100 1145
Q ss_pred eEEEEEEcCCCCCCcch----hhhc--cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 61 IKFQVWDLGGQTSIRPY----WRCY--FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
....++||+|....... .... ....+-.++|+|++-.. ..+.+....+. .-.+-=+++||.|...
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f~-----~~~~~~~I~TKlDEt~ 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISAYQ-----GHGIHGCIITKVDEAA 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHHhc-----CCCCCEEEEEeeeCCC
Confidence 68899999996543221 1111 12345678899986432 22333333321 1223467789999754
No 430
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=4e-05 Score=58.07 Aligned_cols=125 Identities=14% Similarity=0.156 Sum_probs=77.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC------------Ccc---cccccceeEEEE--------------------EEc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE------------VVS---TIPTIGFNVETV--------------------QYN 59 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~------------~~~---~~~t~~~~~~~~--------------------~~~ 59 (182)
.+..|.-|+.+...|||||-.++...- +.. ..+..+.+..+. +..
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 455788999999999999999985321 111 111112222221 113
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC---CCCCH
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP---GALDD 136 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~---~~~~~ 136 (182)
+.-++++|.||+-+|.......++-.|+.+.|+|..+.--.. ....+.+.+. .....++++||.|.. -....
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQ-TETVLrQA~~----ERIkPvlv~NK~DRAlLELq~~~ 171 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ-TETVLRQAIA----ERIKPVLVMNKMDRALLELQLSQ 171 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEec-hHHHHHHHHH----hhccceEEeehhhHHHHhhcCCH
Confidence 456899999999999999999999999999999976542111 1122333322 234457788999952 12334
Q ss_pred HHHHHHhc
Q 030149 137 AAVTEALE 144 (182)
Q Consensus 137 ~~~~~~~~ 144 (182)
+++.+.++
T Consensus 172 EeLyqtf~ 179 (842)
T KOG0469|consen 172 EELYQTFQ 179 (842)
T ss_pred HHHHHHHH
Confidence 55544443
No 431
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.78 E-value=0.00016 Score=54.80 Aligned_cols=109 Identities=20% Similarity=0.258 Sum_probs=58.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC-------CCcc--cccc---------------cceeEEEE-----------EEcCeE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG-------EVVS--TIPT---------------IGFNVETV-----------QYNNIK 62 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~-------~~~~--~~~t---------------~~~~~~~~-----------~~~~~~ 62 (182)
-.++++|++|+||||++..+... .-.. ...+ .+...... ...+..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 47899999999999998877421 1000 0001 00000000 113568
Q ss_pred EEEEEcCCCCCCcc----hhhhccC---CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 63 FQVWDLGGQTSIRP----YWRCYFP---NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 63 ~~~~D~~g~~~~~~----~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
+.++||||...... .....+. ...-..+|++++.. ...+...+..+. . .+ +--+++||.|....
T Consensus 302 lVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~-~---~~-~~~vI~TKlDet~~ 372 (424)
T PRK05703 302 VILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFS-R---LP-LDGLIFTKLDETSS 372 (424)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhC-C---CC-CCEEEEeccccccc
Confidence 99999999754431 1222222 33566788887543 223333333331 1 11 23688999997543
No 432
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.76 E-value=0.00016 Score=54.81 Aligned_cols=65 Identities=18% Similarity=0.131 Sum_probs=37.1
Q ss_pred CeEEEEEEcCCCCCCcchhhh------ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYWRC------YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~------~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
+..+.++||||.......... ..-..+.+++|+|+...+ ........+.... ...-++.||.|..
