Query 030149
Match_columns 182
No_of_seqs 150 out of 1462
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 14:54:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zj6_A ADP-ribosylation factor 100.0 6.8E-39 2.3E-43 215.1 20.8 179 1-180 1-179 (187)
2 1moz_A ARL1, ADP-ribosylation 100.0 7.9E-39 2.7E-43 213.9 19.2 180 1-180 1-181 (183)
3 2x77_A ADP-ribosylation factor 100.0 1.2E-38 4.2E-43 214.2 20.1 180 1-180 3-185 (189)
4 2b6h_A ADP-ribosylation factor 100.0 3.6E-38 1.2E-42 212.4 19.2 176 4-179 16-191 (192)
5 1ksh_A ARF-like protein 2; sma 100.0 1.3E-37 4.5E-42 208.6 21.5 178 1-180 3-181 (186)
6 1upt_A ARL1, ADP-ribosylation 100.0 2.6E-36 8.9E-41 199.5 23.1 166 15-180 5-170 (171)
7 1fzq_A ADP-ribosylation factor 100.0 2.9E-37 9.8E-42 206.2 18.5 167 15-181 14-180 (181)
8 1r8s_A ADP-ribosylation factor 100.0 1.1E-36 3.9E-41 200.0 19.6 163 18-180 1-163 (164)
9 1m2o_B GTP-binding protein SAR 100.0 2.2E-36 7.5E-41 203.4 20.2 173 4-176 9-189 (190)
10 4dkx_A RAS-related protein RAB 100.0 7.7E-38 2.6E-42 213.6 11.9 161 13-179 9-176 (216)
11 1f6b_A SAR1; gtpases, N-termin 100.0 2.8E-36 9.5E-41 204.1 18.3 171 7-177 14-197 (198)
12 1zd9_A ADP-ribosylation factor 100.0 6.8E-36 2.3E-40 200.6 19.1 168 14-181 19-187 (188)
13 2h17_A ADP-ribosylation factor 100.0 6.6E-36 2.2E-40 199.6 18.5 164 13-176 17-180 (181)
14 4bas_A ADP-ribosylation factor 100.0 1.5E-35 5.1E-40 200.5 19.8 168 13-180 13-190 (199)
15 2h57_A ADP-ribosylation factor 100.0 4.7E-35 1.6E-39 196.8 19.4 169 13-181 17-189 (190)
16 3o47_A ADP-ribosylation factor 100.0 1.8E-34 6.2E-39 208.6 18.9 167 14-180 162-328 (329)
17 3lvq_E ARF-GAP with SH3 domain 100.0 4.3E-33 1.5E-37 211.8 20.9 166 15-180 320-485 (497)
18 3q72_A GTP-binding protein RAD 100.0 6.6E-34 2.3E-38 187.1 13.1 160 17-180 2-165 (166)
19 3t5g_A GTP-binding protein RHE 100.0 2.1E-33 7.1E-38 187.3 13.5 162 15-181 4-171 (181)
20 1ek0_A Protein (GTP-binding pr 100.0 9.6E-34 3.3E-38 186.8 11.1 159 16-179 2-169 (170)
21 3ihw_A Centg3; RAS, centaurin, 100.0 4.8E-33 1.6E-37 186.2 14.4 160 13-181 16-182 (184)
22 2nzj_A GTP-binding protein REM 100.0 4.3E-33 1.5E-37 184.7 13.0 161 15-180 2-170 (175)
23 1c1y_A RAS-related protein RAP 100.0 4E-32 1.4E-36 178.6 16.9 159 16-178 2-166 (167)
24 3oes_A GTPase rhebl1; small GT 100.0 2.6E-33 8.8E-38 189.9 11.0 162 14-180 21-188 (201)
25 4dsu_A GTPase KRAS, isoform 2B 100.0 5.1E-32 1.7E-36 181.6 16.9 162 15-180 2-167 (189)
26 2fn4_A P23, RAS-related protei 100.0 8.2E-33 2.8E-37 184.2 12.8 163 13-180 5-173 (181)
27 1x3s_A RAS-related protein RAB 100.0 7.9E-32 2.7E-36 181.5 17.3 161 15-180 13-179 (195)
28 2hxs_A RAB-26, RAS-related pro 100.0 1E-32 3.4E-37 183.4 12.5 162 14-180 3-174 (178)
29 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.4E-31 4.9E-36 177.7 18.0 163 14-180 4-175 (177)
30 3kkq_A RAS-related protein M-R 100.0 1.2E-31 3.9E-36 179.1 17.5 162 13-179 14-182 (183)
31 1u8z_A RAS-related protein RAL 100.0 1.3E-32 4.6E-37 180.9 12.8 160 15-179 2-167 (168)
32 2hup_A RAS-related protein RAB 100.0 1.1E-31 3.6E-36 182.0 17.5 160 15-180 27-194 (201)
33 3tkl_A RAS-related protein RAB 100.0 4.7E-32 1.6E-36 182.8 15.3 160 15-180 14-180 (196)
34 2efe_B Small GTP-binding prote 100.0 2.9E-32 9.8E-37 181.7 13.8 162 13-180 8-176 (181)
35 2g6b_A RAS-related protein RAB 100.0 2.5E-32 8.6E-37 181.8 13.4 161 14-180 7-175 (180)
36 3reg_A RHO-like small GTPase; 100.0 4.4E-32 1.5E-36 182.9 14.6 161 15-181 21-190 (194)
37 2bov_A RAla, RAS-related prote 100.0 4.7E-32 1.6E-36 184.2 14.9 164 11-179 8-177 (206)
38 1r2q_A RAS-related protein RAB 100.0 1.2E-32 4.3E-37 181.5 11.7 159 14-178 3-168 (170)
39 1z08_A RAS-related protein RAB 100.0 2.8E-32 9.7E-37 179.9 13.4 159 15-179 4-169 (170)
40 2fu5_C RAS-related protein RAB 100.0 9.6E-33 3.3E-37 184.4 11.2 160 15-180 6-172 (183)
41 2gf9_A RAS-related protein RAB 100.0 4.4E-32 1.5E-36 182.1 14.3 161 14-180 19-186 (189)
42 3tw8_B RAS-related protein RAB 100.0 3.6E-32 1.2E-36 181.1 13.7 159 15-180 7-172 (181)
43 3q85_A GTP-binding protein REM 100.0 1.9E-32 6.6E-37 180.6 12.2 160 17-181 2-169 (169)
44 1g16_A RAS-related protein SEC 100.0 8.3E-32 2.9E-36 177.6 15.1 160 16-180 2-166 (170)
45 1kao_A RAP2A; GTP-binding prot 100.0 9.7E-33 3.3E-37 181.5 10.4 159 16-179 2-166 (167)
46 2atv_A RERG, RAS-like estrogen 100.0 1.1E-31 3.9E-36 181.1 15.8 166 9-180 20-192 (196)
47 1z0j_A RAB-22, RAS-related pro 100.0 4.2E-32 1.4E-36 179.0 13.4 159 15-179 4-169 (170)
48 2ew1_A RAS-related protein RAB 100.0 2.3E-32 7.9E-37 185.2 12.2 159 15-179 24-189 (201)
49 3bc1_A RAS-related protein RAB 100.0 3.3E-31 1.1E-35 178.3 17.8 162 14-180 8-186 (195)
50 2fg5_A RAB-22B, RAS-related pr 100.0 2.8E-31 9.7E-36 178.6 17.4 160 15-180 21-187 (192)
51 2iwr_A Centaurin gamma 1; ANK 100.0 4.9E-32 1.7E-36 180.2 13.4 157 15-180 5-170 (178)
52 2bcg_Y Protein YP2, GTP-bindin 100.0 9.7E-32 3.3E-36 182.8 15.1 160 15-180 6-172 (206)
53 1vg8_A RAS-related protein RAB 100.0 3E-31 1E-35 180.4 17.4 162 14-179 5-175 (207)
54 1z0f_A RAB14, member RAS oncog 100.0 4.3E-32 1.5E-36 180.4 12.7 160 14-179 12-178 (179)
55 1z06_A RAS-related protein RAB 100.0 1.4E-32 4.9E-37 184.5 10.3 162 13-179 16-188 (189)
56 2a9k_A RAS-related protein RAL 100.0 3.8E-32 1.3E-36 181.8 12.3 162 14-180 15-182 (187)
57 3q3j_B RHO-related GTP-binding 100.0 2E-32 6.7E-37 187.3 10.8 160 14-180 24-204 (214)
58 2oil_A CATX-8, RAS-related pro 100.0 8.3E-32 2.8E-36 181.3 13.7 160 15-180 23-189 (193)
59 3cph_A RAS-related protein SEC 100.0 3.4E-31 1.2E-35 180.8 16.9 161 14-179 17-182 (213)
60 1zbd_A Rabphilin-3A; G protein 100.0 8.4E-32 2.9E-36 182.6 13.8 159 15-179 6-171 (203)
61 2a5j_A RAS-related protein RAB 100.0 4E-32 1.4E-36 182.7 12.1 160 15-180 19-185 (191)
62 2bme_A RAB4A, RAS-related prot 100.0 7.7E-32 2.6E-36 180.4 13.4 159 15-179 8-173 (186)
63 1ky3_A GTP-binding protein YPT 100.0 7.2E-32 2.4E-36 179.8 13.1 163 14-180 5-179 (182)
64 1z2a_A RAS-related protein RAB 100.0 2.1E-31 7.1E-36 175.4 15.1 158 15-179 3-167 (168)
65 3clv_A RAB5 protein, putative; 100.0 1.4E-30 4.7E-35 176.7 19.6 158 15-180 5-205 (208)
66 2ce2_X GTPase HRAS; signaling 100.0 5.1E-31 1.7E-35 173.0 16.8 160 16-179 2-165 (166)
67 3t1o_A Gliding protein MGLA; G 100.0 1.5E-31 5.1E-36 180.5 14.6 162 12-180 9-193 (198)
68 3con_A GTPase NRAS; structural 100.0 7.3E-31 2.5E-35 176.3 17.7 164 13-181 17-185 (190)
69 3cbq_A GTP-binding protein REM 100.0 3.3E-32 1.1E-36 183.6 11.0 163 14-181 20-190 (195)
70 2p5s_A RAS and EF-hand domain 100.0 1.5E-31 5.2E-36 180.9 14.1 164 11-180 22-198 (199)
71 2y8e_A RAB-protein 6, GH09086P 100.0 2.9E-32 9.8E-37 181.3 10.0 160 15-180 12-178 (179)
72 4djt_A GTP-binding nuclear pro 100.0 1.1E-31 3.6E-36 184.1 13.1 162 14-180 8-176 (218)
73 3c5c_A RAS-like protein 12; GD 100.0 6E-32 2.1E-36 181.3 11.4 161 13-179 17-186 (187)
74 2fh5_B SR-beta, signal recogni 100.0 3.8E-31 1.3E-35 180.9 15.5 163 15-177 5-214 (214)
75 3cpj_B GTP-binding protein YPT 100.0 1.8E-31 6.2E-36 183.6 13.8 160 15-180 11-177 (223)
76 3dz8_A RAS-related protein RAB 100.0 1.1E-32 3.6E-37 185.5 7.4 160 15-180 21-187 (191)
77 2il1_A RAB12; G-protein, GDP, 100.0 6.8E-31 2.3E-35 176.8 15.8 161 15-180 24-191 (192)
78 2atx_A Small GTP binding prote 100.0 3.3E-30 1.1E-34 173.6 18.7 157 15-178 16-192 (194)
79 2erx_A GTP-binding protein DI- 100.0 4.7E-32 1.6E-36 179.0 9.5 160 16-180 2-168 (172)
80 2gco_A H9, RHO-related GTP-bin 100.0 3.8E-31 1.3E-35 179.2 14.0 165 13-179 21-200 (201)
81 2o52_A RAS-related protein RAB 100.0 7E-32 2.4E-36 182.7 10.3 159 15-179 23-188 (200)
82 2fv8_A H6, RHO-related GTP-bin 100.0 2.8E-30 9.7E-35 175.7 18.0 165 14-180 22-201 (207)
83 4gzl_A RAS-related C3 botulinu 100.0 3.4E-31 1.2E-35 179.9 13.1 164 12-177 25-203 (204)
84 2f7s_A C25KG, RAS-related prot 100.0 3.5E-32 1.2E-36 186.3 8.3 160 15-179 23-199 (217)
85 2g3y_A GTP-binding protein GEM 100.0 3.2E-31 1.1E-35 180.5 12.4 161 15-180 35-204 (211)
86 2gf0_A GTP-binding protein DI- 100.0 5.7E-31 1.9E-35 177.9 13.6 162 15-180 6-172 (199)
87 1m7b_A RND3/RHOE small GTP-bin 100.0 2.3E-30 7.7E-35 173.1 16.1 159 15-179 5-183 (184)
88 3gj0_A GTP-binding nuclear pro 100.0 2.3E-31 7.8E-36 182.8 11.5 161 13-180 11-176 (221)
89 1mh1_A RAC1; GTP-binding, GTPa 100.0 7.9E-31 2.7E-35 175.3 13.5 164 15-180 3-181 (186)
90 2j1l_A RHO-related GTP-binding 100.0 4.8E-31 1.6E-35 180.4 12.6 165 14-180 31-210 (214)
91 3bwd_D RAC-like GTP-binding pr 100.0 1.7E-31 5.9E-36 178.0 10.0 158 14-178 5-180 (182)
92 2yc2_C IFT27, small RAB-relate 100.0 3.4E-31 1.2E-35 180.1 11.6 160 15-179 18-192 (208)
93 2j0v_A RAC-like GTP-binding pr 100.0 2.3E-30 7.7E-35 176.7 15.4 159 15-180 7-181 (212)
94 2q3h_A RAS homolog gene family 100.0 6.7E-30 2.3E-34 173.0 17.5 162 13-180 16-196 (201)
95 2lkc_A Translation initiation 100.0 6.5E-30 2.2E-34 169.8 16.6 162 13-180 4-172 (178)
96 1gwn_A RHO-related GTP-binding 100.0 6.6E-30 2.3E-34 173.6 16.1 159 15-179 26-204 (205)
97 3llu_A RAS-related GTP-binding 100.0 1.2E-30 4.1E-35 176.2 12.1 163 12-177 15-195 (196)
98 3l0i_B RAS-related protein RAB 100.0 2.5E-32 8.7E-37 184.8 3.2 163 15-181 31-198 (199)
99 2cjw_A GTP-binding protein GEM 100.0 3.6E-30 1.2E-34 173.2 12.2 160 15-179 4-172 (192)
100 2zej_A Dardarin, leucine-rich 100.0 1.9E-30 6.3E-35 173.6 9.2 162 17-180 2-179 (184)
101 1svi_A GTP-binding protein YSX 100.0 1.6E-29 5.6E-34 170.3 11.0 161 12-178 18-194 (195)
102 2qu8_A Putative nucleolar GTP- 100.0 8.7E-29 3E-33 170.7 14.3 163 15-180 27-206 (228)
103 3th5_A RAS-related C3 botulinu 99.9 1.4E-31 4.6E-36 181.8 0.0 164 12-177 25-203 (204)
104 3pqc_A Probable GTP-binding pr 100.0 4E-29 1.4E-33 168.2 10.1 163 12-179 18-194 (195)
105 3r7w_B Gtpase2, GTP-binding pr 100.0 8.7E-29 3E-33 176.3 12.1 156 19-178 1-173 (331)
106 2gj8_A MNME, tRNA modification 100.0 2.4E-28 8.1E-33 161.7 13.3 153 15-179 2-166 (172)
107 3r7w_A Gtpase1, GTP-binding pr 100.0 2.5E-28 8.4E-33 175.1 14.4 161 16-177 2-179 (307)
108 2dyk_A GTP-binding protein; GT 100.0 3E-28 1E-32 159.2 13.1 147 18-177 2-160 (161)
109 2wji_A Ferrous iron transport 100.0 2.3E-28 7.9E-33 160.7 11.4 148 16-178 2-164 (165)
110 3iev_A GTP-binding protein ERA 100.0 3.2E-27 1.1E-31 169.4 15.5 162 12-179 5-182 (308)
111 2wkq_A NPH1-1, RAS-related C3 100.0 3.4E-27 1.2E-31 171.0 15.8 163 15-179 153-330 (332)
112 2cxx_A Probable GTP-binding pr 100.0 1.4E-28 4.7E-33 165.0 7.6 161 18-181 2-186 (190)
113 3c5h_A Glucocorticoid receptor 100.0 6.2E-28 2.1E-32 168.9 10.8 162 13-178 15-254 (255)
114 2f9l_A RAB11B, member RAS onco 100.0 2.9E-27 1E-31 159.9 13.4 159 15-179 3-168 (199)
115 3a1s_A Iron(II) transport prot 99.9 2.5E-27 8.6E-32 165.9 11.1 149 15-178 3-166 (258)
116 4dhe_A Probable GTP-binding pr 99.9 1.6E-27 5.4E-32 163.8 8.8 164 12-180 24-212 (223)
117 1wf3_A GTP-binding protein; GT 99.9 1.9E-26 6.6E-31 164.6 14.4 156 15-178 5-172 (301)
118 3iby_A Ferrous iron transport 99.9 1.7E-27 6E-32 166.4 7.7 144 18-176 2-164 (256)
119 2wjg_A FEOB, ferrous iron tran 99.9 6.7E-27 2.3E-31 156.6 10.1 151 15-180 5-170 (188)
120 1oix_A RAS-related protein RAB 99.9 3.9E-26 1.3E-30 153.4 13.6 158 15-177 27-190 (191)
121 3i8s_A Ferrous iron transport 99.9 1.3E-27 4.5E-32 168.8 5.4 148 16-178 2-168 (274)
122 2hjg_A GTP-binding protein ENG 99.9 1.5E-26 5E-31 173.2 10.7 159 16-179 174-349 (436)
123 3gee_A MNME, tRNA modification 99.9 9.5E-26 3.2E-30 169.5 13.5 155 15-178 231-397 (476)
124 3k53_A Ferrous iron transport 99.9 9E-25 3.1E-29 154.2 16.7 151 16-180 2-167 (271)
125 3b1v_A Ferrous iron uptake tra 99.9 1.6E-26 5.4E-31 162.7 7.5 147 16-178 2-163 (272)
126 3dpu_A RAB family protein; roc 99.9 2.6E-26 9E-31 175.8 9.1 157 14-180 38-209 (535)
127 2e87_A Hypothetical protein PH 99.9 1.5E-24 5.1E-29 158.5 17.1 158 15-179 165-336 (357)
128 3sjy_A Translation initiation 99.9 2.5E-25 8.5E-30 165.0 13.0 164 13-179 4-192 (403)
129 1nrj_B SR-beta, signal recogni 99.9 1.3E-26 4.5E-31 158.7 4.6 119 14-137 9-139 (218)
130 4dcu_A GTP-binding protein ENG 99.9 1.2E-25 4.1E-30 169.1 9.8 161 15-180 193-370 (456)
131 1cip_A Protein (guanine nucleo 99.9 8.9E-25 3.1E-29 158.5 13.6 134 47-180 179-345 (353)
132 1xzp_A Probable tRNA modificat 99.9 6.3E-25 2.1E-29 165.2 12.9 149 17-178 243-404 (482)
133 3qq5_A Small GTP-binding prote 99.9 1.3E-25 4.3E-30 166.3 8.0 153 14-178 31-195 (423)
134 1lnz_A SPO0B-associated GTP-bi 99.9 5.2E-25 1.8E-29 159.3 11.0 158 18-180 159-331 (342)
135 3ohm_A Guanine nucleotide-bind 99.9 6.1E-24 2.1E-28 152.1 14.6 135 46-180 152-319 (327)
136 1zcb_A G alpha I/13; GTP-bindi 99.9 3.8E-24 1.3E-28 155.7 13.2 132 48-179 188-353 (362)
137 1ega_A Protein (GTP-binding pr 99.9 7.9E-24 2.7E-28 151.2 14.6 156 15-178 6-174 (301)
138 2hjg_A GTP-binding protein ENG 99.9 7.2E-25 2.5E-29 164.0 9.5 150 17-179 3-165 (436)
139 1mky_A Probable GTP-binding pr 99.9 4.7E-24 1.6E-28 159.8 13.6 160 16-180 179-356 (439)
140 1mky_A Probable GTP-binding pr 99.9 1.4E-23 4.6E-28 157.3 15.9 151 18-179 2-166 (439)
141 1wb1_A Translation elongation 99.9 7.8E-25 2.7E-29 165.3 9.2 159 15-178 17-188 (482)
142 3geh_A MNME, tRNA modification 99.9 2.7E-24 9.2E-29 161.1 11.8 151 16-180 223-385 (462)
143 1s0u_A EIF-2-gamma, translatio 99.9 9.6E-24 3.3E-28 156.7 14.3 160 14-178 5-197 (408)
144 3izy_P Translation initiation 99.9 8.5E-26 2.9E-30 171.2 3.2 160 15-179 2-168 (537)
145 3tr5_A RF-3, peptide chain rel 99.9 1.4E-23 4.7E-28 159.6 15.2 114 15-133 11-149 (528)
146 3lxw_A GTPase IMAP family memb 99.9 3.3E-23 1.1E-27 144.2 15.1 163 15-180 19-209 (247)
147 1kk1_A EIF2gamma; initiation o 99.9 9.5E-24 3.2E-28 156.9 12.2 162 14-178 7-199 (410)
148 1g7s_A Translation initiation 99.9 1.1E-23 3.7E-28 161.9 12.9 156 15-178 3-217 (594)
149 2elf_A Protein translation elo 99.9 8.9E-24 3E-28 154.6 11.8 149 19-179 23-180 (370)
150 3j2k_7 ERF3, eukaryotic polype 99.9 8.9E-24 3E-28 158.0 11.5 153 15-171 15-217 (439)
151 2ged_A SR-beta, signal recogni 99.9 4E-24 1.4E-28 143.7 8.7 126 14-144 45-182 (193)
152 2qtf_A Protein HFLX, GTP-bindi 99.9 4.8E-23 1.6E-27 150.3 14.7 158 18-179 179-354 (364)
153 2xtp_A GTPase IMAP family memb 99.9 7.4E-24 2.5E-28 148.7 10.1 164 14-180 19-209 (260)
154 4fid_A G protein alpha subunit 99.9 2.7E-23 9.1E-28 149.4 12.8 134 46-179 146-328 (340)
155 1zun_B Sulfate adenylate trans 99.9 2.8E-23 9.7E-28 155.3 13.2 157 9-170 16-215 (434)
156 2ywe_A GTP-binding protein LEP 99.9 4.2E-23 1.5E-27 158.3 14.0 158 15-179 4-184 (600)
157 1jny_A EF-1-alpha, elongation 99.9 2.9E-24 9.8E-29 160.6 7.4 156 15-171 4-205 (435)
158 3cb4_D GTP-binding protein LEP 99.9 2.8E-23 9.4E-28 159.6 13.0 157 16-179 3-182 (599)
159 1zo1_I IF2, translation initia 99.9 3.6E-25 1.2E-29 166.6 2.1 156 15-176 2-164 (501)
160 3p26_A Elongation factor 1 alp 99.9 8E-24 2.7E-28 160.1 9.3 152 15-168 31-227 (483)
161 3izq_1 HBS1P, elongation facto 99.9 1.6E-23 5.5E-28 161.8 10.4 153 15-169 165-362 (611)
162 2c78_A Elongation factor TU-A; 99.9 3.9E-23 1.3E-27 153.4 11.6 159 15-178 9-211 (405)
163 2xtz_A Guanine nucleotide-bind 99.9 1.7E-23 5.9E-28 151.8 9.4 121 59-179 181-345 (354)
164 3lxx_A GTPase IMAP family memb 99.9 4.4E-23 1.5E-27 143.1 11.0 165 13-179 25-214 (239)
165 4dcu_A GTP-binding protein ENG 99.9 9E-24 3.1E-28 158.9 7.3 155 13-179 19-185 (456)
166 1d2e_A Elongation factor TU (E 99.9 4.7E-23 1.6E-27 152.5 9.4 158 16-178 2-194 (397)
167 3t5d_A Septin-7; GTP-binding p 99.9 3.1E-23 1.1E-27 146.6 7.5 158 15-178 6-203 (274)
168 1azs_C GS-alpha; complex (lyas 99.9 9.9E-23 3.4E-27 149.4 9.8 132 48-179 204-385 (402)
169 1r5b_A Eukaryotic peptide chai 99.9 6.3E-24 2.2E-28 159.9 3.5 159 11-170 37-243 (467)
170 1f60_A Elongation factor EEF1A 99.9 3E-22 1E-26 150.5 9.9 150 15-169 5-202 (458)
171 2aka_B Dynamin-1; fusion prote 99.9 1.6E-22 5.4E-27 144.6 7.8 157 15-176 24-250 (299)
172 3mca_A HBS1, elongation factor 99.9 6.8E-24 2.3E-28 163.4 0.5 151 14-167 174-371 (592)
173 2h5e_A Peptide chain release f 99.9 3.9E-21 1.3E-25 146.3 15.4 114 15-133 11-149 (529)
174 1dar_A EF-G, elongation factor 99.9 5.4E-21 1.9E-25 149.8 14.7 114 15-133 10-144 (691)
175 3avx_A Elongation factor TS, e 99.9 1.6E-21 5.4E-26 156.9 10.6 159 15-178 294-485 (1289)
176 1pui_A ENGB, probable GTP-bind 99.9 3.9E-21 1.3E-25 130.7 9.7 162 12-179 21-199 (210)
177 2xex_A Elongation factor G; GT 99.8 2.7E-20 9.3E-25 145.9 14.5 115 14-133 7-142 (693)
178 3def_A T7I23.11 protein; chlor 99.8 2.3E-20 7.7E-25 131.1 12.5 117 15-132 34-165 (262)
179 2dy1_A Elongation factor G; tr 99.8 2E-20 6.7E-25 146.2 13.2 112 15-131 7-139 (665)
180 2j69_A Bacterial dynamin-like 99.8 1.3E-20 4.3E-25 147.8 11.6 161 15-179 67-325 (695)
181 2qag_A Septin-2, protein NEDD5 99.8 3.2E-21 1.1E-25 140.8 6.6 159 14-179 34-233 (361)
182 2rdo_7 EF-G, elongation factor 99.8 1E-19 3.4E-24 142.9 15.3 114 15-133 8-149 (704)
183 1jwy_B Dynamin A GTPase domain 99.8 2E-20 6.8E-25 134.7 10.0 160 15-179 22-262 (315)
184 1udx_A The GTP-binding protein 99.8 1.8E-19 6E-24 133.2 14.9 157 18-180 158-326 (416)
185 3vqt_A RF-3, peptide chain rel 99.8 2.1E-19 7.2E-24 137.4 13.8 114 15-133 29-167 (548)
186 1h65_A Chloroplast outer envel 99.8 9.1E-19 3.1E-23 123.4 14.0 118 15-133 37-169 (270)
187 3t34_A Dynamin-related protein 99.8 9.9E-20 3.4E-24 133.3 8.4 151 16-173 33-255 (360)
188 3p32_A Probable GTPase RV1496/ 99.8 3.7E-19 1.3E-23 129.9 8.5 153 15-179 77-284 (355)
189 2x2e_A Dynamin-1; nitration, h 99.8 8E-20 2.7E-24 133.3 3.8 155 15-175 29-254 (353)
190 1wxq_A GTP-binding protein; st 99.8 2.9E-19 9.8E-24 131.8 6.6 80 18-97 1-114 (397)
191 3j25_A Tetracycline resistance 99.8 4E-19 1.4E-23 138.3 5.1 158 16-178 1-238 (638)
192 2www_A Methylmalonic aciduria 99.7 5.8E-18 2E-22 123.1 9.5 151 16-178 73-278 (349)
193 1u0l_A Probable GTPase ENGC; p 99.7 1.1E-18 3.9E-23 124.6 5.1 133 32-174 32-168 (301)
194 2wsm_A Hydrogenase expression/ 99.7 2.5E-18 8.5E-23 117.7 6.3 151 15-180 28-215 (221)
195 2qnr_A Septin-2, protein NEDD5 99.7 2.2E-18 7.7E-23 123.0 5.4 160 14-180 15-215 (301)
196 1yrb_A ATP(GTP)binding protein 99.7 1.7E-17 6E-22 116.3 9.6 165 14-179 11-257 (262)
197 1n0u_A EF-2, elongation factor 99.7 1.2E-17 4.3E-22 133.3 9.7 112 15-131 17-163 (842)
198 2qpt_A EH domain-containing pr 99.7 4.5E-18 1.5E-22 130.2 6.5 115 15-133 63-233 (550)
199 2qag_C Septin-7; cell cycle, c 99.7 1.2E-17 4E-22 123.6 7.5 156 15-177 29-225 (418)
200 4fn5_A EF-G 1, elongation fact 99.7 1.4E-16 4.8E-21 125.5 13.5 114 15-133 11-152 (709)
201 3zvr_A Dynamin-1; hydrolase, D 99.7 7.8E-17 2.7E-21 126.3 11.7 156 15-175 49-274 (772)
202 2p67_A LAO/AO transport system 99.7 2.8E-18 9.5E-23 124.6 2.5 153 14-178 53-260 (341)
203 1jal_A YCHF protein; nucleotid 99.7 2.7E-15 9.3E-20 108.8 15.4 79 18-96 3-108 (363)
204 4a9a_A Ribosome-interacting GT 99.7 4E-16 1.4E-20 113.7 10.6 112 17-130 72-194 (376)
205 2hf9_A Probable hydrogenase ni 99.7 3.5E-16 1.2E-20 107.3 9.3 151 15-180 36-225 (226)
206 3l82_B F-box only protein 4; T 99.7 1.6E-16 5.6E-21 105.6 7.2 175 5-181 4-225 (227)
207 2qm8_A GTPase/ATPase; G protei 99.6 1.1E-15 3.6E-20 110.7 7.1 152 15-178 53-260 (337)
208 3l2o_B F-box only protein 4; s 99.6 3.6E-15 1.2E-19 103.8 7.5 112 68-181 194-310 (312)
209 2dby_A GTP-binding protein; GD 99.6 1.4E-14 4.9E-19 105.6 10.7 79 18-96 2-111 (368)
210 2ohf_A Protein OLA1, GTP-bindi 99.4 5.1E-13 1.8E-17 97.9 6.2 84 15-98 20-130 (396)
211 2yv5_A YJEQ protein; hydrolase 99.4 2.4E-12 8.1E-17 91.9 8.9 98 71-174 66-164 (302)
212 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 1E-11 3.5E-16 91.2 12.2 82 15-96 18-127 (392)
213 3ec1_A YQEH GTPase; atnos1, at 99.2 1E-12 3.5E-17 96.2 0.6 111 17-133 162-289 (369)
214 2j37_W Signal recognition part 99.2 2.9E-11 1E-15 91.4 7.8 154 15-176 99-310 (504)
215 2qag_B Septin-6, protein NEDD5 99.1 2.3E-10 8E-15 84.6 9.5 142 12-160 37-217 (427)
216 3h2y_A GTPase family protein; 99.1 3.7E-11 1.3E-15 88.0 3.6 122 17-143 160-298 (368)
217 3h2y_A GTPase family protein; 99.1 6.1E-11 2.1E-15 86.8 4.0 101 70-178 55-159 (368)
218 1tq4_A IIGP1, interferon-induc 99.1 1.2E-09 4E-14 80.9 10.5 158 15-179 67-253 (413)
219 3sop_A Neuronal-specific septi 99.0 7.8E-10 2.7E-14 77.6 8.0 109 17-133 2-155 (270)
220 3ec1_A YQEH GTPase; atnos1, at 99.0 1.2E-10 4.1E-15 85.3 3.7 102 70-179 57-162 (369)
221 1puj_A YLQF, conserved hypothe 99.0 4.1E-10 1.4E-14 79.6 4.6 102 65-178 3-105 (282)
222 1puj_A YLQF, conserved hypothe 98.9 1.6E-09 5.4E-14 76.6 5.0 59 14-73 117-177 (282)
223 3cnl_A YLQF, putative uncharac 98.9 7.1E-10 2.4E-14 77.5 2.3 57 18-74 100-157 (262)
224 3dm5_A SRP54, signal recogniti 98.6 3.6E-08 1.2E-12 73.4 5.4 110 16-132 99-253 (443)
225 1f5n_A Interferon-induced guan 98.6 6E-08 2.1E-12 74.7 6.6 60 14-73 35-103 (592)
226 3szr_A Interferon-induced GTP- 98.6 5E-08 1.7E-12 75.9 5.2 24 18-41 46-69 (608)
227 2v3c_C SRP54, signal recogniti 98.5 1.1E-07 3.8E-12 70.9 5.9 108 17-132 99-252 (432)
228 3cnl_A YLQF, putative uncharac 98.5 1.9E-08 6.6E-13 70.3 1.5 93 68-175 4-97 (262)
229 1t9h_A YLOQ, probable GTPase E 98.3 2.8E-07 9.6E-12 65.7 3.5 87 78-172 80-170 (307)
230 3kl4_A SRP54, signal recogniti 98.2 7.9E-06 2.7E-10 60.9 9.5 110 16-132 96-252 (433)
231 2rcn_A Probable GTPase ENGC; Y 98.2 5.7E-06 2E-10 60.1 7.2 86 81-173 127-213 (358)
232 1j8m_F SRP54, signal recogniti 98.1 2.3E-06 8E-11 60.8 4.0 108 17-132 98-253 (297)
233 2xxa_A Signal recognition part 98.0 2.3E-05 7.9E-10 58.5 8.5 110 16-133 99-255 (433)
234 1bif_A 6-phosphofructo-2-kinas 98.0 3.5E-07 1.2E-11 69.1 -1.3 86 13-98 35-134 (469)
235 3q5d_A Atlastin-1; G protein, 97.9 1.9E-05 6.4E-10 59.1 6.2 27 13-39 63-89 (447)
236 1ye8_A Protein THEP1, hypothet 97.8 1.1E-05 3.7E-10 53.0 3.2 23 18-40 1-23 (178)
237 1kgd_A CASK, peripheral plasma 97.7 1.7E-05 5.7E-10 52.1 2.9 23 18-40 6-28 (180)
238 3ec2_A DNA replication protein 97.7 2.1E-05 7.1E-10 51.6 3.1 32 8-39 29-60 (180)
239 2bbw_A Adenylate kinase 4, AK4 97.7 2.4E-05 8.3E-10 54.0 3.5 25 14-38 24-48 (246)
240 1lvg_A Guanylate kinase, GMP k 97.7 2E-05 6.9E-10 52.6 2.9 22 18-39 5-26 (198)
241 3ney_A 55 kDa erythrocyte memb 97.7 3.4E-05 1.2E-09 51.4 3.5 30 11-40 13-42 (197)
242 3end_A Light-independent proto 97.6 0.0015 5.3E-08 46.4 12.0 69 60-130 156-225 (307)
243 3a00_A Guanylate kinase, GMP k 97.6 2.9E-05 1E-09 51.2 2.8 22 19-40 3-24 (186)
244 3tr0_A Guanylate kinase, GMP k 97.6 3E-05 1E-09 51.8 2.9 23 18-40 8-30 (205)
245 3c8u_A Fructokinase; YP_612366 97.6 3.9E-05 1.3E-09 51.6 3.3 26 14-39 19-44 (208)
246 1znw_A Guanylate kinase, GMP k 97.6 3.4E-05 1.2E-09 51.8 2.9 25 16-40 19-43 (207)
247 4gp7_A Metallophosphoesterase; 97.6 3.6E-05 1.2E-09 50.1 2.7 21 18-38 10-30 (171)
248 4dzz_A Plasmid partitioning pr 97.6 0.00061 2.1E-08 45.3 8.9 68 60-131 75-143 (206)
249 1z6g_A Guanylate kinase; struc 97.6 3.8E-05 1.3E-09 52.1 2.9 25 16-40 22-46 (218)
250 1zp6_A Hypothetical protein AT 97.6 5.1E-05 1.7E-09 50.1 3.4 24 17-40 9-32 (191)
251 1s96_A Guanylate kinase, GMP k 97.6 4E-05 1.4E-09 52.0 2.9 25 16-40 15-39 (219)
252 3tau_A Guanylate kinase, GMP k 97.6 5.4E-05 1.9E-09 50.9 3.5 27 15-41 6-32 (208)
253 3tif_A Uncharacterized ABC tra 97.5 5.1E-05 1.7E-09 52.1 3.0 26 16-41 30-55 (235)
254 1ex7_A Guanylate kinase; subst 97.5 5.8E-05 2E-09 49.9 3.1 21 20-40 4-24 (186)
255 3lw7_A Adenylate kinase relate 97.5 6.7E-05 2.3E-09 48.6 3.2 20 18-37 2-21 (179)
256 1jbk_A CLPB protein; beta barr 97.5 0.00013 4.6E-09 47.7 4.5 34 6-39 32-65 (195)
257 2yvu_A Probable adenylyl-sulfa 97.5 9.5E-05 3.2E-09 48.7 3.7 27 13-39 9-35 (186)
258 1htw_A HI0065; nucleotide-bind 97.5 6.7E-05 2.3E-09 48.2 2.9 27 15-41 31-57 (158)
259 2j41_A Guanylate kinase; GMP, 97.5 8E-05 2.7E-09 49.7 3.3 25 17-41 6-30 (207)
260 2ffh_A Protein (FFH); SRP54, s 97.5 6E-05 2.1E-09 56.1 2.9 66 59-131 179-250 (425)
261 1kag_A SKI, shikimate kinase I 97.5 6.6E-05 2.2E-09 48.7 2.8 23 18-40 5-27 (173)
262 3asz_A Uridine kinase; cytidin 97.5 7.2E-05 2.4E-09 50.3 3.0 24 16-39 5-28 (211)
263 2pcj_A ABC transporter, lipopr 97.5 6.6E-05 2.3E-09 51.1 2.8 24 18-41 31-54 (224)
264 1y63_A LMAJ004144AAA protein; 97.5 0.0001 3.5E-09 48.5 3.7 26 15-40 8-33 (184)
265 2cdn_A Adenylate kinase; phosp 97.4 0.00011 3.8E-09 49.0 3.7 27 13-39 16-42 (201)
266 2onk_A Molybdate/tungstate ABC 97.4 8.2E-05 2.8E-09 51.2 3.2 24 18-41 25-48 (240)
267 2qor_A Guanylate kinase; phosp 97.4 8.2E-05 2.8E-09 49.8 3.1 25 16-40 11-35 (204)
268 3gfo_A Cobalt import ATP-bindi 97.4 8.2E-05 2.8E-09 52.2 3.0 24 18-41 35-58 (275)
269 2rcn_A Probable GTPase ENGC; Y 97.4 9.3E-05 3.2E-09 53.8 3.4 25 18-42 216-240 (358)
270 2bdt_A BH3686; alpha-beta prot 97.4 8.3E-05 2.8E-09 49.1 2.9 21 19-39 4-24 (189)
271 3tqc_A Pantothenate kinase; bi 97.4 0.00013 4.6E-09 52.3 4.1 25 14-38 89-113 (321)
272 3kb2_A SPBC2 prophage-derived 97.4 0.0001 3.4E-09 47.7 3.2 21 19-39 3-23 (173)
273 1sgw_A Putative ABC transporte 97.4 9.1E-05 3.1E-09 50.1 3.0 24 18-41 36-59 (214)
274 1b0u_A Histidine permease; ABC 97.4 8.7E-05 3E-09 51.8 3.0 26 16-41 31-56 (262)
275 1ly1_A Polynucleotide kinase; 97.4 0.00011 3.7E-09 47.9 3.3 22 18-39 3-24 (181)
276 2cbz_A Multidrug resistance-as 97.4 9.8E-05 3.3E-09 50.7 3.2 26 16-41 30-55 (237)
277 4g1u_C Hemin import ATP-bindin 97.4 9.1E-05 3.1E-09 51.8 3.0 24 17-40 37-60 (266)
278 2eyu_A Twitching motility prot 97.4 9.8E-05 3.4E-09 51.5 3.1 25 15-39 23-47 (261)
279 4eun_A Thermoresistant glucoki 97.4 0.00011 3.7E-09 49.0 3.3 24 16-39 28-51 (200)
280 1g6h_A High-affinity branched- 97.4 9.5E-05 3.3E-09 51.4 3.0 24 18-41 34-57 (257)
281 1kht_A Adenylate kinase; phosp 97.4 0.00012 4.1E-09 48.2 3.4 23 17-39 3-25 (192)
282 2ff7_A Alpha-hemolysin translo 97.4 0.00011 3.7E-09 50.8 3.2 23 18-40 36-58 (247)
283 1mv5_A LMRA, multidrug resista 97.4 0.00011 3.8E-09 50.6 3.3 25 16-40 27-51 (243)
284 3fb4_A Adenylate kinase; psych 97.4 0.00011 3.8E-09 49.5 3.2 21 18-38 1-21 (216)
285 3t61_A Gluconokinase; PSI-biol 97.4 0.00011 3.7E-09 49.1 3.1 24 16-39 17-40 (202)
286 3dl0_A Adenylate kinase; phosp 97.4 0.00012 4.1E-09 49.4 3.3 22 18-39 1-22 (216)
287 2i3b_A HCR-ntpase, human cance 97.4 9.8E-05 3.4E-09 48.9 2.8 21 19-39 3-23 (189)
288 2pze_A Cystic fibrosis transme 97.4 0.00012 4.1E-09 50.0 3.3 24 18-41 35-58 (229)
289 1knq_A Gluconate kinase; ALFA/ 97.4 0.00014 4.7E-09 47.3 3.5 24 16-39 7-30 (175)
290 2olj_A Amino acid ABC transpor 97.4 0.00011 3.7E-09 51.3 3.0 25 16-40 49-73 (263)
291 3uie_A Adenylyl-sulfate kinase 97.4 0.00013 4.6E-09 48.6 3.4 27 13-39 21-47 (200)
292 1cke_A CK, MSSA, protein (cyti 97.3 0.00014 4.7E-09 49.4 3.4 23 17-39 5-27 (227)
293 1vpl_A ABC transporter, ATP-bi 97.3 0.00012 4E-09 50.9 3.0 26 16-41 40-65 (256)
294 1ji0_A ABC transporter; ATP bi 97.3 0.00011 3.9E-09 50.5 3.0 24 18-41 33-56 (240)
295 3b85_A Phosphate starvation-in 97.3 0.0001 3.5E-09 49.6 2.6 23 18-40 23-45 (208)
296 2ghi_A Transport protein; mult 97.3 0.00013 4.4E-09 50.8 3.2 25 16-40 45-69 (260)
297 2d2e_A SUFC protein; ABC-ATPas 97.3 0.00013 4.3E-09 50.6 3.1 23 18-40 30-52 (250)
298 2qi9_C Vitamin B12 import ATP- 97.3 0.00012 4.2E-09 50.6 3.0 24 18-41 27-50 (249)
299 1tev_A UMP-CMP kinase; ploop, 97.3 0.00015 5.1E-09 47.9 3.3 24 16-39 2-25 (196)
300 2v9p_A Replication protein E1; 97.3 0.00012 4.2E-09 52.1 3.0 25 15-39 124-148 (305)
301 2if2_A Dephospho-COA kinase; a 97.3 0.00013 4.3E-09 48.7 3.0 22 18-39 2-23 (204)
302 3cm0_A Adenylate kinase; ATP-b 97.3 0.00016 5.3E-09 47.5 3.4 23 17-39 4-26 (186)
303 2zu0_C Probable ATP-dependent 97.3 0.00013 4.5E-09 51.0 3.2 25 16-40 45-69 (267)
304 3sr0_A Adenylate kinase; phosp 97.3 0.00015 5.2E-09 48.7 3.3 22 18-39 1-22 (206)
305 2rhm_A Putative kinase; P-loop 97.3 0.00016 5.3E-09 47.8 3.3 24 16-39 4-27 (193)
306 1np6_A Molybdopterin-guanine d 97.3 0.00014 4.6E-09 47.6 2.9 24 17-40 6-29 (174)
307 2ihy_A ABC transporter, ATP-bi 97.3 0.00015 5E-09 51.1 3.3 25 17-41 47-71 (279)
308 2p65_A Hypothetical protein PF 97.3 0.00019 6.3E-09 46.9 3.6 32 8-39 34-65 (187)
309 2jaq_A Deoxyguanosine kinase; 97.3 0.00016 5.5E-09 48.1 3.3 21 19-39 2-22 (205)
310 2ixe_A Antigen peptide transpo 97.3 0.00015 5E-09 50.9 3.2 25 16-40 44-68 (271)
311 1jjv_A Dephospho-COA kinase; P 97.3 0.00016 5.6E-09 48.3 3.3 22 18-39 3-24 (206)
312 3aez_A Pantothenate kinase; tr 97.3 0.00015 5.3E-09 51.8 3.4 26 14-39 87-112 (312)
313 3vaa_A Shikimate kinase, SK; s 97.3 0.00017 6E-09 48.0 3.4 24 16-39 24-47 (199)
314 3trf_A Shikimate kinase, SK; a 97.3 0.00017 5.8E-09 47.3 3.3 23 17-39 5-27 (185)
315 1qhx_A CPT, protein (chloramph 97.3 0.0002 6.7E-09 46.7 3.6 22 18-39 4-25 (178)
316 2nq2_C Hypothetical ABC transp 97.3 0.00014 4.9E-09 50.4 3.0 24 18-41 32-55 (253)
317 2plr_A DTMP kinase, probable t 97.3 0.00019 6.4E-09 48.1 3.5 24 16-39 3-26 (213)
318 3tlx_A Adenylate kinase 2; str 97.3 0.00019 6.4E-09 49.5 3.6 25 15-39 27-51 (243)
319 2jeo_A Uridine-cytidine kinase 97.3 0.00017 5.7E-09 49.7 3.3 25 15-39 23-47 (245)
320 2yz2_A Putative ABC transporte 97.3 0.00014 4.9E-09 50.8 3.0 26 16-41 32-57 (266)
321 2ehv_A Hypothetical protein PH 97.3 0.00016 5.4E-09 49.7 3.1 23 16-38 29-51 (251)
322 1rz3_A Hypothetical protein rb 97.3 0.00028 9.6E-09 47.1 4.2 25 15-39 20-44 (201)
323 2qt1_A Nicotinamide riboside k 97.3 0.00019 6.6E-09 48.0 3.4 26 15-40 19-44 (207)
324 1u0l_A Probable GTPase ENGC; p 97.3 0.00018 6.3E-09 51.2 3.4 25 18-42 170-194 (301)
325 3lnc_A Guanylate kinase, GMP k 97.3 9.2E-05 3.1E-09 50.5 1.8 24 17-40 27-51 (231)
326 1nks_A Adenylate kinase; therm 97.3 0.00018 6E-09 47.4 3.1 21 19-39 3-23 (194)
327 1aky_A Adenylate kinase; ATP:A 97.3 0.0002 6.9E-09 48.4 3.5 24 16-39 3-26 (220)
328 3jvv_A Twitching mobility prot 97.3 0.00016 5.3E-09 52.7 3.0 25 15-39 121-145 (356)
329 4a74_A DNA repair and recombin 97.3 0.00014 4.9E-09 49.3 2.7 23 17-39 25-47 (231)
330 1t9h_A YLOQ, probable GTPase E 97.3 4.8E-05 1.6E-09 54.2 0.3 25 17-41 173-197 (307)
331 2pjz_A Hypothetical protein ST 97.2 0.00019 6.6E-09 50.0 3.3 24 18-41 31-54 (263)
332 1uf9_A TT1252 protein; P-loop, 97.2 0.00021 7.1E-09 47.5 3.3 26 15-40 6-31 (203)
333 2v54_A DTMP kinase, thymidylat 97.2 0.00024 8.3E-09 47.3 3.6 25 16-40 3-27 (204)
334 1e4v_A Adenylate kinase; trans 97.2 0.0002 6.8E-09 48.3 3.1 22 18-39 1-22 (214)
335 2f1r_A Molybdopterin-guanine d 97.2 7.8E-05 2.7E-09 48.6 1.1 21 19-39 4-24 (171)
336 2yv5_A YJEQ protein; hydrolase 97.2 0.00018 6.3E-09 51.2 3.0 21 18-38 166-186 (302)
337 2c95_A Adenylate kinase 1; tra 97.2 0.00023 7.9E-09 47.0 3.4 24 16-39 8-31 (196)
338 1odf_A YGR205W, hypothetical 3 97.2 0.00024 8.2E-09 50.3 3.5 25 14-38 28-52 (290)
339 3iij_A Coilin-interacting nucl 97.2 0.00023 7.8E-09 46.5 3.2 24 15-38 9-32 (180)
340 1sq5_A Pantothenate kinase; P- 97.2 0.00027 9.1E-09 50.5 3.7 25 15-39 78-102 (308)
341 3fvq_A Fe(3+) IONS import ATP- 97.2 0.00019 6.5E-09 52.2 2.9 24 18-41 31-54 (359)
342 1zd8_A GTP:AMP phosphotransfer 97.2 0.00023 7.8E-09 48.4 3.2 23 16-38 6-28 (227)
343 3nh6_A ATP-binding cassette SU 97.2 0.00013 4.6E-09 51.9 2.1 25 16-40 79-103 (306)
344 4e22_A Cytidylate kinase; P-lo 97.2 0.0003 1E-08 48.7 3.7 24 15-38 25-48 (252)
345 2kjq_A DNAA-related protein; s 97.2 0.00018 6E-09 45.8 2.3 24 16-39 35-58 (149)
346 1gvn_B Zeta; postsegregational 97.2 0.00027 9.2E-09 50.0 3.4 25 15-39 31-55 (287)
347 1lw7_A Transcriptional regulat 97.2 0.00019 6.3E-09 52.5 2.7 24 17-40 170-193 (365)
348 2pt5_A Shikimate kinase, SK; a 97.2 0.00029 9.9E-09 45.4 3.3 22 18-39 1-22 (168)
349 3tui_C Methionine import ATP-b 97.2 0.00024 8.2E-09 51.8 3.2 26 16-41 53-78 (366)
350 1nn5_A Similar to deoxythymidy 97.2 0.00028 9.5E-09 47.4 3.3 24 16-39 8-31 (215)
351 2vli_A Antibiotic resistance p 97.2 0.00018 6.3E-09 47.0 2.4 24 16-39 4-27 (183)
352 1ukz_A Uridylate kinase; trans 97.2 0.00032 1.1E-08 46.7 3.6 25 15-39 13-37 (203)
353 2x8a_A Nuclear valosin-contain 97.2 0.00022 7.5E-09 50.1 2.9 21 20-40 47-67 (274)
354 1z47_A CYSA, putative ABC-tran 97.2 0.00024 8.3E-09 51.6 3.1 24 18-41 42-65 (355)
355 2bwj_A Adenylate kinase 5; pho 97.2 0.00026 8.8E-09 46.9 3.0 23 17-39 12-34 (199)
356 2bbs_A Cystic fibrosis transme 97.1 0.00025 8.4E-09 50.2 3.0 24 17-40 64-87 (290)
357 3rlf_A Maltose/maltodextrin im 97.1 0.00025 8.6E-09 52.0 3.2 24 18-41 30-53 (381)
358 1via_A Shikimate kinase; struc 97.1 0.00026 8.9E-09 46.1 2.9 21 19-39 6-26 (175)
359 2gza_A Type IV secretion syste 97.1 0.00021 7.2E-09 52.2 2.7 26 15-40 173-198 (361)
360 2wwf_A Thymidilate kinase, put 97.1 0.00029 9.9E-09 47.2 3.3 24 16-39 9-32 (212)
361 3be4_A Adenylate kinase; malar 97.1 0.00028 9.4E-09 47.7 3.1 24 16-39 4-27 (217)
362 1zak_A Adenylate kinase; ATP:A 97.1 0.00026 8.8E-09 48.0 3.0 24 16-39 4-27 (222)
363 2pt7_A CAG-ALFA; ATPase, prote 97.1 0.00021 7.2E-09 51.5 2.7 25 16-40 170-194 (330)
364 1p9r_A General secretion pathw 97.1 0.00036 1.2E-08 51.9 4.0 25 15-39 165-189 (418)
365 1xjc_A MOBB protein homolog; s 97.1 0.00034 1.2E-08 45.4 3.4 23 17-39 4-26 (169)
366 2yyz_A Sugar ABC transporter, 97.1 0.00026 8.9E-09 51.6 3.1 25 17-41 29-53 (359)
367 2it1_A 362AA long hypothetical 97.1 0.00027 9.2E-09 51.5 3.2 25 17-41 29-53 (362)
368 1ak2_A Adenylate kinase isoenz 97.1 0.00036 1.2E-08 47.7 3.6 25 15-39 14-38 (233)
369 2xb4_A Adenylate kinase; ATP-b 97.1 0.00032 1.1E-08 47.6 3.3 22 18-39 1-22 (223)
370 3bos_A Putative DNA replicatio 97.1 0.00045 1.5E-08 47.0 4.0 24 16-39 51-74 (242)
371 1ixz_A ATP-dependent metallopr 97.1 0.00028 9.6E-09 48.8 2.9 22 19-40 51-72 (254)
372 1g29_1 MALK, maltose transport 97.1 0.00029 1E-08 51.6 3.1 24 18-41 30-53 (372)
373 2ewv_A Twitching motility prot 97.1 0.00037 1.3E-08 51.1 3.6 25 15-39 134-158 (372)
374 1v43_A Sugar-binding transport 97.1 0.0003 1E-08 51.5 3.2 26 16-41 36-61 (372)
375 1rj9_A FTSY, signal recognitio 97.1 0.00028 9.6E-09 50.3 2.9 23 16-38 101-123 (304)
376 2oap_1 GSPE-2, type II secreti 97.1 0.00026 9.1E-09 54.0 2.8 24 17-40 260-283 (511)
377 2pbr_A DTMP kinase, thymidylat 97.1 0.00038 1.3E-08 45.9 3.3 21 19-39 2-22 (195)
378 1vht_A Dephospho-COA kinase; s 97.1 0.0004 1.4E-08 46.9 3.4 23 17-39 4-26 (218)
379 3t15_A Ribulose bisphosphate c 97.1 0.0003 1E-08 49.8 2.9 25 15-39 34-58 (293)
380 3umf_A Adenylate kinase; rossm 97.1 0.00046 1.6E-08 46.7 3.6 22 18-39 30-51 (217)
381 2ze6_A Isopentenyl transferase 97.1 0.00036 1.2E-08 48.3 3.1 21 19-39 3-23 (253)
382 3r20_A Cytidylate kinase; stru 97.0 0.00043 1.5E-08 47.3 3.4 24 15-38 7-30 (233)
383 2pez_A Bifunctional 3'-phospho 97.0 0.00043 1.5E-08 45.2 3.3 24 16-39 4-27 (179)
384 2z0h_A DTMP kinase, thymidylat 97.0 0.00044 1.5E-08 45.7 3.3 21 19-39 2-22 (197)
385 3b9q_A Chloroplast SRP recepto 97.0 0.00036 1.2E-08 49.7 2.9 24 16-39 99-122 (302)
386 3cwq_A Para family chromosome 97.0 0.0081 2.8E-07 40.2 9.5 68 59-132 66-134 (209)
387 1d2n_A N-ethylmaleimide-sensit 97.0 0.0006 2E-08 47.6 4.0 27 14-40 61-87 (272)
388 3d31_A Sulfate/molybdate ABC t 97.0 0.00024 8.3E-09 51.5 2.0 24 18-41 27-50 (348)
389 3gd7_A Fusion complex of cysti 97.0 0.00037 1.3E-08 51.3 2.9 25 16-40 46-70 (390)
390 2w58_A DNAI, primosome compone 97.0 0.00069 2.4E-08 45.1 4.0 22 18-39 55-76 (202)
391 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.00051 1.8E-08 47.8 3.4 22 18-39 5-26 (260)
392 2f6r_A COA synthase, bifunctio 97.0 0.00049 1.7E-08 48.5 3.4 24 15-38 73-96 (281)
393 1in4_A RUVB, holliday junction 97.0 0.0004 1.4E-08 50.2 2.9 23 18-40 52-74 (334)
394 2iyv_A Shikimate kinase, SK; t 97.0 0.00043 1.5E-08 45.3 2.8 21 19-39 4-24 (184)
395 1uj2_A Uridine-cytidine kinase 97.0 0.00053 1.8E-08 47.4 3.4 25 15-39 20-44 (252)
396 1iy2_A ATP-dependent metallopr 97.0 0.00042 1.4E-08 48.6 2.9 22 19-40 75-96 (278)
397 1e6c_A Shikimate kinase; phosp 97.0 0.00048 1.6E-08 44.5 3.0 21 19-39 4-24 (173)
398 1qf9_A UMP/CMP kinase, protein 97.0 0.00057 2E-08 44.9 3.4 22 18-39 7-28 (194)
399 2p5t_B PEZT; postsegregational 97.0 0.00034 1.2E-08 48.4 2.4 25 15-39 30-54 (253)
400 3e70_C DPA, signal recognition 97.0 0.00055 1.9E-08 49.3 3.5 25 15-39 127-151 (328)
401 1zuh_A Shikimate kinase; alpha 97.0 0.00057 1.9E-08 44.1 3.3 22 18-39 8-29 (168)
402 2chg_A Replication factor C sm 97.0 0.00059 2E-08 45.7 3.5 22 18-39 39-60 (226)
403 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.00048 1.7E-08 46.7 3.0 22 17-38 23-44 (235)
404 3h4m_A Proteasome-activating n 97.0 0.00077 2.6E-08 47.3 4.1 26 15-40 49-74 (285)
405 1tue_A Replication protein E1; 97.0 0.00055 1.9E-08 45.8 3.1 23 17-39 58-80 (212)
406 3kta_A Chromosome segregation 97.0 0.00049 1.7E-08 45.0 2.9 20 19-38 28-47 (182)
407 1gtv_A TMK, thymidylate kinase 97.0 0.00017 5.7E-09 48.5 0.7 21 19-39 2-22 (214)
408 2vp4_A Deoxynucleoside kinase; 96.9 0.00053 1.8E-08 46.7 3.0 26 15-40 18-43 (230)
409 1lv7_A FTSH; alpha/beta domain 96.9 0.00059 2E-08 47.2 3.2 23 17-39 45-67 (257)
410 1oxx_K GLCV, glucose, ABC tran 96.9 0.00024 8.3E-09 51.7 1.3 26 16-41 30-55 (353)
411 3te6_A Regulatory protein SIR3 96.9 0.00038 1.3E-08 49.8 2.2 30 10-39 38-67 (318)
412 1cr0_A DNA primase/helicase; R 96.9 0.0005 1.7E-08 48.7 2.7 24 16-39 34-57 (296)
413 2ga8_A Hypothetical 39.9 kDa p 96.9 0.00097 3.3E-08 48.4 4.1 27 13-39 20-46 (359)
414 2npi_A Protein CLP1; CLP1-PCF1 96.9 0.00047 1.6E-08 51.9 2.6 26 15-40 136-161 (460)
415 1m7g_A Adenylylsulfate kinase; 96.9 0.0008 2.7E-08 45.2 3.3 25 15-39 23-47 (211)
416 2cvh_A DNA repair and recombin 96.8 0.00065 2.2E-08 45.7 2.9 24 16-39 19-42 (220)
417 3pxg_A Negative regulator of g 96.8 0.001 3.5E-08 50.3 4.1 34 6-39 190-223 (468)
418 3n70_A Transport activator; si 96.8 0.00083 2.8E-08 42.3 3.1 26 15-40 22-47 (145)
419 3nwj_A ATSK2; P loop, shikimat 96.8 0.00065 2.2E-08 47.0 2.7 23 17-39 48-70 (250)
420 4eaq_A DTMP kinase, thymidylat 96.8 0.00089 3E-08 45.7 3.4 24 16-39 25-48 (229)
421 2obl_A ESCN; ATPase, hydrolase 96.8 0.0007 2.4E-08 49.2 3.0 27 15-41 69-95 (347)
422 1n0w_A DNA repair protein RAD5 96.8 0.00072 2.5E-08 46.2 2.9 24 16-39 23-46 (243)
423 2grj_A Dephospho-COA kinase; T 96.8 0.00089 3E-08 44.4 3.2 25 15-39 10-34 (192)
424 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00081 2.8E-08 42.7 2.9 20 19-38 25-44 (149)
425 1sxj_C Activator 1 40 kDa subu 96.8 0.00091 3.1E-08 48.3 3.4 23 18-40 47-69 (340)
426 2og2_A Putative signal recogni 96.8 0.00096 3.3E-08 48.6 3.5 24 16-39 156-179 (359)
427 1nij_A Hypothetical protein YJ 96.8 0.00067 2.3E-08 48.6 2.7 24 17-40 4-27 (318)
428 3cf0_A Transitional endoplasmi 96.8 0.0012 4.3E-08 46.8 4.0 26 15-40 47-72 (301)
429 2yhs_A FTSY, cell division pro 96.8 0.00098 3.4E-08 50.5 3.5 23 16-38 292-314 (503)
430 1sxj_D Activator 1 41 kDa subu 96.7 0.0014 4.8E-08 47.4 4.1 23 18-40 59-81 (353)
431 1sxj_E Activator 1 40 kDa subu 96.7 0.00098 3.3E-08 48.3 3.3 22 18-39 37-58 (354)
432 4b4t_M 26S protease regulatory 96.7 0.0014 4.9E-08 48.9 4.1 26 15-40 213-238 (434)
433 1a7j_A Phosphoribulokinase; tr 96.7 0.00058 2E-08 48.3 1.9 25 15-39 3-27 (290)
434 2qgz_A Helicase loader, putati 96.7 0.0017 5.9E-08 46.3 4.3 24 16-39 151-174 (308)
435 1ltq_A Polynucleotide kinase; 96.7 0.0011 3.8E-08 46.9 3.3 22 18-39 3-24 (301)
436 1yqt_A RNAse L inhibitor; ATP- 96.7 0.0011 3.7E-08 51.0 3.4 25 16-40 46-70 (538)
437 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.0013 4.5E-08 45.4 3.5 24 16-39 38-61 (262)
438 3euj_A Chromosome partition pr 96.7 0.00095 3.2E-08 50.5 2.9 22 18-39 30-51 (483)
439 1svm_A Large T antigen; AAA+ f 96.7 0.0012 4.1E-08 48.5 3.3 25 15-39 167-191 (377)
440 2dpy_A FLII, flagellum-specifi 96.7 0.001 3.6E-08 49.8 3.0 27 15-41 155-181 (438)
441 3b60_A Lipid A export ATP-bind 96.6 0.0011 3.6E-08 51.6 3.1 25 16-40 368-392 (582)
442 3b9p_A CG5977-PA, isoform A; A 96.6 0.0013 4.3E-08 46.5 3.3 25 16-40 53-77 (297)
443 4b4t_K 26S protease regulatory 96.6 0.0018 6E-08 48.3 4.1 25 15-39 204-228 (428)
444 3syl_A Protein CBBX; photosynt 96.6 0.0013 4.5E-08 46.6 3.4 24 15-38 65-88 (309)
445 1q3t_A Cytidylate kinase; nucl 96.6 0.0016 5.3E-08 44.6 3.5 25 15-39 14-38 (236)
446 4b4t_L 26S protease subunit RP 96.6 0.0018 6.3E-08 48.4 4.1 26 14-39 212-237 (437)
447 1njg_A DNA polymerase III subu 96.6 0.0012 4.2E-08 44.7 3.0 21 19-39 47-67 (250)
448 3ozx_A RNAse L inhibitor; ATP 96.6 0.0011 3.8E-08 50.9 3.0 26 15-40 23-48 (538)
449 3b5x_A Lipid A export ATP-bind 96.6 0.0012 4.2E-08 51.3 3.2 25 16-40 368-392 (582)
450 3gmt_A Adenylate kinase; ssgci 96.6 0.0016 5.3E-08 44.4 3.3 24 16-39 7-30 (230)
451 2qmh_A HPR kinase/phosphorylas 96.6 0.0015 5.1E-08 43.4 3.1 26 16-41 33-58 (205)
452 1nlf_A Regulatory protein REPA 96.6 0.0011 3.9E-08 46.4 2.7 23 17-39 30-52 (279)
453 4b4t_J 26S protease regulatory 96.6 0.0017 6E-08 47.9 3.7 31 9-39 174-204 (405)
454 3exa_A TRNA delta(2)-isopenten 96.6 0.0016 5.6E-08 46.4 3.4 24 17-40 3-26 (322)
455 3j16_B RLI1P; ribosome recycli 96.6 0.0013 4.6E-08 51.2 3.2 25 16-40 102-126 (608)
456 1fnn_A CDC6P, cell division co 96.6 0.0014 4.9E-08 47.9 3.2 21 19-39 46-66 (389)
457 3qf7_A RAD50; ABC-ATPase, ATPa 96.6 0.0014 4.8E-08 47.9 3.1 22 16-38 23-44 (365)
458 4ido_A Atlastin-1; GTPase, GTP 96.6 0.0081 2.8E-07 45.0 7.1 25 14-38 64-88 (457)
459 1l8q_A Chromosomal replication 96.5 0.0013 4.4E-08 47.1 2.8 23 17-39 37-59 (324)
460 2yl4_A ATP-binding cassette SU 96.5 0.0011 3.8E-08 51.7 2.6 25 16-40 369-393 (595)
461 3qf4_B Uncharacterized ABC tra 96.5 0.0012 4.1E-08 51.5 2.7 25 16-40 380-404 (598)
462 3zvl_A Bifunctional polynucleo 96.5 0.0021 7.1E-08 47.9 3.7 26 15-40 256-281 (416)
463 2dr3_A UPF0273 protein PH0284; 96.5 0.0016 5.5E-08 44.5 2.9 22 17-38 23-44 (247)
464 3ozx_A RNAse L inhibitor; ATP 96.5 0.0015 5.3E-08 50.2 3.0 23 19-41 296-318 (538)
465 3co5_A Putative two-component 96.5 0.00089 3E-08 42.1 1.5 26 15-40 25-50 (143)
466 1p5z_B DCK, deoxycytidine kina 96.5 0.0011 3.8E-08 46.0 2.1 26 15-40 22-47 (263)
467 3bk7_A ABC transporter ATP-bin 96.5 0.0017 5.8E-08 50.7 3.3 25 16-40 116-140 (607)
468 2h92_A Cytidylate kinase; ross 96.5 0.0018 6E-08 43.6 3.0 23 17-39 3-25 (219)
469 3ake_A Cytidylate kinase; CMP 96.5 0.002 6.8E-08 42.9 3.3 21 19-39 4-24 (208)
470 3a8t_A Adenylate isopentenyltr 96.5 0.0023 8E-08 46.1 3.7 23 18-40 41-63 (339)
471 4a82_A Cystic fibrosis transme 96.5 0.001 3.4E-08 51.7 1.9 25 16-40 366-390 (578)
472 2px0_A Flagellar biosynthesis 96.5 0.0021 7.1E-08 45.6 3.3 110 16-132 104-253 (296)
473 3crm_A TRNA delta(2)-isopenten 96.4 0.0023 7.9E-08 45.9 3.5 22 18-39 6-27 (323)
474 1yqt_A RNAse L inhibitor; ATP- 96.4 0.002 6.8E-08 49.6 3.4 24 18-41 313-336 (538)
475 2qby_A CDC6 homolog 1, cell di 96.4 0.0025 8.6E-08 46.4 3.8 25 15-39 43-67 (386)
476 1c9k_A COBU, adenosylcobinamid 96.4 0.002 6.9E-08 42.1 2.9 21 20-40 2-22 (180)
477 3d3q_A TRNA delta(2)-isopenten 96.4 0.0019 6.6E-08 46.6 3.0 22 18-39 8-29 (340)
478 3pxi_A Negative regulator of g 96.4 0.0026 9E-08 51.0 4.1 35 5-39 189-223 (758)
479 4fcw_A Chaperone protein CLPB; 96.4 0.0024 8.2E-08 45.3 3.5 22 18-39 48-69 (311)
480 3qf4_A ABC transporter, ATP-bi 96.4 0.0013 4.6E-08 51.1 2.3 25 16-40 368-392 (587)
481 1r6b_X CLPA protein; AAA+, N-t 96.4 0.003 1E-07 50.6 4.4 35 5-39 195-229 (758)
482 1ofh_A ATP-dependent HSL prote 96.4 0.0021 7.3E-08 45.5 3.2 24 16-39 49-72 (310)
483 4b4t_I 26S protease regulatory 96.4 0.0032 1.1E-07 46.9 4.0 26 15-40 214-239 (437)
484 1pzn_A RAD51, DNA repair and r 96.4 0.0018 6E-08 47.1 2.7 25 16-40 130-154 (349)
485 3bk7_A ABC transporter ATP-bin 96.4 0.0022 7.6E-08 50.0 3.4 24 18-41 383-406 (607)
486 2r62_A Cell division protease 96.4 0.0011 3.9E-08 46.0 1.6 23 17-39 44-66 (268)
487 3uk6_A RUVB-like 2; hexameric 96.4 0.0033 1.1E-07 45.7 4.1 22 18-39 71-92 (368)
488 3eie_A Vacuolar protein sortin 96.4 0.0025 8.4E-08 45.7 3.3 24 16-39 50-73 (322)
489 1u0j_A DNA replication protein 96.3 0.0032 1.1E-07 43.9 3.7 23 17-39 104-126 (267)
490 1vma_A Cell division protein F 96.3 0.0029 1E-07 45.1 3.5 22 17-38 104-125 (306)
491 1xwi_A SKD1 protein; VPS4B, AA 96.3 0.0026 8.8E-08 45.7 3.3 25 16-40 44-68 (322)
492 2ocp_A DGK, deoxyguanosine kin 96.3 0.0027 9.1E-08 43.5 3.2 23 17-39 2-24 (241)
493 2v1u_A Cell division control p 96.3 0.0016 5.5E-08 47.5 2.2 25 15-39 42-66 (387)
494 3j16_B RLI1P; ribosome recycli 96.3 0.0023 7.8E-08 49.9 3.2 23 19-41 380-402 (608)
495 4b4t_H 26S protease regulatory 96.3 0.003 1E-07 47.4 3.6 25 15-39 241-265 (467)
496 3qks_A DNA double-strand break 96.3 0.0029 9.9E-08 42.3 3.1 20 19-38 25-44 (203)
497 2qby_B CDC6 homolog 3, cell di 96.3 0.0028 9.6E-08 46.3 3.2 24 16-39 44-67 (384)
498 2chq_A Replication factor C sm 96.2 0.004 1.4E-07 44.2 3.9 24 16-39 37-60 (319)
499 3pvs_A Replication-associated 96.2 0.0042 1.4E-07 46.7 4.1 23 18-40 51-73 (447)
500 1iqp_A RFCS; clamp loader, ext 96.2 0.0036 1.2E-07 44.6 3.5 23 18-40 47-69 (327)
No 1
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.8e-39 Score=215.06 Aligned_cols=179 Identities=49% Similarity=0.872 Sum_probs=154.2
Q ss_pred CccchHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhh
Q 030149 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
||..++++++ ++..+.++|+++|++|+|||||++++.++.+..+.||.+.....+.+++..+.+|||||++++...+..
T Consensus 1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 79 (187)
T 1zj6_A 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 79 (187)
T ss_dssp -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHH
T ss_pred CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 8889999988 888999999999999999999999999888878888988888888889999999999999999999999
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
+++.+|++++|+|++++++++....|+..+.......+.|+++|+||+|+.+....+++.+.+........+++++++||
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 159 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 159 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccC
Confidence 99999999999999999999999999998877654568999999999999876666777766655444556778999999
Q ss_pred cCCCChHHHHHHHHHHHhhc
Q 030149 161 IKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~~ 180 (182)
++|.|+++++++|.+.+...
T Consensus 160 ~~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 160 LTGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp TTTBTHHHHHHHHHHHHCC-
T ss_pred CCCcCHHHHHHHHHHHHHHH
Confidence 99999999999999987653
No 2
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=7.9e-39 Score=213.90 Aligned_cols=180 Identities=62% Similarity=1.095 Sum_probs=156.3
Q ss_pred CccchHHHhhhhcC-CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhh
Q 030149 1 MGIMFTRLFSSLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 79 (182)
||..+++++++++. ++.++|+++|++|+|||||++++.++.+..+.||.+.....+.+.+..+.+|||||++.+...+.
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR 80 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 88999999999988 89999999999999999999999988887788899988888888899999999999999999999
Q ss_pred hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEec
Q 030149 80 CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+++.+|++++|+|+++++++.....|+..+.......+.|+++|+||+|+.+....+++.+.+........+++++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 160 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 160 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 99999999999999999999999999998887655456899999999999987766777777776555555677899999
Q ss_pred ccCCCChHHHHHHHHHHHhhc
Q 030149 160 AIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~~~ 180 (182)
|++|+|+++++++|.+.+.++
T Consensus 161 a~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 161 AIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp GGGTBTHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhc
Confidence 999999999999999988764
No 3
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=1.2e-38 Score=214.15 Aligned_cols=180 Identities=56% Similarity=1.031 Sum_probs=157.4
Q ss_pred CccchHHHhh--hhcC-CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcch
Q 030149 1 MGIMFTRLFS--SLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 1 ~~~~~~~~~~--~~~~-~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
||.+++++++ +++. ++.++|+++|++|+|||||++++..+.+..+.||.+.....+.+.+..+.+|||||++.+...
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 82 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPY 82 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCC
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHH
Confidence 7777777777 7777 889999999999999999999999888888888999888888889999999999999999999
Q ss_pred hhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEE
Q 030149 78 WRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFK 157 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
+..+++.+|++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+..........++++++
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVK 162 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEE
Confidence 99999999999999999999999999999888877655568999999999999877666777777765555666789999
Q ss_pred ecccCCCChHHHHHHHHHHHhhc
Q 030149 158 TSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
+||++|+|++++++++.+.+.+.
T Consensus 163 ~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 163 SSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHT
T ss_pred ccCCCccCHHHHHHHHHHHHHhc
Confidence 99999999999999999988764
No 4
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=3.6e-38 Score=212.39 Aligned_cols=176 Identities=56% Similarity=1.003 Sum_probs=151.2
Q ss_pred chHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccC
Q 030149 4 MFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFP 83 (182)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 83 (182)
++..++++++..+.++|+++|++|+|||||++++.++.+..+.||.+.....+.+.+..+.+|||||++.+...+..+++
T Consensus 16 ~~~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 95 (192)
T 2b6h_A 16 PRGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQ 95 (192)
T ss_dssp -CCCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHH
T ss_pred hHHHHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhc
Confidence 45567788888999999999999999999999999988888888999888888889999999999999999999999999
Q ss_pred CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCC
Q 030149 84 NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKG 163 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (182)
.+|++++|+|+++++++.....|+..+.......+.|+++|+||+|+.+....+++.+.+........+++++++||++|
T Consensus 96 ~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g 175 (192)
T 2b6h_A 96 NTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQG 175 (192)
T ss_dssp TCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCc
Confidence 99999999999999999999999988877655568999999999999876667777777766555667788999999999
Q ss_pred CChHHHHHHHHHHHhh
Q 030149 164 EGLFEGLDWLSNTLKS 179 (182)
Q Consensus 164 ~gi~~l~~~l~~~~~~ 179 (182)
.|+++++++|.+.+.+
T Consensus 176 ~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 176 TGLYDGLDWLSHELSK 191 (192)
T ss_dssp BTHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999988764
No 5
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=1.3e-37 Score=208.56 Aligned_cols=178 Identities=48% Similarity=0.860 Sum_probs=146.5
Q ss_pred CccchHHHhhhhcC-CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhh
Q 030149 1 MGIMFTRLFSSLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 79 (182)
|| .+. .+.+++. .+.++|+++|++|+|||||++++.++....+.||.+.....+.+++..+.+|||||++.+...+.
T Consensus 3 mg-~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~ 80 (186)
T 1ksh_A 3 MG-LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR 80 (186)
T ss_dssp ----------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGG
T ss_pred cc-hhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 55 444 5566665 78999999999999999999999988865688899988888888999999999999999999999
Q ss_pred hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEec
Q 030149 80 CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+++.+|++++|+|+++++++.....|+..+.......+.|+++|+||+|+.+....+++.+.+........+++++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1ksh_A 81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS 160 (186)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEee
Confidence 99999999999999999999999999998887765557899999999999987766677776665544455678899999
Q ss_pred ccCCCChHHHHHHHHHHHhhc
Q 030149 160 AIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~~~ 180 (182)
|++|+|++++++++.+.+.+.
T Consensus 161 a~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 161 AVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999988653
No 6
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=2.6e-36 Score=199.51 Aligned_cols=166 Identities=65% Similarity=1.092 Sum_probs=148.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
.+.++|+++|++|+|||||++++.++.+..+.||.+.....+.+....+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 84 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 84 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence 56799999999999999999999999888888999988888888999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
++++++.....++..+.......+.|+++|+||+|+.+....+++.+.+........+++++++||++|.|+++++++|.
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (171)
T 1upt_A 85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 164 (171)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence 99999999999998887765557899999999999987766777777776555566778999999999999999999999
Q ss_pred HHHhhc
Q 030149 175 NTLKSI 180 (182)
Q Consensus 175 ~~~~~~ 180 (182)
+.+.+.
T Consensus 165 ~~i~~~ 170 (171)
T 1upt_A 165 ETLKSR 170 (171)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 998764
No 7
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=2.9e-37 Score=206.20 Aligned_cols=167 Identities=47% Similarity=0.850 Sum_probs=144.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
.+.++|+++|++|+|||||++++.+..+..+.||.+.....+.+++..+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS 93 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence 67899999999999999999999998877788999988888888999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
++++++.....|+..++......+.|+++|+||+|+.+....+++.+.+........+++++++||++|+|++++|++|.
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (181)
T 1fzq_A 94 ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173 (181)
T ss_dssp TCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHH
Confidence 99999999988888887665557899999999999987666666766665444455677899999999999999999999
Q ss_pred HHHhhcC
Q 030149 175 NTLKSIG 181 (182)
Q Consensus 175 ~~~~~~~ 181 (182)
+.+.+.+
T Consensus 174 ~~~~~~~ 180 (181)
T 1fzq_A 174 KNVNAKK 180 (181)
T ss_dssp HTC----
T ss_pred HHHHhcc
Confidence 8876654
No 8
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=1.1e-36 Score=200.00 Aligned_cols=163 Identities=61% Similarity=1.071 Sum_probs=143.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT 97 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
++|+++|++|+|||||++++.++.+..+.||.+.....+.+.+..+.+|||||++.+...+..+++++|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999988888888899987778888899999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 98 ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
+++.....|+..+.......+.|+++|+||+|+.+....+++...+........+++++++||++|.|+++++++|.+.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 99999999998887765567899999999999987666677777766555556678899999999999999999999987
Q ss_pred hhc
Q 030149 178 KSI 180 (182)
Q Consensus 178 ~~~ 180 (182)
.++
T Consensus 161 ~~~ 163 (164)
T 1r8s_A 161 RNQ 163 (164)
T ss_dssp ---
T ss_pred hhc
Confidence 654
No 9
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=2.2e-36 Score=203.36 Aligned_cols=173 Identities=36% Similarity=0.615 Sum_probs=139.7
Q ss_pred chHHHhhhh-cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhcc
Q 030149 4 MFTRLFSSL-FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82 (182)
Q Consensus 4 ~~~~~~~~~-~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 82 (182)
++.+.++.. ...+.++|+++|++|+|||||++++.++.+..+.||.+.....+.+++..+.+|||||++.+...+..++
T Consensus 9 ~~~~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 88 (190)
T 1m2o_B 9 WFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYF 88 (190)
T ss_dssp ---------------CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGC
T ss_pred HHHHHHHHhhccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHH
Confidence 344444543 4577899999999999999999999999888888999988888888999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccc-------ccCCccEE
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHK-------IKNRQWAI 155 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~ 155 (182)
+.+|++++|+|+++++++.....|+..+.......+.|+++|+||+|+.+....+++.+.+.... ....++++
T Consensus 89 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T 1m2o_B 89 PEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEV 168 (190)
T ss_dssp TTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred hcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEE
Confidence 99999999999999999999999998887765557899999999999987666666666554322 23356789
Q ss_pred EEecccCCCChHHHHHHHHHH
Q 030149 156 FKTSAIKGEGLFEGLDWLSNT 176 (182)
Q Consensus 156 ~~~S~~~~~gi~~l~~~l~~~ 176 (182)
+++||++|+|++++|++|.+.
T Consensus 169 ~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 169 FMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEeECCcCCCHHHHHHHHHhh
Confidence 999999999999999998764
No 10
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=7.7e-38 Score=213.60 Aligned_cols=161 Identities=19% Similarity=0.297 Sum_probs=122.8
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE--EEE--cCeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
.+.+.+||+|+|++|+|||||++++..+.+.. +.||++..... +.. ..+.+.+|||+|++++..++..+++.+++
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 34678999999999999999999999998876 78888855443 333 34788999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
+++|+|++++++|+.+..|+..+.... .++.|+++|+||+|+.+. ...++..+. ++..+++|++|||++|.|
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~-----a~~~~~~~~e~SAktg~n 162 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERK-----AKELNVMFIETSAKAGYN 162 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEEEBTTTTBS
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhH-----HHHhCCeeEEEeCCCCcC
Confidence 999999999999999999999886553 368999999999999643 233333222 223456799999999999
Q ss_pred hHHHHHHHHHHHhh
Q 030149 166 LFEGLDWLSNTLKS 179 (182)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (182)
|+++|+.|.+.+..
T Consensus 163 V~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 163 VKQLFRRVAAALPG 176 (216)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988754
No 11
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=2.8e-36 Score=204.09 Aligned_cols=171 Identities=31% Similarity=0.605 Sum_probs=136.0
Q ss_pred HHhhhh-cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCC
Q 030149 7 RLFSSL-FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 7 ~~~~~~-~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (182)
..++.. +..+.++|+++|++|+|||||++++.++.+..+.||.+.+...+.+++..+.+|||||++.+...+..+++.+
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAI 93 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGC
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcC
Confidence 344443 5577899999999999999999999998887788888888888888889999999999999999999999999
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccc---------c---cCCcc
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHK---------I---KNRQW 153 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~---------~---~~~~~ 153 (182)
|++++|+|+++++++.....|+..+.......+.|+++|+||+|+.+....++..+.+.... . ....+
T Consensus 94 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (198)
T 1f6b_A 94 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPL 173 (198)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceE
Confidence 99999999999999999999999887765556899999999999987656666666554321 1 12467
Q ss_pred EEEEecccCCCChHHHHHHHHHHH
Q 030149 154 AIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 154 ~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
++++|||++|+|++++|++|.+.+
T Consensus 174 ~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 174 EVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EEEECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc
Confidence 899999999999999999997654
No 12
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=6.8e-36 Score=200.63 Aligned_cols=168 Identities=34% Similarity=0.675 Sum_probs=145.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.++.++|+|+|++|+|||||++++.++.+.. +.+|.+.....+...+..+.+|||||++.+...+..+++.+|++++|+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 98 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV 98 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEE
Confidence 3678999999999999999999999888764 788999888888889999999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
|+++++++.....|+..+.......+.|+++|+||+|+......+++.+.+........+++++++||++|.|+++++++
T Consensus 99 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 178 (188)
T 1zd9_A 99 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQW 178 (188)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHH
Confidence 99999999999999988877655578999999999999876666777766665555556788999999999999999999
Q ss_pred HHHHHhhcC
Q 030149 173 LSNTLKSIG 181 (182)
Q Consensus 173 l~~~~~~~~ 181 (182)
|.+.+.+.+
T Consensus 179 l~~~~~~~~ 187 (188)
T 1zd9_A 179 LIQHSKSRR 187 (188)
T ss_dssp HHHTCC---
T ss_pred HHHHHHhhc
Confidence 998876543
No 13
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=6.6e-36 Score=199.57 Aligned_cols=164 Identities=48% Similarity=0.851 Sum_probs=142.8
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
...+.++|+++|++|+|||||++++.++.+..+.+|.+.....+.+++..+.+|||||++.+...+..+++.+|++++|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 96 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV 96 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 34678999999999999999999999999877888988888888889999999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.+........+++++++||++|+|+++++++
T Consensus 97 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 176 (181)
T 2h17_A 97 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEW 176 (181)
T ss_dssp ETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHH
Confidence 99999999999999988877654578999999999999876667777777665555556778999999999999999999
Q ss_pred HHHH
Q 030149 173 LSNT 176 (182)
Q Consensus 173 l~~~ 176 (182)
|.+.