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v----~i~giIlTKlD~~ 252 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL----GLTGVVLTKLDGD 252 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC----CCCEEEEeCccCc
Confidence 457999999996543221111 123478899999986442 2333333332211 2346668999954
No 433
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.76 E-value=3.3e-05 Score=41.83 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030149 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~ 38 (182)
..+|.|+.||||||++.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999874
No 434
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.00012 Score=55.02 Aligned_cols=110 Identities=17% Similarity=0.190 Sum_probs=59.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-------Cc-----cc-----------ccccceeEEEE----------EEcCeEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE-------VV-----ST-----------IPTIGFNVETV----------QYNNIKF 63 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~-------~~-----~~-----------~~t~~~~~~~~----------~~~~~~~ 63 (182)
...++++|++||||||++..|.... .. .+ ....+...... .-.+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568899999999999999986311 10 00 00111111111 0036688
Q ss_pred EEEEcCCCCCCcc----hhhhcc-----CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 64 QVWDLGGQTSIRP----YWRCYF-----PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 64 ~~~D~~g~~~~~~----~~~~~~-----~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
.++||+|...... .+...+ ....-.++|+|++-.. .........+ .. -.+--+++||.|-...
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~----~~~~glIlTKLDEt~~ 374 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ES----LNYRRILLTKLDEADF 374 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cC----CCCCEEEEEcccCCCC
Confidence 9999999653221 111111 1245688999986652 2222222222 11 2334678899997543
No 435
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=9.2e-05 Score=59.47 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
--++++|+.|+||||++..+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHh
Confidence 4689999999999999999863
No 436
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.72 E-value=3e-05 Score=49.78 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030149 20 ILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~ 39 (182)
|+++|++||||||+++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999973
No 437
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.71 E-value=8.1e-05 Score=56.96 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.--++++|+.|+||||++..|..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 35699999999999999999863
No 438
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.71 E-value=3.2e-05 Score=53.14 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+-=-|+|+|++|||||||++-+.+-.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 33468999999999999999997543
No 439
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.70 E-value=0.00011 Score=54.45 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.+.-.++++|++|+||||++..+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHH
Confidence 345678999999999999999985
No 440
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.70 E-value=0.00076 Score=50.53 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=60.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC----------CCcc-cccc---------------cceeEEEE-----------EE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG----------EVVS-TIPT---------------IGFNVETV-----------QY 58 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~----------~~~~-~~~t---------------~~~~~~~~-----------~~ 58 (182)
+...|+++|++|+||||.+..+... +..- ...+ .+...... ..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3468999999999999999888521 1100 0000 11111111 11
Q ss_pred cCeEEEEEEcCCCCCCcc----hhhhccCC---CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 59 NNIKFQVWDLGGQTSIRP----YWRCYFPN---TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~----~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
.+..+.++||+|...... .....+.. ..-.++|+|++.. ...+...+..+.. -.+-=+++||.|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----~~~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----FSYKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeccCC
Confidence 467899999999654322 11122221 2368899998765 2333333333311 12446788999975
Q ss_pred C
Q 030149 132 G 132 (182)
Q Consensus 132 ~ 132 (182)
.
T Consensus 326 ~ 326 (388)
T PRK12723 326 T 326 (388)
T ss_pred C
Confidence 4
No 441
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.68 E-value=5.4e-05 Score=51.35 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=22.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEV 42 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~ 42 (182)
.+-=.++++|++|||||||++.+..-..
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 3445789999999999999999975543
No 442
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.68 E-value=3.8e-05 Score=53.15 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-=-|.++|++|||||||++.+.+-.
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999997644
No 443
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.67 E-value=0.00012 Score=47.98 Aligned_cols=48 Identities=27% Similarity=0.477 Sum_probs=32.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
.+.++|.+|||||||++++... ....+.....+.+....+.+ |.+|..
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~-----l~~~g~~V~~iK~~~~~~~~-d~~g~D 50 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPA-----LSARGLRVAVIKHDHHDFDI-DTPGKD 50 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-----HHHcCCcEEEEEecCCcccc-cCccch
Confidence 5889999999999999999842 22234444555555555444 677643
No 444
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.67 E-value=0.00093 Score=42.79 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=58.6
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEE--E--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCC
Q 030149 21 LVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQ--Y--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSD 96 (182)
Q Consensus 21 ~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 96 (182)
+.-|..|+|||++.-.+...-... ... ......+ . -.+.+.++|+|+.. .......+..+|.++++.+.+.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~-~~~--~~~vd~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~ 78 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKL-GKR--VLLLDADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP 78 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHC-CCc--EEEEECCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh
Confidence 455788999999977764211000 000 0000000 0 11789999999853 3334456888999999999763
Q ss_pred cchHHHHHHHHHHHHhhcccCCCeEEEEeecCCC
Q 030149 97 TERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130 (182)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 130 (182)
.++......+..+.... ...++.+++|+++.