T Consensus 177 l~~~ 180 (181)
T 2h17_A 177 MMSR 180 (181)
T ss_dssp HHTC
T ss_pred HHhh
Confidence 8764
No 14
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=1.5e-35 Score=200.45 Aligned_cols=168 Identities=37% Similarity=0.682 Sum_probs=143.6
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc--cccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.+..+|+|+|++|+|||||++++.+..+.. +.+|.+.....+......+.+|||||++.+...+..+++.+|++|+
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 92 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIF 92 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEE
Confidence 44688999999999999999999999988765 4889998888888899999999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhccc-------CCCeEEEEeecCCCCCCCCHHHHHHHhccccc-cCCccEEEEecccC
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEEL-------RGAVVLIFANKQDLPGALDDAAVTEALELHKI-KNRQWAIFKTSAIK 162 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~ 162 (182)
|+|+++++++.....|+..+...... .+.|+++|+||+|+.+....+++.+.+..... ...+++++++||++
T Consensus 93 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 172 (199)
T 4bas_A 93 VVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLK 172 (199)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTT
T ss_pred EEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCC
Confidence 99999999999999999888765332 27899999999999887777777776664433 55678899999999
Q ss_pred CCChHHHHHHHHHHHhhc
Q 030149 163 GEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~~~ 180 (182)
|+|++++|++|.+.+.+.
T Consensus 173 g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 173 GTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHH
Confidence 999999999999988765
No 15
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-35 Score=196.82 Aligned_cols=169 Identities=43% Similarity=0.785 Sum_probs=140.6
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCC--CcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGE--VVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
...+.++|+++|++|+|||||++++.+.. ...+.+|.+.....+.+++..+.+|||||++.+...+..+++.+|++++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIF 96 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 34678999999999999999999999887 3347788888888888889999999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhccc--CCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEEL--RGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|+++++++.....|+..+...... .+.|+++|+||+|+.+....+++.+.+........+++++++||++|.|+++
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 176 (190)
T 2h57_A 97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQE 176 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHH
Confidence 99999999999999998888766443 5799999999999987666677766665333344577899999999999999
Q ss_pred HHHHHHHHHhhcC
Q 030149 169 GLDWLSNTLKSIG 181 (182)
Q Consensus 169 l~~~l~~~~~~~~ 181 (182)
++++|.+.+.+..
T Consensus 177 l~~~l~~~i~~~k 189 (190)
T 2h57_A 177 GVDWLQDQIQTVK 189 (190)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887653
No 16
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=208.58 Aligned_cols=167 Identities=61% Similarity=1.074 Sum_probs=146.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
..+.++|+|+|++|+|||||++++.+..+....||.+.....+...+..+.+|||||++.+..++..+++.+|++|+|+|
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D 241 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 35678999999999999999999999988887789999988999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
+++++++.....++..++......+.|+++|+||+|+.+....+++...+........+++++++||++|.|++++|+.|
T Consensus 242 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 242 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 321 (329)
T ss_dssp TTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence 99999999999999988877666789999999999998877788888888777667778899999999999999999999
Q ss_pred HHHHhhc
Q 030149 174 SNTLKSI 180 (182)
Q Consensus 174 ~~~~~~~ 180 (182)
.+.+.+.
T Consensus 322 ~~~l~~~ 328 (329)
T 3o47_A 322 SNQLRNQ 328 (329)
T ss_dssp HHHHTC-
T ss_pred HHHHHhc
Confidence 9988654
No 17
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=100.00 E-value=4.3e-33 Score=211.80 Aligned_cols=166 Identities=55% Similarity=1.017 Sum_probs=150.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
.+.++|+++|.+|+|||||++++.+..+..+.||.+.....+.+.+..+.+|||||++.+..++..+++.+|++|+|+|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~ 399 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDC 399 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEET
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEEC
Confidence 56799999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
++++++.....++..++......++|+++|+||+|+.+....+++.+.+.........++++++||++|+|+++++++|.
T Consensus 400 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 479 (497)
T 3lvq_E 400 ADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 479 (497)
T ss_dssp TCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999988776667899999999999987777788888777666667788999999999999999999999
Q ss_pred HHHhhc
Q 030149 175 NTLKSI 180 (182)
Q Consensus 175 ~~~~~~ 180 (182)
+.+.+.
T Consensus 480 ~~~~~~ 485 (497)
T 3lvq_E 480 SNYKSK 485 (497)
T ss_dssp HHCC--
T ss_pred HHHHhc
Confidence 987664
No 18
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=6.6e-34 Score=187.14 Aligned_cols=160 Identities=14% Similarity=0.109 Sum_probs=106.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
.+||+++|++|+|||||++++.+.......++.+.+.. .+.. ....+.+||+||++.+...+..+++.+|++++|+|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 58999999999999999999998776666665554433 2333 45678999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
++++++++....|+..+.......+.|+++|+||+|+.+.... .+....+. ...+++++++||++|+|++++|++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~ 157 (166)
T 3q72_A 82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA----VVFDCKFIETSAALHHNVQALFEG 157 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHH----HHTTCEEEECBGGGTBSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHH----HHhCCcEEEeccCCCCCHHHHHHH
Confidence 9999999999999998887665678999999999999754221 22222221 223468999999999999999999
Q ss_pred HHHHHhhc
Q 030149 173 LSNTLKSI 180 (182)
Q Consensus 173 l~~~~~~~ 180 (182)
+.+.+.+.
T Consensus 158 l~~~~~~~ 165 (166)
T 3q72_A 158 VVRQIRLR 165 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998765
No 19
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.1e-33 Score=187.29 Aligned_cols=162 Identities=17% Similarity=0.217 Sum_probs=129.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.++.+.. +.+|.+... ..+..++ ..+.+|||||++.+...+..+++.+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 568999999999999999999999777655 667776443 3334444 678999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|++++++++.+..|+..+.......+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA-----ESWNAAFLESSAKENQTAVD 158 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCTTSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHH-----HHhCCcEEEEecCCCCCHHH
Confidence 99999999999999999888777666789999999999996432 223332222 22356799999999999999
Q ss_pred HHHHHHHHHhhcC
Q 030149 169 GLDWLSNTLKSIG 181 (182)
Q Consensus 169 l~~~l~~~~~~~~ 181 (182)
+|+.+.+.+.+..
T Consensus 159 l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 159 VFRRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987653
No 20
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=9.6e-34 Score=186.84 Aligned_cols=159 Identities=23% Similarity=0.393 Sum_probs=126.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+.++|+++|++|+|||||++++.+..+.. +.++.+... ..+.+. ...+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999888765 667777443 344443 4589999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC----HHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD----DAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+..... ..+....+. ...+++++++||++|.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~----~~~~~~~~~~Sa~~~~gi 156 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLA----EEKGLLFFETSAKTGENV 156 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH----HHHTCEEEECCTTTCTTH
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCH
Confidence 999999999999988888776553 36799999999999864311 111112221 223467999999999999
Q ss_pred HHHHHHHHHHHhh
Q 030149 167 FEGLDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (182)
++++++|.+.+.+
T Consensus 157 ~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 157 NDVFLGIGEKIPL 169 (170)
T ss_dssp HHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887643
No 21
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=4.8e-33 Score=186.15 Aligned_cols=160 Identities=14% Similarity=0.243 Sum_probs=126.1
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.+.+||+++|++|+|||||++++.++.+.. +.+|.+.....+.+.+ ..+.+|||+|++.+. +++.+|+++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 44788999999999999999999999988766 6666554445566655 667889999998766 667799999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC----CCCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG----ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
+|+|++++.++..+..|+..+.......+.|+++|+||+|+.+ ....++..+... ....++++++||++|.|
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLST----DLKRCTYYETCATYGLN 166 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHH----HTTTCEEEEEBTTTTBT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHH----HcCCCeEEEecCCCCCC
Confidence 9999999999999999988887665446799999999999842 222233322222 12236799999999999
Q ss_pred hHHHHHHHHHHHhhcC
Q 030149 166 LFEGLDWLSNTLKSIG 181 (182)
Q Consensus 166 i~~l~~~l~~~~~~~~ 181 (182)
++++|+++.+.+.+.+
T Consensus 167 v~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 167 VERVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887654
No 22
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=4.3e-33 Score=184.67 Aligned_cols=161 Identities=14% Similarity=0.077 Sum_probs=116.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccccccee--EEEEEEcC--eEEEEEEcCCCCC--CcchhhhccCCCCeE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN--VETVQYNN--IKFQVWDLGGQTS--IRPYWRCYFPNTQAI 88 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~--~~~~~~~~~~~~d~i 88 (182)
.+.++|+++|++|+|||||++++.+..+....++.+.+ ...+.+++ ..+.+|||||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 46789999999999999999999998877655555543 34445544 5789999999887 566677888999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
++|+|++++.+++....|+..+.......+.|+++|+||+|+.+.. ..++.... . ...+++++++||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~-~----~~~~~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRAC-A----VVFDCKFIETSATLQHNV 156 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHH-H----HHHTSEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHH-H----HHcCCeEEEEecCCCCCH
Confidence 9999999999999998888877665444579999999999997532 22222221 1 123467999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030149 167 FEGLDWLSNTLKSI 180 (182)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (182)
+++|++|.+.+.+.
T Consensus 157 ~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 157 AELFEGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988654
No 23
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=4e-32 Score=178.63 Aligned_cols=159 Identities=19% Similarity=0.214 Sum_probs=127.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.++|+++|++|+|||||++++.++.+.. +.+|.+.... .+.. ....+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 56899999999999999999999887765 5666664432 2223 346799999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|++++++++....|+..+.......+.|+++|+||+|+.+.. ..++...... ...+.+++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH----HccCCcEEEecCCCCCCHHHH
Confidence 9999999999988888888776555689999999999996432 2233332221 123577999999999999999
Q ss_pred HHHHHHHHh
Q 030149 170 LDWLSNTLK 178 (182)
Q Consensus 170 ~~~l~~~~~ 178 (182)
+++|.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998774
No 24
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.6e-33 Score=189.92 Aligned_cols=162 Identities=14% Similarity=0.177 Sum_probs=126.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE---EEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET---VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..+.++|+++|++|+|||||++++.+..+.. +.+|.+..... +......+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 3678999999999999999999999888766 55666644322 2225688999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|+++++++..+..|+..+.......+.|+++|+||+|+.+.. ...+... +. ...+++++++||++|.|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~~v~ 175 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKK-LA----ESWGATFMESSARENQLTQ 175 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHH-HH----HHHTCEEEECCTTCHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHH-HH----HHhCCeEEEEeCCCCCCHH
Confidence 999999999999999999988776666689999999999986432 2222222 21 2234679999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|+.|.+.+.+.
T Consensus 176 ~l~~~l~~~i~~~ 188 (201)
T 3oes_A 176 GIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988765
No 25
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=5.1e-32 Score=181.56 Aligned_cols=162 Identities=19% Similarity=0.247 Sum_probs=126.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce-eEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|... ....+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 467999999999999999999999888765 4455542 233344444 457889999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
|+|++++.++.....|+..+.......+.|+++|+||+|+.+.....+....+.. ..+++++++||++|.|+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR----SYGIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH----HHTCCEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH----HcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999988887666678999999999999754333333333322 224579999999999999999
Q ss_pred HHHHHHHhhc
Q 030149 171 DWLSNTLKSI 180 (182)
Q Consensus 171 ~~l~~~~~~~ 180 (182)
++|.+.+.+.
T Consensus 158 ~~l~~~~~~~ 167 (189)
T 4dsu_A 158 YTLVREIRKH 167 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988653
No 26
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=8.2e-33 Score=184.17 Aligned_cols=163 Identities=18% Similarity=0.245 Sum_probs=131.8
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.+.+.++|+++|++|+|||||++++.+..+.. +.+|.+.... .+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 45678999999999999999999999887765 5666664433 344444 6789999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
++|+|+++++++.....|+..+.......+.|+++|+||+|+.+.. ..++.. .+. ...+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~----~~~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEAS-AFG----ASHHVAYFEASAKLRLNV 159 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHH-HHH----HHTTCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHH-HHH----HHcCCeEEEecCCCCCCH
Confidence 9999999999999999999888776666789999999999996432 222222 221 223568999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030149 167 FEGLDWLSNTLKSI 180 (182)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (182)
++++++|.+.+.+.
T Consensus 160 ~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 160 DEAFEQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
No 27
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.9e-32 Score=181.54 Aligned_cols=161 Identities=20% Similarity=0.313 Sum_probs=130.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+... ..+.+. ...+.+|||||++.+...+..+++.+|++|
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 467999999999999999999999888765 667766443 334443 478999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC-CHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL-DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
+|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ..++..+.. ...+++++++||++|.|+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA-----RKHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHHH
Confidence 999999999999988888888765545689999999999995432 223332222 22356799999999999999
Q ss_pred HHHHHHHHHhhc
Q 030149 169 GLDWLSNTLKSI 180 (182)
Q Consensus 169 l~~~l~~~~~~~ 180 (182)
++++|.+.+.+.
T Consensus 168 l~~~l~~~~~~~ 179 (195)
T 1x3s_A 168 AFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhh
Confidence 999999988654
No 28
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=1e-32 Score=183.43 Aligned_cols=162 Identities=21% Similarity=0.304 Sum_probs=128.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc--eeEEEEEEcC---eEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN---IKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~--~~~~~~~~~~---~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
..+.++|+++|++|+|||||++++.+..+.. +.||.+ .....+.+.+ ..+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 3578999999999999999999999888755 566766 4455666654 789999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcc-cCCCe-EEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCC
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEE-LRGAV-VLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKG 163 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~-iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (182)
+++|+|+++++++.....|+..+..... ....| +++|+||+|+.+. ...++...... ..+++++++||++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 157 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ-----ENGFSSHFVSAKTG 157 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEEECTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH-----HcCCcEEEEeCCCC
Confidence 9999999999999888888777655321 12344 8999999999642 22233322221 23467999999999
Q ss_pred CChHHHHHHHHHHHhhc
Q 030149 164 EGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 164 ~gi~~l~~~l~~~~~~~ 180 (182)
.|++++|++|.+.+.+.
T Consensus 158 ~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 158 DSVFLCFQKVAAEILGI 174 (178)
T ss_dssp TTHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999988765
No 29
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.4e-31 Score=177.69 Aligned_cols=163 Identities=15% Similarity=0.284 Sum_probs=128.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
..+.++|+++|++|+|||||++++.+..+.. +.+|.+... ..+.+++ ..+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 3567999999999999999999999888765 667776543 4444554 6899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcc---cCCCeEEEEeecCCCCCC-CCHHHHHHHhccccccCCccEEEEecccCCC
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEE---LRGAVVLIFANKQDLPGA-LDDAAVTEALELHKIKNRQWAIFKTSAIKGE 164 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (182)
++|+|++++.++.....|+..+..... ..+.|+++|+||+|+... ...++..+... ....++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 159 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDAT 159 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 999999999999988888877765432 257899999999999632 23333333222 1345679999999999
Q ss_pred ChHHHHHHHHHHHhhc
Q 030149 165 GLFEGLDWLSNTLKSI 180 (182)
Q Consensus 165 gi~~l~~~l~~~~~~~ 180 (182)
|++++|+++.+.+.+.
T Consensus 160 gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 160 NVAAAFEEAVRRVLAT 175 (177)
T ss_dssp THHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988654
No 30
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=1.2e-31 Score=179.13 Aligned_cols=162 Identities=17% Similarity=0.176 Sum_probs=129.8
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.+.+.++|+++|++|+|||||++++.+..+.. +.+|.+... ..+...+ ..+.+|||||++.+...+..+++.+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 34678999999999999999999999887665 566666443 2333344 4567799999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEeccc-CCCC
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAI-KGEG 165 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~-~~~g 165 (182)
++|+|+++++++..+..|+..+.......+.|+++|+||+|+.+. ...++..+... ..+++++++||+ +|.|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~~ 168 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-----KYNIPYIETSAKDPPLN 168 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-----HHTCCEEEEBCSSSCBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH-----HhCCeEEEeccCCCCCC
Confidence 999999999999999999888877666678999999999999652 23333322222 223669999999 9999
Q ss_pred hHHHHHHHHHHHhh
Q 030149 166 LFEGLDWLSNTLKS 179 (182)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (182)
++++|+.|.+.+.+
T Consensus 169 v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 169 VDKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998865
No 31
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=1.3e-32 Score=180.93 Aligned_cols=160 Identities=18% Similarity=0.236 Sum_probs=126.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+... ..+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 467899999999999999999999888765 555655433 2344444 589999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++...... ..+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-----QWNVNYVETSAKTRANVDK 156 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCCCCCHHH
Confidence 9999999999999999888877665568999999999998643 22333333222 2345799999999999999
Q ss_pred HHHHHHHHHhh
Q 030149 169 GLDWLSNTLKS 179 (182)
Q Consensus 169 l~~~l~~~~~~ 179 (182)
+++++.+.+.+
T Consensus 157 l~~~l~~~i~~ 167 (168)
T 1u8z_A 157 VFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998864
No 32
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=181.99 Aligned_cols=160 Identities=21% Similarity=0.324 Sum_probs=125.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc--eeEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+ .....+.+++ ..+.+|||||++.+...+..+++.+|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 567999999999999999999999888765 666766 3345555555 68999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCcc-EEEEecccCCCCh
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQW-AIFKTSAIKGEGL 166 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~gi 166 (182)
+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..+... ..++ +++++||++|.|+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAE-----HYDILCAIETSAKDSSNV 180 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCSEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHH-----HcCCCEEEEEeCCCCCCH
Confidence 9999999999999888888776543 367999999999999642 23333333222 2345 7999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030149 167 FEGLDWLSNTLKSI 180 (182)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (182)
+++|++|.+.+.+.
T Consensus 181 ~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 181 EEAFLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
No 33
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=4.7e-32 Score=182.85 Aligned_cols=160 Identities=24% Similarity=0.348 Sum_probs=129.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.++.+.. ...+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 567999999999999999999999888765 56666644 44455555 68999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH--HHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD--AAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++.....|+..+... ...+.|+++|+||+|+...... .+... +. ...+++++++||++|.|++
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKE-FA----DSLGIPFLETSAKNATNVE 167 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHH-HH----HHTTCCEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccCHHHHHH-HH----HHcCCcEEEEeCCCCCCHH
Confidence 999999999999998888777554 3357899999999999754322 22222 21 2234579999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|++|.+.+.+.
T Consensus 168 ~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 168 QSFMTMAAEIKKR 180 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
No 34
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=2.9e-32 Score=181.67 Aligned_cols=162 Identities=23% Similarity=0.309 Sum_probs=128.0
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
.+.+.++|+++|++|+|||||++++.+..+.. +.++.+.. ...+.+. ...+.+|||||++.+...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 44678999999999999999999999888766 45666643 3344444 4689999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
+|+|+|++++.+++....|+..+.... .++.|+++|+||+|+.+.. ..++..+.. ...+++++++||++|+|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~g 161 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYA-----QENGLFFMETSAKTATN 161 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCSSSCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCC
Confidence 999999999999999888888876543 3589999999999996432 233333322 22356799999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 030149 166 LFEGLDWLSNTLKSI 180 (182)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (182)
+++++++|.+.+.+.
T Consensus 162 i~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 162 VKEIFYEIARRLPRV 176 (181)
T ss_dssp HHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887654
No 35
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.5e-32 Score=181.78 Aligned_cols=161 Identities=19% Similarity=0.341 Sum_probs=120.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCc--ccccccceeEEE--EEEcC--eEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV--STIPTIGFNVET--VQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~--~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
..+.++|+++|++|+|||||++++.+..+. .+.+|.+..... +...+ ..+.+|||||++.+...+..+++.+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 467899999999999999999999988875 366777655443 34444 589999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
+++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.++. ..++...... ..+++++++||++|.|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-----EYGLPFMETSAKTGLN 160 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEeCCCCCC
Confidence 9999999999999988888877765432 679999999999997542 2223222221 2245799999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 030149 166 LFEGLDWLSNTLKSI 180 (182)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (182)
++++++++.+.+.+.
T Consensus 161 i~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 161 VDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988764
No 36
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=4.4e-32 Score=182.86 Aligned_cols=161 Identities=17% Similarity=0.277 Sum_probs=124.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE-EEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+..... +... ...+.+|||||++.+...+..+++.+|++++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 100 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLL 100 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEE
Confidence 567999999999999999999999988765 66777644433 3333 3567999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC----CCHHHHHHHhccccccCCccE-EEEecccCCCC
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA----LDDAAVTEALELHKIKNRQWA-IFKTSAIKGEG 165 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~g 165 (182)
|+|+++++++..+...|...+... ..+.|+++|+||+|+.++ ...++..+... ..+++ ++++||++|.|
T Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 174 (194)
T 3reg_A 101 CFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQ-----KLGCVAYIEASSVAKIG 174 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHH-----HHTCSCEEECBTTTTBS
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHH-----hcCCCEEEEeecCCCCC
Confidence 999999999998744444333332 357999999999999643 22233322222 12344 99999999999
Q ss_pred hHHHHHHHHHHHhhcC
Q 030149 166 LFEGLDWLSNTLKSIG 181 (182)
Q Consensus 166 i~~l~~~l~~~~~~~~ 181 (182)
++++|+.|.+.+.+..
T Consensus 175 i~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 175 LNEVFEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999887653
No 37
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=4.7e-32 Score=184.16 Aligned_cols=164 Identities=18% Similarity=0.224 Sum_probs=130.9
Q ss_pred hhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCC
Q 030149 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQ 86 (182)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (182)
...+.+.++|+|+|++|+|||||++++.+..+.. +.+|.+... ..+.+.+ ..+.+|||||++.+...+..+++.+|
T Consensus 8 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 87 (206)
T 2bov_A 8 GQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 87 (206)
T ss_dssp ---CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence 3445678999999999999999999999888755 556665433 3444444 58999999999999999999999999
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCC
Q 030149 87 AIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGE 164 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (182)
++++|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++...... ..+++++++||++|.
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~ 162 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAKTRA 162 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH-----HhCCeEEEEeCCCCC
Confidence 99999999999999999999888877655568999999999999643 22333333322 234579999999999
Q ss_pred ChHHHHHHHHHHHhh
Q 030149 165 GLFEGLDWLSNTLKS 179 (182)
Q Consensus 165 gi~~l~~~l~~~~~~ 179 (182)
|++++|++|.+.+.+
T Consensus 163 gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 163 NVDKVFFDLMREIRA 177 (206)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988765
No 38
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.2e-32 Score=181.50 Aligned_cols=159 Identities=23% Similarity=0.339 Sum_probs=127.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
+.+.++|+++|++|+|||||++++.++.+.. +.++.+... ..+... ...+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 3567999999999999999999999887766 556666443 334443 57899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
++|+|++++.++.....|+..+.... .++.|+++|+||+|+.+. ...++..+.. ...+++++++||++|.|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi 156 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYA-----DDNSLLFMETSAKTSMNV 156 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCH
Confidence 99999999999999888888776543 357999999999998643 2223332222 224568999999999999
Q ss_pred HHHHHHHHHHHh
Q 030149 167 FEGLDWLSNTLK 178 (182)
Q Consensus 167 ~~l~~~l~~~~~ 178 (182)
++++++|.+.+.
T Consensus 157 ~~l~~~i~~~~~ 168 (170)
T 1r2q_A 157 NEIFMAIAKKLP 168 (170)
T ss_dssp HHHHHHHHHTSC
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 39
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=2.8e-32 Score=179.91 Aligned_cols=159 Identities=19% Similarity=0.260 Sum_probs=120.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+.... .+..+ ...+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 567999999999999999999999888765 6677765443 34443 357899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|+++++++.....|+..+... ...+.|+++|+||+|+.++ ...++..+.. ...+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYA-----ESVGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCHH
Confidence 999999999999988888776543 2357999999999999643 2233333222 2234679999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
+++++|.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 40
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=9.6e-33 Score=184.37 Aligned_cols=160 Identities=23% Similarity=0.337 Sum_probs=101.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.||.+.. ...+.+++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 467999999999999999999999877654 66666644 34455555 78999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLA-----LDYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHH-----HHHTCEEEECCC---CCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 999999999999988888777554 23578999999999997532 233332222 1234679999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|++|.+.+.+.
T Consensus 160 ~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 160 NAFFTLARDIKAK 172 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 41
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=4.4e-32 Score=182.15 Aligned_cols=161 Identities=21% Similarity=0.345 Sum_probs=128.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
..+.++|+++|++|+|||||++++.+..+.. +.++.+... ..+... ...+.+|||||++.+...+..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 3567999999999999999999999888765 566766444 334443 46899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
++|+|++++.+++....|+..+... ...+.|+++|+||+|+.+.. ..++..+... ..+++++++||++|.|+
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLAD-----DLGFEFFEASAKENINV 172 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHHH-----HcCCeEEEEECCCCCCH
Confidence 9999999999999888888777554 33579999999999996432 2223222221 12457999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030149 167 FEGLDWLSNTLKSI 180 (182)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (182)
++++++|.+.+.+.
T Consensus 173 ~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 173 KQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987653
No 42
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.6e-32 Score=181.07 Aligned_cols=159 Identities=25% Similarity=0.393 Sum_probs=126.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce--eEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.++.+. ....+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 577999999999999999999999887665 5666653 344555555 78999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++.....|+..+.... .+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 159 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFA-----GQMGIQLFETSAKENVNVE 159 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHH-----HHcCCeEEEEECCCCCCHH
Confidence 9999999999999988888876543 479999999999986432 222222221 1224579999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
+++++|.+.+.+.
T Consensus 160 ~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 160 EMFNCITELVLRA 172 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
No 43
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=1.9e-32 Score=180.60 Aligned_cols=160 Identities=12% Similarity=0.081 Sum_probs=116.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcC--eEEEEEEcCCCCCCcc-hhhhccCCCCeEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN--IKFQVWDLGGQTSIRP-YWRCYFPNTQAIIY 90 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii~ 90 (182)
.++|+++|++|+|||||++++.+..... ..++.......+..++ ..+.+|||||++.+.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 4799999999999999999998766544 2233444445555544 6788999999988776 66777888999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|++++++++....|+..+.......+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-----GTLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHH-----HHcCCcEEEecCccCCCHHH
Confidence 9999999999999999998887665568999999999999632 2223322222 23356899999999999999
Q ss_pred HHHHHHHHHhhcC
Q 030149 169 GLDWLSNTLKSIG 181 (182)
Q Consensus 169 l~~~l~~~~~~~~ 181 (182)
+|+.+.+.+...+
T Consensus 157 l~~~l~~~i~~~r 169 (169)
T 3q85_A 157 LFEGAVRQIRLRR 169 (169)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999987653
No 44
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=8.3e-32 Score=177.60 Aligned_cols=160 Identities=27% Similarity=0.386 Sum_probs=122.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..++|+++|++|+|||||++++.+..+.. +.++.+.. ...+... ...+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999888755 56666643 3444444 3689999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.......+....+.. ..+++++++||++|.|+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~~l~ 156 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK----ELGIPFIESSAKNDDNVNEIF 156 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHH----HHTCCEEECBTTTTBSHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHH----HcCCeEEEEECCCCCCHHHHH
Confidence 999999999988888887775543 357899999999999543222222222221 124579999999999999999
Q ss_pred HHHHHHHhhc
Q 030149 171 DWLSNTLKSI 180 (182)
Q Consensus 171 ~~l~~~~~~~ 180 (182)
++|.+.+.+.
T Consensus 157 ~~l~~~~~~~ 166 (170)
T 1g16_A 157 FTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 45
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=9.7e-33 Score=181.46 Aligned_cols=159 Identities=18% Similarity=0.223 Sum_probs=127.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee-EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.++|+++|++|+|||||++++.++.+.. +.+|.+.. ...+...+ ..+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 56899999999999999999999887765 55555532 33444444 5699999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++...... ..+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-----EWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH-----HhCCCEEEecCCCCcCHHHH
Confidence 9999999999999999888776655689999999999986432 2222222211 12457999999999999999
Q ss_pred HHHHHHHHhh
Q 030149 170 LDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~~~~ 179 (182)
+++|.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (167)
T 1kao_A 157 FAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 46
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-31 Score=181.14 Aligned_cols=166 Identities=16% Similarity=0.218 Sum_probs=127.8
Q ss_pred hhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEEc--CeEEEEEEcCCCCCCcchhhhccCC
Q 030149 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPN 84 (182)
Q Consensus 9 ~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~ 84 (182)
+.+..+.+.++|+++|++|+|||||++++.+..+.. +.+|.+.... .+..+ ...+.+|||||++. ...+..+++.
T Consensus 20 ~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~ 98 (196)
T 2atv_A 20 FQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRW 98 (196)
T ss_dssp -------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHH
T ss_pred hhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhcc
Confidence 344455788999999999999999999999888765 5666664432 24444 46799999999988 7788888999
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccC
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
+|++++|+|++++++++.+..|+..+.......+.|+++|+||+|+.+. ...++...... ..+++++++||++
T Consensus 99 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~ 173 (196)
T 2atv_A 99 GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT-----ELACAFYECSACT 173 (196)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSEEEECCTTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH-----HhCCeEEEECCCc
Confidence 9999999999999999999888888876655568999999999999642 22233322221 1256899999999
Q ss_pred CC-ChHHHHHHHHHHHhhc
Q 030149 163 GE-GLFEGLDWLSNTLKSI 180 (182)
Q Consensus 163 ~~-gi~~l~~~l~~~~~~~ 180 (182)
|. |++++|++|.+.+.+.
T Consensus 174 g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 174 GEGNITEIFYELCREVRRR 192 (196)
T ss_dssp CTTCHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhh
Confidence 99 9999999999988764
No 47
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=4.2e-32 Score=179.02 Aligned_cols=159 Identities=26% Similarity=0.338 Sum_probs=126.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.++.+.... .+.+. ...+.+|||||.+.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 467999999999999999999999988655 6677775443 34443 478999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++.....|+..+... ..+..|+++|+||+|+.+... .++... +. ...+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKD-YA----DSIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHH-HH----HHTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHH-HH----HHcCCEEEEEeCCCCcCHH
Confidence 999999999999888887777543 346899999999999964322 222222 21 2235679999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
+++++|.+.+.+
T Consensus 158 ~l~~~i~~~i~~ 169 (170)
T 1z0j_A 158 ELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999987653
No 48
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-32 Score=185.17 Aligned_cols=159 Identities=23% Similarity=0.324 Sum_probs=127.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.++.+.. +.+|.+... ..+.+++ ..+.+|||||++.+...+..+++.+|++|
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 467999999999999999999999888765 667776443 3455544 58999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFS-----EAQDMYYLETSAKESDNVE 177 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCCEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 999999999999888888777544 3357899999999999642 2223322221 1234679999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
++|++|.+.+.+
T Consensus 178 ~l~~~l~~~i~~ 189 (201)
T 2ew1_A 178 KLFLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 49
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=3.3e-31 Score=178.30 Aligned_cols=162 Identities=21% Similarity=0.366 Sum_probs=130.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE---EEEEc-----------CeEEEEEEcCCCCCCcchh
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE---TVQYN-----------NIKFQVWDLGGQTSIRPYW 78 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~---~~~~~-----------~~~~~~~D~~g~~~~~~~~ 78 (182)
..+.++|+++|++|+|||||++++.+..+.. +.+|.+.... .+... ...+.+|||||++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 4667999999999999999999999887755 6777776544 33333 4689999999999999999
Q ss_pred hhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEE
Q 030149 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIF 156 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
..+++.+|++|+|+|++++.++..+..|+..+.......+.|+++|+||+|+.+. ...++..+... ..+++++
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~ 162 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE-----KYGIPYF 162 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCCEE
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCCEE
Confidence 9999999999999999999999998888888876654468999999999999642 22333332222 1245799
Q ss_pred EecccCCCChHHHHHHHHHHHhhc
Q 030149 157 KTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 157 ~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
++||++|.|+++++++|.+.+.+.
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999887653
No 50
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.8e-31 Score=178.65 Aligned_cols=160 Identities=23% Similarity=0.286 Sum_probs=128.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEE--EE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETV--QY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~--~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.++.+.+.... .. ....+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 678999999999999999999999988764 777777554433 33 4578999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC--CCCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG--ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+ ....++..+.. ...+++++++||++|.|++
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 174 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYA-----ESIGAIVVETSAKNAINIE 174 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HTTTCEEEECBTTTTBSHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcCHH
Confidence 999999999999998888777554 335799999999999964 22333333332 2345789999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
+++++|.+.+.+.
T Consensus 175 ~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 175 ELFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhh
Confidence 9999999877543
No 51
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=4.9e-32 Score=180.18 Aligned_cols=157 Identities=13% Similarity=0.170 Sum_probs=120.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccccccee-EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+.++|+++|++|+|||||++++.++.+..+.||.+.. ...+..++ ..+.+|||||++. ..+++++|++++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv 79 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV 79 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence 57899999999999999999999999887777777743 33344443 6789999999876 4567789999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhc--ccCCCeEEEEeecCCCCC----CCCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 92 VDSSDTERLVIAKDEFHAILEEE--ELRGAVVLIFANKQDLPG----ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~iivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
+|+++++++..+..|+..+.... ...+.|+++|+||+|+.. ....++..+... ...+++++++||++|.|
T Consensus 80 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~~ 155 (178)
T 2iwr_A 80 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA----DMKRCSYYETXATYGLN 155 (178)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----HHSSEEEEEEBTTTTBT
T ss_pred EECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH----hhcCCeEEEEeccccCC
Confidence 99999999999988755443332 235789999999999842 222333322221 11356899999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 030149 166 LFEGLDWLSNTLKSI 180 (182)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (182)
++++|+.+.+.+.+.
T Consensus 156 i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 156 VDRVFQEVAQKVVTL 170 (178)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887653
No 52
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=9.7e-32 Score=182.78 Aligned_cols=160 Identities=24% Similarity=0.370 Sum_probs=128.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+.. ...+.+.+ ..+.+|||||++.+...+..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 567999999999999999999999888765 56666643 34455544 58999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999999988887775543 3579999999999997532 223322222 2234679999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|++|.+.+.+.
T Consensus 160 ~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 160 DAFLTMARQIKES 172 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
No 53
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=3e-31 Score=180.36 Aligned_cols=162 Identities=16% Similarity=0.230 Sum_probs=127.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE--EEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
..+.++|+|+|++|+|||||++++.+..+.. +.+|.+..... +.+. ...+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 3577999999999999999999999888765 66676654443 3333 36899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcc---cCCCeEEEEeecCCCCCCC-CHHHHHHHhccccccCCccEEEEecccCCC
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEE---LRGAVVLIFANKQDLPGAL-DDAAVTEALELHKIKNRQWAIFKTSAIKGE 164 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (182)
|+|+|++++.++.....|+..+..... ..+.|+++|+||+|+.... ..++...... ...+++++++||++|.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~ 160 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAI 160 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 999999999999988888887765432 2468999999999997432 2233322221 1345679999999999
Q ss_pred ChHHHHHHHHHHHhh
Q 030149 165 GLFEGLDWLSNTLKS 179 (182)
Q Consensus 165 gi~~l~~~l~~~~~~ 179 (182)
|+++++++|.+.+.+
T Consensus 161 gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 161 NVEQAFQTIARNALK 175 (207)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988764
No 54
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.98 E-value=4.3e-32 Score=180.41 Aligned_cols=160 Identities=18% Similarity=0.277 Sum_probs=127.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
..+.++|+++|++|+|||||++++.+..+.. +.+|.+.. ...+... ...+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 3578999999999999999999999888765 55666643 3344443 46899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
++|+|++++.++.....|+..+... ...+.|+++|+||+|+.++ ...++..+... ..+++++++||++|.|+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAE-----ENGLLFLEASAKTGENV 165 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTH
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCH
Confidence 9999999999999888888777554 3357999999999999643 22233333222 23568999999999999
Q ss_pred HHHHHHHHHHHhh
Q 030149 167 FEGLDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (182)
+++|++|.+.+.+
T Consensus 166 ~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 166 EDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988754
No 55
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.98 E-value=1.4e-32 Score=184.53 Aligned_cols=162 Identities=25% Similarity=0.365 Sum_probs=125.1
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce--eEEEEEEcC--eEEEEEEcCCCCCCc-chhhhccCCCC
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIR-PYWRCYFPNTQ 86 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~-~~~~~~~~~~d 86 (182)
...+.++|+++|++|+|||||++++.++.+.. +.++.+. ....+...+ ..+.+|||||++.+. ..+..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 44678999999999999999999999888765 5666663 344455544 689999999998887 78888999999
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCC-
Q 030149 87 AIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKG- 163 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~- 163 (182)
++|+|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ..++.. .+. ...+++++++||++|
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~----~~~~~~~~~~Sa~~~~ 170 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQ-KFA----DTHSMPLFETSAKNPN 170 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHH-HHH----HHTTCCEEECCSSSGG
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHH-HHH----HHcCCEEEEEeCCcCC
Confidence 999999999999999999998888776656789999999999996432 222222 222 223457999999999
Q ss_pred --CChHHHHHHHHHHHhh
Q 030149 164 --EGLFEGLDWLSNTLKS 179 (182)
Q Consensus 164 --~gi~~l~~~l~~~~~~ 179 (182)
+|++++|++|.+.+.+
T Consensus 171 ~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 171 DNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGSCHHHHHHHHC-----
T ss_pred cccCHHHHHHHHHHHHhh
Confidence 9999999999887753
No 56
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.98 E-value=3.8e-32 Score=181.83 Aligned_cols=162 Identities=18% Similarity=0.231 Sum_probs=130.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+.+.++|+++|++|+|||||++++.+..+.. +.+|.+... ..+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 4577999999999999999999999888765 555655433 3344444 58999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++..+... ..+++++++||++|.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 169 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAKTRANVD 169 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCCCCCHH
Confidence 99999999999999999888877765568999999999998643 23333333322 235679999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
+++++|.+.+.+.
T Consensus 170 ~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 170 KVFFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
No 57
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.98 E-value=2e-32 Score=187.29 Aligned_cols=160 Identities=18% Similarity=0.178 Sum_probs=124.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE-E--EEcCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-V--QYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~-~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..+.++|+++|++|+|||||++++.++.+.. +.+|.+..... + ......+.+|||+|++.+..++..+++.+|++|
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 3678999999999999999999999888766 57777755432 2 224578999999999999999999999999999
Q ss_pred EEEeCCCcchHHH-HHHHHHHHHhhcccCCCeEEEEeecCCCCCC--------------CCHHHHHHHhccccccCCcc-
Q 030149 90 YVVDSSDTERLVI-AKDEFHAILEEEELRGAVVLIFANKQDLPGA--------------LDDAAVTEALELHKIKNRQW- 153 (182)
Q Consensus 90 ~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~- 153 (182)
+|+|+++++++.. ...|+..+.... .+.|+++|+||+|+.++ ...++..... ...++
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~ 176 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA-----KQLGAE 176 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH-----HHHTCS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHH-----HHcCCC
Confidence 9999999999998 566666665442 58999999999999642 2222222221 22345
Q ss_pred EEEEecccCCCC-hHHHHHHHHHHHhhc
Q 030149 154 AIFKTSAIKGEG-LFEGLDWLSNTLKSI 180 (182)
Q Consensus 154 ~~~~~S~~~~~g-i~~l~~~l~~~~~~~ 180 (182)
+++++||++|.| ++++|+.+.+.+...
T Consensus 177 ~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 177 IYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred EEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 799999999998 999999999987654
No 58
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.98 E-value=8.3e-32 Score=181.33 Aligned_cols=160 Identities=21% Similarity=0.326 Sum_probs=128.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+|+|++|+|||||++++.+..+.. +.+|.+.... .+.. ....+.+|||||++.+...+..+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 567999999999999999999999888765 5667665443 3333 4578899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|++
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFA-----ENNGLLFLETSALDSTNVE 176 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 999999999998888888777554 3357899999999999643 2223332222 2245689999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
+++++|.+.+.+.
T Consensus 177 ~l~~~l~~~i~~~ 189 (193)
T 2oil_A 177 LAFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 59
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.98 E-value=3.4e-31 Score=180.82 Aligned_cols=161 Identities=27% Similarity=0.392 Sum_probs=125.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc--eeEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
..+.++|+++|++|+|||||++++.+..+.. +.++.+ .....+.+.+ ..+.+|||||++.+...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 3567999999999999999999999888754 566666 3444555555 6899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.......+....+.. ..+++++++||++|.|+++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~ 171 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK----ELGIPFIESSAKNDDNVNE 171 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHH----HHTCCEEECBTTTTBSSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHH----HcCCEEEEEeCCCCCCHHH
Confidence 99999999999988888887775543 357899999999999533222222222221 1235799999999999999
Q ss_pred HHHHHHHHHhh
Q 030149 169 GLDWLSNTLKS 179 (182)
Q Consensus 169 l~~~l~~~~~~ 179 (182)
++++|.+.+.+
T Consensus 172 l~~~l~~~~~~ 182 (213)
T 3cph_A 172 IFFTLAKLIQE 182 (213)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 60
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.98 E-value=8.4e-32 Score=182.64 Aligned_cols=159 Identities=22% Similarity=0.359 Sum_probs=127.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+.... .+... ...+.+|||||++.+...+..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 467999999999999999999999988765 6677764443 33443 468999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+.. ..++...... ..+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLAD-----HLGFEFFEASAKDNINVK 159 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHH-----HHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHHH-----HCCCeEEEEECCCCCCHH
Confidence 999999999999888888777544 33578999999999997532 2222222221 224579999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
++|++|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (203)
T 1zbd_A 160 QTFERLVDVICE 171 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 61
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.98 E-value=4e-32 Score=182.67 Aligned_cols=160 Identities=20% Similarity=0.292 Sum_probs=125.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc--eeEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+ .....+..++ ..+.+|||||++.+...+..+++.+|++|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 567999999999999999999999888765 555555 3344455544 68999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|++
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFA-----REHGLIFMETSAKTACNVE 172 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCCccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 999999999999988888777554 2357999999999999642 2233332222 2234679999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|++|.+.+.+.
T Consensus 173 ~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 173 EAFINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 62
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.98 E-value=7.7e-32 Score=180.36 Aligned_cols=159 Identities=20% Similarity=0.319 Sum_probs=127.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.++.+.. ...+...+ ..+.+|||||++.+...+..+++.+|++|
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 567999999999999999999999888765 56666643 34444544 68999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+... ....+..... ...+++++++||++|.|++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFA-----QENELMFLETSALTGENVE 161 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHH
Confidence 9999999999998888887765442 368999999999999632 2223332222 2345789999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
++|+++.+.+.+
T Consensus 162 ~l~~~l~~~~~~ 173 (186)
T 2bme_A 162 EAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 63
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.98 E-value=7.2e-32 Score=179.76 Aligned_cols=163 Identities=18% Similarity=0.253 Sum_probs=116.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEc---CeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
..+.++|+++|++|+|||||++++.+..+.. +.++.+.. ...+.+. ...+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 3577999999999999999999999888655 56666533 3344433 4689999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcc---cCCCeEEEEeecCCCCCC---CCHHHHHHHhccccccCCccEEEEeccc
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEE---LRGAVVLIFANKQDLPGA---LDDAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
+++|+|++++.+++....|+..+..... ..+.|+++|+||+|+... ...++...... .....+++++||+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAK 160 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecC
Confidence 9999999999999998888887765432 257899999999999532 12233322221 1345679999999
Q ss_pred CCCChHHHHHHHHHHHhhc
Q 030149 162 KGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~~~~ 180 (182)
+|.|+++++++|.+.+.+.
T Consensus 161 ~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999987654
No 64
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.98 E-value=2.1e-31 Score=175.38 Aligned_cols=158 Identities=19% Similarity=0.327 Sum_probs=126.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+.. ...+... ...+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999887765 56666633 3444444 468999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++++++....|+..+.... .+.|+++|+||+|+.++ ...++...... ..+++++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK-----RLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Confidence 9999999999998888888776554 57899999999998643 22333332221 234679999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
+++++|.+.+.+
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T 1z2a_A 156 EVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 65
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.98 E-value=1.4e-30 Score=176.67 Aligned_cols=158 Identities=25% Similarity=0.341 Sum_probs=126.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEEcC-------------------------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYNN------------------------------- 60 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~~------------------------------- 60 (182)
.+.++|+|+|++|+|||||++++.+..+.. +.+|.+.... .+.+.+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 567999999999999999999999988765 6666664433 333333
Q ss_pred --------eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 61 --------IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 61 --------~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
..+.+|||||++.+...+..+++.+|++++|+|++++.++.....|+..+.... ..|+++|+||+|+.+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCccc
Confidence 789999999999999999999999999999999999999999888888776542 499999999999432
Q ss_pred -CCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 133 -ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
....++..+... ..+++++++||++|.|+++++++|.+.+.+.
T Consensus 162 ~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 162 FQVDILEVQKYAQ-----DNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp CCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 223344433332 2356899999999999999999999988754
No 66
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.98 E-value=5.1e-31 Score=172.96 Aligned_cols=160 Identities=18% Similarity=0.236 Sum_probs=125.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee-EEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.++|+++|++|+|||||++++.+..+.. +.+|.+.. ...+... ...+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 46899999999999999999999887765 45555533 2334443 35689999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
+|++++.++.....|+..+.......+.|+++|+||+|+.+.....+....+.. ..+++++++||++|.|++++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR----SYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH----HHTCCEEEECTTTCTTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH----HcCCeEEEecCCCCCCHHHHHH
Confidence 999999999998888888776655557999999999998753222222222221 1245799999999999999999
Q ss_pred HHHHHHhh
Q 030149 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~~~~ 179 (182)
+|.+.+.+
T Consensus 158 ~l~~~~~~ 165 (166)
T 2ce2_X 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998754
No 67
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.98 E-value=1.5e-31 Score=180.45 Aligned_cols=162 Identities=21% Similarity=0.269 Sum_probs=123.6
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCccc-----------ccccceeEEEEE-----EcCeEEEEEEcCCCCCCc
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVST-----------IPTIGFNVETVQ-----YNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~-----------~~t~~~~~~~~~-----~~~~~~~~~D~~g~~~~~ 75 (182)
....+.++|+++|++|+|||||++.+.+.....+ .||.+.+..... .....+.+|||||++.+.
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 3446789999999999999999987765544333 234443332221 134689999999999999
Q ss_pred chhhhccCCCCeEEEEEeCC------CcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccccc
Q 030149 76 PYWRCYFPNTQAIIYVVDSS------DTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIK 149 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 149 (182)
..+..+++.+|++|+|+|++ +.+++..+..|+..+. ....+.|+++|+||+|+.+....++..+....
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~---- 162 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP---- 162 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT----
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHHh----
Confidence 99999999999999999999 4456666666666552 23468999999999999877666666555443
Q ss_pred CCcc-EEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 150 NRQW-AIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 150 ~~~~-~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
.++ +++++||++|.|++++|++|.+.+.+.
T Consensus 163 -~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 163 -EGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp -TCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred -cCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 344 799999999999999999999988764
No 68
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.98 E-value=7.3e-31 Score=176.26 Aligned_cols=164 Identities=18% Similarity=0.239 Sum_probs=118.2
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.+.+.++|+++|.+|+|||||++++.+..+.. +.+|.+... ..+...+ ..+.+|||||++.+...+..+++.+|++
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 34677999999999999999999999887655 445554332 3344444 5699999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC-CHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL-DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ..++..+... ..+++++++||++|.|++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 171 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAK-----SYGIPFIETSAKTRQGVE 171 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 9999999999999988888877665544579999999999997532 3333333222 123569999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 030149 168 EGLDWLSNTLKSIG 181 (182)
Q Consensus 168 ~l~~~l~~~~~~~~ 181 (182)
+++++|.+.+.+.+
T Consensus 172 ~l~~~l~~~~~~~~ 185 (190)
T 3con_A 172 DAFYTLVREIRQYR 185 (190)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
No 69
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.98 E-value=3.3e-32 Score=183.65 Aligned_cols=163 Identities=12% Similarity=0.086 Sum_probs=123.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCc-ccccccc--eeEEEEEEcC--eEEEEEEcCCCCCCcc-hhhhccCCCCe
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV-STIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRP-YWRCYFPNTQA 87 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~-~~~~~~~~~d~ 87 (182)
..+.++|+++|++|+|||||++++.+.... ...++.+ .....+.+++ ..+.+|||+|++.+.. ++..+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 357799999999999999999999754432 2333333 3344445544 5788999999988765 77778889999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
+|+|+|+++++++..+..|+..+.......+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~Sa~~~~~ 174 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-----GTLSCKHIETSAALHHN 174 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHH-----HHhCCEEEEEcCCCCCC
Confidence 99999999999999999999887665444579999999999996432 223332221 12246799999999999
Q ss_pred hHHHHHHHHHHHhhcC
Q 030149 166 LFEGLDWLSNTLKSIG 181 (182)
Q Consensus 166 i~~l~~~l~~~~~~~~ 181 (182)
++++|+.+.+.+.+.+
T Consensus 175 v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 175 TRELFEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887653
No 70
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.98 E-value=1.5e-31 Score=180.93 Aligned_cols=164 Identities=21% Similarity=0.327 Sum_probs=117.5
Q ss_pred hhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCC
Q 030149 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (182)
+....+.++|+++|++|+|||||++++.+..+.. +.+|.+.. ...+.+++ ..+.+|||||++.+...+..+++.+
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 101 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA 101 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence 3445678999999999999999999999888754 56666633 34444543 6799999999999999999999999
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC--------CCCHHHHHHHhccccccCCccEEEE
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG--------ALDDAAVTEALELHKIKNRQWAIFK 157 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
|++|+|+|++++.++.....|+..+... ...+.|+++|+||+|+.. ....++.. .+. ...++++++
T Consensus 102 d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~-~~~----~~~~~~~~~ 175 (199)
T 2p5s_A 102 DGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGE-KLA----MTYGALFCE 175 (199)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHH-HHH----HHHTCEEEE
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHH-HHH----HHcCCeEEE
Confidence 9999999999999999888877766443 335789999999999852 11112221 111 223567999
Q ss_pred ecccCCCChHHHHHHHHHHHhhc
Q 030149 158 TSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
+||++|.|++++|++|.+.+.++
T Consensus 176 ~SA~~g~gv~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 176 TSAKDGSNIVEAVLHLAREVKKR 198 (199)
T ss_dssp CCTTTCTTHHHHHHHHHHHHTC-
T ss_pred eeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999988653
No 71
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.98 E-value=2.9e-32 Score=181.25 Aligned_cols=160 Identities=19% Similarity=0.332 Sum_probs=126.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.++.+.. ...+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999887765 56666643 34444544 68999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.++. ..++..... ...+++++++||++|.|++
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 165 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKA-----KELNVMFIETSAKAGYNVK 165 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEEEBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999998888888776543 3579999999999986432 223322222 1234679999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
+++++|.+.+.+.
T Consensus 166 ~l~~~l~~~~~~~ 178 (179)
T 2y8e_A 166 QLFRRVAAALPGM 178 (179)
T ss_dssp HHHHHHHHTCC--
T ss_pred HHHHHHHHHHhhc
Confidence 9999999877553
No 72
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.98 E-value=1.1e-31 Score=184.06 Aligned_cols=162 Identities=20% Similarity=0.240 Sum_probs=127.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE--c--C-eEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY--N--N-IKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~--~--~-~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
....++|+++|++|+|||||++++.++.+.. +.+|.+........ . . ..+.+|||||++.+...+..+++.+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 3577999999999999999999999887765 66777766555544 1 1 789999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC-CHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL-DDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
+|+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+.. ...+.... .....+++++++||++|.|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~g~gv 162 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAV-VGNEAPIVVCANKIDIKNRQKISKKLVME----VLKGKNYEYFEISAKTAHNF 162 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-HCSSSCEEEEEECTTCC----CCHHHHHH----HTTTCCCEEEEEBTTTTBTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHH----HHHHcCCcEEEEecCCCCCH
Confidence 99999999999999888887777554 33568999999999997531 11222222 22345678999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030149 167 FEGLDWLSNTLKSI 180 (182)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (182)
+++|++|.+.+.+.
T Consensus 163 ~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 163 GLPFLHLARIFTGR 176 (218)
T ss_dssp THHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998764
No 73
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.98 E-value=6e-32 Score=181.26 Aligned_cols=161 Identities=16% Similarity=0.174 Sum_probs=121.6
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.+.+.++|+++|++|+|||||++++.++.+.. +.+|.+... ..+.. ....+.+|||||++.+..+ ..+++.+|++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 34677999999999999999999999888765 667777443 22333 3467899999999988775 5688999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcc--cCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecc-cCC
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEE--LRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSA-IKG 163 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~-~~~ 163 (182)
++|+|+++++++..+..|+..+..... ..+.|+++|+||+|+.+. ...++..+... ..+++++++|| ++|
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~g 170 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG-----RFGCLFFEVSACLDF 170 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECCSSSCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH-----HcCCcEEEEeecCcc
Confidence 999999999999999988888765532 257999999999999642 22233322222 22467999999 899
Q ss_pred CChHHHHHHHHHHHhh
Q 030149 164 EGLFEGLDWLSNTLKS 179 (182)
Q Consensus 164 ~gi~~l~~~l~~~~~~ 179 (182)
.|++++|+.|.+.+.+
T Consensus 171 ~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 171 EHVQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhh
Confidence 9999999999988754
No 74
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=3.8e-31 Score=180.85 Aligned_cols=163 Identities=23% Similarity=0.321 Sum_probs=121.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEc---CeEEEEEEcCCCCCCcc-hhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYN---NIKFQVWDLGGQTSIRP-YWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.++.+....++.......+.++ ...+.+|||||++.+.. ++..+++.+|++|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~ 84 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVF 84 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEE
Confidence 567999999999999999999999988877556666666566665 68899999999998887 78888999999999
Q ss_pred EEeCCCcc-hHHHHHHHHHHHHhh--cccCCCeEEEEeecCCCCCCCCHHHHHHHhccc---------------------
Q 030149 91 VVDSSDTE-RLVIAKDEFHAILEE--EELRGAVVLIFANKQDLPGALDDAAVTEALELH--------------------- 146 (182)
Q Consensus 91 v~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~--------------------- 146 (182)
|+|+++.. ++.....++...+.. ....+.|+++|+||+|+......+...+.+...
T Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~ 164 (214)
T 2fh5_B 85 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTA 164 (214)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------
T ss_pred EEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccc
Confidence 99998853 455666666665443 223578999999999998765554443332210
Q ss_pred --ccc---------C--CccEEEEecccCC------CChHHHHHHHHHHH
Q 030149 147 --KIK---------N--RQWAIFKTSAIKG------EGLFEGLDWLSNTL 177 (182)
Q Consensus 147 --~~~---------~--~~~~~~~~S~~~~------~gi~~l~~~l~~~~ 177 (182)
... . ..++|++|||++| .|++++|++|.+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 165 PAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred cccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 000 1 1678999999999 99999999998753
No 75
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-31 Score=183.57 Aligned_cols=160 Identities=23% Similarity=0.313 Sum_probs=122.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce--eEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...++|+|+|++|+|||||++++.+..+.. +.+|.+. ....+.+.+ ..+.+|||||++.+..++..+++.+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 567999999999999999999999988765 5566663 344455555 68999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+... ...++..... ...+++++++||++|+|++
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFA-----QENQLLFTETSALNSENVD 164 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCCC-CCCHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999999888888775543 357899999999999642 2223332222 2235689999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|++|.+.+.+.
T Consensus 165 ~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 165 KAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
No 76
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.1e-32 Score=185.48 Aligned_cols=160 Identities=21% Similarity=0.352 Sum_probs=127.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.+||+|+|++|+|||||++++.+..+.. +.++.+.. ...+.. ....+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 467999999999999999999999887655 55555533 333333 5688999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++++++.+..|+..+... ...+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLA-----EQLGFDFFEASAKENISVR 174 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEECCCCCCHH
Confidence 999999999999888887777553 3468999999999998643 2222222221 2234679999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|++|.+.+.+.
T Consensus 175 ~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 175 QAFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 77
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.97 E-value=6.8e-31 Score=176.80 Aligned_cols=161 Identities=19% Similarity=0.268 Sum_probs=122.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+.. ...+.+.+ ..+.+|||||++.+...+..+++.+|++|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999888765 56666643 44455544 68999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++..+..|+..+.. ....+.|+++|+||+|+.+.. ..++..+ +.. ...+.+++++||++|.|++
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~-~~~~~~piilV~NK~Dl~~~~~v~~~~~~~-~~~---~~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDK-YASEDAELLLVGNKLDCETDREITRQQGEK-FAQ---QITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHH-HHH---TSTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECcccccccccCHHHHHH-HHH---hcCCCeEEEEeCCCCCCHH
Confidence 99999999999988877666543 344579999999999996432 2233222 221 1235789999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|++|.+.+.+.
T Consensus 179 ~l~~~l~~~i~~~ 191 (192)
T 2il1_A 179 EIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988653
No 78
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.3e-30 Score=173.65 Aligned_cols=157 Identities=16% Similarity=0.136 Sum_probs=122.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+... ..+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 467999999999999999999999887765 566665433 2344444 789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCC--------------CHHHHHHHhccccccCCcc-E
Q 030149 91 VVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGAL--------------DDAAVTEALELHKIKNRQW-A 154 (182)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~-~ 154 (182)
|+|+++++++.... .|+..+.... ++.|+++|+||+|+.... ..++..+.. ...+. +
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~ 168 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA-----KEIGACC 168 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH-----HHHTCSC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHH-----HHcCCcE
Confidence 99999999999887 5666655432 479999999999997531 111111111 11123 6
Q ss_pred EEEecccCCCChHHHHHHHHHHHh
Q 030149 155 IFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 155 ~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
++++||++|+|++++|++|.+.+.
T Consensus 169 ~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 169 YVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999998874
No 79
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.7e-32 Score=179.03 Aligned_cols=160 Identities=21% Similarity=0.261 Sum_probs=123.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE-EEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.++|+++|++|+|||||++++.++.+.. +.+|.+..... +.. ....+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 46899999999999999999999887754 56666644332 233 336789999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhc-ccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEE-ELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
+|++++.+++....|+..+.... ...+.|+++|+||+|+..... ..+... +. ...+++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA-LA----RTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH-HH----HHHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHH-HH----HHhCCeEEEecCCCCcCHHH
Confidence 99999999988888877765542 224789999999999864322 222221 11 12246799999999999999
Q ss_pred HHHHHHHHHhhc
Q 030149 169 GLDWLSNTLKSI 180 (182)
Q Consensus 169 l~~~l~~~~~~~ 180 (182)
++++|.+.+.+.
T Consensus 157 l~~~l~~~~~~~ 168 (172)
T 2erx_A 157 LFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhhh
Confidence 999999877654
No 80
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=3.8e-31 Score=179.24 Aligned_cols=165 Identities=15% Similarity=0.224 Sum_probs=122.6
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
+....++|+++|++|+|||||++++.+..+.. +.+|.+... ..+...+ ..+.+|||||++.+...+..+++.+|++
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 44678999999999999999999999888765 566665433 3344444 5899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHh---------ccccccCCcc-EEEE
Q 030149 89 IYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEAL---------ELHKIKNRQW-AIFK 157 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~ 157 (182)
++|+|+++++++.... .|+..+ .... ++.|+++|+||+|+.+.....+..... ........+. ++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEV-KHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE 178 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHH-HHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHH-HHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence 9999999999999885 444444 3322 479999999999997542111111000 0001111233 7999
Q ss_pred ecccCCCChHHHHHHHHHHHhh
Q 030149 158 TSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
+||++|.|+++++++|.+.+.+
T Consensus 179 ~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 179 CSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred eeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999988754
No 81
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.97 E-value=7e-32 Score=182.75 Aligned_cols=159 Identities=23% Similarity=0.325 Sum_probs=120.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc--eeEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+|+|++|+|||||++++.+..+.. +.+|.+ .....+...+ ..+.+|||||++.+...+..+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 567999999999999999999999888765 556655 3344455554 78999999999888888889999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+... ....+..... ...+++++++||++|.|++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFA-----QENELMFLETSALTGENVE 176 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999999888888775543 367999999999999642 2223332222 2345689999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
++|++|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (200)
T 2o52_A 177 EAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 82
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.8e-30 Score=175.69 Aligned_cols=165 Identities=18% Similarity=0.225 Sum_probs=119.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..+.++|+++|++|+|||||++++.+..+.. +.+|.+... ..+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 3677999999999999999999999888765 556665433 2344444 68999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcc---------ccccCCcc-EEEEe
Q 030149 90 YVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALEL---------HKIKNRQW-AIFKT 158 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~ 158 (182)
+|+|+++++++.... .|+..+... .++.|+++|+||+|+.+.....+....... ......+. +++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 999999999998884 455444332 247999999999999654211111111100 00111223 79999
Q ss_pred cccCCCChHHHHHHHHHHHhhc
Q 030149 159 SAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
||++|.|+++++++|.+.+.+.
T Consensus 180 SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHHHSC
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999987643
No 83
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=3.4e-31 Score=179.91 Aligned_cols=164 Identities=16% Similarity=0.229 Sum_probs=118.6
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee-EEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
....+.++|+++|++|+|||||++++..+.+.. +.+|.+.. ...+..+ ...+.+|||||++.+...+..+++.+|+
T Consensus 25 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp -----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred hhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 445788999999999999999999999887765 55555432 2223333 4566799999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhc---------cccc-cCCccEEE
Q 030149 88 IIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALE---------LHKI-KNRQWAIF 156 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~---------~~~~-~~~~~~~~ 156 (182)
+++|+|++++.++.... .|+..+... . .+.|+++|+||+|+.+.....+...... .... .....+++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH-C-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEE
Confidence 99999999999999987 455554433 2 5799999999999875422111111100 0011 11234699
Q ss_pred EecccCCCChHHHHHHHHHHH
Q 030149 157 KTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 157 ~~S~~~~~gi~~l~~~l~~~~ 177 (182)
++||++|+|++++|++|.+.+
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 183 ECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp ECCTTTCTTHHHHHHHHHHTT
T ss_pred EeeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998754
No 84
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.97 E-value=3.5e-32 Score=186.32 Aligned_cols=160 Identities=23% Similarity=0.417 Sum_probs=126.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc------------CeEEEEEEcCCCCCCcchhh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN------------NIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~------------~~~~~~~D~~g~~~~~~~~~ 79 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+... ..+.+. ...+.+|||||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 567999999999999999999999887755 566666433 334443 57899999999999888999
Q ss_pred hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEE
Q 030149 80 CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
.+++.+|++|+|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ..++..+.. ...++++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~ 177 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-----DKYGIPYFE 177 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH-----HHCCCcEEE
Confidence 9999999999999999999999888887766554433679999999999996432 223322222 123467999
Q ss_pred ecccCCCChHHHHHHHHHHHhh
Q 030149 158 TSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
+||++|.|+++++++|.+.+.+
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988765
No 85
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.2e-31 Score=180.46 Aligned_cols=161 Identities=14% Similarity=0.108 Sum_probs=119.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC--Ccccccccce--eEEEEEEcC--eEEEEEEcCCCCC-CcchhhhccCCCCe
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE--VVSTIPTIGF--NVETVQYNN--IKFQVWDLGGQTS-IRPYWRCYFPNTQA 87 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~--~~~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~d~ 87 (182)
.+.++|+++|++|+|||||++++.+.. +....++.+. ....+.+++ ..+.+|||+|++. ...+...+++.+|+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 566999999999999999999998644 3343344443 334455554 4678999999876 45566777889999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
+|+|+|++++++|+....|+..+.......+.|+++|+||+|+.+. ...++. ..+. ...+++++++||++|+|
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~-~~~a----~~~~~~~~e~SAk~g~~ 189 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG-RACA----VVFDCKFIETSAAVQHN 189 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH-HHHH----HHHTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHH-HHHH----HHcCCEEEEEeCCCCCC
Confidence 9999999999999999888877765434457999999999999642 222221 1111 22346799999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 030149 166 LFEGLDWLSNTLKSI 180 (182)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (182)
++++|+.|.+.+...
T Consensus 190 v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 190 VKELFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987543
No 86
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.7e-31 Score=177.91 Aligned_cols=162 Identities=20% Similarity=0.232 Sum_probs=125.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE-EEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.++.+.. +.+|.+..... +.. ....+.+|||||++.+...+..+++.+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 567999999999999999999999887765 56666644332 223 34589999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcc-cCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEE-LRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
|+|++++.++.....|+..+..... ..+.|+++|+||+|+.+.....+....+. ...+++++++||++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l 161 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVA----QEWKCAFMETSAKMNYNVKEL 161 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHH----HHHTCEEEECBTTTTBSHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHH----HHhCCeEEEEecCCCCCHHHH
Confidence 9999999999888877766654322 24689999999999975322222222221 122457999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
+++|.+.+...
T Consensus 162 ~~~l~~~~~~~ 172 (199)
T 2gf0_A 162 FQELLTLETRR 172 (199)
T ss_dssp HHHHHHHCSSS
T ss_pred HHHHHHHHhhh
Confidence 99999887543
No 87
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=2.3e-30 Score=173.12 Aligned_cols=159 Identities=19% Similarity=0.219 Sum_probs=121.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.+..+.. +.||.+.... .+.. ....+.+|||||++.+...+..+++.+|++++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 567999999999999999999999888765 6677664432 2333 34689999999999999999999999999999
Q ss_pred EEeCCCcchHHHH-HHHHHHHHhhcccCCCeEEEEeecCCCCCC--------------CCHHHHHHHhccccccCCccEE
Q 030149 91 VVDSSDTERLVIA-KDEFHAILEEEELRGAVVLIFANKQDLPGA--------------LDDAAVTEALELHKIKNRQWAI 155 (182)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
|+|+++++++... ..|+..+... .++.|+++|+||+|+.+. ...++..+... .....++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~ 158 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK----QIGAATY 158 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH----HHTCSEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHH----HcCCcEE
Confidence 9999999999988 4565555433 257999999999999642 11222211111 1123579
Q ss_pred EEeccc-CCCChHHHHHHHHHHHhh
Q 030149 156 FKTSAI-KGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 156 ~~~S~~-~~~gi~~l~~~l~~~~~~ 179 (182)
+++||+ ++.|++++|+.+.+.+.+
T Consensus 159 ~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 159 IECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEeeecCCCcCHHHHHHHHHHHHhc
Confidence 999999 689999999999988754
No 88
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=2.3e-31 Score=182.80 Aligned_cols=161 Identities=20% Similarity=0.305 Sum_probs=129.7
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
.+.+.++|+++|++|+|||||+++++.+.+.. +.+|.+.+.....+ ....+.+|||||++.+...+..+++.+|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 44678999999999999999999977665544 67777766554443 45789999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+++|+|++++.++.....|+..+.... .+.|+++|+||+|+.+.....+ ........+++++++||++|.|++
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAK-----SIVFHRKKNLQYYDISAKSNYNFE 163 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGG-----GCCHHHHHTCEEEECBGGGTBTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHH-----HHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999988888887653 4789999999999975432221 111223345689999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|++|.+.+...
T Consensus 164 ~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 164 KPFLWLARKLIGD 176 (221)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988654
No 89
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=7.9e-31 Score=175.33 Aligned_cols=164 Identities=17% Similarity=0.212 Sum_probs=121.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
++.++|+++|++|+|||||++++.++.+.. +.+|.+... ..+... ...+.+|||||++.+...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 567999999999999999999999887765 556665332 233444 3567799999999999999999999999999
Q ss_pred EEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHH---------hccccccCCc-cEEEEec
Q 030149 91 VVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEA---------LELHKIKNRQ-WAIFKTS 159 (182)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~S 159 (182)
|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+.... .........+ .+++++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99999999999887 4555554432 37999999999998653211111000 0000111123 3799999
Q ss_pred ccCCCChHHHHHHHHHHHhhc
Q 030149 160 AIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~~~ 180 (182)
|++|.|++++++.+.+.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCC
T ss_pred CCCccCHHHHHHHHHHHHhcc
Confidence 999999999999999988653
No 90
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=4.8e-31 Score=180.39 Aligned_cols=165 Identities=14% Similarity=0.199 Sum_probs=105.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..+.++|+++|++|+|||||++++.++.+.. +.+|.+... ..+... ...+.+|||||++.+...+..+++.+|+++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 3577999999999999999999999887755 556655332 233443 357999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHH---------hccccccCCcc-EEEEe
Q 030149 90 YVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEA---------LELHKIKNRQW-AIFKT 158 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~ 158 (182)
+|+|+++++++..+. .|+..+.... .+.|+++|+||+|+.......+..+. .........+. +++++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 999999999999887 4555554332 57899999999999754211111100 00111112233 79999
Q ss_pred cccCCCChHHHHHHHHHHHhhc
Q 030149 159 SAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
||++|.|++++|+.|.+.+.+.
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988764
No 91
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=1.7e-31 Score=178.03 Aligned_cols=158 Identities=16% Similarity=0.167 Sum_probs=110.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE---EEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE---TVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..+.++|+++|++|+|||||++++.++.+.. +.+|.+.... .+......+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 4678999999999999999999999887655 5555542221 12224566789999999999999999999999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCCC------------HHHHHHHhccccccCCc-cEE
Q 030149 90 YVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGALD------------DAAVTEALELHKIKNRQ-WAI 155 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~-~~~ 155 (182)
+|+|+++++++.... .|+..+.... .+.|+++|+||+|+.+... .++..+ +. ...+ .++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~-~~----~~~~~~~~ 157 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE-LK----KLIGAPAY 157 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH-HH----HHHTCSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH-HH----HHcCCCEE
Confidence 999999999999887 4555554332 4799999999999864321 111111 11 1123 379
Q ss_pred EEecccCCCChHHHHHHHHHHHh
Q 030149 156 FKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 156 ~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+++||++|+|++++|+.|.+.+.
T Consensus 158 ~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 158 IECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999998764
No 92
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.97 E-value=3.4e-31 Score=180.12 Aligned_cols=160 Identities=19% Similarity=0.217 Sum_probs=96.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--CCcc-cccccc--eeEEEEEEc----CeEEEEEEcCCCCCCcchhhhccCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG--EVVS-TIPTIG--FNVETVQYN----NIKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~--~~~~-~~~t~~--~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (182)
.+.++|+++|++|+|||||++++.+. .+.. +.+|.+ .....+.+. ...+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 56789999999999999999999988 6554 666766 444455555 56899999999999999999999999
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhhcc--cCCCeEEEEeecCCCCC-C--CCHHHHHHHhccccccCCccEEEEecc
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEEEE--LRGAVVLIFANKQDLPG-A--LDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
|++|+|+|++++.+++....|+..+..... ..+.|+++|+||+|+.+ . ...++..+... ..+++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT-----TNTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH-----HTTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH-----HcCCEEEEecc
Confidence 999999999999999999988888766533 25799999999999975 2 22233333222 23468999999
Q ss_pred cC-CCChHHHHHHHHHHHhh
Q 030149 161 IK-GEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 161 ~~-~~gi~~l~~~l~~~~~~ 179 (182)
++ |.|++++|++|.+.+.+
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99 99999999999988764
No 93
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=2.3e-30 Score=176.74 Aligned_cols=159 Identities=14% Similarity=0.133 Sum_probs=122.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.++.+.. +.||.+.... .+..+ ...+.+|||||++.+..++..+++.+|++|+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 577999999999999999999999888755 6667664332 33343 3689999999999999999999999999999
Q ss_pred EEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCC----------CHHHHHHHhccccccCCc-cEEEEe
Q 030149 91 VVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGAL----------DDAAVTEALELHKIKNRQ-WAIFKT 158 (182)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~ 158 (182)
|+|+++++++.... .|+..+.... ++.|+++|+||+|+.+.. ..++..+.. ...+ .+++++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~ 159 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELR-----KQIGAAAYIEC 159 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHH-----HHHTCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHH-----HHcCCceEEEc
Confidence 99999999999887 5665554432 479999999999986531 112222111 1122 479999
Q ss_pred cccCCCChHHHHHHHHHHHhhc
Q 030149 159 SAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
||++|+|++++|++|.+.+.+.
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 160 SSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp CTTTCTTHHHHHHHHHHHHHCC
T ss_pred cCCCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999988654
No 94
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.97 E-value=6.7e-30 Score=173.01 Aligned_cols=162 Identities=16% Similarity=0.167 Sum_probs=117.4
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
...+.++|+++|++|+|||||++++.+..+.. +.+|.+... ..+..++ ..+.+|||||++.+..++..+++++|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 34678999999999999999999999888655 566666433 2344444 5778999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCC--------------CCHHHHHHHhccccccCCcc
Q 030149 89 IYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGA--------------LDDAAVTEALELHKIKNRQW 153 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~ 153 (182)
++|+|+++++++.... .|+..+.... .+.|+++|+||+|+... ...++...... .....
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~ 169 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAE----EIKAA 169 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH----HHTCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHH----hcCCc
Confidence 9999999999999887 5666554432 47999999999998642 11111111111 11123
Q ss_pred EEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 154 AIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 154 ~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
+++++||++|.|++++|++|.+.+.+.
T Consensus 170 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 170 SYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 799999999999999999999887653
No 95
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.97 E-value=6.5e-30 Score=169.79 Aligned_cols=162 Identities=20% Similarity=0.172 Sum_probs=122.1
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+.++|+++|++|+|||||++++.+..+.. +.+ +.......+.+.+..+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 45788999999999999999999999887765 333 334555667778899999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccc--ccCC--ccEEEEecccCCCC
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHK--IKNR--QWAIFKTSAIKGEG 165 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~S~~~~~g 165 (182)
+|+|++++..... ...+... ...+.|+++|+||+|+... ..+++...+.... .... ..+++++||++|.|
T Consensus 84 ~v~d~~~~~~~~~-~~~l~~~----~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 84 LVVAADDGVMPQT-VEAINHA----KAANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEETTCCCCHHH-HHHHHHH----GGGSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEECCCCCcHHH-HHHHHHH----HhCCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 9999987532221 1222222 2357899999999999764 3344444333221 1111 26899999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 030149 166 LFEGLDWLSNTLKSI 180 (182)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (182)
+++++++|.+.+...
T Consensus 158 v~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 158 LDHLLEMILLVSEME 172 (178)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999999987764
No 96
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=6.6e-30 Score=173.61 Aligned_cols=159 Identities=19% Similarity=0.216 Sum_probs=121.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+.... .+.+ ....+.+|||||++.+...+..+++.+|++|+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 567999999999999999999999988765 5667664432 2333 34789999999999999999999999999999
Q ss_pred EEeCCCcchHHHH-HHHHHHHHhhcccCCCeEEEEeecCCCCCC--------------CCHHHHHHHhccccccCCccEE
Q 030149 91 VVDSSDTERLVIA-KDEFHAILEEEELRGAVVLIFANKQDLPGA--------------LDDAAVTEALELHKIKNRQWAI 155 (182)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
|+|+++++++..+ ..|+..+.... ++.|+++|+||+|+... ...++..+... .....++
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~ 179 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK----QIGAATY 179 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH----HHTCSEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHH----HcCCCEE
Confidence 9999999999988 45666554432 47999999999999642 11122211111 1113579
Q ss_pred EEeccc-CCCChHHHHHHHHHHHhh
Q 030149 156 FKTSAI-KGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 156 ~~~S~~-~~~gi~~l~~~l~~~~~~ 179 (182)
+++||+ ++.|++++|+.+.+.+.+
T Consensus 180 ~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 180 IECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeeeccCCcCHHHHHHHHHHHHhh
Confidence 999999 689999999999988754
No 97
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=1.2e-30 Score=176.16 Aligned_cols=163 Identities=20% Similarity=0.261 Sum_probs=114.6
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCccccccccee--EEEEE---EcCeEEEEEEcCCCCCCcchh---hhccC
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN--VETVQ---YNNIKFQVWDLGGQTSIRPYW---RCYFP 83 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~--~~~~~---~~~~~~~~~D~~g~~~~~~~~---~~~~~ 83 (182)
..+.+.+||+++|++|+|||||++++.+........+.+.. ..... .....+.+|||||++.+.... ..+++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 34578899999999999999999988775433322222222 22222 245899999999999987776 78899
Q ss_pred CCCeEEEEEeCCCc--chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC----HHHHHHHhcccccc----CCcc
Q 030149 84 NTQAIIYVVDSSDT--ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD----DAAVTEALELHKIK----NRQW 153 (182)
Q Consensus 84 ~~d~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~----~~~~~~~~~~~~~~----~~~~ 153 (182)
.+|++|+|+|++++ +++.....|+..... ...+.|+++|+||+|+..+.. ...+.......... ..++
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHL 172 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCc
Confidence 99999999999987 566666666666532 235899999999999875311 12232222222222 5678
Q ss_pred EEEEecccCCCChHHHHHHHHHHH
Q 030149 154 AIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 154 ~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
+|+++||++ .|++++|+.+.+.+
T Consensus 173 ~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 173 SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEECTTS-THHHHHHHHHHHHT
T ss_pred ceEEEEech-hhHHHHHHHHHHHh
Confidence 899999999 99999999998865
No 98
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=2.5e-32 Score=184.76 Aligned_cols=163 Identities=23% Similarity=0.312 Sum_probs=120.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc--eeEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.++.+ .....+.+++ ..+.+|||||++.+...+..+++.+|++|
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 467999999999999999999999887765 455544 4455556655 67999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+....... ...........+++++++||++|.|++++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~---~~~~~~~~~~~~~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVD---YTTAKEFADSLGIPFLETSAKNATNVEQS 186 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCC---SCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCC---HHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 999999999999998888777543 33579999999999996432110 00111112233567999999999999999
Q ss_pred HHHHHHHHhhcC
Q 030149 170 LDWLSNTLKSIG 181 (182)
Q Consensus 170 ~~~l~~~~~~~~ 181 (182)
|++|.+.+.++.
T Consensus 187 ~~~l~~~l~~~~ 198 (199)
T 3l0i_B 187 FMTMAAEIKKRM 198 (199)
T ss_dssp HHHHTTTTTTTC
T ss_pred HHHHHHHHHHhc
Confidence 999998887654
No 99
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=3.6e-30 Score=173.24 Aligned_cols=160 Identities=14% Similarity=0.101 Sum_probs=115.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC--Ccccccccc--eeEEEEEEcC--eEEEEEEcCCCCC-CcchhhhccCCCCe
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE--VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS-IRPYWRCYFPNTQA 87 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~--~~~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~d~ 87 (182)
.+.++|+++|++|+|||||++++.+.. +....++.+ .....+.+++ ..+.+|||+|.+. ...+...+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 567999999999999999999998633 334333344 2334455554 4668899999876 45566777888999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
+++|+|++++++|.....|+..+.......+.|+++|+||+|+.+. ...++. ..+ ....+++++++||++|.|
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~-~~~----a~~~~~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEG-RAX----AVVFDXKFIETSAAVQHN 158 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHH-HHH----HHHTTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHH-HHH----HHHhCCceEEeccccCCC
Confidence 9999999999999999888877765433457899999999998632 122211 111 122345799999999999
Q ss_pred hHHHHHHHHHHHhh
Q 030149 166 LFEGLDWLSNTLKS 179 (182)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (182)
++++|+.+.+.+..
T Consensus 159 v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 159 VKELFEGIVRQVRL 172 (192)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988753
No 100
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=1.9e-30 Score=173.56 Aligned_cols=162 Identities=16% Similarity=0.253 Sum_probs=116.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC--CCcc-cccccceeEEEEEE-------cCeEEEEEEcCCCCCCcchhhhccCCCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG--EVVS-TIPTIGFNVETVQY-------NNIKFQVWDLGGQTSIRPYWRCYFPNTQ 86 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~--~~~~-~~~t~~~~~~~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (182)
.++|+++|++|+|||||++++.+. .+.. +.+|.+........ ....+.+|||+|++.+..++..+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999985 3433 67777766544432 4678999999999888888888888999
Q ss_pred eEEEEEeCCCc-chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccE----EEEeccc
Q 030149 87 AIIYVVDSSDT-ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWA----IFKTSAI 161 (182)
Q Consensus 87 ~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~S~~ 161 (182)
++++|+|++++ .++..+..|+..+.... ++.|+++|+||+|+.+...................+++ ++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999987 47888888888775542 47899999999999643211111111122222233343 9999999
Q ss_pred CCC-ChHHHHHHHHHHHhhc
Q 030149 162 KGE-GLFEGLDWLSNTLKSI 180 (182)
Q Consensus 162 ~~~-gi~~l~~~l~~~~~~~ 180 (182)
+|. |++++++.+.+.+.+.
T Consensus 160 ~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 160 EESDALAKLRKTIINESLNF 179 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHCC
T ss_pred cCchhHHHHHHHHHHHHhcc
Confidence 997 9999999999888754
No 101
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.96 E-value=1.6e-29 Score=170.27 Aligned_cols=161 Identities=15% Similarity=0.115 Sum_probs=108.3
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEEcCeEEEEEEcCC----------CCCCcchh
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYNNIKFQVWDLGG----------QTSIRPYW 78 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~~~~~~~~D~~g----------~~~~~~~~ 78 (182)
....+.++|+++|++|+|||||++++.+..+.. +.++.+.+.. .... +..+.+||||| ++.+...+
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 344678999999999999999999999887433 4554443322 2222 34799999999 44455556
Q ss_pred hhccCCC---CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEE
Q 030149 79 RCYFPNT---QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAI 155 (182)
Q Consensus 79 ~~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
..+++.+ |++++|+|++++.++.... +...+. ..+.|+++|+||+|+.+........+............++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~---~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLK---YYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHH---HTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHH---HcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence 6666555 9999999998877665432 122222 2578999999999997654443333333322223456789
Q ss_pred EEecccCCCChHHHHHHHHHHHh
Q 030149 156 FKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 156 ~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+++||++|.|+++++++|.+.+.
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEEccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999998775
No 102
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=8.7e-29 Score=170.73 Aligned_cols=163 Identities=18% Similarity=0.152 Sum_probs=112.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCeEEEEEEcCCCCCC---------cchhhhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSI---------RPYWRCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~ 82 (182)
.+.++|+|+|++|+|||||++++.+..+.. ..+ |.......+...+..+.+|||||+... ...+..++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 578999999999999999999999887653 222 444555666668899999999998421 11223446
Q ss_pred CCCCeEEEEEeCCCcchHHH--HHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHH-HHHHHhccccccCCc--cEEEE
Q 030149 83 PNTQAIIYVVDSSDTERLVI--AKDEFHAILEEEELRGAVVLIFANKQDLPGALDDA-AVTEALELHKIKNRQ--WAIFK 157 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~--~~~~~ 157 (182)
..+|++|+|+|++++.++.. ...++..+... ..+.|+++|+||+|+.+..... +...... ......+ +++++
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIK-QILDNVKNPIKFSS 183 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHH-HHHHHCCSCEEEEE
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHH-HHHHhcCCCceEEE
Confidence 78899999999999877652 22344444322 2378999999999997543221 1111111 1111222 68999
Q ss_pred ecccCCCChHHHHHHHHHHHhhc
Q 030149 158 TSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
+||++|.|++++|++|.+.+.+.