T Consensus 79 -~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 79 -TSITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred -hHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 33443334443332221 34577899999974
No 445
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.67 E-value=0.00029 Score=42.61 Aligned_cols=81 Identities=17% Similarity=0.114 Sum_probs=47.3
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCcccccccceeEEEEEE-cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc
Q 030149 20 ILVLG-LDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT 97 (182)
Q Consensus 20 v~v~G-~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
|++.| ..|+||||+...+...-.. .+....-++. ....+.++|+|+..... ....+..+|.++++++.+ .
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~-~ 73 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKRVLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPS-P 73 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCcEEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCC-H
Confidence 56666 5589999998777421110 0111111111 11778999999865432 335677799999999875 3
Q ss_pred chHHHHHHHHH
Q 030149 98 ERLVIAKDEFH 108 (182)
Q Consensus 98 ~s~~~~~~~~~ 108 (182)
.++......+.
T Consensus 74 ~s~~~~~~~~~ 84 (104)
T cd02042 74 LDLDGLEKLLE 84 (104)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 446
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.66 E-value=0.00013 Score=48.42 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=28.9
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
|++++|+|+.++.+..+ ..+..... ....++|+++|+||+|+.++
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~-l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVL-QAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHH-hccCCCCEEEEEehhhcCCH
Confidence 78999999987643211 22222211 11236899999999999754
No 447
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.65 E-value=5.7e-05 Score=42.19 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030149 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~ 40 (182)
|++.|++||||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999744
No 448
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.64 E-value=3.3e-05 Score=50.87 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030149 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~ 40 (182)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999754
No 449
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.63 E-value=5.9e-05 Score=51.76 Aligned_cols=26 Identities=27% Similarity=0.209 Sum_probs=23.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..+...|+|.|++|||||||.+.+..
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999999865
No 450
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.61 E-value=5.8e-05 Score=48.10 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+.-.++|+|+.|+|||||++.+.+..
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 34578999999999999999998654
No 451
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.59 E-value=5.9e-05 Score=52.48 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
-...++++|+|++|||||+|+..++..
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 366789999999999999999998754
No 452
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.57 E-value=0.0001 Score=49.71 Aligned_cols=33 Identities=27% Similarity=0.249 Sum_probs=25.1
Q ss_pred HHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 7 RLFSSLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.++.... ...-.++++|++||||||+++.+++.
T Consensus 16 ~~l~~~v-~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 16 AYLWLAV-EARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHHHHH-hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3444333 34568999999999999999999754
No 453
>PRK08233 hypothetical protein; Provisional
Probab=97.56 E-value=8.3e-05 Score=49.72 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.+-|+|.|.+||||||+.+.+..
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 357789999999999999999974
No 454
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.56 E-value=6.5e-05 Score=47.89 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=23.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+..+||+|.|.||+|||||.+++...
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHH
Confidence 56789999999999999999999743
No 455
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.55 E-value=0.00042 Score=49.33 Aligned_cols=111 Identities=19% Similarity=0.171 Sum_probs=61.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC-----CCcc-----------------cccccceeEEEE--------------EEc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG-----EVVS-----------------TIPTIGFNVETV--------------QYN 59 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~-----~~~~-----------------~~~t~~~~~~~~--------------~~~ 59 (182)
+.-+++++|++|+||||++..+... .... +....++..... ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 3479999999999999998887432 1000 000111111110 002
Q ss_pred CeEEEEEEcCCCCCCcch----hhhc--cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 60 NIKFQVWDLGGQTSIRPY----WRCY--FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
+..+.++||||....... +... ....+.+++|+|++-.. .........+.. -.+--+++||.|....