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988653
No 103
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=1.4e-31 Score=181.82 Aligned_cols=164 Identities=18% Similarity=0.241 Sum_probs=120.9
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEE--EcCeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQ--YNNIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
++..+.++|+++|++|+|||||++++.++.+.. +.+|.+... ..+. .....+.+|||||++.+...+..+++.+|+
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 445788999999999999999999999877655 455554222 1222 245677899999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCCCHH---------HHHHHhccccccCCcc-EEE
Q 030149 88 IIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGALDDA---------AVTEALELHKIKNRQW-AIF 156 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~-~~~ 156 (182)
+++|+|++++.++.... .|+..+... . .+.|+++|+||+|+.+..... .+............+. +++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~-~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
Confidence 99999999999998887 454444332 2 378999999999996532111 1111111222233344 799
Q ss_pred EecccCCCChHHHHHHHHHHH
Q 030149 157 KTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 157 ~~S~~~~~gi~~l~~~l~~~~ 177 (182)
++||++|.|++++++.|.+.+
T Consensus 183 ~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 183 ECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999999998764
No 104
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.96 E-value=4e-29 Score=168.23 Aligned_cols=163 Identities=23% Similarity=0.203 Sum_probs=113.3
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEE-EEcCeEEEEEEcCC----------CCCCcchhhh
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETV-QYNNIKFQVWDLGG----------QTSIRPYWRC 80 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~D~~g----------~~~~~~~~~~ 80 (182)
......++|+++|++|+|||||++++.+.......++.+.+.... ...+.++.+||||| ++.+...+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 344677899999999999999999999988666666555333222 22456789999999 3344445555
Q ss_pred ccCCC---CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEE
Q 030149 81 YFPNT---QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFK 157 (182)
Q Consensus 81 ~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
+++.+ |++++|+|+++..+.... .+...+.. .+.|+++|+||+|+..+.......+...........+++++
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIP 172 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEE
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEE
Confidence 55544 999999999776443322 11122222 37899999999999765444444444333222334567999
Q ss_pred ecccCCCChHHHHHHHHHHHhh
Q 030149 158 TSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
+||++|+|+++++++|.+.+.+
T Consensus 173 ~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 173 TSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHC-
T ss_pred EecCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999998764
No 105
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.96 E-value=8.7e-29 Score=176.29 Aligned_cols=156 Identities=19% Similarity=0.202 Sum_probs=116.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc----cccccceeEEEEEEcCeEEEEEEcCCCCCCcc---hhhhccCCCCeEEEE
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---YWRCYFPNTQAIIYV 91 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~d~ii~v 91 (182)
||+++|+.|+|||||++++.++.... +.||++.....+. ...++++|||+|++++.. .+..++++++++|+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999887654432 5678887776653 458999999999999975 468899999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhh--cccCCCeEEEEeecCCCCCCCCH----HHHHHHhccccccC----CccEEEEeccc
Q 030149 92 VDSSDTERLVIAKDEFHAILEE--EELRGAVVLIFANKQDLPGALDD----AAVTEALELHKIKN----RQWAIFKTSAI 161 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~iivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~S~~ 161 (182)
+|++++ +.....||...+.. ...++.|+++++||+|+..+... +++....+...++. .+++|+++||+
T Consensus 80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999987 44444455443322 12357999999999999754321 34444444444443 57899999999
Q ss_pred CCCChHHHHHHHHHHHh
Q 030149 162 KGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~~ 178 (182)
+ .+|.++|..+.+.+.
T Consensus 158 d-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp S-SHHHHHHHHHHTTSS
T ss_pred C-CcHHHHHHHHHHHHH
Confidence 8 589999998877553
No 106
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.96 E-value=2.4e-28 Score=161.66 Aligned_cols=153 Identities=18% Similarity=0.231 Sum_probs=111.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcch--------hhhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 82 (182)
.+..+|+++|++|+|||||++++.+..... ..+ |.+.....+.+++..+.+|||||+...... ...++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 356799999999999999999999876432 222 334555667778888999999998764321 12357
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
+.+|++++|+|++++.++.. ..|+..+... ...+.|+++|+||+|+.+... ......+.+++++||++
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~SA~~ 149 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIAR-LPAKLPITVVRNKADITGETL----------GMSEVNGHALIRLSART 149 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HHHCHHHHHH-SCTTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTT
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHh-cccCCCEEEEEECccCCcchh----------hhhhccCCceEEEeCCC
Confidence 89999999999999888763 4566555443 235789999999999853211 11222456899999999
Q ss_pred CCChHHHHHHHHHHHhh
Q 030149 163 GEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~~ 179 (182)
|.|++++|+.|.+.+..
T Consensus 150 g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp CTTHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHhhh
Confidence 99999999999887654
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.96 E-value=2.5e-28 Score=175.10 Aligned_cols=161 Identities=19% Similarity=0.210 Sum_probs=121.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC--Cc--ccccccceeEEEEEE-cCeEEEEEEcCCCCCC-----cchhhhccCCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE--VV--STIPTIGFNVETVQY-NNIKFQVWDLGGQTSI-----RPYWRCYFPNT 85 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~--~~--~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~-----~~~~~~~~~~~ 85 (182)
..+||+++|++|+|||||++++.++. +. .+.+|.+.....+.+ ++..+.+|||||++.+ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 46899999999999999999998773 32 267788888887776 6789999999999887 67788889999
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhh-cccCCCeEEEEeecCCCCCCCCHHH---HHHHhccccccCC---ccEEEEe
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEE-EELRGAVVLIFANKQDLPGALDDAA---VTEALELHKIKNR---QWAIFKT 158 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~iivv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~ 158 (182)
|++|+|+|+++++++..+..|...+... ...++.|+++|+||+|+.++....+ ............. .++++++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t 161 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT 161 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 9999999999999999887664433322 1135799999999999975322221 1111112222222 3789999
Q ss_pred cccCCCChHHHHHHHHHHH
Q 030149 159 SAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~~ 177 (182)
||++ .|+.++|..+...+
T Consensus 162 Sa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 162 SIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp CTTS-SHHHHHHHHHHHTT
T ss_pred eecC-ChHHHHHHHHHHHH
Confidence 9999 88999998887644
No 108
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.96 E-value=3e-28 Score=159.20 Aligned_cols=147 Identities=22% Similarity=0.275 Sum_probs=105.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEEcCeEEEEEEcCCCCCC-------cchhhhccCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSI-------RPYWRCYFPNTQ 86 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~d 86 (182)
++|+++|++|+|||||++++.+..+.. ..+ +.......+...+..+.+|||||.... ...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 589999999999999999999887543 222 334555666778889999999998763 345566789999
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCcc-EEEEecccCCCC
Q 030149 87 AIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQW-AIFKTSAIKGEG 165 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~g 165 (182)
++++|+|++++.+.. ..++...+.. .+.|+++|+||+|+.+.. ++ .. ... ..+. +++++||++|.|
T Consensus 82 ~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~----~~-~~~-~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 82 VVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKHE--LY----LG-PLY-GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp EEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGGG--GG----CG-GGG-GGSSCSCEECBTTTTBS
T ss_pred EEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccch--Hh----HH-HHH-hCCCCCeEEEecccCCC
Confidence 999999998864432 2344444333 478999999999996431 11 11 111 2233 599999999999
Q ss_pred hHHHHHHHHHHH
Q 030149 166 LFEGLDWLSNTL 177 (182)
Q Consensus 166 i~~l~~~l~~~~ 177 (182)
++++++++.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998875
No 109
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=2.3e-28 Score=160.66 Aligned_cols=148 Identities=30% Similarity=0.320 Sum_probs=106.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCc------chhhhccC--C
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIR------PYWRCYFP--N 84 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~ 84 (182)
+.++|+++|++|+|||||++++.+..+.. ..| |.......+.+++..+.+|||||++.+. .+...+++ +
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 46899999999999999999999876432 334 3344455666778999999999988764 23345554 7
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC----CHHHHHHHhccccccCCccEEEEecc
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL----DDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
+|++++|+|+++.++ ...|+..+.. .+.|+++|+||+|+.... ..+.+.+. .+++++++||
T Consensus 82 ~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~--------~~~~~~~~SA 146 (165)
T 2wji_A 82 PDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKI--------LGVKVVPLSA 146 (165)
T ss_dssp CSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHH--------HTSCEEECBG
T ss_pred CCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHH--------hCCCEEEEEc
Confidence 999999999987543 3345555433 378999999999984211 11222222 1356999999
Q ss_pred cCCCChHHHHHHHHHHHh
Q 030149 161 IKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~ 178 (182)
++|+|++++|+++.+.+.
T Consensus 147 ~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 147 AKKMGIEELKKAISIAVK 164 (165)
T ss_dssp GGTBSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999988763
No 110
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=3.2e-27 Score=169.37 Aligned_cols=162 Identities=19% Similarity=0.134 Sum_probs=120.6
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCccccc----ccceeEEEEEEc-CeEEEEEEcCCCCCCc----------c
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYN-NIKFQVWDLGGQTSIR----------P 76 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~-~~~~~~~D~~g~~~~~----------~ 76 (182)
..+.+.-.|+++|.+|+|||||+|++++.++....+ |........... +..+.+|||||..... .
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 345778899999999999999999999988764333 333444455566 8999999999987654 4
Q ss_pred hhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC-CCCCHHHHHHHhccccccCCccEE
Q 030149 77 YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP-GALDDAAVTEALELHKIKNRQWAI 155 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
.+..+++.+|++++|+|+++..+......|+..+.. .+.|+++|+||+|+. ...........+.... ....++
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i 158 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEI 158 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCE
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeE
Confidence 556778899999999999998877766554554433 478999999999997 3333333333333221 123569
Q ss_pred EEecccCCCChHHHHHHHHHHHhh
Q 030149 156 FKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 156 ~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
+++||++|.|++++++.+.+.+..
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEEeCCCCCCHHHHHHHHHHhCcc
Confidence 999999999999999999988754
No 111
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.95 E-value=3.4e-27 Score=170.99 Aligned_cols=163 Identities=17% Similarity=0.215 Sum_probs=120.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|.+|+|||||++++.++.+.. +.+|.+... ..+..++ ..+.+|||||++.+...+..+++.+|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 566999999999999999999999887755 556665332 2344444 456699999999999999999999999999
Q ss_pred EEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHh---------ccccccCCc-cEEEEec
Q 030149 91 VVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEAL---------ELHKIKNRQ-WAIFKTS 159 (182)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~S 159 (182)
|+|++++.++.... .|+..+.... .+.|+++|+||+|+.......+..... ........+ .+++++|
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 99999999998887 4555544332 389999999999986431111110000 000111123 3799999
Q ss_pred ccCCCChHHHHHHHHHHHhh
Q 030149 160 AIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~~ 179 (182)
|++|.|++++|+.|.+.+.+
T Consensus 311 a~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHHhc
Confidence 99999999999999988754
No 112
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=1.4e-28 Score=165.00 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=107.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEEcCeEEEEEEcCC-----------CCCCcchhhhccCC-
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGG-----------QTSIRPYWRCYFPN- 84 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~~~- 84 (182)
++|+++|++|+|||||++++.+..+.. +.|+.......+.+. .+.+||||| ++.+...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999887654 455554444444444 789999999 34445555556655
Q ss_pred CCeEEEEEeCCCcchHHHHH-HHHHH--------HHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccC--Ccc
Q 030149 85 TQAIIYVVDSSDTERLVIAK-DEFHA--------ILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKN--RQW 153 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~-~~~~~--------~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~ 153 (182)
++++++|+++.+..++.... .|... +.......+.|+++|+||+|+.... .+...+......... ...
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLSEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGGGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhhccCC
Confidence 66555555555566776653 33321 2233334689999999999997643 222222111111110 124
Q ss_pred EEEEecccCCCChHHHHHHHHHHHhhcC
Q 030149 154 AIFKTSAIKGEGLFEGLDWLSNTLKSIG 181 (182)
Q Consensus 154 ~~~~~S~~~~~gi~~l~~~l~~~~~~~~ 181 (182)
+++++||++|.|++++|++|.+.+.+.+
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 5899999999999999999999887654
No 113
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=6.2e-28 Score=168.93 Aligned_cols=162 Identities=11% Similarity=0.088 Sum_probs=114.6
Q ss_pred cCCcccEEEEEcCC---------CCCHHHHHHHHhcC---CCcc-ccccc-cee--EE----------------EEEEcC
Q 030149 13 FGNKEARILVLGLD---------NAGKTTILYRLQMG---EVVS-TIPTI-GFN--VE----------------TVQYNN 60 (182)
Q Consensus 13 ~~~~~~~v~v~G~~---------~~GKtsli~~~~~~---~~~~-~~~t~-~~~--~~----------------~~~~~~ 60 (182)
...+.+||+++|.+ |+|||||++++.+. .+.. +.+|. +.. .. .++...
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 34677999999999 99999999999984 4433 44443 211 00 122355
Q ss_pred eEEEEEE-----------------------cCCCCCCcchhhhccC---------------------CCCeEEEEEeCCC
Q 030149 61 IKFQVWD-----------------------LGGQTSIRPYWRCYFP---------------------NTQAIIYVVDSSD 96 (182)
Q Consensus 61 ~~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~ii~v~d~~~ 96 (182)
..+.+|| ++|++.+..++..+++ ++|++|+|+|+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 7899999 6667767777777776 7999999999999
Q ss_pred c--chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 97 T--ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 97 ~--~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
+ ++++.+..|+..+.......+.|+++|+||+|+... ..+.+ .........+++++++||++|.|++++|++|.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~---~~v~~-~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~ 250 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE---RYIRD-AHTFALSKKNLQVVETSARSNVNVDLAFSTLV 250 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH---HHHHH-HHHHHHTSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc---HHHHH-HHHHHHhcCCCeEEEEECCCCCCHHHHHHHHH
Confidence 8 899999988888876544568999999999998642 22211 11111112356799999999999999999999
Q ss_pred HHHh
Q 030149 175 NTLK 178 (182)
Q Consensus 175 ~~~~ 178 (182)
+.+.
T Consensus 251 ~~l~ 254 (255)
T 3c5h_A 251 QLID 254 (255)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8875
No 114
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.95 E-value=2.9e-27 Score=159.87 Aligned_cols=159 Identities=19% Similarity=0.312 Sum_probs=122.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce--eEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...++|+++|++|||||||++++.+..+.. +.||.+. ....+.+.+ ..+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 456899999999999999999999887755 5666653 344555655 56789999999988888888889999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|+.+..++.....|+..+... ...+.|+++++||+|+.+.. ...+.. .+ ...+++.++++|++++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~-~l----~~~~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEAR-AF----AEKNNLSFIETSALDSTNVE 156 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHH-HH----HHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHH-HH----HHHcCCeEEEEeCCCCCCHH
Confidence 999999998888877777665432 23578999999999996422 222222 22 22345779999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
++++.|.+.+.+
T Consensus 157 ~l~~~l~~~~~~ 168 (199)
T 2f9l_A 157 EAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 115
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.95 E-value=2.5e-27 Score=165.86 Aligned_cols=149 Identities=23% Similarity=0.262 Sum_probs=111.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcch------hhhcc--C
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY------WRCYF--P 83 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~ 83 (182)
.+.++|+++|++|+|||||++++.+..+.. ..| |.......+.+.+..+.+|||||...+... ...++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 567899999999999999999999877543 333 444555566667899999999999877652 24444 6
Q ss_pred CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC----CCHHHHHHHhccccccCCccEEEEec
Q 030149 84 NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA----LDDAAVTEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+|++++|+|+++.++. ..++.++.. .+.|+++|+||+|+.+. .+.+.+.+.+ +++++++|
T Consensus 83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l--------g~~vi~~S 147 (258)
T 3a1s_A 83 DADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHL--------GIPVVFTS 147 (258)
T ss_dssp CCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHH--------CSCEEECC
T ss_pred CCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHc--------CCCEEEEE
Confidence 89999999999987543 234444443 37999999999998432 1122332222 46799999
Q ss_pred ccCCCChHHHHHHHHHHHh
Q 030149 160 AIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~ 178 (182)
|++|.|++++++.+.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999998775
No 116
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.94 E-value=1.6e-27 Score=163.77 Aligned_cols=164 Identities=17% Similarity=0.113 Sum_probs=108.4
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCC-ccccc----ccceeEEEEE-EcCeEEEEEEcCCCCCC----------c
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEV-VSTIP----TIGFNVETVQ-YNNIKFQVWDLGGQTSI----------R 75 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~-~~~~~----t~~~~~~~~~-~~~~~~~~~D~~g~~~~----------~ 75 (182)
......++|+++|.+|+|||||++++.+... ....+ |.......+. ..+..+.+|||||.... .
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 3446779999999999999999999998873 23222 2233333333 34689999999995432 3
Q ss_pred chhhhccCC---CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccccc---
Q 030149 76 PYWRCYFPN---TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIK--- 149 (182)
Q Consensus 76 ~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 149 (182)
.....+++. +|++++|+|+++..+.. ...++..+ .. .+.|+++|+||+|+...................
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l-~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWF-AP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHH-GG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHH-Hh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 333344443 78899999998754321 22233322 22 478999999999997543322222222211111
Q ss_pred ---CCccEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 150 ---NRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 150 ---~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
....+++++||++|.|+++++++|.+.+...
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 3567899999999999999999999987653
No 117
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.94 E-value=1.9e-26 Score=164.56 Aligned_cols=156 Identities=17% Similarity=0.078 Sum_probs=111.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccc--cc--ccceeEEEEEEcCeEEEEEEcCCCCC--------Ccchhhhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST--IP--TIGFNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 82 (182)
.+..+|+++|++|+|||||+|++++.++... .| |...........+..+.+|||||..+ +......++
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 4567899999999999999999999887542 22 33333334455789999999999876 344556778
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
+.+|++++|+|++++.+.. ..++...+.... .+.|+++|+||+|+..... .+.+..... ....+++++||++
T Consensus 85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~---~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPE--EAMKAYHEL---LPEAEPRMLSALD 156 (301)
T ss_dssp SSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHH--HHHHHHHHT---STTSEEEECCTTC
T ss_pred hcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchH--HHHHHHHHh---cCcCcEEEEeCCC
Confidence 9999999999998765433 344443333321 3799999999999975422 122222221 2335699999999
Q ss_pred CCChHHHHHHHHHHHh
Q 030149 163 GEGLFEGLDWLSNTLK 178 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~ 178 (182)
|.|++++++.+.+.+.
T Consensus 157 g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 157 ERQVAELKADLLALMP 172 (301)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHhcc
Confidence 9999999999987654
No 118
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.94 E-value=1.7e-27 Score=166.43 Aligned_cols=144 Identities=20% Similarity=0.199 Sum_probs=106.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcc----------hhhhcc--
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRP----------YWRCYF-- 82 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~-- 82 (182)
.+|+++|.+|||||||+|++.+..... ..| |.......+.+.+..+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 489999999999999999999876433 334 44455666777889999999999887764 445556
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC----CHHHHHHHhccccccCCccEEEEe
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL----DDAAVTEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
+.+|++|+|+|+++.++...+. ..+. ..+.|+++|+||+|+.+.. ..+.+.+. .+++++++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~---~~l~----~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~--------lg~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLT---SQLF----ELGKPVVVALNMMDIAEHRGISIDTEKLESL--------LGCSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHH---HHHT----TSCSCEEEEEECHHHHHHTTCEECHHHHHHH--------HCSCEEEC
T ss_pred CCCCEEEEEeeCCCchhHHHHH---HHHH----HcCCCEEEEEEChhcCCcCCcHHHHHHHHHH--------cCCCEEEE
Confidence 8899999999998865443322 2222 2379999999999985321 12222222 24679999
Q ss_pred cccCCCChHHHHHHHHHH
Q 030149 159 SAIKGEGLFEGLDWLSNT 176 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~ 176 (182)
||++|.|++++++.+.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999765
No 119
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=6.7e-27 Score=156.61 Aligned_cols=151 Identities=28% Similarity=0.281 Sum_probs=112.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccc--cceeEEEEEEcCeEEEEEEcCCCCCCc------chhhhccC--
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPT--IGFNVETVQYNNIKFQVWDLGGQTSIR------PYWRCYFP-- 83 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t--~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~-- 83 (182)
.+.++|+++|++|+|||||++++.+..+.. ..|+ .......+.+.+..+.+|||||++.+. ..+..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 567899999999999999999999866433 3443 335556677788999999999998774 33445553
Q ss_pred CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC----CHHHHHHHhccccccCCccEEEEec
Q 030149 84 NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL----DDAAVTEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+|++++|+|..+ ++....|+..+.. .+.|+++|+||+|+.... ..+++.+. .+++++++|
T Consensus 85 ~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--------~~~~~~~~S 149 (188)
T 2wjg_A 85 KPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKI--------LGVKVVPLS 149 (188)
T ss_dssp CCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHH--------HTSCEEECB
T ss_pred CCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHH--------hCCCeEEEE
Confidence 5899999999765 4455556655543 478999999999984321 22222222 235699999
Q ss_pred ccCCCChHHHHHHHHHHHhhc
Q 030149 160 AIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~~~ 180 (182)
|++|.|++++++++.+.+.+.
T Consensus 150 a~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTTC
T ss_pred ecCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999988654
No 120
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.94 E-value=3.9e-26 Score=153.43 Aligned_cols=158 Identities=18% Similarity=0.291 Sum_probs=121.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEcCe--EEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNNI--KFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~~--~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...++|+++|++|||||||++++.+..+.. +.||.+.. ...+.+++. .+.+||++|.+.+...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 356899999999999999999999887754 66777643 445556554 5667999999998888888899999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC-HHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD-DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
+|+|..+..+++.+..|+..+... ...+.|+++++||+|+.+... .......+ ...+++.++++|++++.|+++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l----~~~~~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF----AEKNGLSFIETSALDSTNVEA 181 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHH----HHHcCCEEEEEeCCCCCCHHH
Confidence 999999998888777776655332 235789999999999864211 11222222 233567799999999999999
Q ss_pred HHHHHHHHH
Q 030149 169 GLDWLSNTL 177 (182)
Q Consensus 169 l~~~l~~~~ 177 (182)
+++.|.+.+
T Consensus 182 l~~~l~~~i 190 (191)
T 1oix_A 182 AFQTILTEI 190 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998765
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.94 E-value=1.3e-27 Score=168.77 Aligned_cols=148 Identities=20% Similarity=0.198 Sum_probs=107.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcc----------hhhhc-
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRP----------YWRCY- 81 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~- 81 (182)
++++|+++|.+|+|||||+|++.+..... ..| |.......+.+.+..+.+|||||+..+.. ....+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 57899999999999999999999877532 333 33445555666788999999999887662 12222
Q ss_pred -cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC----CHHHHHHHhccccccCCccEEE
Q 030149 82 -FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL----DDAAVTEALELHKIKNRQWAIF 156 (182)
Q Consensus 82 -~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
.+.+|++++|+|+++.++... +...+.. .+.|+++|+||+|+.+.. ..+.+.+. .+++++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~--------lg~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLY---LTLQLLE----LGIPCIVALNMLDIAEKQNIRIEIDALSAR--------LGCPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHH---HHHHHHH----HTCCEEEEEECHHHHHHTTEEECHHHHHHH--------HTSCEE
T ss_pred hhcCCCEEEEEecCCChHHHHH---HHHHHHh----cCCCEEEEEECccchhhhhHHHHHHHHHHh--------cCCCEE
Confidence 278999999999987654333 3333332 279999999999985321 12222222 246799
Q ss_pred EecccCCCChHHHHHHHHHHHh
Q 030149 157 KTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 157 ~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
++||++|.|++++++.+.+.+.
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999987654
No 122
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.94 E-value=1.5e-26 Score=173.16 Aligned_cols=159 Identities=16% Similarity=0.115 Sum_probs=114.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEEcCeEEEEEEcCCCCC----------Ccchhh-h
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTS----------IRPYWR-C 80 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~-~ 80 (182)
..++|+++|++|+|||||+|++++..... ..+ |.+.....+.+++..+.+|||||+.+ +..... .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 56899999999999999999999887643 222 33344456677888999999999732 222222 4
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEe
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
+++.+|++++|+|++++.++... .++..+.. .+.|+++|+||+|+.+... .++..+.+..........+++++
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 67889999999999998876664 34443332 5799999999999976533 23344444333333456789999
Q ss_pred cccCCCChHHHHHHHHHHHhh
Q 030149 159 SAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~~~~ 179 (182)
||++|.|++++++.+.+.+.+
T Consensus 329 SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999988765
No 123
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.93 E-value=9.5e-26 Score=169.48 Aligned_cols=155 Identities=22% Similarity=0.245 Sum_probs=99.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCc--cccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcchh--------hhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPYW--------RCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 82 (182)
.+.++|+++|.+|+|||||+|++.+.... ...+ |.......+.+++..+.+|||||..++...+ ..++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 35588999999999999999999987643 2223 4445556677899999999999987655432 3467
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
+.+|++++|+|++++.++.... .+..++... .+.|+++|+||+|+......+. +.+... ...+++++||++
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~-~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~~~--~~l~~~----~~~~~i~vSAkt 381 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELT-EIRELKAAH--PAAKFLTVANKLDRAANADALI--RAIADG----TGTEVIGISALN 381 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHH-HHHHHHHHC--TTSEEEEEEECTTSCTTTHHHH--HHHHHH----HTSCEEECBTTT
T ss_pred ccCCEEEEEEECCCCcchhhhH-HHHHHHHhc--CCCCEEEEEECcCCCCccchhH--HHHHhc----CCCceEEEEECC
Confidence 8999999999999988775322 222222322 2799999999999976533221 112111 114699999999
Q ss_pred CCChHHHHHHHHHHHh
Q 030149 163 GEGLFEGLDWLSNTLK 178 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~ 178 (182)
|+|+++++++|.+.+.
T Consensus 382 g~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 382 GDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TBSHHHHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999999886
No 124
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.93 E-value=9e-25 Score=154.23 Aligned_cols=151 Identities=25% Similarity=0.232 Sum_probs=112.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcc------hhhhcc--CC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRP------YWRCYF--PN 84 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~ 84 (182)
+.++|+++|++|+|||||++++.+..+.. ..+ |.......+.+.+..+.+|||||...+.. ....++ .+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 56899999999999999999999877633 344 34455566777889999999999887765 455555 78
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC----CCHHHHHHHhccccccCCccEEEEecc
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA----LDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
+|++++|+|+++.+ ....++..+... ...|+++|+||+|+.+. .....+.+.+ +++++++||
T Consensus 82 ~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~~~~Sa 147 (271)
T 3k53_A 82 ADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKEL--------GVPVIPTNA 147 (271)
T ss_dssp CSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHH--------SSCEEECBG
T ss_pred CcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHc--------CCcEEEEEe
Confidence 99999999987753 334444554443 23899999999997421 1223333322 367999999
Q ss_pred cCCCChHHHHHHHHHHHhhc
Q 030149 161 IKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~~ 180 (182)
++|.|++++++.+.+.+...
T Consensus 148 ~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 148 KKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp GGTBTHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999887653
No 125
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=1.6e-26 Score=162.72 Aligned_cols=147 Identities=24% Similarity=0.279 Sum_probs=104.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCC-ccccc--ccceeEEEEEEcCeEEEEEEcCCCCCCc------chhhhccC--C
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEV-VSTIP--TIGFNVETVQYNNIKFQVWDLGGQTSIR------PYWRCYFP--N 84 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~-~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~ 84 (182)
..++|+++|++|+|||||++++.+... ....| |.......+.. +..+.+|||||+..+. .....++. .
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 357999999999999999999998653 33334 33333333333 6789999999998775 34455554 6
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC----CCHHHHHHHhccccccCCccEEEEecc
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA----LDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
+|++++|+|+++.++. ..|..++.. .+.|+++|+||+|+... .+.+.+.+.+ +++++++||
T Consensus 81 ~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~vi~~SA 145 (272)
T 3b1v_A 81 ADSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL--------GVPVVATSA 145 (272)
T ss_dssp CSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECBT
T ss_pred CCEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc--------CCCEEEEEc
Confidence 9999999999876443 334444433 47999999999997421 1222332222 467999999
Q ss_pred cCCCChHHHHHHHHHHHh
Q 030149 161 IKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~ 178 (182)
++|.|++++++.+.+.+.
T Consensus 146 ~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 146 LKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTBSHHHHHHHHHHSCT
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 999999999999988654
No 126
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=2.6e-26 Score=175.79 Aligned_cols=157 Identities=20% Similarity=0.274 Sum_probs=110.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEE--------E----cCeEEEEEEcCCCCCCcchhhh
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQ--------Y----NNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~--------~----~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
..+.+||+++|.+|+|||||++++.+..+.. +.+|.+....+.. . ....+.+|||||++.+...+..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 4678999999999999999999999888765 6678776665442 1 2589999999999999999998
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEe
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
+++.+|++|+|+|+++.+. ...|+..+.... .+.|+++|+||+|+.+... .++..+... ..+.+++++
T Consensus 118 ~l~~~d~ii~V~D~s~~~~---~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~v 187 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDSN---KHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFP-----AIENRFHRI 187 (535)
T ss_dssp HHHSSEEEEEEECGGGGGG---HHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCG-----GGTTCEEEC
T ss_pred HccCCcEEEEEEeCCCchh---HHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHH-----hcCCceEEE
Confidence 9999999999999876543 455555554432 3689999999999975432 333333222 234569999
Q ss_pred cccCCCChHHHHHHHHHHHhhc
Q 030149 159 SAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
||++|.|++++++.+.+.+.+.
T Consensus 188 SA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 188 SCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp CC-----CTTHHHHHHHHHTCT
T ss_pred ecCcccCHHHHHHHHHHHHhcc
Confidence 9999999999999999987653
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.93 E-value=1.5e-24 Score=158.54 Aligned_cols=158 Identities=22% Similarity=0.229 Sum_probs=116.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCeEEEEEEcCCCCCCcc---------hhhhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---------YWRCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~~~ 82 (182)
...++|+++|.+|+|||||++++.+..... ...|.+.....+...+..+.+|||||...... ......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 467899999999999999999999876432 23355666666667788999999999754321 112334
Q ss_pred CCCCeEEEEEeCCCcc--hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 83 PNTQAIIYVVDSSDTE--RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
..+|++++|+|++++. ++.....++..+..... +.|+++|+||+|+......++..... ...+++++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVADEENIKRLEKFV-----KEKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCCHHHHHHHHHHH-----HHTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCChHHHHHHHHHH-----HhcCCCeEEEeC
Confidence 5689999999998876 56776777777655432 79999999999997532222222211 123567999999
Q ss_pred cCCCChHHHHHHHHHHHhh
Q 030149 161 IKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~ 179 (182)
++|+|++++++++.+.+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 128
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.93 E-value=2.5e-25 Score=164.99 Aligned_cols=164 Identities=15% Similarity=0.088 Sum_probs=115.2
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCccccc----ccce-------------------eEEEEEEcCeEEEEEEcC
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGF-------------------NVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~-------------------~~~~~~~~~~~~~~~D~~ 69 (182)
..++.++|+++|++++|||||+++|.+........ +.+. ...........+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 34678999999999999999999998754322100 1000 000001122789999999
Q ss_pred CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccc--c
Q 030149 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELH--K 147 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~--~ 147 (182)
|++++...+..++..+|++++|+|+++..++.....++...... ...|+++|+||+|+.+.....+..+.+... .
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999877666666666544332 236899999999997543222222222111 1
Q ss_pred ccCCccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 148 IKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 148 ~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
.....++++++||++|.|++++++.|.+.+..
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 12236689999999999999999999987643
No 129
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=1.3e-26 Score=158.68 Aligned_cols=119 Identities=26% Similarity=0.382 Sum_probs=96.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc----cccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCC----C
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN----T 85 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~ 85 (182)
..+.++|+++|++|+|||||++++.+..+.. +.++.+.. +....+.+|||||++.+...+..+++. +
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-----YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT-----GGGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE-----eeCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 4677999999999999999999999887654 33333221 266789999999999998888888876 8
Q ss_pred CeEEEEEeCC-CcchHHHHHHHHHHHHhhcc---cCCCeEEEEeecCCCCCCCCHH
Q 030149 86 QAIIYVVDSS-DTERLVIAKDEFHAILEEEE---LRGAVVLIFANKQDLPGALDDA 137 (182)
Q Consensus 86 d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~Dl~~~~~~~ 137 (182)
|++|+|+|++ +++++.....|+..+..... ..+.|+++|+||+|+.......
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 139 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 139 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence 9999999999 88899999888888876532 3689999999999998765543
No 130
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.93 E-value=1.2e-25 Score=169.11 Aligned_cols=161 Identities=16% Similarity=0.150 Sum_probs=114.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEEcCeEEEEEEcCC----------CCCCcchhh-
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGG----------QTSIRPYWR- 79 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~- 79 (182)
...++|+++|.+|+|||||++++.+..... ..+ |.......+...+..+.+||||| ++.+.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 457999999999999999999999776332 222 33344456677888999999999 444444433
Q ss_pred hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEE
Q 030149 80 CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
.+++.+|++++|+|+++..+ ....++...... .+.|+++|+||+|+.+... .++..+............++++
T Consensus 273 ~~~~~ad~~llviD~~~~~~--~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGII--EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCcC--HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 36788999999999987543 222333333332 5799999999999975432 2444444443333334578999
Q ss_pred ecccCCCChHHHHHHHHHHHhhc
Q 030149 158 TSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
+||++|.|++++|+.+.+.+.+.
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHHh
Confidence 99999999999999999887653
No 131
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.92 E-value=8.9e-25 Score=158.55 Aligned_cols=134 Identities=21% Similarity=0.326 Sum_probs=108.0
Q ss_pred cccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCC----------cchHHHHHHHHHHHHhhccc
Q 030149 47 PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSD----------TERLVIAKDEFHAILEEEEL 116 (182)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 116 (182)
||.|.....+.+++..+.+|||+|++.++..|..++++++++|+|+|+++ ..++.....|+..+......
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 46677777788889999999999999999999999999999999999998 56799999999999876666
Q ss_pred CCCeEEEEeecCCCCC-----------------CCCHHHHHHHhccc----cc--cCCccEEEEecccCCCChHHHHHHH
Q 030149 117 RGAVVLIFANKQDLPG-----------------ALDDAAVTEALELH----KI--KNRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 117 ~~~~iivv~nK~Dl~~-----------------~~~~~~~~~~~~~~----~~--~~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
.+.|+++++||+|+.+ +...++..+..... .. ....+.+++|||++++||+++|+++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence 7899999999999842 12333433333211 10 1356789999999999999999999
Q ss_pred HHHHhhc
Q 030149 174 SNTLKSI 180 (182)
Q Consensus 174 ~~~~~~~ 180 (182)
.+.+.+.
T Consensus 339 ~~~i~~~ 345 (353)
T 1cip_A 339 TDVIIKN 345 (353)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887643
No 132
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.92 E-value=6.3e-25 Score=165.17 Aligned_cols=149 Identities=22% Similarity=0.306 Sum_probs=112.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCc--cccc--ccceeEEEEEEcCeEEEEEEcCCCC-CCcc--------hhhhccC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQT-SIRP--------YWRCYFP 83 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~-~~~~--------~~~~~~~ 83 (182)
.++|+++|.+|+|||||+|++.+.+.. ...| |.+.....+.+++..+.+|||||.. +... ....+++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~ 322 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE 322 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence 489999999999999999999987643 2223 5556677788899999999999987 5432 2345688
Q ss_pred CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCC
Q 030149 84 NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKG 163 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (182)
.+|++|+|+|++++.++... ..+ ..+ .++|+++|+||+|+.+....+++.+.. ....+++++||++|
T Consensus 323 ~aD~vl~VvD~s~~~s~~~~-~il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~------~~~~~~i~iSAktg 389 (482)
T 1xzp_A 323 KADIVLFVLDASSPLDEEDR-KIL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKL------GTDRHMVKISALKG 389 (482)
T ss_dssp HCSEEEEEEETTSCCCHHHH-HHH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHH------TCSTTEEEEEGGGT
T ss_pred cccEEEEEecCCCCCCHHHH-HHH-HHh-----cCCCEEEEEECcccccccCHHHHHHHh------cCCCcEEEEECCCC
Confidence 89999999999988776543 222 221 378999999999997654444443322 12346999999999
Q ss_pred CChHHHHHHHHHHHh
Q 030149 164 EGLFEGLDWLSNTLK 178 (182)
Q Consensus 164 ~gi~~l~~~l~~~~~ 178 (182)
+|++++++.|.+.+.
T Consensus 390 ~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 390 EGLEKLEESIYRETQ 404 (482)
T ss_dssp CCHHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998754
No 133
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.92 E-value=1.3e-25 Score=166.32 Aligned_cols=153 Identities=20% Similarity=0.190 Sum_probs=109.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc----cccccceeEEEEEEcCe-EEEEEEcCCCCCCcch-------hhhc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNI-KFQVWDLGGQTSIRPY-------WRCY 81 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~----~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~-------~~~~ 81 (182)
..+.++|+++|++|+|||||++++.+..+.. ...|.......+.+.+. .+.+|||||+.++... +..+
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 3567999999999999999999999887643 22244556666676554 9999999998876544 3457
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEeccc
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
++.+|++|+|+|+... .....|+..+.. .+.|+++|+||+|+...... +..+.+. ...+++++++||+
T Consensus 111 l~~aD~vllVvD~~~~---~~~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~~-~~~~~l~----~~~g~~v~~vSAk 178 (423)
T 3qq5_A 111 FYRADCGILVTDSAPT---PYEDDVVNLFKE----MEIPFVVVVNKIDVLGEKAE-ELKGLYE----SRYEAKVLLVSAL 178 (423)
T ss_dssp HTSCSEEEEECSSSCC---HHHHHHHHHHHH----TTCCEEEECCCCTTTTCCCT-HHHHHSS----CCTTCCCCCCSSC
T ss_pred HhcCCEEEEEEeCCCh---HHHHHHHHHHHh----cCCCEEEEEeCcCCCCccHH-HHHHHHH----HHcCCCEEEEECC
Confidence 8899999999998333 223444444433 37999999999999866543 2333332 2335679999999
Q ss_pred CCCChHHHHHHHHHHHh
Q 030149 162 KGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~~ 178 (182)
+|.|++++++.|.+.+.
T Consensus 179 tg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 179 QKKGFDDIGKTISEILP 195 (423)
T ss_dssp CTTSTTTHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHhhh
Confidence 99999999999998873
No 134
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.92 E-value=5.2e-25 Score=159.27 Aligned_cols=158 Identities=25% Similarity=0.260 Sum_probs=115.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcC-eEEEEEEcCCC----CCCcchhhhc---cCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQ----TSIRPYWRCY---FPNTQ 86 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~g~----~~~~~~~~~~---~~~~d 86 (182)
.+|+++|.+|+|||||++++.+.+... ...|...+...+.+.+ ..+.+|||||. .....+...+ ++.+|
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 479999999999999999998766432 2345566666677765 89999999994 3333344444 44599
Q ss_pred eEEEEEeCCC---cchHHHHHHHHHHHHhhcc-cCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 87 AIIYVVDSSD---TERLVIAKDEFHAILEEEE-LRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 87 ~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
++|+|+|+++ +++++....|...+..... ..++|+++|+||+|+... ++..+.+..... ...+++++||++
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~---~e~~~~l~~~l~--~~~~v~~iSA~t 313 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA---AENLEAFKEKLT--DDYPVFPISAVT 313 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH---HHHHHHHHHHCC--SCCCBCCCSSCC
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC---HHHHHHHHHHhh--cCCCEEEEECCC
Confidence 9999999998 7788888777777655421 257999999999999743 222222221111 115699999999
Q ss_pred CCChHHHHHHHHHHHhhc
Q 030149 163 GEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~~~ 180 (182)
++|++++++.|.+.+.+.
T Consensus 314 g~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 314 REGLRELLFEVANQLENT 331 (342)
T ss_dssp SSTTHHHHHHHHHHHTSC
T ss_pred CcCHHHHHHHHHHHHhhC
Confidence 999999999999998764
No 135
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.92 E-value=6.1e-24 Score=152.14 Aligned_cols=135 Identities=24% Similarity=0.332 Sum_probs=108.6
Q ss_pred ccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC----------CCcchHHHHHHHHHHHHhhcc
Q 030149 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS----------SDTERLVIAKDEFHAILEEEE 115 (182)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~~ 115 (182)
.||+|.....+.+++..+++|||+|++.++..|..++++++++|+|+|+ ++..++.....++..+.....
T Consensus 152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 4567888888888999999999999999999999999999999999955 467889999999999988777
Q ss_pred cCCCeEEEEeecCCCCC------------------CCCHHHHHHHhcc-----ccccCCccEEEEecccCCCChHHHHHH
Q 030149 116 LRGAVVLIFANKQDLPG------------------ALDDAAVTEALEL-----HKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 116 ~~~~~iivv~nK~Dl~~------------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
..+.|+++++||+|+.+ +.+.++..+.+.. .......+.++++||++++||+++|+.
T Consensus 232 ~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~ 311 (327)
T 3ohm_A 232 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA 311 (327)
T ss_dssp GTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHH
Confidence 77899999999999843 1233333332211 112345677999999999999999999
Q ss_pred HHHHHhhc
Q 030149 173 LSNTLKSI 180 (182)
Q Consensus 173 l~~~~~~~ 180 (182)
+.+.+.+.
T Consensus 312 v~~~Il~~ 319 (327)
T 3ohm_A 312 VKDTILQL 319 (327)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988653
No 136
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.92 E-value=3.8e-24 Score=155.72 Aligned_cols=132 Identities=27% Similarity=0.348 Sum_probs=98.2
Q ss_pred ccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCC----------cchHHHHHHHHHHHHhhcccC
Q 030149 48 TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSD----------TERLVIAKDEFHAILEEEELR 117 (182)
Q Consensus 48 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (182)
|.|.....+.+++..+.+|||+|++.++..|..++++++++|+|+|+++ ..++.....++..+.+.....
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 4566666777889999999999999999999999999999999999999 779999999999998776667
Q ss_pred CCeEEEEeecCCCCC------------------CCCHHHHHHHhccc---ccc---CCccEEEEecccCCCChHHHHHHH
Q 030149 118 GAVVLIFANKQDLPG------------------ALDDAAVTEALELH---KIK---NRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 118 ~~~iivv~nK~Dl~~------------------~~~~~~~~~~~~~~---~~~---~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
+.|+++++||+|+.+ +...++........ ... ...+.+++|||++++||+++|+.+
T Consensus 268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v 347 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV 347 (362)
T ss_dssp TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHH
Confidence 899999999999852 12334443322110 011 345779999999999999999999
Q ss_pred HHHHhh
Q 030149 174 SNTLKS 179 (182)
Q Consensus 174 ~~~~~~ 179 (182)
.+.+.+
T Consensus 348 ~~~i~~ 353 (362)
T 1zcb_A 348 KDTILH 353 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 137
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.92 E-value=7.9e-24 Score=151.24 Aligned_cols=156 Identities=19% Similarity=0.102 Sum_probs=108.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccc----ccceeEEEEEEcCeEEEEEEcCCCC---------CCcchhhhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYNNIKFQVWDLGGQT---------SIRPYWRCY 81 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~ 81 (182)
.+..+|+++|++|+|||||+|++++.++....+ |.......+..++..+.+|||||.. .+......+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 456689999999999999999999887643222 2233344455678999999999987 233445667
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEeccc
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
++.+|++++|+|+++ +.....++...+. ..+.|+++++||+|+... ...+.+.............++++||+
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~---~~~~P~ilvlNK~D~~~~--~~~~~~~l~~l~~~~~~~~~i~iSA~ 157 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLR---EGKAPVILAVNKVDNVQE--KADLLPHLQFLASQMNFLDIVPISAE 157 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHH---SSSSCEEEEEESTTTCCC--HHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHH---hcCCCEEEEEECcccCcc--HHHHHHHHHHHHHhcCcCceEEEECC
Confidence 889999999999976 2233334433332 247899999999999752 23332222211111111269999999
Q ss_pred CCCChHHHHHHHHHHHh
Q 030149 162 KGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~~ 178 (182)
+|.|++++++.+.+.+.
T Consensus 158 ~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 158 TGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTTHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHhCC
Confidence 99999999999987654
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=7.2e-25 Score=164.02 Aligned_cols=150 Identities=23% Similarity=0.283 Sum_probs=100.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCccccccccee----EEEEEEcCeEEEEEEcCCCC--------CCcchhhhccCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN----VETVQYNNIKFQVWDLGGQT--------SIRPYWRCYFPN 84 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~~ 84 (182)
..+|+++|.+|+|||||+|++.+.......++.+.+ ...+.+.+..+.+|||||.+ .+...+..+++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 368999999999999999999987766555544443 33444467899999999985 445566777889
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCcc-EEEEecccCC
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQW-AIFKTSAIKG 163 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~ 163 (182)
+|++|+|+|+.++.+... .++...+.. .++|+++|+||+|+.... . .... .. ..++ +++++||++|
T Consensus 83 ad~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~--~----~~~~-~~-~lg~~~~~~iSA~~g 149 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMR--A----NIYD-FY-SLGFGEPYPISGTHG 149 (436)
T ss_dssp CSEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC-----------CCCS-SG-GGSSCCCEECBTTTT
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccch--h----hHHH-HH-HcCCCCeEEEeCcCC
Confidence 999999999988765433 344444433 578999999999986431 0 1111 11 1122 5899999999
Q ss_pred CChHHHHHHHHHHHhh
Q 030149 164 EGLFEGLDWLSNTLKS 179 (182)
Q Consensus 164 ~gi~~l~~~l~~~~~~ 179 (182)
.|+.++++.+.+.+.+
T Consensus 150 ~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKN 165 (436)
T ss_dssp BTHHHHHHHHHHTGGG
T ss_pred CChHHHHHHHHHhcCc
Confidence 9999999999988763
No 139
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=4.7e-24 Score=159.77 Aligned_cols=160 Identities=19% Similarity=0.153 Sum_probs=110.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcch------------hh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY------------WR 79 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------------~~ 79 (182)
..++|+++|++|+|||||+|++.+..... ..+ |.......+.+++..+.+|||||....... ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 45899999999999999999999876533 222 333445567778889999999997432221 12
Q ss_pred hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEE
Q 030149 80 CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
.+++.+|++++++|+.+..+... ..+...+. ..+.|+++|+||+|+.+... .+++.+.+..........++++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~---~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQD--QRMAGLME---RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHH---HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHH---HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 35677899999999987765543 22223222 25799999999999975422 3334333333333334567999
Q ss_pred ecccCCCChHHHHHHHHHHHhhc
Q 030149 158 TSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
+||++|.|++++++.+.+.+.+.
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999877653
No 140
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=1.4e-23 Score=157.27 Aligned_cols=151 Identities=19% Similarity=0.196 Sum_probs=104.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEEcCeEEEEEEcCCCCCC---------cchhhhccCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSI---------RPYWRCYFPN 84 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~~ 84 (182)
.+|+++|.+|+|||||+|++.+..... ..| |.+.....+.+.+..+.+|||||.+.. ...+..+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 479999999999999999999877543 222 444556677888999999999997642 3345677899
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCcc-EEEEecccCC
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQW-AIFKTSAIKG 163 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~ 163 (182)
+|++++|+|+.+..+... .++...+.. .++|+++|+||+|+.+.. ..+....+. ..++ +++++||++|
T Consensus 82 ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~-----~lg~~~~~~iSA~~g 150 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELY-----SLGFGEPIPVSAEHN 150 (439)
T ss_dssp CSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHG-----GGSSCSCEECBTTTT
T ss_pred CCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHH-----hcCCCCEEEEeccCC
Confidence 999999999987654332 333333332 378999999999974210 111101111 1122 4899999999
Q ss_pred CChHHHHHHHHHHHhh
Q 030149 164 EGLFEGLDWLSNTLKS 179 (182)
Q Consensus 164 ~gi~~l~~~l~~~~~~ 179 (182)
.|++++++.+.+.+.+
T Consensus 151 ~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 151 INLDTMLETIIKKLEE 166 (439)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccc
Confidence 9999999999988864
No 141
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.91 E-value=7.8e-25 Score=165.26 Aligned_cols=159 Identities=18% Similarity=0.149 Sum_probs=111.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC----Cc----c--cccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE----VV----S--TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~----~~----~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 84 (182)
++.++|+++|++++|||||+++|.+.. .. . ...|.......+.+.+..+.+|||||++++...+...+..
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~ 96 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 96 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhh
Confidence 578999999999999999999998766 21 1 2235555556677788999999999999988888888999
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccc---cCCccEEEEeccc
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKI---KNRQWAIFKTSAI 161 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~S~~ 161 (182)
+|++|+|+|+++... ......+. .+.. .+.|+++++||+|+.++...+...+.+..... .....+++++||+
T Consensus 97 aD~~ilVvda~~g~~-~qt~e~l~-~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~ 171 (482)
T 1wb1_A 97 IDLALIVVDAKEGPK-TQTGEHML-ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK 171 (482)
T ss_dssp CCEEEEEEETTTCSC-HHHHHHHH-HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred CCEEEEEEecCCCcc-HHHHHHHH-HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECc
Confidence 999999999987321 11122222 2222 36888999999999753222222222221110 1125679999999
Q ss_pred CCCChHHHHHHHHHHHh
Q 030149 162 KGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~~ 178 (182)
+|+|++++++.|.+.+.
T Consensus 172 ~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 172 TGFGVDELKNLIITTLN 188 (482)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhc
Confidence 99999999999998764
No 142
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.91 E-value=2.7e-24 Score=161.08 Aligned_cols=151 Identities=16% Similarity=0.179 Sum_probs=102.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCc--cccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcch--------hhhccC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYFP 83 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~ 83 (182)
..++|+++|++|+|||||+|++.+.... ...+ |.......+.+++..+.+|||||..+.... ...+++
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~ 302 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN 302 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhh
Confidence 4578999999999999999999876543 2223 333555567778999999999997654332 233678
Q ss_pred CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCC
Q 030149 84 NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKG 163 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (182)
.+|++++|+|++++.+... ..++..+ ...|+++|+||+|+....... .... .....+++++||++|
T Consensus 303 ~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~----~~~~---~~~~~~~i~iSAktg 368 (462)
T 3geh_A 303 TADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT----SLEY---PENITQIVHTAAAQK 368 (462)
T ss_dssp SCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST----TCCC---CTTCCCEEEEBTTTT
T ss_pred cCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH----HHHH---hccCCcEEEEECCCC
Confidence 8999999999998766443 2333322 247999999999997542211 1111 113457999999999
Q ss_pred CChHHHHHHHHHHHhhc
Q 030149 164 EGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 164 ~gi~~l~~~l~~~~~~~ 180 (182)
.|++++++.|.+.+...
T Consensus 369 ~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 369 QGIDSLETAILEIVQTG 385 (462)
T ss_dssp BSHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 99999999999987653
No 143
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.91 E-value=9.6e-24 Score=156.73 Aligned_cols=160 Identities=16% Similarity=0.085 Sum_probs=103.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc----ccc--ccceeEEEEEE---------------c--------CeEEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS----TIP--TIGFNVETVQY---------------N--------NIKFQ 64 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~----~~~--t~~~~~~~~~~---------------~--------~~~~~ 64 (182)
+.+.++|+++|+.++|||||+++|.+..... ..+ |++........ . ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 3567999999999999999999998543221 223 55433332222 0 16899
Q ss_pred EEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH----HHHH
Q 030149 65 VWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD----AAVT 140 (182)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~----~~~~ 140 (182)
+|||||++.+...+...+..+|++|+|+|+++..........+..+ ... ...|+++++||+|+.+.... +++.
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~i~ 161 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL-EIL--GIDKIIIVQNKIDLVDEKQAEENYEQIK 161 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHT--TCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH-HHc--CCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence 9999999988888888888899999999998653222222222222 221 23589999999999764321 2333
Q ss_pred HHhccccccCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 141 EALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+.+... .....+++++||++|+|+++|++.|.+.+.
T Consensus 162 ~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 162 EFVKGT--IAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHTTS--TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHhhc--CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 332211 124567999999999999999999998765
No 144
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.91 E-value=8.5e-26 Score=171.19 Aligned_cols=160 Identities=16% Similarity=0.114 Sum_probs=113.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEE-cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
++.++|+++|++++|||||+++|.+..+.. ..+ |.......+.. .+..+.+|||||++.+..++..+++.+|++|+
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 356899999999999999999998765543 222 33333333333 45689999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC---HHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD---DAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
|+|+++...... ...+... ...+.|+++++||+|+..... ..++..............+++++||++|.|++
T Consensus 82 VVDa~dg~~~qt-~e~l~~~----~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 82 VVAADDGVMKQT-VESIQHA----KDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp ECBSSSCCCHHH-HHHHHHH----HTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEECCCCccHHH-HHHHHHH----HHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 999988654322 2223222 234789999999999864321 12222211111111235689999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
++++.+...+..
T Consensus 157 eLle~I~~l~~~ 168 (537)
T 3izy_P 157 ALAEATIALAEM 168 (537)
T ss_dssp HHHHHHHHHHTT
T ss_pred hHHHHHHHhhhc
Confidence 999999987653
No 145
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.91 E-value=1.4e-23 Score=159.62 Aligned_cols=114 Identities=15% Similarity=0.155 Sum_probs=88.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC------------------CCcc-------cccccceeEEEEEEcCeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG------------------EVVS-------TIPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~------------------~~~~-------~~~t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.+..+|+++|++|+|||||+++|+.. .... ...|.......+.+.+..+++||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 45689999999999999999999611 1111 1225556677788899999999999
Q ss_pred CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
|+.++...+..+++.+|++|+|+|+++..+.... ..|..... .+.|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLMEVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEeCCCCccc
Confidence 9999999999999999999999999887654443 33333322 47899999999999654
No 146
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.91 E-value=3.3e-23 Score=144.23 Aligned_cols=163 Identities=13% Similarity=0.115 Sum_probs=105.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc--c---ccccceeEEEEEEcCeEEEEEEcCCC--------CCCcchhhhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--T---IPTIGFNVETVQYNNIKFQVWDLGGQ--------TSIRPYWRCY 81 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~---~~t~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~ 81 (182)
.+.++|+++|.+|+|||||+|++++..... . ..|...........+..+.+|||||. +.+......+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 577999999999999999999999887654 1 13455666777788999999999996 3343333333
Q ss_pred c----CCCCeEEEEEeCCCcchHH-HHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHH-----hccccccCC
Q 030149 82 F----PNTQAIIYVVDSSDTERLV-IAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEA-----LELHKIKNR 151 (182)
Q Consensus 82 ~----~~~d~ii~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~ 151 (182)
+ +.+|++|+|+|+++....+ ....++...+. ....+.|+++++||+|+.... .++.... +. ......
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~-~~~~~~~iilv~nK~Dl~~~~-~~~~l~~~~~~~l~-~l~~~~ 175 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFG-EDVLKWMVIVFTRKEDLAGGS-LHDYVSNTENRALR-ELVAEC 175 (247)
T ss_dssp HHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHC-GGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHH-HHHHHT
T ss_pred HHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhC-hhhhccEEEEEEchHhcCCCC-HHHHHhhcccHHHH-HHHHHc
Confidence 3 8999999999997532221 12233333321 122368999999999997542 2222211 11 111122
Q ss_pred ccEEEEecccC-----CCChHHHHHHHHHHHhhc
Q 030149 152 QWAIFKTSAIK-----GEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 152 ~~~~~~~S~~~-----~~gi~~l~~~l~~~~~~~ 180 (182)
+.++...+... +.|+++|++.+.+.+.+.
T Consensus 176 g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 176 GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 33355454433 689999999999988753
No 147
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.91 E-value=9.5e-24 Score=156.90 Aligned_cols=162 Identities=14% Similarity=0.086 Sum_probs=109.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc----ccc--ccceeEEEEEEc-----------------------CeEEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS----TIP--TIGFNVETVQYN-----------------------NIKFQ 64 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~----~~~--t~~~~~~~~~~~-----------------------~~~~~ 64 (182)
+...++|+++|++++|||||+++|.+..... ..+ |+........+. ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4677999999999999999999998543211 223 554443333220 16899
Q ss_pred EEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhc
Q 030149 65 VWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALE 144 (182)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~ 144 (182)
+|||||++++.......+..+|++|+|+|+++..........+..+ ... ...|+++++||+|+.+.....+..+...
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~~--~~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL-QII--GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-HHH--TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 9999999988888777888899999999998653122222222222 211 2358999999999975422111111111
Q ss_pred ccc--ccCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 145 LHK--IKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 145 ~~~--~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
... ......+++++||++|.|+++|++.|.+.+.
T Consensus 164 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 164 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 111 1124578999999999999999999988664
No 148
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.91 E-value=1.1e-23 Score=161.92 Aligned_cols=156 Identities=22% Similarity=0.180 Sum_probs=108.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccc-----cccceeEEEEE----------------EcCeEEEEEEcCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTI-----PTIGFNVETVQ----------------YNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~-----~t~~~~~~~~~----------------~~~~~~~~~D~~g~~~ 73 (182)
.+.++|+++|++++|||||++++.+..+..+. ++.+....... +....+.+|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 46789999999999999999999876544322 24443333221 1122699999999999
Q ss_pred CcchhhhccCCCCeEEEEEeCCC---cchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--------------H
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSD---TERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--------------D 136 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--------------~ 136 (182)
|..++..+++.+|++|+|+|+++ ++++.... .+. ..+.|+++++||+|+..... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~----~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILR----MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHH----HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHH----HcCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 99999988999999999999988 44433322 221 24789999999999964211 0
Q ss_pred H-----------HHHHHhccccc----------cCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 137 A-----------AVTEALELHKI----------KNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 137 ~-----------~~~~~~~~~~~----------~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+ ++...+..... .....+++++||++|.|+++++++|...+.
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 1 11111111111 123568999999999999999999998765
No 149
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.91 E-value=8.9e-24 Score=154.58 Aligned_cols=149 Identities=9% Similarity=0.049 Sum_probs=109.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE 98 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
+|+++|++++|||||+++|. .+..|++.....+...+..+.+|||||++++.......++.+|++|+|+| +. .
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-G 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-C
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-C
Confidence 99999999999999999998 44556666666677788899999999999998888888899999999999 43 3
Q ss_pred hHHHHHHHHHHHHhhcccCCCeE-EEEee-cCCCCCCCCHHHHHHHhccccc--cCCccEEEE--ecccC---CCChHHH
Q 030149 99 RLVIAKDEFHAILEEEELRGAVV-LIFAN-KQDLPGALDDAAVTEALELHKI--KNRQWAIFK--TSAIK---GEGLFEG 169 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~i-ivv~n-K~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~S~~~---~~gi~~l 169 (182)
.+.....++..... .+.|. ++++| |+|+ ++...++..+.+..... ....+++++ +||++ ++|++++
T Consensus 96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L 170 (370)
T 2elf_A 96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDEL 170 (370)
T ss_dssp CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHH
T ss_pred CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHH
Confidence 34444444444322 35666 89999 9999 43211222122221111 123578999 99999 9999999
Q ss_pred HHHHHHHHhh
Q 030149 170 LDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~~~~ 179 (182)
++.|.+.+..
T Consensus 171 ~~~l~~~~~~ 180 (370)
T 2elf_A 171 KARINEVAEK 180 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhccc
Confidence 9999988754
No 150
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.90 E-value=8.9e-24 Score=157.97 Aligned_cols=153 Identities=17% Similarity=0.189 Sum_probs=104.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc----------------------------------cccccceeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS----------------------------------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~----------------------------------~~~t~~~~~~~~~~~~ 60 (182)
...++|+++|++++|||||+++|+...... ...|+......+...+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 567999999999999999999995432100 1124445555566688
Q ss_pred eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcch---HH---HHHHHHHHHHhhcccCCCe-EEEEeecCCCCCC
Q 030149 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTER---LV---IAKDEFHAILEEEELRGAV-VLIFANKQDLPGA 133 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~ 133 (182)
..+.+|||||++++...+..++..+|++|+|+|+++... ++ .....+... .. .+.| +++++||+|+...
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~-~~---~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-KT---AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH-HH---cCCCeEEEEeecCCCccc
Confidence 899999999999999999999999999999999987532 11 122222222 11 3556 9999999999643
Q ss_pred CC----HHHHHHHh----ccccccC-CccEEEEecccCCCChHHHHH
Q 030149 134 LD----DAAVTEAL----ELHKIKN-RQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 134 ~~----~~~~~~~~----~~~~~~~-~~~~~~~~S~~~~~gi~~l~~ 171 (182)
.. .+++.+.+ ....... ..++++++||++|.|++++.+
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 21 11222221 1111111 257899999999999999655
No 151
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4e-24 Score=143.65 Aligned_cols=126 Identities=29% Similarity=0.425 Sum_probs=97.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCccc----ccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCC----C
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVST----IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN----T 85 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~ 85 (182)
..+.++|+++|++|+|||||++++.+..+... .++.+. .+....+.+|||||++.+...+..++.. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 36779999999999999999999998775442 222222 2267889999999999888877777665 8
Q ss_pred CeEEEEEeCC-CcchHHHHHHHHHHHHhhcc---cCCCeEEEEeecCCCCCCCCHHHHHHHhc
Q 030149 86 QAIIYVVDSS-DTERLVIAKDEFHAILEEEE---LRGAVVLIFANKQDLPGALDDAAVTEALE 144 (182)
Q Consensus 86 d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~Dl~~~~~~~~~~~~~~ 144 (182)
|++|+|+|++ +++++.....|+..+..... ..+.|+++|+||+|+.+....+++.+.+.
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE 182 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence 9999999999 88899888888888776532 25799999999999987766666655544
No 152
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.90 E-value=4.8e-23 Score=150.33 Aligned_cols=158 Identities=20% Similarity=0.135 Sum_probs=107.3
Q ss_pred cE-EEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCeEEEEEEcCCCCC---------CcchhhhccCC
Q 030149 18 AR-ILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTS---------IRPYWRCYFPN 84 (182)
Q Consensus 18 ~~-v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~ 84 (182)
++ |+++|++|+|||||+|++.+..... ..+|.+.....+.+.+..+.+|||+|.-. +... ...+..
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~~ 257 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVT-LSEAKY 257 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHH-HHGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHH-HHHHHh
Confidence 44 9999999999999999999877522 34566677778888889999999999622 1222 234788
Q ss_pred CCeEEEEEeCCCcc--hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHh---ccccccCCccEEEEec
Q 030149 85 TQAIIYVVDSSDTE--RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEAL---ELHKIKNRQWAIFKTS 159 (182)
Q Consensus 85 ~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~S 159 (182)
+|++++|+|++++. ..... ..+..++......+.|+++|+||+|+.+.. ........ ... ......+++++|
T Consensus 258 aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~-l~~~~~~~~~~S 334 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKE-LYSPIFDVIPIS 334 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHH-HCSCEEEEEECB
T ss_pred CCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHH-hcCCCCcEEEEE
Confidence 99999999998876 33332 333344444444578999999999997543 22211111 011 002234689999
Q ss_pred ccCCCChHHHHHHHHHHHhh
Q 030149 160 AIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~~ 179 (182)
|++|.|++++++.|.+.+..
T Consensus 335 A~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcc
Confidence 99999999999999987764
No 153
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.90 E-value=7.4e-24 Score=148.73 Aligned_cols=164 Identities=13% Similarity=0.116 Sum_probs=104.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc---ccceeEEEEEEcCeEEEEEEcCCCCCCcc-----------h
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP---TIGFNVETVQYNNIKFQVWDLGGQTSIRP-----------Y 77 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~---t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~ 77 (182)
..+.++|+++|++|+|||||++++++..... ..+ |.......+.+.+..+.+|||||...+.. .
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999999877332 222 44455566777899999999999765432 1
Q ss_pred hhhccCCCCeEEEEEeCCCcchHH-HHHHHHHHHHhhcccCCCeEEEEee-cCCCCCCCCHHHH---------HHHhccc
Q 030149 78 WRCYFPNTQAIIYVVDSSDTERLV-IAKDEFHAILEEEELRGAVVLIFAN-KQDLPGALDDAAV---------TEALELH 146 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~iivv~n-K~Dl~~~~~~~~~---------~~~~~~~ 146 (182)
...+++.+|++|+|+|+++..... ....++...... ....|.++++| |+|+... ..... .......
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence 223678999999999998633221 122233332211 11356666666 9999743 33221 1111111
Q ss_pred cccCCccEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 147 KIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
......+..+++||++|.|++++|+.|.+.+...
T Consensus 176 ~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 176 GGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 1110001118899999999999999999988753
No 154
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.90 E-value=2.7e-23 Score=149.36 Aligned_cols=134 Identities=25% Similarity=0.342 Sum_probs=106.8
Q ss_pred ccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCC----------CcchHHHHHHHHHHHHhhcc
Q 030149 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSS----------DTERLVIAKDEFHAILEEEE 115 (182)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~ 115 (182)
.+|.|.....+.+++..+++|||+|++.++..|..++++++++|+|+|++ +..++.+...|+..+.....
T Consensus 146 ~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 146 TKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp CCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred cceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence 34667778888889999999999999999999999999999999999998 77899999999999988777
Q ss_pred cCCCeEEEEeecCCCCCC-----------------CCHHHHHHHhcccc-----------ccC-----------CccEEE
Q 030149 116 LRGAVVLIFANKQDLPGA-----------------LDDAAVTEALELHK-----------IKN-----------RQWAIF 156 (182)
Q Consensus 116 ~~~~~iivv~nK~Dl~~~-----------------~~~~~~~~~~~~~~-----------~~~-----------~~~~~~ 156 (182)
..+.|+++++||+|+.+. .+.++..+.+.... ... ..+.+.
T Consensus 226 ~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h 305 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTN 305 (340)
T ss_dssp GTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEE
T ss_pred cCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEE
Confidence 778999999999998421 12223322222111 111 357799
Q ss_pred EecccCCCChHHHHHHHHHHHhh
Q 030149 157 KTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 157 ~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
++||+++.+|+.+|+.+.+.+.+
T Consensus 306 ~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 306 PTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeeCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999887753
No 155
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.90 E-value=2.8e-23 Score=155.28 Aligned_cols=157 Identities=18% Similarity=0.116 Sum_probs=104.9
Q ss_pred hhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-------------c-----------------------cccccee
Q 030149 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-------------T-----------------------IPTIGFN 52 (182)
Q Consensus 9 ~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-------------~-----------------------~~t~~~~ 52 (182)
+.+....+.++|+++|++++|||||+++|+...... . .-|+...
T Consensus 16 l~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~ 95 (434)
T 1zun_B 16 LGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVA 95 (434)
T ss_dssp CCSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCE
T ss_pred HhhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEee
Confidence 334444566999999999999999999997543100 0 1122333
Q ss_pred EEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 53 VETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 53 ~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
...+...+..+.+|||||++++...+..++..+|++|+|+|+++... .....++... ... ...|+++|+||+|+.+
T Consensus 96 ~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~-~~~--~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 96 YRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIA-SLL--GIKHIVVAINKMDLNG 171 (434)
T ss_dssp EEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHH-HHT--TCCEEEEEEECTTTTT
T ss_pred eeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHH-HHc--CCCeEEEEEEcCcCCc
Confidence 44455578899999999999998888888999999999999987643 2223333322 221 1246999999999975
Q ss_pred CCCHHH---HHHHhc----cccccCCccEEEEecccCCCChHHHH
Q 030149 133 ALDDAA---VTEALE----LHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 133 ~~~~~~---~~~~~~----~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
.. .+. +..... ........++++++||++|.|+++++
T Consensus 172 ~~-~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 172 FD-ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp SC-HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred cc-HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 32 221 222221 11111234789999999999998843
No 156
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.90 E-value=4.2e-23 Score=158.35 Aligned_cols=158 Identities=19% Similarity=0.192 Sum_probs=111.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC--Ccc------c----------ccccceeEEEEEEc-----CeEEEEEEcCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE--VVS------T----------IPTIGFNVETVQYN-----NIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~--~~~------~----------~~t~~~~~~~~~~~-----~~~~~~~D~~g~ 71 (182)
.+..||+++|+.++|||||+++++... +.. . ..|+......+.+. ...+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 456899999999999999999997521 110 0 11222223344443 378999999999
Q ss_pred CCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCC
Q 030149 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNR 151 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 151 (182)
.++...+..+++.+|++|+|+|+++..+......|.... . .+.|+++|+||+|+.... .++..+.+.... ...
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~l-g~~ 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVL-GLD 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTS-CCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHhh-CCC
Confidence 999988888899999999999999887665555444332 2 478999999999997653 444333333221 112
Q ss_pred ccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 152 QWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 152 ~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
..+++++||++|.|++++++.+.+.+..
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhccc
Confidence 2348999999999999999999988754
No 157
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.90 E-value=2.9e-24 Score=160.64 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=103.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--CCcc--------------------------------cccccceeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG--EVVS--------------------------------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 60 (182)
.+.++|+++|++++|||||+++|+.. .+.. ...|+......+...+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 46789999999999999999999754 2211 1234445555666688
Q ss_pred eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHH---hhcccCC-CeEEEEeecCCCCCCC-C
Q 030149 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAIL---EEEELRG-AVVLIFANKQDLPGAL-D 135 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~---~~~~~~~-~~iivv~nK~Dl~~~~-~ 135 (182)
..+.+|||||++++...+..+++.+|++|+|+|+++ .+|+....|..+.. ......+ .|+++++||+|+.+.. +
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 999999999999999999999999999999999988 56664332221111 1111123 4689999999997631 1
Q ss_pred H---HH----HHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 136 D---AA----VTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 136 ~---~~----~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
. +. +.+.+.........++++++||++|.|+.++++
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 1 12 222222212222247899999999999986543
No 158
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.90 E-value=2.8e-23 Score=159.61 Aligned_cols=157 Identities=20% Similarity=0.172 Sum_probs=107.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC--Ccc------c----------ccccceeEEEEEEc-----CeEEEEEEcCCCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE--VVS------T----------IPTIGFNVETVQYN-----NIKFQVWDLGGQT 72 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~--~~~------~----------~~t~~~~~~~~~~~-----~~~~~~~D~~g~~ 72 (182)
+..||+++|+.++|||||+++|+... +.. . ..|+......+.+. ...+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 56799999999999999999997522 110 1 11222333445443 3789999999999
Q ss_pred CCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCc
Q 030149 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQ 152 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 152 (182)
++...+..+++.+|++|+|+|+++..+......|.... . .+.|+++|+||+|+.... .++..+.+.... ....
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~-~~~v~~ei~~~l-g~~~ 155 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAAD-PERVAEEIEDIV-GIDA 155 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHHT-CCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCccccc-HHHHHHHHHHHh-CCCc
Confidence 99999999999999999999998876665555444433 2 378999999999997653 333333332221 1122
Q ss_pred cEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 153 WAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 153 ~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
.+++++||++|.|++++++.+.+.+..
T Consensus 156 ~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 156 TDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp TTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred ceEEEeecccCCCchhHHHHHhhcCCC
Confidence 348999999999999999999988754
No 159
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.90 E-value=3.6e-25 Score=166.55 Aligned_cols=156 Identities=21% Similarity=0.185 Sum_probs=108.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cc--cccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TI--PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+.++|+++|++++|||||++++.+..+.. .. .|.......+.+++..+.+|||||++.+..++...+..+|++|+|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 467899999999999999999998654432 11 233333334445677899999999999999999889999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccc--c--CCccEEEEecccCCCChH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKI--K--NRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~S~~~~~gi~ 167 (182)
+|+++.... .....+... ...+.|+++++||+|+.... .+.+...+..... . ....+++++||++|.|++
T Consensus 82 Vda~~g~~~-qT~e~l~~~----~~~~vPiIVviNKiDl~~~~-~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 82 VAADDGVMP-QTIEAIQHA----KAAQVPVVVAVNKIDKPEAD-PDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EETTTBSCT-TTHHHHHHH----HHTTCCEEEEEECSSSSTTC-CCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred eecccCccH-HHHHHHHHH----HhcCceEEEEEEeccccccC-HHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 999874211 111222222 22478999999999996532 1122222111110 1 123689999999999999
Q ss_pred HHHHHHHHH
Q 030149 168 EGLDWLSNT 176 (182)
Q Consensus 168 ~l~~~l~~~ 176 (182)
++++.+...
T Consensus 156 eLle~I~~~ 164 (501)
T 1zo1_I 156 ELLDAILLQ 164 (501)
T ss_dssp THHHHTTTT
T ss_pred hhhhhhhhh
Confidence 999998653
No 160
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.90 E-value=8e-24 Score=160.14 Aligned_cols=152 Identities=18% Similarity=0.129 Sum_probs=102.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCC--cc--------------------------------cccccceeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEV--VS--------------------------------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~--~~--------------------------------~~~t~~~~~~~~~~~~ 60 (182)
...+||+++|++++|||||+++|+.... .. ...|.......+...+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 5679999999999999999999975411 00 1224445556666788
Q ss_pred eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHH-----HHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC
Q 030149 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVI-----AKDEFHAILEEEELRGAVVLIFANKQDLPGALD 135 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 135 (182)
..+.+|||||++++...+..++..+|++|+|+|+++..++.. .......+.... ...|+++|+||+|+.+...
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchH
Confidence 999999999999999999999999999999999988643322 112222222221 2356999999999975311
Q ss_pred --HHHHHHHh----ccccccCCccEEEEecccCCCChHH
Q 030149 136 --DAAVTEAL----ELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 136 --~~~~~~~~----~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
.+++.+.+ .........++++++||++|.|+++
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 12222222 1112222367899999999999985
No 161
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.6e-23 Score=161.78 Aligned_cols=153 Identities=18% Similarity=0.139 Sum_probs=104.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc----------------------------------cccccceeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS----------------------------------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~----------------------------------~~~t~~~~~~~~~~~~ 60 (182)
...++|+++|++++|||||+++|++..... ...|.......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457999999999999999999998653221 1224555566677788
Q ss_pred eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc---hHH--HHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC
Q 030149 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE---RLV--IAKDEFHAILEEEELRGAVVLIFANKQDLPGALD 135 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~--~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 135 (182)
..+.+|||||++.+...+..+++.+|++|+|+|+++.. ++. ............. ...|+++|+||+|+.+...
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTTCH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccchhH
Confidence 99999999999999999999999999999999997632 110 0111111222221 2356999999999975311
Q ss_pred --HHHHHHH----hccccccCCccEEEEecccCCCChHHH
Q 030149 136 --DAAVTEA----LELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 136 --~~~~~~~----~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
.+++... +.........++++++||++|.|+.++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1112222 221222223578999999999999876
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.90 E-value=3.9e-23 Score=153.40 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=110.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--------CCcc------------cccccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG--------EVVS------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~--------~~~~------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
.+.++|+++|++++|||||+++|.+. .+.. ...|.......+...+..+.+|||||++++
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 56799999999999999999999862 2211 112444444455557789999999999999
Q ss_pred cchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCCCC-HH----HHHHHhccccc
Q 030149 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPGALD-DA----AVTEALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~-~~----~~~~~~~~~~~ 148 (182)
...+..++..+|++|+|+|+++... .....++..... .+.| +++++||+|+..... .+ ++.+.+.....
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 8888888999999999999987653 333444443322 3677 899999999974211 11 12222222112
Q ss_pred cCCccEEEEecccCCCC------------------hHHHHHHHHHHHh
Q 030149 149 KNRQWAIFKTSAIKGEG------------------LFEGLDWLSNTLK 178 (182)
Q Consensus 149 ~~~~~~~~~~S~~~~~g------------------i~~l~~~l~~~~~ 178 (182)
.....+++++||++|.| +++|++.|.+.+.
T Consensus 164 ~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 164 PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 22346899999999987 7788887776654
No 163
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.89 E-value=1.7e-23 Score=151.78 Aligned_cols=121 Identities=21% Similarity=0.371 Sum_probs=92.1
Q ss_pred cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCC----------CcchHHHHHHHHHHHHhhcccCCCeEEEEeecC
Q 030149 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSS----------DTERLVIAKDEFHAILEEEELRGAVVLIFANKQ 128 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 128 (182)
....+.+|||+|++.++..|..++++++++|+|+|++ +..++.....|+..+.+.....+.|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 3578999999999999999999999999999999998 788999999999998876655789999999999
Q ss_pred CCCCC----CC-------------------HHHHHHHhccccc--------c---CCccEEEEecccCCCChHHHHHHHH
Q 030149 129 DLPGA----LD-------------------DAAVTEALELHKI--------K---NRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 129 Dl~~~----~~-------------------~~~~~~~~~~~~~--------~---~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
|+.+. .. .++..+.....+. . ...+.+++|||++++||+++|+.+.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 98321 00 1111111111100 0 2345579999999999999999998
Q ss_pred HHHhh
Q 030149 175 NTLKS 179 (182)
Q Consensus 175 ~~~~~ 179 (182)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
No 164
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.89 E-value=4.4e-23 Score=143.10 Aligned_cols=165 Identities=13% Similarity=0.060 Sum_probs=101.3
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-c----ccccceeEEEEEEcCeEEEEEEcCCCCC-----------Ccc
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-T----IPTIGFNVETVQYNNIKFQVWDLGGQTS-----------IRP 76 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~-----------~~~ 76 (182)
.....++|+++|++|+|||||++++++..+.. . ..|.......+.+.+..+.+|||||... +..
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 34677999999999999999999999877644 2 2244456666777899999999999542 334
Q ss_pred hhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcc-cCCCeEEEEeecCCCCCCCCHHHHHHHh---ccccccCCc
Q 030149 77 YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEE-LRGAVVLIFANKQDLPGALDDAAVTEAL---ELHKIKNRQ 152 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~ 152 (182)
....+.+.+|++|+|+|+++.... ...++..+..... ....|+++|+||+|+.+....++..... ........+
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~ 182 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG 182 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence 445566789999999998765432 2233333322211 1246899999999986543332111100 001111122
Q ss_pred cEEEEecccC-----CCChHHHHHHHHHHHhh
Q 030149 153 WAIFKTSAIK-----GEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 153 ~~~~~~S~~~-----~~gi~~l~~~l~~~~~~ 179 (182)
..++.++... ..++.++++.+.+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 183 DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 2366665553 36899999998888765
No 165
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.89 E-value=9e-24 Score=158.92 Aligned_cols=155 Identities=23% Similarity=0.255 Sum_probs=101.0
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCccccccccee----EEEEEEcCeEEEEEEcCC--------CCCCcchhhh
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN----VETVQYNNIKFQVWDLGG--------QTSIRPYWRC 80 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~D~~g--------~~~~~~~~~~ 80 (182)
..++..+|+++|.+|+|||||+|++.+..+....++.+.+ ...+.+.+..+.+||||| ++.+...+..
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 3466789999999999999999999988766544444444 333344678999999999 4455566777
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
+++.+|++|+|+|..+.. .....++...+.. .++|+++|+||+|+.+.. ... ....... ....+++||
T Consensus 99 ~~~~ad~il~VvD~~~~~--~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~----~e~~~lg-~~~~~~iSA 166 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGV--TAADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANI----YDFYSLG-FGEPYPISG 166 (456)
T ss_dssp HHHHCSEEEEEEESSSCS--CHHHHHHHHHHTT---CCSCEEEEEECC---------------CCSGGGS-SSSEEECCT
T ss_pred hHhhCCEEEEEEeCCCCC--ChHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhH----HHHHHcC-CCceEEeec
Confidence 888999999999986643 3334455555443 579999999999986321 111 1111111 113679999
Q ss_pred cCCCChHHHHHHHHHHHhh
Q 030149 161 IKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~ 179 (182)
++|.|+.++++.+.+.+..
T Consensus 167 ~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 167 THGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp TTCTTHHHHHHHHHTTGGG
T ss_pred ccccchHHHHHHHHhhccc
Confidence 9999999999999887653
No 166
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.89 E-value=4.7e-23 Score=152.48 Aligned_cols=158 Identities=16% Similarity=0.104 Sum_probs=108.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC-------CCcc------------cccccceeEEEEEEcCeEEEEEEcCCCCCCcc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG-------EVVS------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~-------~~~~------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 76 (182)
+.++|+++|++++|||||+++|.+. .+.. ...|++.....+...+..+.+|||||++++..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 4689999999999999999999763 1110 11233333334445678999999999999888
Q ss_pred hhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCCCCH-H----HHHHHhccccccC
Q 030149 77 YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPGALDD-A----AVTEALELHKIKN 150 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~ 150 (182)
.+..++..+|++|+|+|+++.... .....+..+ .. .+.| +++++||+|+.+.... + ++.+.+.......
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~-qt~e~l~~~-~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMP-QTREHLLLA-RQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHH-HH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCH-HHHHHHHHH-HH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 888889999999999999886432 223333322 22 3677 7899999999742111 1 2222222222222
Q ss_pred CccEEEEecccCCCC----------hHHHHHHHHHHHh
Q 030149 151 RQWAIFKTSAIKGEG----------LFEGLDWLSNTLK 178 (182)
Q Consensus 151 ~~~~~~~~S~~~~~g----------i~~l~~~l~~~~~ 178 (182)
..++++++||++|.| +++|++.|.+.+.
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 346899999999764 8899999887664
No 167
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.88 E-value=3.1e-23 Score=146.57 Aligned_cols=158 Identities=15% Similarity=0.206 Sum_probs=88.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc--c-------ccccceeEEEEEE--cC--eEEEEEEcCCCCCC-------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--T-------IPTIGFNVETVQY--NN--IKFQVWDLGGQTSI------- 74 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~-------~~t~~~~~~~~~~--~~--~~~~~~D~~g~~~~------- 74 (182)
...++|+++|.+|+|||||+|++++..... + .+|.+........ .+ ..+.+|||||..+.
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 457999999999999999999987665433 2 5566655555544 22 58999999997422
Q ss_pred cchh-------hhcc-------------CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC
Q 030149 75 RPYW-------RCYF-------------PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134 (182)
Q Consensus 75 ~~~~-------~~~~-------------~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 134 (182)
..+. ..++ ..+|+++++++............++..+ .. ++|+++|+||+|+..+.
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l-~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH-TT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH-hc----cCCEEEEEeccCCCCHH
Confidence 2221 1111 2378999999876532222222333332 22 79999999999986432
Q ss_pred CHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 135 DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
......+.+.. .....+++++++|+.+++|++++++.|.+.++
T Consensus 161 e~~~~~~~i~~-~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 161 ECQQFKKQIMK-EIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHH-HHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHH-HHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 22222222221 12234567999999999999999999887653
No 168
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.88 E-value=9.9e-23 Score=149.44 Aligned_cols=132 Identities=27% Similarity=0.332 Sum_probs=100.8
Q ss_pred ccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCC----------cchHHHHHHHHHHHHhhcccC
Q 030149 48 TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSD----------TERLVIAKDEFHAILEEEELR 117 (182)
Q Consensus 48 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (182)
|+|.....+.+++..+.+|||+|++.++..|..++++++++|+|+|+++ ..++.....|+..+.......
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 3344555566778999999999999999999999999999999999999 889999999999998765557
Q ss_pred CCeEEEEeecCCCCCC-----C------------------------C---HHHHHHHh----cccc----ccCCccEEEE
Q 030149 118 GAVVLIFANKQDLPGA-----L------------------------D---DAAVTEAL----ELHK----IKNRQWAIFK 157 (182)
Q Consensus 118 ~~~iivv~nK~Dl~~~-----~------------------------~---~~~~~~~~----~~~~----~~~~~~~~~~ 157 (182)
+.|+++|+||+|+.+. . . .++..... .... .....+.+++
T Consensus 284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~ 363 (402)
T 1azs_C 284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 363 (402)
T ss_dssp SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence 8999999999997321 0 0 11111111 1100 0113566889
Q ss_pred ecccCCCChHHHHHHHHHHHhh
Q 030149 158 TSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
|||++++||+++|+.+.+.+..
T Consensus 364 TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 364 TCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeecCcCHHHHHHHHHHHHHH
Confidence 9999999999999999887754
No 169
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.88 E-value=6.3e-24 Score=159.88 Aligned_cols=159 Identities=14% Similarity=0.173 Sum_probs=92.4
Q ss_pred hhcCCcccEEEEEcCCCCCHHHHHHHHhcC--CCc--------------------------------ccccccceeEEEE
Q 030149 11 SLFGNKEARILVLGLDNAGKTTILYRLQMG--EVV--------------------------------STIPTIGFNVETV 56 (182)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKtsli~~~~~~--~~~--------------------------------~~~~t~~~~~~~~ 56 (182)
.....+.++|+++|++++|||||+++|+.. .+. ....|++.....+
T Consensus 37 ~~~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~ 116 (467)
T 1r5b_A 37 DMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYF 116 (467)
T ss_dssp HHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEE
T ss_pred hhcCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEE
Confidence 334567799999999999999999999642 111 0123445555556
Q ss_pred EEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc---hHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCC
Q 030149 57 QYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE---RLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPG 132 (182)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~ 132 (182)
...+..+.+|||||++++...+...+..+|++|+|+|+++.. +|+...++...+. .....+.| +++++||+|+..