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~-----~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD-----IHIDGIVFTKFDETAS 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC-----CCCCEEEEEeecCCCC
Confidence 568999999997643221 1111 12457789999985431 223333333311 2345778899997653
No 456
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.55 E-value=0.00064 Score=47.32 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=24.5
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....+.-++++.|+.|+||||++.++..
T Consensus 47 l~G~pannvLL~G~rGtGKSSlVkall~ 74 (249)
T PF05673_consen 47 LQGLPANNVLLWGARGTGKSSLVKALLN 74 (249)
T ss_pred HcCCCCcceEEecCCCCCHHHHHHHHHH
Confidence 4456788999999999999999999973
No 457
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.55 E-value=0.00021 Score=51.60 Aligned_cols=110 Identities=20% Similarity=0.251 Sum_probs=62.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--------------CCcc----c----ccccceeEEE---------EEE-----
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG--------------EVVS----T----IPTIGFNVET---------VQY----- 58 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~--------------~~~~----~----~~t~~~~~~~---------~~~----- 58 (182)
.+..-++++|-.|+||||-+-.+... .|.. . ....++.... +-+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 45788999999999999999988521 1100 0 0011111111 111
Q ss_pred ---cCeEEEEEEcCCCCCCcchhh-------hccC-----CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEE
Q 030149 59 ---NNIKFQVWDLGGQTSIRPYWR-------CYFP-----NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLI 123 (182)
Q Consensus 59 ---~~~~~~~~D~~g~~~~~~~~~-------~~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iiv 123 (182)
.++.+.++||+|.-.-..... ..+. ..+-+++++|+.-.+.--...+.+..... --=+
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~-------l~Gi 289 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG-------LDGI 289 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC-------CceE
Confidence 467899999999543322111 1122 23558889999776433333333333322 2367
Q ss_pred EeecCCCC
Q 030149 124 FANKQDLP 131 (182)
Q Consensus 124 v~nK~Dl~ 131 (182)
++||.|..
T Consensus 290 IlTKlDgt 297 (340)
T COG0552 290 ILTKLDGT 297 (340)
T ss_pred EEEecccC
Confidence 78999964
No 458
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.54 E-value=8.8e-05 Score=50.85 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=22.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++..-|+|+|++|||||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 5567899999999999999999974
No 459
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.54 E-value=8.1e-05 Score=47.70 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.|.|+|+.|||||||+..+++
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 460
>PRK14530 adenylate kinase; Provisional
Probab=97.52 E-value=0.0001 Score=50.88 Aligned_cols=23 Identities=43% Similarity=0.514 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..+|+|+|+|||||||+.+.+..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999863
No 461
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.52 E-value=0.00011 Score=46.61 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEV 42 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~ 42 (182)
...++++|++|+|||+++..+...-.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Confidence 35789999999999999999975443
No 462
>PRK06217 hypothetical protein; Validated
Probab=97.52 E-value=9.3e-05 Score=49.70 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+|+|+|.+||||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999754
No 463
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.52 E-value=0.00012 Score=52.59 Aligned_cols=31 Identities=23% Similarity=0.126 Sum_probs=23.8
Q ss_pred HhhhhcCCcccEEEEEcCCCCCHHHHHHHHh
Q 030149 8 LFSSLFGNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 8 ~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
|+........+-|+|.|++||||||+++.+.
T Consensus 53 f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 53 FLGTNGAKIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred HHhcccCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3333334567899999999999999998764
No 464
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.52 E-value=0.00011 Score=54.09 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=23.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
....+|+|.|++|||||||++++++.
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcc
Confidence 46789999999999999999999854
No 465
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.51 E-value=8.9e-05 Score=46.72 Aligned_cols=21 Identities=38% Similarity=0.403 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030149 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~ 40 (182)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999754
No 466
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.51 E-value=9.6e-05 Score=47.23 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030149 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~ 40 (182)
|+++|++|||||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 467
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.49 E-value=0.00011 Score=44.64 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 030149 17 EARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.-.++++|++|||||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3568999999999999999986
No 468
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.49 E-value=0.00011 Score=49.49 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
.++++|++||||||+++.+....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999997543
No 469
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.48 E-value=0.00078 Score=41.01 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=53.4
Q ss_pred EcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE-cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchH
Q 030149 23 LGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERL 100 (182)
Q Consensus 23 ~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~ 100 (182)
=+..|+||||+...+...-... ... ......+. ....+.++|+|+.... .....+..+|.++++.+.+. .+.