T Consensus 117 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~-~~~~~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 117 ETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAV-LARTQGINHLVVVINKMDEPS 195 (467)
T ss_dssp ECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHH-HHHHTTCSSEEEEEECTTSTT
T ss_pred ecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHH-HHHHcCCCEEEEEEECccCCC
Confidence 667899999999999999998888899999999999998762 2221111111111 11224566 999999999964
Q ss_pred CC-CHH---H----HHHHhccc-ccc-CCccEEEEecccCCCChHHHH
Q 030149 133 AL-DDA---A----VTEALELH-KIK-NRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 133 ~~-~~~---~----~~~~~~~~-~~~-~~~~~~~~~S~~~~~gi~~l~ 170 (182)
.. +.+ . +...+... ... ...++++++||++|.|+.+++
T Consensus 196 ~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 196 VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 22 221 1 22222111 111 125789999999999998765
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.87 E-value=3e-22 Score=150.50 Aligned_cols=150 Identities=14% Similarity=0.151 Sum_probs=103.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--CCcc--------------------------------cccccceeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG--EVVS--------------------------------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 60 (182)
.+.++|+++|++++|||||+++|++. .+.. ...|++.....+...+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45789999999999999999999753 1110 2235555566677788
Q ss_pred eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc---hHH---HHHHHHHHHHhhcccCCC-eEEEEeecCCCCCC
Q 030149 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE---RLV---IAKDEFHAILEEEELRGA-VVLIFANKQDLPGA 133 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-~iivv~nK~Dl~~~ 133 (182)
..+.+|||||++++...+..++..+|++|+|+|+++.. +|+ .....+... .. .+. ++++++||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~---~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT---LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH---TTCCEEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HH---cCCCeEEEEEEccccccC
Confidence 99999999999999999999999999999999997652 111 222222221 22 345 49999999999732
Q ss_pred CCHH---HHHHHh----ccccccCCccEEEEecccCCCChHHH
Q 030149 134 LDDA---AVTEAL----ELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 134 ~~~~---~~~~~~----~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+.+ ++...+ .........++++++||++|.|+.++
T Consensus 161 -~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 161 -DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred -CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 121 222222 11111112467999999999998754
No 171
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.87 E-value=1.6e-22 Score=144.60 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=100.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-------cccc----------------------cce--------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-------TIPT----------------------IGF-------------- 51 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-------~~~t----------------------~~~-------------- 51 (182)
...++|+|+|.+|+|||||+|++++..+.+ ..|+ ...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 456899999999999999999999887642 1222 000
Q ss_pred -------e----EEEEEE-cCeEEEEEEcCCCCC-------------CcchhhhccCCCCeEE-EEEeCCCcchHHHHHH
Q 030149 52 -------N----VETVQY-NNIKFQVWDLGGQTS-------------IRPYWRCYFPNTQAII-YVVDSSDTERLVIAKD 105 (182)
Q Consensus 52 -------~----~~~~~~-~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~~ 105 (182)
. ...+.. ....+.+|||||... +......+++.++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 0 001111 247899999999642 3345667788888766 7999977644333222
Q ss_pred HHHHHHhhcccCCCeEEEEeecCCCCCCCC-HHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHH
Q 030149 106 EFHAILEEEELRGAVVLIFANKQDLPGALD-DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNT 176 (182)
Q Consensus 106 ~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~ 176 (182)
++..+ ...+.|+++|+||+|+.+... ..+..+. ..........+++++||++|.|++++++.+.+.
T Consensus 184 ~~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 184 IAKEV----DPQGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHH----CTTCSSEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHh----CCCCCeEEEEEEccccCCCCchHHHHHhC-CcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 22222 235789999999999975432 1222111 001111123479999999999999999998764
No 172
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.87 E-value=6.8e-24 Score=163.43 Aligned_cols=151 Identities=20% Similarity=0.204 Sum_probs=82.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCc----------------------------------ccccccceeEEEEEEc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV----------------------------------STIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~----------------------------------~~~~t~~~~~~~~~~~ 59 (182)
....++|+++|++++|||||+++|+..... ....|.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 356789999999999999999999632100 0111333444455556
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc---hH--HHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE---RL--VIAKDEFHAILEEEELRGAV-VLIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~ 133 (182)
+..+.||||||++++...+...+..+|++|+|+|+++.. ++ .........+... .+.| +|+|+||+|+...
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMSW 330 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGTT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccccc
Confidence 789999999999999988888899999999999997532 11 1111111122222 3455 9999999999752
Q ss_pred CC--HHHHHHH----h-ccccccCCccEEEEecccCCCChH
Q 030149 134 LD--DAAVTEA----L-ELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 134 ~~--~~~~~~~----~-~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
.. .+.+... + .........++++++||++|.|+.
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 11 1122222 2 112222235689999999999998
No 173
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.87 E-value=3.9e-21 Score=146.32 Aligned_cols=114 Identities=19% Similarity=0.216 Sum_probs=84.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC--Cc-------------c----------cccccceeEEEEEEcCeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE--VV-------------S----------TIPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~--~~-------------~----------~~~t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.+..+|+++|++|+|||||+++|+... +. . ...|.......+.+.+..+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 467899999999999999999998531 10 0 0113334455677789999999999
Q ss_pred CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
|+.++...+..+++.+|++|+|+|+.+.... +...++......+.|+++++||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-----~t~~~~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-----RTRKLMEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-----HHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchH-----HHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence 9999998888899999999999999876421 2222222223357899999999999765
No 174
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.86 E-value=5.4e-21 Score=149.78 Aligned_cols=114 Identities=22% Similarity=0.161 Sum_probs=87.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--CC------------c-------ccccccceeEEEEEEcCeEEEEEEcCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG--EV------------V-------STIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~--~~------------~-------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
.+..+|+++|++|+|||||+++++.. .+ . .+..|+......+.+.+..+++|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 56799999999999999999999731 11 0 123455666667778899999999999999
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
+...+..+++.+|++|+|+|+++..+...... |..... .+.|+++|+||+|+...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHH-HHHHHH----cCCCEEEEEECCCcccC
Confidence 99999999999999999999998776555433 333322 47999999999999754
No 175
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.86 E-value=1.6e-21 Score=156.94 Aligned_cols=159 Identities=17% Similarity=0.150 Sum_probs=107.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC-------Ccc--------ccc----ccceeEEEEEEcCeEEEEEEcCCCCCCc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE-------VVS--------TIP----TIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~-------~~~--------~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
.+.++|+++|++++|||||+++|.+.. +.. ... |+......+...+..+.+|||||++++.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 566999999999999999999997631 100 111 2222233445567899999999999998
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCCCCH-----HHHHHHhcccccc
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPGALDD-----AAVTEALELHKIK 149 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~ 149 (182)
..+..++..+|++|+|+|+++.... ....++..+.. .+.| +++++||+|+.+.... +++.+.+......
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 8888889999999999999876432 23334433322 2577 7999999999752111 1122222222222
Q ss_pred CCccEEEEecccCC--------CChHHHHHHHHHHHh
Q 030149 150 NRQWAIFKTSAIKG--------EGLFEGLDWLSNTLK 178 (182)
Q Consensus 150 ~~~~~~~~~S~~~~--------~gi~~l~~~l~~~~~ 178 (182)
...++++++||++| .|++++++.|.+.+.
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 23578999999999 468888888877553
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.85 E-value=3.9e-21 Score=130.70 Aligned_cols=162 Identities=17% Similarity=0.118 Sum_probs=98.2
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCc-ccccccceeE--EEEEEcCeEEEEEEcCCCCCC----------cchh
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVV-STIPTIGFNV--ETVQYNNIKFQVWDLGGQTSI----------RPYW 78 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~~~----------~~~~ 78 (182)
+...+..+|+++|++|||||||++++.+..+. .+.|+.+... ..+.+.+ .+.+|||||.... ....
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 44467789999999999999999999987732 3455555332 2333334 7889999997532 1112
Q ss_pred hhcc---CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHH-HHHHhccccccCCccE
Q 030149 79 RCYF---PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA-VTEALELHKIKNRQWA 154 (182)
Q Consensus 79 ~~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~ 154 (182)
..++ ..++.+++++|+.++.+.... .+...+. ..+.|+++++||+|+.+...... ..............+.
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~---~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~ 174 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAV---DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ 174 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHH---HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHH---HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence 2223 578999999999887654321 1122222 24689999999999865322111 1111111111122467
Q ss_pred EEEecccCCCChHHHHHHHHHHHhh
Q 030149 155 IFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 155 ~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
++++|++++.|++++++.|.+.+.+
T Consensus 175 ~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 175 VETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred eEEEeecCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999887654
No 177
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.85 E-value=2.7e-20 Score=145.90 Aligned_cols=115 Identities=20% Similarity=0.198 Sum_probs=87.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc--CCCc-------------------ccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQM--GEVV-------------------STIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
..+..+|+++|++|+|||||+++++. +.+. ....|.......+.+.+..+++|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 46779999999999999999999984 2211 01224445566677789999999999999
Q ss_pred CCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
++...+..+++.+|++|+|+|+++..+..... .|..+.. .+.|+++|+||+|+...
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~-~~~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTET-VWRQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHH-HHHHHHH----cCCCEEEEEECCCcccc
Confidence 99999999999999999999998876655443 3333332 47899999999999764
No 178
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.84 E-value=2.3e-20 Score=131.09 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=84.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccc----ccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhcc--------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF-------- 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~-------- 82 (182)
.+.++|+++|++|+|||||++++.+.......+ |.......+.+.+..+.+|||||+.++......++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 478999999999999999999999887533222 44556666777899999999999887655443333
Q ss_pred -CCCCeEEEEEeCCCcchHHHH-HHHHHHHHhhccc-CCCeEEEEeecCCCCC
Q 030149 83 -PNTQAIIYVVDSSDTERLVIA-KDEFHAILEEEEL-RGAVVLIFANKQDLPG 132 (182)
Q Consensus 83 -~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~ 132 (182)
..+|++++|+|++... +... ..++..+...... ...|+++|+||+|+..
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 2689999999987654 3333 3455444433221 1258999999999953
No 179
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.84 E-value=2e-20 Score=146.17 Aligned_cols=112 Identities=14% Similarity=0.134 Sum_probs=84.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCc--------------c-------cccccceeEEEEEEcCeEEEEEEcCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVV--------------S-------TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
.+..+|+++|+.|+|||||++++++.... . ...+.......+.+....+++|||||+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 56789999999999999999999843221 0 01133345556667889999999999999
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
+...+..+++.+|++++|+|+.+..... ...++..... .+.|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence 9888888999999999999987654322 2234433332 478999999999987
No 180
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.84 E-value=1.3e-20 Score=147.80 Aligned_cols=161 Identities=23% Similarity=0.247 Sum_probs=105.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc--cccccc-eeE--------EEEEE-------------------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIG-FNV--------ETVQY------------------------- 58 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~t~~-~~~--------~~~~~------------------------- 58 (182)
...++|+|+|.+|+|||||+|+|++....+ ..|+.. ... .+..+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 567999999999999999999999887654 233221 000 01111
Q ss_pred ---------------------cC----eEEEEEEcCCCCC---CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHH
Q 030149 59 ---------------------NN----IKFQVWDLGGQTS---IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI 110 (182)
Q Consensus 59 ---------------------~~----~~~~~~D~~g~~~---~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 110 (182)
.. ..+.+|||||... ....+..+++.+|++|+|+|++++.+......+ ...
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l-~~~ 225 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYL-ENY 225 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHH-HHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHH-HHH
Confidence 00 4699999999543 445666788899999999999888766554333 222
Q ss_pred HhhcccCCCeEEEEeecCCCCCCC-----CHHH-------HHHH----hccccc----cCCccEEEEeccc---------
Q 030149 111 LEEEELRGAVVLIFANKQDLPGAL-----DDAA-------VTEA----LELHKI----KNRQWAIFKTSAI--------- 161 (182)
Q Consensus 111 ~~~~~~~~~~iivv~nK~Dl~~~~-----~~~~-------~~~~----~~~~~~----~~~~~~~~~~S~~--------- 161 (182)
+. ..+.|+++|+||+|+.... +.++ +... +..... .....+++++||+
T Consensus 226 l~---~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~ 302 (695)
T 2j69_A 226 IK---GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN 302 (695)
T ss_dssp TT---TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred HH---hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence 22 2367899999999986431 1111 2111 111100 0123469999999
Q ss_pred -----CCCChHHHHHHHHHHHhh
Q 030149 162 -----KGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 162 -----~~~gi~~l~~~l~~~~~~ 179 (182)
++.|++++++.+.+.+..
T Consensus 303 ~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 303 PQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp TTCCCTTSSHHHHHHHHHHHHHH
T ss_pred chhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887754
No 181
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.84 E-value=3.2e-21 Score=140.82 Aligned_cols=159 Identities=16% Similarity=0.237 Sum_probs=81.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc--c--------ccccceeEEEEEE--cC--eEEEEEEcCCC-------C
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS--T--------IPTIGFNVETVQY--NN--IKFQVWDLGGQ-------T 72 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~--------~~t~~~~~~~~~~--~~--~~~~~~D~~g~-------~ 72 (182)
....++|+|+|++|+|||||++++.+..... + .+|.+........ .+ ..+.+|||||. +
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence 3567899999999999999999987654322 1 1344433333322 33 47899999998 5
Q ss_pred CCcchhh-------hccC-------------CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 73 SIRPYWR-------CYFP-------------NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 73 ~~~~~~~-------~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
.+..++. .+++ .+|+++|+++.. ..++......+...+ ..+.|+|+|+||+|+..
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLT 188 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCC
Confidence 5555543 3332 235677777642 233443433222222 25789999999999974
Q ss_pred CCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
........... .......+++++++||+++.+ ++.+..+.+.+.+
T Consensus 189 ~~ev~~~k~~i-~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 189 LKERERLKKRI-LDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp HHHHHHHHHHH-HHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 32222111122 122334567899999999998 7778777776654
No 182
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.83 E-value=1e-19 Score=142.86 Aligned_cols=114 Identities=17% Similarity=0.058 Sum_probs=85.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC--Cc-------------------ccccccceeEEEEEEcC-------eEEEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE--VV-------------------STIPTIGFNVETVQYNN-------IKFQVW 66 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~--~~-------------------~~~~t~~~~~~~~~~~~-------~~~~~~ 66 (182)
.+..+|+|+|+.|+|||||+++|+... +. ....|+......+.+.+ ..+++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 567899999999999999999996421 11 01123444445566655 899999
Q ss_pred EcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 67 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 67 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
||||+.+|...+..+++.+|++|+|+|+++....... ..|.... ..+.|+++++||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~~~----~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQAN----KYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHHHH----HcCCCEEEEEeCCCcccc
Confidence 9999999999999999999999999999876543332 3333332 247899999999998654
No 183
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.83 E-value=2e-20 Score=134.68 Aligned_cols=160 Identities=20% Similarity=0.218 Sum_probs=97.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccc-------cccc-ceeE---------------------------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST-------IPTI-GFNV--------------------------------- 53 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~-------~~t~-~~~~--------------------------------- 53 (182)
...++|+|+|++|+|||||+|++++..+.+. .|+. ....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 4568999999999999999999998876221 1100 0000
Q ss_pred -------------------EEEEE---cCeEEEEEEcCCCCC-------------CcchhhhccCCCCeEEEEEeCCCcc
Q 030149 54 -------------------ETVQY---NNIKFQVWDLGGQTS-------------IRPYWRCYFPNTQAIIYVVDSSDTE 98 (182)
Q Consensus 54 -------------------~~~~~---~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
..+.+ ....+.+|||||... +......+++.+|++++|+|..+..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00111 346899999999753 3345567788999999999974332
Q ss_pred hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccc--cccCCccEEEEecccC---CCChHHHHHHH
Q 030149 99 RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELH--KIKNRQWAIFKTSAIK---GEGLFEGLDWL 173 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~S~~~---~~gi~~l~~~l 173 (182)
........+ .......+.|+++|+||+|+...... ..+..... .......++..+|+.+ +.|+.++++.+
T Consensus 182 ~~~~~~~~i---~~~~~~~~~~~i~v~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~ 256 (315)
T 1jwy_B 182 LANSDALQL---AKEVDPEGKRTIGVITKLDLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSE 256 (315)
T ss_dssp STTCSHHHH---HHHHCSSCSSEEEEEECTTSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred hhhhHHHHH---HHHhCCCCCcEEEEEcCcccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence 111111112 22222357899999999999754331 11112111 1112223345555566 88999999998
Q ss_pred HHHHhh
Q 030149 174 SNTLKS 179 (182)
Q Consensus 174 ~~~~~~ 179 (182)
.+.+..
T Consensus 257 ~~~~~~ 262 (315)
T 1jwy_B 257 ILYFKN 262 (315)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 887764
No 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.83 E-value=1.8e-19 Score=133.24 Aligned_cols=157 Identities=23% Similarity=0.274 Sum_probs=108.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcC-eEEEEEEcCCCCCC----cch---hhhccCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQTSI----RPY---WRCYFPNTQ 86 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~----~~~---~~~~~~~~d 86 (182)
..|+++|++|||||||++++.+..... ...|...+...+...+ ..+.+||+||..+. ..+ ....++.++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 458999999999999999998765321 1224445555566654 88999999997431 111 223356799
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHhhc-ccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 87 AIIYVVDSSDTERLVIAKDEFHAILEEE-ELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
.+++++|++ .+++..+..+..+..... .....|.++++||+|+......+.+.+.+ ...+.+++.+||++++|
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l-----~~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADAL-----AREGLAVLPVSALTGAG 311 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHH-----HTTTSCEEECCTTTCTT
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHH-----HhcCCeEEEEECCCccC
Confidence 999999998 666766666666554431 12358899999999987431111121211 22356799999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 030149 166 LFEGLDWLSNTLKSI 180 (182)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (182)
++++++.|.+.+.+.
T Consensus 312 i~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 312 LPALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998764
No 185
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.82 E-value=2.1e-19 Score=137.36 Aligned_cols=114 Identities=16% Similarity=0.189 Sum_probs=87.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC------------------CCcc-------cccccceeEEEEEEcCeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG------------------EVVS-------TIPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~------------------~~~~-------~~~t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.+..||+|+|+.++|||||..+|+.. .... +.-|+......+.++++.++++|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 46789999999999999999999521 1111 1225556677888999999999999
Q ss_pred CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
|+.+|.......++-+|++|+|+|+...-.- .....|..... .+.|+++++||+|....
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~-qT~~v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEA-QTRKLMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCH-HHHHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCccc-ccHHHHHHHHH----hCCceEEEEecccchhc
Confidence 9999999999999999999999999776332 22334444433 48999999999998654
No 186
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.81 E-value=9.1e-19 Score=123.42 Aligned_cols=118 Identities=15% Similarity=0.066 Sum_probs=81.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccc----ccceeEEEEEEcCeEEEEEEcCCCCCCcchhh-------h--c
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR-------C--Y 81 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-------~--~ 81 (182)
.+.++|+++|.+|+|||||+|++++..+....+ |.......+...+..+.+|||||..++..... . .
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 467999999999999999999999887643222 33344455666889999999999876543221 1 1
Q ss_pred cCCCCeEEEEEeCCCcchHHHH-HHHHHHHHhhcc-cCCCeEEEEeecCCCCCC
Q 030149 82 FPNTQAIIYVVDSSDTERLVIA-KDEFHAILEEEE-LRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~ 133 (182)
.+.+|++++|+|++.. ++... ..++..+..... ....|+++|+||+|+..+
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 3468999999998653 23332 345544433322 112699999999999654
No 187
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.80 E-value=9.9e-20 Score=133.26 Aligned_cols=151 Identities=16% Similarity=0.196 Sum_probs=98.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCccccc-ccc--e-----------------------------------------
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIP-TIG--F----------------------------------------- 51 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~-t~~--~----------------------------------------- 51 (182)
.-.+|+|+|++|||||||+|++.+..+.+... +.. .
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 34599999999999999999999977633111 000 0
Q ss_pred -----------eEEEEEE---cCeEEEEEEcCCCCCC-------------cchhhhccCCCCeEEEEEeCCCcchHHHHH
Q 030149 52 -----------NVETVQY---NNIKFQVWDLGGQTSI-------------RPYWRCYFPNTQAIIYVVDSSDTERLVIAK 104 (182)
Q Consensus 52 -----------~~~~~~~---~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 104 (182)
....+.. ....+.+|||||.... ..+...+++++|++|+|+|..+.+...
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--- 189 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--- 189 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG---
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC---
Confidence 0001111 2457999999997765 556678889999999999876544322
Q ss_pred HHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHHHHHHH
Q 030149 105 DEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 105 ~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
..+..+.......+.|+++|+||+|+.++... .+..+ ......+.+|+++|+.++.++++.+...
T Consensus 190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~----~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 190 SDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILE----GRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp CHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHT----TSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred HHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHc----CccccccCCeEEEEECChHHhccCCCHH
Confidence 12222333444457899999999999754321 22111 1223445679999999988887665443
No 188
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.78 E-value=3.7e-19 Score=129.89 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=95.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC------CCcc--ccc--cc-------------------ceeEE-----------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG------EVVS--TIP--TI-------------------GFNVE----------- 54 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~------~~~~--~~~--t~-------------------~~~~~----------- 54 (182)
.+..+|+++|.+|+|||||++++... +... ..| +. +....
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 56789999999999999999998522 1100 000 00 00000
Q ss_pred ---------EEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEe
Q 030149 55 ---------TVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFA 125 (182)
Q Consensus 55 ---------~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~ 125 (182)
.+...+..+.++||||... ........+|++++|+|....+....+. . .....|+++|+
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~--~~~~~p~ivVl 224 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK-------K--GVLELADIVVV 224 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC-------T--TSGGGCSEEEE
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH-------H--hHhhcCCEEEE
Confidence 0012467899999999543 2333458899999999987655432211 1 11246889999
Q ss_pred ecCCCCCCCCHHHHHHHhcc----cccc--CCccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 126 NKQDLPGALDDAAVTEALEL----HKIK--NRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 126 nK~Dl~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
||+|+............+.. .... ..+.+++++||++|+|++++++.|.+.+..
T Consensus 225 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 225 NKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp ECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred ECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 99998643222222222211 1101 124579999999999999999999988754
No 189
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.78 E-value=8e-20 Score=133.35 Aligned_cols=155 Identities=19% Similarity=0.165 Sum_probs=95.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-------ccccc--------------------------------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-------TIPTI-------------------------------------- 49 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-------~~~t~-------------------------------------- 49 (182)
...++|+|+|.+|+|||||+|++.+.++.+ ..|+.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 346899999999999999999999887642 11220
Q ss_pred -----cee----EEEEEE-cCeEEEEEEcCCCCC-------------CcchhhhccCCCC-eEEEEEeCCCcchHHHHHH
Q 030149 50 -----GFN----VETVQY-NNIKFQVWDLGGQTS-------------IRPYWRCYFPNTQ-AIIYVVDSSDTERLVIAKD 105 (182)
Q Consensus 50 -----~~~----~~~~~~-~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~ 105 (182)
+.. ...+.. ....+.+|||||... +..+...++..++ ++++++|++....-....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~- 187 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL- 187 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH-
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH-
Confidence 000 011111 247899999999532 2335556666655 555566665432211111
Q ss_pred HHHHHHhhcccCCCeEEEEeecCCCCCCCC-HHHHHHHhccccccCCc-cEEEEecccCCCChHHHHHHHHH
Q 030149 106 EFHAILEEEELRGAVVLIFANKQDLPGALD-DAAVTEALELHKIKNRQ-WAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 106 ~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
.++......+.|+++|+||+|+.+... .....+ ........+ .+++++||+++.|++++++.+.+
T Consensus 188 ---~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~--~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 188 ---KVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp ---HHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHT--TCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ---HHHHHhCcCCCceEEEeccccccCcchhHHHHHh--CCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 222333335789999999999975432 122211 111111123 46899999999999999998876
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.77 E-value=2.9e-19 Score=131.79 Aligned_cols=80 Identities=28% Similarity=0.255 Sum_probs=47.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCc-ccc--cccceeEEEEE---------------------Ec---CeEEEEEEcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVV-STI--PTIGFNVETVQ---------------------YN---NIKFQVWDLGG 70 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~-~~~--~t~~~~~~~~~---------------------~~---~~~~~~~D~~g 70 (182)
++|+++|.+|+|||||+|++.+.... ... .|...+..... +. ...+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987632 111 13333322211 12 36799999999
Q ss_pred CCC----Ccchh---hhccCCCCeEEEEEeCCCc
Q 030149 71 QTS----IRPYW---RCYFPNTQAIIYVVDSSDT 97 (182)
Q Consensus 71 ~~~----~~~~~---~~~~~~~d~ii~v~d~~~~ 97 (182)
... ...+. ..+++.+|++++|+|+.+.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 743 22222 2457899999999999875
No 191
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.76 E-value=4e-19 Score=138.26 Aligned_cols=158 Identities=22% Similarity=0.248 Sum_probs=111.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc--CCC------------ccc-------ccccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM--GEV------------VST-------IPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~--~~~------------~~~-------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
+..||+|+|+.++|||||..+|+. +.. ..+ .-|+......+.++++.++++||||+.+|
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 357899999999999999999952 110 101 11445556667789999999999999999
Q ss_pred cchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHH---HHHHhccc-----
Q 030149 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA---VTEALELH----- 146 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~---~~~~~~~~----- 146 (182)
.......++-+|++|+|+|+...-.- .....|..... .+.|.++++||+|......... +.+.+...
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~-qT~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~ 155 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQA-QTRILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ 155 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCS-HHHHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcH-HHHHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccc
Confidence 99999999999999999999765321 12344444444 3789999999999865533221 11111100
Q ss_pred ---------------------------------------------------cccCCccEEEEecccCCCChHHHHHHHHH
Q 030149 147 ---------------------------------------------------KIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 147 ---------------------------------------------------~~~~~~~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
.....-.|++..||+++.|++.|++.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~ 235 (638)
T 3j25_A 156 KVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITN 235 (638)
T ss_dssp CCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHH
T ss_pred eeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhc
Confidence 00112357889999999999999999987
Q ss_pred HHh
Q 030149 176 TLK 178 (182)
Q Consensus 176 ~~~ 178 (182)
.++
T Consensus 236 ~~p 238 (638)
T 3j25_A 236 KFY 238 (638)
T ss_dssp SCC
T ss_pred ccc
Confidence 654
No 192
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.75 E-value=5.8e-18 Score=123.13 Aligned_cols=151 Identities=17% Similarity=0.098 Sum_probs=88.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC------CCc--ccccccc--------------------eeE-------E----E-
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG------EVV--STIPTIG--------------------FNV-------E----T- 55 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~------~~~--~~~~t~~--------------------~~~-------~----~- 55 (182)
....|+++|.+|||||||+|++.+. +.. ...|+.. ... . .
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 4689999999999999999999851 110 0111000 000 0 0
Q ss_pred ---------EEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEee
Q 030149 56 ---------VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFAN 126 (182)
Q Consensus 56 ---------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~n 126 (182)
+...+..+.++||+|.... .......+|++++|+|+..++....... .+ ...|.++|+|
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlN 220 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVT 220 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEEC
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEe
Confidence 0125678999999995422 2334678999999999976532211110 11 2457899999
Q ss_pred cCCCCCCCCH----HHHHHHhccccc--cCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 127 KQDLPGALDD----AAVTEALELHKI--KNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 127 K~Dl~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
|+|+.+.... ..+...+..... .....+++++||++|+|++++++.|.+.+.
T Consensus 221 K~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 221 KSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 9998632111 112221211111 011357899999999999999999988764
No 193
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.74 E-value=1.1e-18 Score=124.57 Aligned_cols=133 Identities=20% Similarity=0.103 Sum_probs=98.3
Q ss_pred HHHHHHhcCCCc-c-cccccceeEEEEEE-cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc-hHHHHHHHH
Q 030149 32 TILYRLQMGEVV-S-TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE-RLVIAKDEF 107 (182)
Q Consensus 32 sli~~~~~~~~~-~-~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~ 107 (182)
+++.++..+.+. . +.||++.... +.. .+..+.+||+ ++.+..++..+++++|++|+|+|+++++ ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 577777777776 4 7889994433 333 2348999999 8999999999999999999999999987 677777777
Q ss_pred HHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 108 HAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 108 ~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
..+.. .+.|+++|+||+|+.+....++..+..... ... ++++++||++|.|++++|..+.
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~--~~~-~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIY--SGL-YPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH--TTT-SCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHH--hhh-CcEEEEECCCCcCHHHHHHHhc
Confidence 76533 479999999999997432111122211111 111 6799999999999999998764
No 194
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.74 E-value=2.5e-18 Score=117.72 Aligned_cols=151 Identities=17% Similarity=0.181 Sum_probs=93.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-------ccccc----------ceeEEEEE------------------Ec
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-------TIPTI----------GFNVETVQ------------------YN 59 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-------~~~t~----------~~~~~~~~------------------~~ 59 (182)
.+..+|+++|.+|+|||||++++....... ..+.. +.....+. ..
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 466899999999999999999997542110 00100 11111111 13
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHH
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDA 137 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~ 137 (182)
+..+.+|||+|+.... ..+....+.+++|+|+.+.... ... +... .+.|+++|+||+|+.+. ...+
T Consensus 108 ~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~-~~~~------~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 108 DCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEK-HPEI------FRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp TCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHH-CHHH------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhh-hhhh------hhcCCEEEEecccCCcchhhHHH
Confidence 4578899999952111 0111256889999998765321 111 1111 24788999999998532 2344
Q ss_pred HHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 138 AVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
+....+... ....+++++||++|.|+++++++|.+.+...
T Consensus 176 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 176 KMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 444443321 3456899999999999999999999887653
No 195
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.73 E-value=2.2e-18 Score=122.98 Aligned_cols=160 Identities=16% Similarity=0.200 Sum_probs=78.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC-CCcc-c--------ccccceeEEEEEE----cCeEEEEEEcCCC-------C
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMG-EVVS-T--------IPTIGFNVETVQY----NNIKFQVWDLGGQ-------T 72 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~-~~~~-~--------~~t~~~~~~~~~~----~~~~~~~~D~~g~-------~ 72 (182)
..-.++|+++|++|+|||||++++.+. .+.. . .++.......+.. ....+.+||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 356699999999999999999998765 3222 1 1222222222222 2468999999997 4
Q ss_pred CCcchhh-------hccC-------------CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 73 SIRPYWR-------CYFP-------------NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 73 ~~~~~~~-------~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
.+..+.. .+++ .+++++++.+.+. .+++.... .++.... ...++++|+||+|+..
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l~-~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAIH-NKVNIVPVIAKADTLT 169 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHHT-TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHHH-hcCCEEEEEEeCCCCC
Confidence 4444332 2221 2345666666432 12333321 2222222 3679999999999864
Q ss_pred CCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
........+.. ...+...+++++++||+++ |++++|..+.+.+.+.
T Consensus 170 ~~e~~~~~~~~-~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 170 LKERERLKKRI-LDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 31111111111 1222334577999999999 9999999999887643
No 196
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.73 E-value=1.7e-17 Score=116.32 Aligned_cols=165 Identities=16% Similarity=0.090 Sum_probs=96.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHh-----cCCCcc--ccc---ccc----------eeEEEE-----------------
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQ-----MGEVVS--TIP---TIG----------FNVETV----------------- 56 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~-----~~~~~~--~~~---t~~----------~~~~~~----------------- 56 (182)
..+...+++.|.+|+||||+++.+. +.+..- ..+ ..+ ......
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDR 90 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHH
Confidence 3677889999999999999999997 433211 011 000 000000
Q ss_pred -------------EE-cCeEEEEEEcCCCCCCcchhh------hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhccc
Q 030149 57 -------------QY-NNIKFQVWDLGGQTSIRPYWR------CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEEL 116 (182)
Q Consensus 57 -------------~~-~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~ 116 (182)
.. .+..+.+|||||..+...... ..+.. +++++++|+....+.................
T Consensus 91 ~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 169 (262)
T 1yrb_A 91 LMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR 169 (262)
T ss_dssp HHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc
Confidence 00 135899999999865432211 24566 8999999975443322222221111111122
Q ss_pred CCCeEEEEeecCCCCCCCCHHHHHHHhcc------c-------------------cccCCccEEEEecccCCCChHHHHH
Q 030149 117 RGAVVLIFANKQDLPGALDDAAVTEALEL------H-------------------KIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 117 ~~~~iivv~nK~Dl~~~~~~~~~~~~~~~------~-------------------~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
.+.|+++|+||+|+......+++.+.+.. . .......+++++||++++|++++++
T Consensus 170 ~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 249 (262)
T 1yrb_A 170 LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLET 249 (262)
T ss_dssp HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHH
T ss_pred cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHH
Confidence 36899999999998643211112221100 0 0011234689999999999999999
Q ss_pred HHHHHHhh
Q 030149 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~~~~ 179 (182)
++.+.+..
T Consensus 250 ~i~~~~~~ 257 (262)
T 1yrb_A 250 LAYEHYCT 257 (262)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 99988754
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.73 E-value=1.2e-17 Score=133.32 Aligned_cols=112 Identities=15% Similarity=0.097 Sum_probs=85.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC------------Ccc-------cccccceeEEEEEEc----------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE------------VVS-------TIPTIGFNVETVQYN---------------- 59 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~------------~~~-------~~~t~~~~~~~~~~~---------------- 59 (182)
.+..||+|+|++++|||||+++++... +.. ...|+......+.+.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 567899999999999999999997531 110 112444444445554
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
+..+++|||||+.++...+..+++.+|++|+|+|+.+..++.....| ..... .+.|+++++||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVL-RQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCeEEEEECCCcc
Confidence 68899999999999999999999999999999999988776654433 33322 478999999999985
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.72 E-value=4.5e-18 Score=130.22 Aligned_cols=115 Identities=23% Similarity=0.229 Sum_probs=78.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCc----ccccccceeEEEE----------------------------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVV----STIPTIGFNVETV---------------------------------- 56 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~----~~~~t~~~~~~~~---------------------------------- 56 (182)
...++|+|+|.+|+|||||+|++++.++. ...|+........
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999988763 2223221100000
Q ss_pred ----EEcC---eEEEEEEcCCCCC-----------CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCC
Q 030149 57 ----QYNN---IKFQVWDLGGQTS-----------IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRG 118 (182)
Q Consensus 57 ----~~~~---~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (182)
.+.. ..+.+|||||... +...+..++..+|++|+|+|+++.........++..+. ..+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR----GHE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT----TCG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH----hcC
Confidence 0000 3689999999764 33455667788999999999987554444444444432 235
Q ss_pred CeEEEEeecCCCCCC
Q 030149 119 AVVLIFANKQDLPGA 133 (182)
Q Consensus 119 ~~iivv~nK~Dl~~~ 133 (182)
.|+++|+||+|+...
T Consensus 219 ~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 219 DKIRVVLNKADMVET 233 (550)
T ss_dssp GGEEEEEECGGGSCH
T ss_pred CCEEEEEECCCccCH
Confidence 789999999999754
No 199
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=123.64 Aligned_cols=156 Identities=15% Similarity=0.219 Sum_probs=73.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-c--------ccccceeEEEEEE----cCeEEEEEEcCCCCCCc------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-T--------IPTIGFNVETVQY----NNIKFQVWDLGGQTSIR------ 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~--------~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~------ 75 (182)
.-.++|+++|++|+|||||++.+++..+.. . .+|.......+.. ....+.+||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 456889999999999999999999876532 1 1222221111111 22478999999976431
Q ss_pred -c------------------hhhhccCCCC--eEEEEEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 76 -P------------------YWRCYFPNTQ--AIIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 76 -~------------------~~~~~~~~~d--~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
. +...++.+++ +++|+++.+. .+++... .++..+ . .+.|+|+|+||+|+..+
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHH-h----ccCcEEEEEEcccCccH
Confidence 1 1123344544 4555555431 2333333 344333 2 37899999999998643
Q ss_pred CCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
........... ......+++++++|+.++.++++++..+...+
T Consensus 183 ~ev~~~k~~i~-~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 183 EECQQFKKQIM-KEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHH-HHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHH-HHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 22211111111 11223356799999999999999888777654
No 200
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.71 E-value=1.4e-16 Score=125.48 Aligned_cols=114 Identities=21% Similarity=0.173 Sum_probs=82.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--------CC------cc-------cccccceeEEEEEEc-------CeEEEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG--------EV------VS-------TIPTIGFNVETVQYN-------NIKFQVW 66 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~--------~~------~~-------~~~t~~~~~~~~~~~-------~~~~~~~ 66 (182)
.+..||+|+|+.++|||||..+|+.. .. .. +.-|+.....++.+. ++.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 56789999999999999999998521 11 10 111344445555553 6899999
Q ss_pred EcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 67 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 67 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
||||+.+|.......++-+|++|+|+|+...-. ......|.+... .+.|.++++||+|....
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~-~qT~~v~~~a~~----~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVE-PQSETVWRQANK----YGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSC-HHHHHHHHHHHH----HTCCEEEEEECSSSTTC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEccccccCc
Confidence 999999999999999999999999999976532 122344444444 37999999999998644
No 201
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.71 E-value=7.8e-17 Score=126.27 Aligned_cols=156 Identities=19% Similarity=0.143 Sum_probs=97.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccc---cc------------------------------------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIP---TI------------------------------------------ 49 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~---t~------------------------------------------ 49 (182)
..-++|+|+|.+++|||||+|++++..+.+... |.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 355899999999999999999999877632111 10
Q ss_pred -----ce----eEEEEEE-cCeEEEEEEcCCCCCC-------------cchhhhcc-CCCCeEEEEEeCCCcchHHHHHH
Q 030149 50 -----GF----NVETVQY-NNIKFQVWDLGGQTSI-------------RPYWRCYF-PNTQAIIYVVDSSDTERLVIAKD 105 (182)
Q Consensus 50 -----~~----~~~~~~~-~~~~~~~~D~~g~~~~-------------~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~ 105 (182)
++ ....+.. ....+.++||||.... ..+...++ ..+|++++|+|++.+..-.....
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 00 0111111 2346899999995441 12233344 57899999999987543222212
Q ss_pred HHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHH
Q 030149 106 EFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 106 ~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
. .......+.|+++|+||+|+...... ..+.. ...........+++++||++|.|+++|++.+.+
T Consensus 209 l----l~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 209 I----AKEVDPQGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp H----HHHHCTTCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred H----HHHHHhcCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 2 22223357899999999999754332 22211 111111223456899999999999999998876
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.70 E-value=2.8e-18 Score=124.58 Aligned_cols=153 Identities=18% Similarity=0.131 Sum_probs=90.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc------CCCcc--ccc--cc-------------------ceeEEE---------
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQM------GEVVS--TIP--TI-------------------GFNVET--------- 55 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~------~~~~~--~~~--t~-------------------~~~~~~--------- 55 (182)
..+...|+++|++|+||||+++.+.+ .+... ..+ +. ......
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 35678899999999999999999952 11110 000 00 000000
Q ss_pred -----------EEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEE
Q 030149 56 -----------VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIF 124 (182)
Q Consensus 56 -----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv 124 (182)
....+..+.++||||....... ....+|++++|+|+...+....... .. .+.|.++|
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv 200 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIV 200 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEE
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEE
Confidence 0024678999999997654332 4578999999999865532111100 00 13578999
Q ss_pred eecCCCCCCCCHHH----HHHHhccccc--cCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 125 ANKQDLPGALDDAA----VTEALELHKI--KNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 125 ~nK~Dl~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+||+|+........ +...+..... .....+++++||++|.|++++++.|.+.+.
T Consensus 201 ~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 201 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 99999864311221 1111111110 111346999999999999999999988765
No 203
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.68 E-value=2.7e-15 Score=108.83 Aligned_cols=79 Identities=23% Similarity=0.254 Sum_probs=58.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-c--ccccceeEEEEEEcC-----------------eEEEEEEcCCCCCCc--
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-T--IPTIGFNVETVQYNN-----------------IKFQVWDLGGQTSIR-- 75 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~--~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~~-- 75 (182)
++|+++|.+|+|||||+|++.+..... . ..|.+.+...+.+.+ ..+.+|||||.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 689999999999999999999876322 2 235555555555544 579999999987642
Q ss_pred -----chhhhccCCCCeEEEEEeCCC
Q 030149 76 -----PYWRCYFPNTQAIIYVVDSSD 96 (182)
Q Consensus 76 -----~~~~~~~~~~d~ii~v~d~~~ 96 (182)
.....+++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 222345789999999999976
No 204
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.67 E-value=4e-16 Score=113.73 Aligned_cols=112 Identities=18% Similarity=0.192 Sum_probs=77.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCeEEEEEEcCCCCCC-------cchhhhccCCCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSI-------RPYWRCYFPNTQ 86 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~d 86 (182)
..+|+++|.|++|||||+|++.+.+... ...|.......+.+.+.+++++||||.-.. .......++.+|
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad 151 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCN 151 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCS
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcC
Confidence 3689999999999999999999866432 344777888889999999999999994321 122334567899
Q ss_pred eEEEEEeCCCcchHHH-HHHHHHHHHhhcccCCCeEEEEeecCCC
Q 030149 87 AIIYVVDSSDTERLVI-AKDEFHAILEEEELRGAVVLIFANKQDL 130 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~iivv~nK~Dl 130 (182)
++++|+|+++|..... +...+..+ .......|.++++||.|.
T Consensus 152 ~il~vvD~~~p~~~~~~i~~EL~~~--~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 152 LLFIILDVNKPLHHKQIIEKELEGV--GIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEEETTSHHHHHHHHHHHHHHT--TEEETCCCCCEEEEECSS
T ss_pred ccccccccCccHHHHHHHHHHHHHh--hHhhccCChhhhhhHhhh
Confidence 9999999987632211 11111111 112234666777777774
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.67 E-value=3.5e-16 Score=107.34 Aligned_cols=151 Identities=19% Similarity=0.172 Sum_probs=89.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce----------------eEEEEEE-------------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF----------------NVETVQY------------------- 58 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~----------------~~~~~~~------------------- 58 (182)
.+.++|+++|.+|||||||+++++...+.. +.++++. ....+..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 467899999999999999999998654322 2222221 1111110
Q ss_pred -cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CC
Q 030149 59 -NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LD 135 (182)
Q Consensus 59 -~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~ 135 (182)
.+..+.++|++|.-... ..+-...+..+.++|......... . .... ...|.++|+||+|+.+. ..