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~---~~l~d~d~~~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~-~s~ 79 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRR---VLLVDLDLQFGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL-PSI 79 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCc---EEEEECCCCCCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-HHH
Confidence 3557899999877764211000 000 00000000 1128999999986543 33445678999999998753 344
Q ss_pred HHHHHHHHHHHhhcccC-CCeEEEEeec
Q 030149 101 VIAKDEFHAILEEEELR-GAVVLIFANK 127 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~~~-~~~iivv~nK 127 (182)
.........+.+. ... ...+.+|+|+
T Consensus 80 ~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 80 RNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 4444444444332 222 4467777775
No 470
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.48 E-value=9.8e-05 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-++++|++|||||||++.+.+-.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999997644
No 471
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.47 E-value=0.0001 Score=46.22 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030149 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~ 40 (182)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999644
No 472
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.47 E-value=0.0001 Score=49.23 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030149 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.++|+|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999998654
No 473
>PRK05439 pantothenate kinase; Provisional
Probab=97.47 E-value=0.00015 Score=52.45 Aligned_cols=34 Identities=21% Similarity=0.076 Sum_probs=26.8
Q ss_pred HHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 6 TRLFSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 6 ~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..|+........+-|+|.|++||||||+.+.+..
T Consensus 75 ~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 75 EQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred HHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3355444556789999999999999999998854
No 474
>PRK01889 GTPase RsgA; Reviewed
Probab=97.46 E-value=0.00013 Score=54.17 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEV 42 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~ 42 (182)
-+++++|.+|+|||||+|.+.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4799999999999999999986543
No 475
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.46 E-value=0.00056 Score=49.95 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
...+++|.|++||||||++++++..
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999753
No 476
>PRK03839 putative kinase; Provisional
Probab=97.46 E-value=0.00013 Score=48.88 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030149 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+|+++|.+||||||+.+.+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999643
No 477
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.46 E-value=0.00013 Score=49.13 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+..-|+++|++|||||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 34558999999999999999997653
No 478
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.45 E-value=0.00013 Score=48.81 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=16.9
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHh
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.......++|.|++|+|||+|++++.
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~ 45 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALL 45 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 44566889999999999999999875
No 479
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.45 E-value=0.00013 Score=48.38 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...-.|+|+|++|+|||||+|-+.+
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHh
Confidence 3445799999999999999999864
No 480
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.44 E-value=0.00015 Score=49.70 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+..-|+|+|++|||||||++.+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35567889999999999999999754
No 481
>PHA00729 NTP-binding motif containing protein
Probab=97.43 E-value=0.00023 Score=49.06 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=24.0
Q ss_pred hhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 10 SSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 10 ~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.+....-.+|++.|+||+|||+|..++..
T Consensus 10 ~~l~~~~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 10 SAYNNNGFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHhcCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 334444556999999999999999999865
No 482
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.43 E-value=0.00015 Score=48.78 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 030149 17 EARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~ 38 (182)
...|+++|++||||||+++.+.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999997
No 483
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.43 E-value=0.00012 Score=49.77 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030149 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~ 40 (182)
|+|.|++|||||||++.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999653
No 484
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.43 E-value=0.00014 Score=46.44 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.|+++|++|+|||++++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 485
>PLN02674 adenylate kinase
Probab=97.42 E-value=0.00016 Score=50.62 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....+|+++|+|||||+|+...+..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 3458899999999999999999864
No 486
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.41 E-value=0.0012 Score=47.04 Aligned_cols=31 Identities=35% Similarity=0.437 Sum_probs=24.0
Q ss_pred hhhcCCcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 10 SSLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 10 ~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
........-.|+|.|++||||||++++++..
T Consensus 73 ~~~~~~~~GlilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 73 RKLLEKPHGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred HHHHhcCCCEEEEECCCCCcHHHHHHHHHhh
Confidence 3333345557999999999999999998654
No 487
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.00014 Score=48.74 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
-=-|+++|++|||||||+|-+.+
T Consensus 31 ge~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 31 GELVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred CCEEEEEcCCCccHHHHHHHHhc
Confidence 34689999999999999999865
No 488
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00015 Score=49.94 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
=-|+++|++|+|||||++++.+
T Consensus 31 E~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred cEEEEECCCCCcHHHHHHHHhc
Confidence 4589999999999999999976
No 489
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.40 E-value=0.00015 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030149 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.++++|++||||||+++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999864
No 490
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.39 E-value=0.00014 Score=49.43 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030149 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~ 40 (182)
-|+|+|++||||||+++.+...
T Consensus 3 lilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998643
No 491
>PTZ00301 uridine kinase; Provisional
Probab=97.39 E-value=0.00018 Score=49.36 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=20.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
+.+-|+|.|++|||||||.+.+.
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~ 24 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIV 24 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHH
Confidence 45779999999999999998774
No 492
>PRK06547 hypothetical protein; Provisional
Probab=97.38 E-value=0.0003 Score=46.73 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=25.0
Q ss_pred hhcCCcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 11 SLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+........|+|.|.+||||||+.+.+...
T Consensus 9 ~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 9 RLCGGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HhhcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 344577888999999999999999999754
No 493
>PRK14531 adenylate kinase; Provisional
Probab=97.38 E-value=0.00018 Score=48.29 Aligned_cols=22 Identities=45% Similarity=0.505 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+|+++|+|||||||+...+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 494
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.38 E-value=0.00018 Score=48.01 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=21.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+--.++++|+.|+|||||++.+..
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4556899999999999999998863
No 495
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.38 E-value=0.00017 Score=48.13 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=22.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
.+.-.++++|+.|+|||||++.+.+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345578999999999999999998654
No 496
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.37 E-value=0.00014 Score=50.27 Aligned_cols=20 Identities=35% Similarity=0.287 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030149 20 ILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~ 39 (182)
|+|.|++|||||||++.+.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 68999999999999999864
No 497
>PRK14532 adenylate kinase; Provisional
Probab=97.37 E-value=0.00018 Score=48.44 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++|+++|+|||||||+...+..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999974
No 498
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.36 E-value=0.00015 Score=53.25 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....+|+|.|++|||||||+++++.
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~ 182 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALR 182 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999999974
No 499
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.35 E-value=0.00075 Score=51.48 Aligned_cols=88 Identities=26% Similarity=0.195 Sum_probs=47.5
Q ss_pred hhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE---cCeEEEEEEcCCCCCCcchhhhccCCC
Q 030149 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 9 ~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (182)
+.+....+.--++|.|++||||||.+.+++..-...... +-.-...+++ +-..+++.+-.|......+....=++.
T Consensus 250 ~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~n-I~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDP 328 (500)
T COG2804 250 LLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNTPERN-IITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDP 328 (500)
T ss_pred HHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCce-EEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhccCC
Confidence 344555777889999999999999999997654433211 1111222233 234555555555443333333322345
Q ss_pred CeEEEEEeCCCcc
Q 030149 86 QAIIYVVDSSDTE 98 (182)
Q Consensus 86 d~ii~v~d~~~~~ 98 (182)
|++ +|--+.|.+
T Consensus 329 DvI-mVGEIRD~E 340 (500)
T COG2804 329 DVI-MVGEIRDLE 340 (500)
T ss_pred CeE-EEeccCCHH
Confidence 543 344444433
No 500
>PRK13949 shikimate kinase; Provisional
Probab=97.35 E-value=0.00019 Score=47.52 Aligned_cols=21 Identities=43% Similarity=0.529 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
+|+++|++||||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
Done!