T Consensus 116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~-~~~~------~~~~~iiv~NK~Dl~~~~~~~ 183 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--K-HPGI------MKTADLIVINKIDLADAVGAD 183 (226)
T ss_dssp GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--T-CHHH------HTTCSEEEEECGGGHHHHTCC
T ss_pred cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--h-hhhH------hhcCCEEEEeccccCchhHHH
Confidence 01257777777732111 111123456677777532211110 0 0111 14788999999998532 23
Q ss_pred HHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 136 DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
.++....... .....+++++||++|.|++++|+.+.+.+...
T Consensus 184 ~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 184 IKKMENDAKR---INPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp HHHHHHHHHH---HCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH---hCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 3333333322 13456899999999999999999999888654
No 206
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.66 E-value=1.6e-16 Score=105.59 Aligned_cols=175 Identities=21% Similarity=0.302 Sum_probs=115.1
Q ss_pred hHHHhhhhcCCcccEEEEEcCC-CCCHHHHHHHHhcCC-Ccc-------cccccc--ee-----EEEEEE----------
Q 030149 5 FTRLFSSLFGNKEARILVLGLD-NAGKTTILYRLQMGE-VVS-------TIPTIG--FN-----VETVQY---------- 58 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~-~~GKtsli~~~~~~~-~~~-------~~~t~~--~~-----~~~~~~---------- 58 (182)
.+.|+.++.++..++++++|+. ..=..+|+.++...+ ..+ ...-+| +. ...+++
T Consensus 4 ~~~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~e 83 (227)
T 3l82_B 4 VTSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKE 83 (227)
T ss_dssp CCCSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC----
T ss_pred HHHHHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHH
Confidence 4567788888999999999963 234558888887644 221 111111 11 111111
Q ss_pred ------c----CeEEEEEEcC------CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHH---HHHhhc-ccCC
Q 030149 59 ------N----NIKFQVWDLG------GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFH---AILEEE-ELRG 118 (182)
Q Consensus 59 ------~----~~~~~~~D~~------g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~---~~~~~~-~~~~ 118 (182)
. -.++.....| |+..++.+|..|++++|++|||+|.++.+.++ .+..+. .++... ...+
T Consensus 84 r~~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~g 162 (227)
T 3l82_B 84 RDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSG 162 (227)
T ss_dssp ---------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSC
T ss_pred hhhhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCC
Confidence 0 0123333444 78899999999999999999999999887654 444442 233222 2367
Q ss_pred CeEEEEeecC-CCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHhhcC
Q 030149 119 AVVLIFANKQ-DLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSIG 181 (182)
Q Consensus 119 ~~iivv~nK~-Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~~ 181 (182)
.|++|+.||. |+.......++.+.+..... ...|.+..|||++|+|+.+-++||.+.+.+++
T Consensus 163 apLLVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 163 RPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp SCEEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred CeEEEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 8999999995 78888889999999887765 47899999999999999999999998887654
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.61 E-value=1.1e-15 Score=110.75 Aligned_cols=152 Identities=16% Similarity=0.139 Sum_probs=89.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc------CCCcc--cccc--------------cc-----eeEEE------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM------GEVVS--TIPT--------------IG-----FNVET------------ 55 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~------~~~~~--~~~t--------------~~-----~~~~~------------ 55 (182)
.+...++++|++|||||||++.+.+ ++..- ..++ ++ .....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 5667899999999999999999973 32211 0000 00 00000
Q ss_pred ----------EEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEe
Q 030149 56 ----------VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFA 125 (182)
Q Consensus 56 ----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~ 125 (182)
+...+..+.++||||...... .....+|.+++++|+...+........ +. ..+.++++
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~------~~~~ivvl 200 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---IF------ELADMIAV 200 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---HH------HHCSEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHH---Hh------ccccEEEE
Confidence 112578999999999754322 234689999999998644321111100 11 23457788
Q ss_pred ecCCCCCCCC-H----HHHHHHhcccccc--CCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 126 NKQDLPGALD-D----AAVTEALELHKIK--NRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 126 nK~Dl~~~~~-~----~~~~~~~~~~~~~--~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
||+|+..... . +++.......... ....+++.+|++++.|++++++.|.+.+.
T Consensus 201 NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 201 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999753211 1 1222222111100 01245899999999999999999988764
No 208
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.58 E-value=3.6e-15 Score=103.78 Aligned_cols=112 Identities=21% Similarity=0.341 Sum_probs=88.4
Q ss_pred cCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHH---HHHhhc-ccCCCeEEEEeec-CCCCCCCCHHHHHHH
Q 030149 68 LGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFH---AILEEE-ELRGAVVLIFANK-QDLPGALDDAAVTEA 142 (182)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~---~~~~~~-~~~~~~iivv~nK-~Dl~~~~~~~~~~~~ 142 (182)
.+|++..+.+|..|++++|++|||+|+++.++++ ....+. .++... ...+.|++|+.|| .|+.......++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 3578899999999999999999999999988765 333333 333222 1368999999997 589888889999999
Q ss_pred hccccccCCccEEEEecccCCCChHHHHHHHHHHHhhcC
Q 030149 143 LELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSIG 181 (182)
Q Consensus 143 ~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~~ 181 (182)
+...... ..+-+..|||.+|+|+.|-++||.+.+.+++
T Consensus 273 L~L~~l~-r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 273 LHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp TTGGGGC-SCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred cCCccCC-CcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 8876654 7889999999999999999999999987654
No 209
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.58 E-value=1.4e-14 Score=105.61 Aligned_cols=79 Identities=22% Similarity=0.255 Sum_probs=55.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCc--c-cccccceeEEEEEE---------------------cCeEEEEEEcCCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVV--S-TIPTIGFNVETVQY---------------------NNIKFQVWDLGGQTS 73 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~--~-~~~t~~~~~~~~~~---------------------~~~~~~~~D~~g~~~ 73 (182)
++|+++|.+|+|||||++++.+.... . ...|...+.....+ ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 57999999999999999999875421 1 11234433333332 245799999999765
Q ss_pred Cc-------chhhhccCCCCeEEEEEeCCC
Q 030149 74 IR-------PYWRCYFPNTQAIIYVVDSSD 96 (182)
Q Consensus 74 ~~-------~~~~~~~~~~d~ii~v~d~~~ 96 (182)
.. .....+++.+|++++|+|+.+
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 32 223345789999999999975
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.38 E-value=5.1e-13 Score=97.88 Aligned_cols=84 Identities=19% Similarity=0.218 Sum_probs=53.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEc-----------------CeEEEEEEcCCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYN-----------------NIKFQVWDLGGQTSI 74 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~~ 74 (182)
....+|+++|.+|+|||||+|++.+..... ...|...+...+.+. ...+.+|||||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 456899999999999999999999876522 223555555555543 235999999997653
Q ss_pred c-------chhhhccCCCCeEEEEEeCCCcc
Q 030149 75 R-------PYWRCYFPNTQAIIYVVDSSDTE 98 (182)
Q Consensus 75 ~-------~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
. ..+..+++.+|++++|+|+.+.+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 3 24566789999999999987643
No 211
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.37 E-value=2.4e-12 Score=91.95 Aligned_cols=98 Identities=19% Similarity=0.178 Sum_probs=71.3
Q ss_pred CCCCcchhhhccCCCCeEEEEEeCCCcc-hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccccc
Q 030149 71 QTSIRPYWRCYFPNTQAIIYVVDSSDTE-RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIK 149 (182)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 149 (182)
++.+..+...+++++|++++|+|+++++ ++..+..|+..+.. .+.|+++|+||+|+.++...+...+... ...
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~--~~~ 139 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWIS--IYR 139 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHH--HHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHH--HHH
Confidence 6677777788999999999999999886 77777777765433 5799999999999974311011111111 111
Q ss_pred CCccEEEEecccCCCChHHHHHHHH
Q 030149 150 NRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 150 ~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
..+.+++++||++|.|++++++.+.
T Consensus 140 ~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 140 DAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred HCCCeEEEEECCCCCCHHHHHhhcc
Confidence 2356799999999999999998764
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.37 E-value=1e-11 Score=91.20 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=60.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEEcC-----------------eEEEEEEcCCCC-
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNN-----------------IKFQVWDLGGQT- 72 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~g~~- 72 (182)
.+..+|+++|++|+|||||+|++.+..... ..| |...+...+.+.+ ..+.+||+||..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 456899999999999999999999866422 233 5555666666654 468999999943
Q ss_pred ------CCcchhhhccCCCCeEEEEEeCCC
Q 030149 73 ------SIRPYWRCYFPNTQAIIYVVDSSD 96 (182)
Q Consensus 73 ------~~~~~~~~~~~~~d~ii~v~d~~~ 96 (182)
.+.......++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 233345566789999999999864
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.23 E-value=1e-12 Score=96.23 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=67.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC-----CCccccccccee--EEEEEEcCeEEEEEEcCCCCCCcch--------hhhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG-----EVVSTIPTIGFN--VETVQYNNIKFQVWDLGGQTSIRPY--------WRCY 81 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~-----~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 81 (182)
..+|+++|.+|+|||||+|++.+. ......+..+.+ ...+.. +..+.++||||....... ....
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~-~~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 240 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL-ESGATLYDTPGIINHHQMAHFVDARDLKII 240 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC-STTCEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe-CCCeEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence 468999999999999999999875 222222222222 222322 234899999995433211 1111
Q ss_pred c--CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 82 F--PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 82 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
+ ...+.++++++......+..+.. +......+.|+++++||.|....
T Consensus 241 ~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 241 TPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHR 289 (369)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEE
T ss_pred hcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCccccc
Confidence 1 66899999999843211111110 22333356899999999998644
No 214
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.22 E-value=2.9e-11 Score=91.44 Aligned_cols=154 Identities=18% Similarity=0.132 Sum_probs=87.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh------cCCCcc-----ccccc-----------ceeEEEE----------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ------MGEVVS-----TIPTI-----------GFNVETV---------------- 56 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~------~~~~~~-----~~~t~-----------~~~~~~~---------------- 56 (182)
.+...|+++|.+|+||||+++.+. +.+... +.+.. +......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345689999999999999999997 443211 11100 0111110
Q ss_pred -EEcCeEEEEEEcCCCCCCcc-hhh---hc--cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeE-EEEeecC
Q 030149 57 -QYNNIKFQVWDLGGQTSIRP-YWR---CY--FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVV-LIFANKQ 128 (182)
Q Consensus 57 -~~~~~~~~~~D~~g~~~~~~-~~~---~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-ivv~nK~ 128 (182)
...+..+.++||||...... .+. .. ...+|.+++|+|+...... ......+.. ..|+ .+|+||+
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~-----~~~i~gvVlNK~ 250 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKD-----KVDVASVIVTKL 250 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHH-----HHCCCCEEEECT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHh-----hcCceEEEEeCC
Confidence 11567899999999764322 111 11 1268999999999775431 112222211 2564 8999999
Q ss_pred CCCCCCCH-HHHHHHhccc--------cc--cCCccEEEEecccCCCC-hHHHHHHHHHH
Q 030149 129 DLPGALDD-AAVTEALELH--------KI--KNRQWAIFKTSAIKGEG-LFEGLDWLSNT 176 (182)
Q Consensus 129 Dl~~~~~~-~~~~~~~~~~--------~~--~~~~~~~~~~S~~~~~g-i~~l~~~l~~~ 176 (182)
|....... -.+...+..- .. .....+.+.+|+..|.| +++|++.+.+.
T Consensus 251 D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 251 DGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 98744322 1222222110 00 00112345689999999 99999988754
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.15 E-value=2.3e-10 Score=84.63 Aligned_cols=142 Identities=11% Similarity=0.148 Sum_probs=72.9
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc---c--ccccceeEEEEEEc--C--eEEEEEEcCCCCCCcc------
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS---T--IPTIGFNVETVQYN--N--IKFQVWDLGGQTSIRP------ 76 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~--~~t~~~~~~~~~~~--~--~~~~~~D~~g~~~~~~------ 76 (182)
..+...++++|+|++|+|||||++.+.+..+.. . .+........+... . ..+.++|++|......
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~ 116 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYK 116 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSH
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhh
Confidence 334455779999999999999999998865322 1 11111111111111 1 3689999998543210
Q ss_pred --------hh----hhc---------cCC--CCe-EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 77 --------YW----RCY---------FPN--TQA-IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 77 --------~~----~~~---------~~~--~d~-ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
.+ ..+ ..+ +|+ ++++.|...+.+-.+ ..++.... .+.|+|+|+||+|...
T Consensus 117 ~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-----ieilk~L~-~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 117 PIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-----LVTMKKLD-SKVNIIPIIAKADAIS 190 (427)
T ss_dssp HHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-----HHHHHHTC-SCSEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-----HHHHHHHh-hCCCEEEEEcchhccc
Confidence 11 111 122 234 445556544322111 23333333 5799999999999875
Q ss_pred CCCHHHHHHHhccccccCCccEEEEecc
Q 030149 133 ALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
+.....+...+.. .....+++++.+|.
T Consensus 191 ~~E~~~l~~~I~~-~L~~~gi~I~~is~ 217 (427)
T 2qag_B 191 KSELTKFKIKITS-ELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHHHHH-HHBTTBCCCCCCC-
T ss_pred hHHHHHHHHHHHH-HHHHcCCcEEecCC
Confidence 4333333333322 12335666666664
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.10 E-value=3.7e-11 Score=87.97 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=70.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC------CcccccccceeEEEEEE-cCeEEEEEEcCCCCCCcch--------hhhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE------VVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPY--------WRCY 81 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~------~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~--------~~~~ 81 (182)
..+|+++|.+|+|||||+|++.+.. .....+..+.+.....+ -+..+.++||||......+ ....
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 239 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLI 239 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHh
Confidence 4689999999999999999998752 22122233333222222 1223899999995433211 1111
Q ss_pred --cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHh
Q 030149 82 --FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEAL 143 (182)
Q Consensus 82 --~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~ 143 (182)
....+.++++++.........+. .+......+.|+++++||.|.......+...+.+
T Consensus 240 ~~~~~i~~~~~~l~~~~~~~~g~l~-----~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~ 298 (368)
T 3h2y_A 240 TPTKEIKPMVFQLNEEQTLFFSGLA-----RFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELY 298 (368)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTE-----EEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHH
T ss_pred ccccccCceEEEEcCCCEEEEcceE-----EEEEecCCCceEEEEecCccccccccHHHHHHHH
Confidence 35678999999873321111110 0223333568999999999987554444444333
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.08 E-value=6.1e-11 Score=86.81 Aligned_cols=101 Identities=19% Similarity=0.120 Sum_probs=67.9
Q ss_pred CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC-HHHHHHHhccccc
Q 030149 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD-DAAVTEALELHKI 148 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~~~~~~~~~~~~ 148 (182)
..+.|...+..+.+.++++++|+|+.+++ ..|...+.+.. .+.|+++|+||+|+.+... .+...+.+.. ..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~-~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRY-SA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHH-HH
Confidence 45677888888888999999999998753 23333333322 3789999999999965432 2233222111 11
Q ss_pred cCCcc---EEEEecccCCCChHHHHHHHHHHHh
Q 030149 149 KNRQW---AIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 149 ~~~~~---~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+..++ +++.+||++|.|++++++.+.+...
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 11223 6999999999999999999977543
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.07 E-value=1.2e-09 Score=80.85 Aligned_cols=158 Identities=16% Similarity=0.127 Sum_probs=87.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccc--cccc----eeEEEEEEcC-eEEEEEEcCCCCCCcc----hh-hhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTI--PTIG----FNVETVQYNN-IKFQVWDLGGQTSIRP----YW-RCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~--~t~~----~~~~~~~~~~-~~~~~~D~~g~~~~~~----~~-~~~~ 82 (182)
.+...++++|++|||||||+|.+.+....... ...+ ......+... ..+.++|++|...... .. ...+
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 34568999999999999999999874322110 0000 0011111121 3689999998532111 11 1123
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC---------CCCCHHHHHHHhcccc-----c
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP---------GALDDAAVTEALELHK-----I 148 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~---------~~~~~~~~~~~~~~~~-----~ 148 (182)
...+..+. ++...... .+..+...+.. .+.|+++|.||.|+. ++...+++.+.+.... .
T Consensus 147 ~~~~~~~~-lS~G~~~k---qrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 147 YEYDFFII-ISATRFKK---NDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp GGCSEEEE-EESSCCCH---HHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCCeEE-eCCCCccH---HHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555 77653221 11222222222 368999999999963 2233444444433321 1
Q ss_pred c-CCccEEEEecc--cCCCChHHHHHHHHHHHhh
Q 030149 149 K-NRQWAIFKTSA--IKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 149 ~-~~~~~~~~~S~--~~~~gi~~l~~~l~~~~~~ 179 (182)
. .....++.+|+ ..+.|++++.+.+.+.+++
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 1 11234788999 5666799999999887754
No 219
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.04 E-value=7.8e-10 Score=77.65 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=60.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCccc----------ccccceeEEEEEE------cCeEEEEEEcCCCCCCc-----
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVST----------IPTIGFNVETVQY------NNIKFQVWDLGGQTSIR----- 75 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~~----------~~t~~~~~~~~~~------~~~~~~~~D~~g~~~~~----- 75 (182)
.++++++|++|+|||||++.+++...... ..+... ..+.+ -...+.++|++|.....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~--~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEI--KAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSC--CEEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceee--eeeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence 47899999999999999999986432210 011111 11111 12378999999832210
Q ss_pred --chh---------------------hhccCCCCeEEEEEeCC-CcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 76 --PYW---------------------RCYFPNTQAIIYVVDSS-DTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 76 --~~~---------------------~~~~~~~d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
... ...+..++++++++|.. .+-.-.. ...+..+ ... .++++|+||+|..
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L----~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHL----SKV-VNIIPVIAKADTM 153 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHH----HTT-SEEEEEETTGGGS
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHH----Hhc-CcEEEEEeccccC
Confidence 000 01123468899999964 2221111 2222222 223 8999999999987
Q ss_pred CC
Q 030149 132 GA 133 (182)
Q Consensus 132 ~~ 133 (182)
..
T Consensus 154 t~ 155 (270)
T 3sop_A 154 TL 155 (270)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.03 E-value=1.2e-10 Score=85.32 Aligned_cols=102 Identities=13% Similarity=0.074 Sum_probs=68.6
Q ss_pred CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC-HHHHHHHhccccc
Q 030149 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD-DAAVTEALELHKI 148 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~~~~~~~~~~~~ 148 (182)
.++.|...+..+.+.++++++|+|+.++++ .|...+.... .+.|+++|+||+|+..... .+...+.+.. ..
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~-~~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRR-MA 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHH-HH
Confidence 477788888888889999999999998763 2222222222 3789999999999975432 2333322211 11
Q ss_pred cCCc---cEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 149 KNRQ---WAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 149 ~~~~---~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
+..+ .+++.+||++|.|++++++.+.+.+..
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~ 162 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYREG 162 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTT
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 1222 368999999999999999999876543
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.98 E-value=4.1e-10 Score=79.58 Aligned_cols=102 Identities=16% Similarity=0.118 Sum_probs=67.0
Q ss_pred EEEcCCCC-CCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHh
Q 030149 65 VWDLGGQT-SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEAL 143 (182)
Q Consensus 65 ~~D~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~ 143 (182)
+-..||+. .........+..+|+++.|+|+.++.+... ..+..++ .++|.++|+||+|+.+....+...+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 44678875 445566667899999999999998876532 1222222 479999999999997531112222222
Q ss_pred ccccccCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 144 ELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 144 ~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+..+.+++.+||+++.|++++++.+.+.+.
T Consensus 76 -----~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 -----ENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp -----HTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred -----HhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 123457999999999999999998887765
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.89 E-value=1.6e-09 Score=76.57 Aligned_cols=59 Identities=24% Similarity=0.362 Sum_probs=38.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEE--EEEEcCeEEEEEEcCCCCC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE--TVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~ 73 (182)
..+.++|+++|.+|+|||||+|++.+.......++.+.+.. .+.. +..+.++||||...
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGILW 177 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-CCCEEEEECcCcCC
Confidence 35678999999999999999999998775554443332221 2222 45789999999643
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.86 E-value=7.1e-10 Score=77.54 Aligned_cols=57 Identities=25% Similarity=0.317 Sum_probs=36.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE-cCeEEEEEEcCCCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTSI 74 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~ 74 (182)
++++++|.+|+|||||+|++.+.......++.+.+.....+ .+..+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCCCEEEEECCCcccC
Confidence 69999999999999999999987765544444433221111 2457899999996543
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.63 E-value=3.6e-08 Score=73.43 Aligned_cols=110 Identities=19% Similarity=0.203 Sum_probs=63.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc------CCCcc-----ccc-----------ccceeEEEE-----------------
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM------GEVVS-----TIP-----------TIGFNVETV----------------- 56 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~------~~~~~-----~~~-----------t~~~~~~~~----------------- 56 (182)
+...|+++|.+|+||||++..+.. .+..- +.+ ..+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999862 22110 111 011111100
Q ss_pred EEcCeEEEEEEcCCCCCCcchhh------hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCC
Q 030149 57 QYNNIKFQVWDLGGQTSIRPYWR------CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130 (182)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 130 (182)
...+..+.++||||......... .....+|.+++|+|+....... .....+.. .-.+..+|+||.|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~----~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKE----ATPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHH----SCTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHh----hCCCeEEEEECCCC
Confidence 00247899999999654332111 1123579999999987643322 22222221 23456789999998
Q ss_pred CC
Q 030149 131 PG 132 (182)
Q Consensus 131 ~~ 132 (182)
..
T Consensus 252 ~~ 253 (443)
T 3dm5_A 252 SA 253 (443)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.63 E-value=6e-08 Score=74.74 Aligned_cols=60 Identities=18% Similarity=0.142 Sum_probs=42.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCc-cccc-----ccceeEEEEE---EcCeEEEEEEcCCCCC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV-STIP-----TIGFNVETVQ---YNNIKFQVWDLGGQTS 73 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~-~~~~-----t~~~~~~~~~---~~~~~~~~~D~~g~~~ 73 (182)
..+..+|+|+|.+|+|||||+|++.+.... .... |.+....... ..+..+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 467799999999999999999999987642 2221 2222222122 1567899999999543
No 226
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.58 E-value=5e-08 Score=75.89 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
..++|+|+.|||||||++.+.+-.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 359999999999999999998764
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.54 E-value=1.1e-07 Score=70.92 Aligned_cols=108 Identities=19% Similarity=0.194 Sum_probs=62.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC------CCcc-----ccc-------------------c--cceeEEEE------EE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG------EVVS-----TIP-------------------T--IGFNVETV------QY 58 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~------~~~~-----~~~-------------------t--~~~~~~~~------~~ 58 (182)
...|+++|.+|+||||+++.+... +..- +.+ . .+.+...+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998641 1110 000 0 00000000 01
Q ss_pred cCeEEEEEEcCCCCCCcchhh------hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCC-e-EEEEeecCCC
Q 030149 59 NNIKFQVWDLGGQTSIRPYWR------CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGA-V-VLIFANKQDL 130 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~-iivv~nK~Dl 130 (182)
.+..+.++||||......... .....+|.+++|+|+..... .......+ . ... | ..+|+||+|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~-~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF-K----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH-h----hcccCCeEEEEeCCCC
Confidence 567899999999765322111 12236899999999865431 11112121 1 234 4 8999999998
Q ss_pred CC
Q 030149 131 PG 132 (182)
Q Consensus 131 ~~ 132 (182)
..
T Consensus 251 ~~ 252 (432)
T 2v3c_C 251 SA 252 (432)
T ss_dssp CS
T ss_pred cc
Confidence 53
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.53 E-value=1.9e-08 Score=70.26 Aligned_cols=93 Identities=10% Similarity=0.008 Sum_probs=58.9
Q ss_pred cCCCC-CCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccc
Q 030149 68 LGGQT-SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELH 146 (182)
Q Consensus 68 ~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~ 146 (182)
.||+. .........+..+|+++.|+|+.++.+..... +. + . ++|.++|+||+|+.++...+...+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l----l--~k~~iivlNK~DL~~~~~~~~~~~~~~-- 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F----S--RKETIILLNKVDIADEKTTKKWVEFFK-- 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C----T--TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h----c--CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence 46754 33445666789999999999998886543211 11 1 1 789999999999975322122222221
Q ss_pred cccCCccEEEEecccCCCChHHHHHHHHH
Q 030149 147 KIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
..+.++ .+||+++.|++++++.+..
T Consensus 73 ---~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 73 ---KQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ---HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ---HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 124457 9999999999999887643
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.34 E-value=2.8e-07 Score=65.65 Aligned_cols=87 Identities=18% Similarity=0.131 Sum_probs=56.2
Q ss_pred hhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC----HHHHHHHhccccccCCcc
Q 030149 78 WRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD----DAAVTEALELHKIKNRQW 153 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~ 153 (182)
....+.++|.+++|+|+.+|..-... +..++......++|.++|+||+|+.++.. .+.+.+.+. ..+.
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~---i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~-----~~g~ 151 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTAL---LDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYR-----NIGY 151 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHH---HHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH-----HHTC
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHH---HHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHH-----hCCC
Confidence 33457889999999999877543332 22222222224789999999999986522 122222221 1235
Q ss_pred EEEEecccCCCChHHHHHH
Q 030149 154 AIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 154 ~~~~~S~~~~~gi~~l~~~ 172 (182)
+++.+|+.++.|+++|++.
T Consensus 152 ~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 152 DVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp CEEECCHHHHTTCTTTGGG
T ss_pred eEEEEecCCCCCHHHHHhh
Confidence 6999999999998877653
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.24 E-value=7.9e-06 Score=60.88 Aligned_cols=110 Identities=19% Similarity=0.181 Sum_probs=62.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh------cCCCcc-----ccc-----------ccceeEEEE-----------------
Q 030149 16 KEARILVLGLDNAGKTTILYRLQ------MGEVVS-----TIP-----------TIGFNVETV----------------- 56 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~------~~~~~~-----~~~-----------t~~~~~~~~----------------- 56 (182)
+...|+++|++|+||||++..+. +.+..- +.+ ..+......
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35688999999999999999986 222110 000 011111100
Q ss_pred EEcCeEEEEEEcCCCCC--Ccchh----hh--ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecC
Q 030149 57 QYNNIKFQVWDLGGQTS--IRPYW----RC--YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQ 128 (182)
Q Consensus 57 ~~~~~~~~~~D~~g~~~--~~~~~----~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 128 (182)
...+..+.++||||... ..... .. .....+.+++|+|+...+...... ..+... -.+..+|+||.
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a---~~f~~~----~~~~gVIlTKl 248 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLA---SRFHQA----SPIGSVIITKM 248 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHH---HHHHHH----CSSEEEEEECG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHH---HHHhcc----cCCcEEEEecc
Confidence 01367899999999644 21111 10 112468999999997654322222 222211 24568899999
Q ss_pred CCCC
Q 030149 129 DLPG 132 (182)
Q Consensus 129 Dl~~ 132 (182)
|...
T Consensus 249 D~~a 252 (433)
T 3kl4_A 249 DGTA 252 (433)
T ss_dssp GGCS
T ss_pred cccc
Confidence 9763
No 231
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.16 E-value=5.7e-06 Score=60.13 Aligned_cols=86 Identities=21% Similarity=0.117 Sum_probs=52.1
Q ss_pred ccCCCCeEEEEEeCCCcchHHH-HHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEec
Q 030149 81 YFPNTQAIIYVVDSSDTERLVI-AKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
...++|.+++|... .|..-.. +..++... . ..++|.++|+||+|+.++...+....... .....+++++.+|
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a-~---~~~~~~iivlNK~DL~~~~~~~~~~~~~~--~y~~~G~~v~~~S 199 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGC-E---TLQVEPLIVLNKIDLLDDEGMDFVNEQMD--IYRNIGYRVLMVS 199 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHH-H---HHTCEEEEEEECGGGCCHHHHHHHHHHHH--HHHTTTCCEEECB
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHH-H---hcCCCEEEEEECccCCCchhHHHHHHHHH--HHHhCCCcEEEEe
Confidence 35789999987654 4543222 22222222 1 13688899999999975421111222111 1233456799999
Q ss_pred ccCCCChHHHHHHH
Q 030149 160 AIKGEGLFEGLDWL 173 (182)
Q Consensus 160 ~~~~~gi~~l~~~l 173 (182)
+.++.|++++...+
T Consensus 200 a~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 200 SHTQDGLKPLEEAL 213 (358)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred cCCCcCHHHHHHhc
Confidence 99999999987653
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.10 E-value=2.3e-06 Score=60.78 Aligned_cols=108 Identities=20% Similarity=0.182 Sum_probs=61.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh------cCCCcc-----ccc-----------ccceeEEE-----------------EE
Q 030149 17 EARILVLGLDNAGKTTILYRLQ------MGEVVS-----TIP-----------TIGFNVET-----------------VQ 57 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~------~~~~~~-----~~~-----------t~~~~~~~-----------------~~ 57 (182)
...++++|++|+||||++..+. +.+..- +.+ ..+..... ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4578889999999999999985 222110 111 00110000 00
Q ss_pred EcCeEEEEEEcCCCCC--Ccc-hhh-----hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecC
Q 030149 58 YNNIKFQVWDLGGQTS--IRP-YWR-----CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQ 128 (182)
Q Consensus 58 ~~~~~~~~~D~~g~~~--~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~ 128 (182)
..++.+.++||||... ... +.. .....+|.+++|+|+..... .......+.. ..+ ..+|+||.
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCC
Confidence 1467899999999776 322 111 12346899999999864321 2222222211 244 67899999
Q ss_pred CCCC
Q 030149 129 DLPG 132 (182)
Q Consensus 129 Dl~~ 132 (182)
|...
T Consensus 250 D~~~ 253 (297)
T 1j8m_F 250 DGTA 253 (297)
T ss_dssp GGCT
T ss_pred CCCc
Confidence 9753
No 233
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.04 E-value=2.3e-05 Score=58.55 Aligned_cols=110 Identities=21% Similarity=0.217 Sum_probs=62.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh-------cCCCc-----ccccc-----------cceeEEE--------------E--
Q 030149 16 KEARILVLGLDNAGKTTILYRLQ-------MGEVV-----STIPT-----------IGFNVET--------------V-- 56 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~-------~~~~~-----~~~~t-----------~~~~~~~--------------~-- 56 (182)
+...|+++|.+|+||||++..+. +.+.. .+.+. .+..... +
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34678899999999999999986 32221 11110 0111000 0
Q ss_pred -EEcCeEEEEEEcCCCCCCcchhh------hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecC
Q 030149 57 -QYNNIKFQVWDLGGQTSIRPYWR------CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQ 128 (182)
Q Consensus 57 -~~~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~ 128 (182)
...++.+.++||||......... .....++.+++|+|+...... ......+.. ..+ .-+|+||.
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~-----~l~i~gvVlnK~ 250 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE-----ALPLTGVVLTKV 250 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH-----HSCCCCEEEECT
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc-----cCCCeEEEEecC
Confidence 01467899999999765432211 124468999999998654322 122222211 233 34689999
Q ss_pred CCCCC
Q 030149 129 DLPGA 133 (182)
Q Consensus 129 Dl~~~ 133 (182)
|....
T Consensus 251 D~~~~ 255 (433)
T 2xxa_A 251 DGDAR 255 (433)
T ss_dssp TSSSC
T ss_pred CCCcc
Confidence 97543
No 234
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.04 E-value=3.5e-07 Score=69.14 Aligned_cols=86 Identities=24% Similarity=0.303 Sum_probs=50.5
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE----cCeEEEEEEcCCCCC--Ccchh--------
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY----NNIKFQVWDLGGQTS--IRPYW-------- 78 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~--~~~~~-------- 78 (182)
+......|+++|.+||||||+.+++.........++...+...+.. ......+||..|.+. .+..+
T Consensus 35 ~~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~ 114 (469)
T 1bif_A 35 MTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV 114 (469)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999754322222222211111000 113446788888632 22222
Q ss_pred hhccCCCCeEEEEEeCCCcc
Q 030149 79 RCYFPNTQAIIYVVDSSDTE 98 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~ 98 (182)
..++...++.++|+|.++..
T Consensus 115 ~~~l~~~~G~~vV~D~tn~~ 134 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNTT 134 (469)
T ss_dssp HHHHHTTCCSEEEEESCCCS
T ss_pred HHHHHhCCCCEEEEeCCCCC
Confidence 44555678889999998873
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.93 E-value=1.9e-05 Score=59.10 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=23.8
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...+..-|.|+|++++|||+|+|++++
T Consensus 63 ~~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 63 RDKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TTSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHhh
Confidence 346778899999999999999999985
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.83 E-value=1.1e-05 Score=53.00 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+++++|++|||||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998753
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.74 E-value=1.7e-05 Score=52.14 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
-.++++|++|||||||++.+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999753
No 238
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.71 E-value=2.1e-05 Score=51.60 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=24.7
Q ss_pred HhhhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 8 LFSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 8 ~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.++....+.-.+++.|++|+|||||++.+.+
T Consensus 29 ~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 29 FVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp HHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred HHHhccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34444434567899999999999999999864
No 239
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.70 E-value=2.4e-05 Score=53.97 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=21.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHh
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
..+...|+++|++||||||+++.+.
T Consensus 24 ~~~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 24 ASKLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp --CCCEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3455789999999999999999998
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.70 E-value=2e-05 Score=52.61 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
-.++++|++|||||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999975
No 241
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.66 E-value=3.4e-05 Score=51.40 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=23.1
Q ss_pred hhcCCcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 11 SLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+....+..-|+++|++|||||||++.|.+.
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 344456677899999999999999999753
No 242
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.63 E-value=0.0015 Score=46.39 Aligned_cols=69 Identities=9% Similarity=0.133 Sum_probs=43.6
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEE-EEeecCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVL-IFANKQDL 130 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~Dl 130 (182)
.+.+.++|+|+...... ....+..+|.+|++...+ ..+.......+..+.......+.+++ +|+|+++.
T Consensus 156 ~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 47899999988544322 223467799999999864 33445555545544332223455654 89999984
No 243
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.62 E-value=2.9e-05 Score=51.23 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030149 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~ 40 (182)
-++++|++||||||+++.+.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999753
No 244
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.62 E-value=3e-05 Score=51.78 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
--++++|++|||||||++.+.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 46899999999999999999764
No 245
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.60 E-value=3.9e-05 Score=51.57 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..+...|+|+|++|||||||++.+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35667899999999999999999864
No 246
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.59 E-value=3.4e-05 Score=51.79 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+---++++|++|||||||++.+.+-
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3346899999999999999999764
No 247
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.58 E-value=3.6e-05 Score=50.13 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=18.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 030149 18 ARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~ 38 (182)
--++++|++|||||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 458899999999999999754
No 248
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.58 E-value=0.00061 Score=45.32 Aligned_cols=68 Identities=15% Similarity=0.100 Sum_probs=45.5
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhc-ccCCCeEEEEeecCCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEE-ELRGAVVLIFANKQDLP 131 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~Dl~ 131 (182)
.+.+.++|+|+.. .......+..+|.+++++..+... ......+..+.... ..++.++.+|+|++|..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 5789999999866 334445566799999999876544 44444444443221 13456789999999954
No 249
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.57 E-value=3.8e-05 Score=52.05 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+.-.++++|++|||||||++.+.+.
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4456899999999999999999763
No 250
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.57 E-value=5.1e-05 Score=50.10 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.-.++++|++||||||+++.+.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 356899999999999999999865
No 251
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.57 E-value=4e-05 Score=52.04 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+---++++|++|||||||++.+.+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3456889999999999999999764
No 252
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.56 E-value=5.4e-05 Score=50.89 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=22.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
.+..-++++|++||||||+++.+....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 344568999999999999999997653
No 253
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.52 E-value=5.1e-05 Score=52.08 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+--.++++|+.|||||||++.+.+-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34468999999999999999998643
No 254
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.52 E-value=5.8e-05 Score=49.86 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030149 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~ 40 (182)
|+|+||+|||||||++.+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999753
No 255
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.50 E-value=6.7e-05 Score=48.60 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCCHHHHHHHH
Q 030149 18 ARILVLGLDNAGKTTILYRL 37 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~ 37 (182)
..|++.|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 256
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.48 E-value=0.00013 Score=47.70 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=25.4
Q ss_pred HHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 6 TRLFSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 6 ~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+++.+.+.......+++.|++|+|||++++.+..
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHH
Confidence 3344444444557799999999999999999864
No 257
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.47 E-value=9.5e-05 Score=48.67 Aligned_cols=27 Identities=37% Similarity=0.380 Sum_probs=22.9
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..++...|+++|.+||||||+.+.+..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345667899999999999999999864
No 258
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.47 E-value=6.7e-05 Score=48.23 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=22.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
.+--.++++|+.|||||||++.+.+.-
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344468999999999999999997654
No 259
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.46 E-value=8e-05 Score=49.74 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
...|+++|++||||||+++.+.+.-
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999997643
No 260
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.46 E-value=6e-05 Score=56.09 Aligned_cols=66 Identities=17% Similarity=0.094 Sum_probs=37.3
Q ss_pred cCeEEEEEEcCCCCCCcch-hh-----hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 59 NNIKFQVWDLGGQTSIRPY-WR-----CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~-~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
.++.+.++||||....... .. ...-.+|.+++|+|+..... .......+... -...-+|+||.|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~---av~~a~~f~~~----l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE---ALSVARAFDEK----VGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHHH----TCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHH---HHHHHHHHHhc----CCceEEEEeCcCCc
Confidence 3568999999996554221 11 11225889999999854321 22222222111 12346788999964
No 261
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.46 E-value=6.6e-05 Score=48.74 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
..|+++|++||||||+.+.+.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 262
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.46 E-value=7.2e-05 Score=50.25 Aligned_cols=24 Identities=33% Similarity=0.267 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|+++|++|||||||++.+.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999865
No 263
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.46 E-value=6.6e-05 Score=51.13 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998643
No 264
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.45 E-value=0.0001 Score=48.49 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+..+|+++|.+||||||+.+.+...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999998754
No 265
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.44 E-value=0.00011 Score=48.98 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=22.9
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.+...|++.|.+||||||+.+.|..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345667899999999999999999864
No 266
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.44 E-value=8.2e-05 Score=51.19 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999998643
No 267
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.43 E-value=8.2e-05 Score=49.80 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+...|+++|++||||||+++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4457899999999999999999653
No 268
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.42 E-value=8.2e-05 Score=52.25 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998643
No 269
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.42 E-value=9.3e-05 Score=53.83 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEV 42 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~ 42 (182)
-.++++|++|+|||||+|.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4789999999999999999997554
No 270
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.42 E-value=8.3e-05 Score=49.07 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 271
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.42 E-value=0.00013 Score=52.27 Aligned_cols=25 Identities=24% Similarity=0.110 Sum_probs=21.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHh
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
..+.+-|+++|++|||||||++.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3566789999999999999999884
No 272
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.41 E-value=0.0001 Score=47.72 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.|++.|++||||||+.+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 273
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.41 E-value=9.1e-05 Score=50.07 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998653
No 274
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.41 E-value=8.7e-05 Score=51.76 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+--.++++|+.|||||||++.+.+-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999998643
No 275
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.40 E-value=0.00011 Score=47.92 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..|++.|.+||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 276
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.40 E-value=9.8e-05 Score=50.73 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+--.++++|+.|||||||++.+.+-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999998643
No 277
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.40 E-value=9.1e-05 Score=51.78 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
--.++++|+.|||||||++.+.+-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 346899999999999999999864
No 278
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.39 E-value=9.8e-05 Score=51.47 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=21.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.-.++|+|++||||||+++.+.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 4445799999999999999999875
No 279
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.39 E-value=0.00011 Score=49.04 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|+++|++||||||+++.+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999864
No 280
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.38 E-value=9.5e-05 Score=51.42 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999997643
No 281
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.38 E-value=0.00012 Score=48.19 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...|++.|.+||||||+.+.+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999853
No 282
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.38 E-value=0.00011 Score=50.83 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
-.++++|+.|||||||++.+.+-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999765
No 283
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.38 E-value=0.00011 Score=50.64 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|+.|||||||++.+.+-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999999999764
No 284
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.38 E-value=0.00011 Score=49.49 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 030149 18 ARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~ 38 (182)
++|++.|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999985
No 285
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.37 E-value=0.00011 Score=49.06 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....|+++|.+||||||+.+.|..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
No 286
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.37 E-value=0.00012 Score=49.36 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999853
No 287
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.37 E-value=9.8e-05 Score=48.91 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999999875
No 288
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.37 E-value=0.00012 Score=50.04 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998643
No 289
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.37 E-value=0.00014 Score=47.34 Aligned_cols=24 Identities=13% Similarity=0.368 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|+++|++||||||+.+.+.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
No 290
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.36 E-value=0.00011 Score=51.28 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|+.|||||||++.+.+-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3346899999999999999999864
No 291
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.36 E-value=0.00013 Score=48.59 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=22.6
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...+...|+++|++||||||+.+.+.+
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 335567899999999999999999864
No 292
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.35 E-value=0.00014 Score=49.39 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...|+++|++||||||+.+.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 293
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.35 E-value=0.00012 Score=50.95 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+--.++++|+.|||||||++.+.+-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999998643
No 294
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.35 E-value=0.00011 Score=50.49 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998643
No 295
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.34 E-value=0.0001 Score=49.62 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
-.++++|+.|||||||++.+.+-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999865
No 296
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.34 E-value=0.00013 Score=50.85 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|+.|||||||++.+.+-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3346899999999999999999864
No 297
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.33 E-value=0.00013 Score=50.61 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
-.++++|+.|||||||++.+.+-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 298
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.33 E-value=0.00012 Score=50.59 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 468999999999999999998653
No 299
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.33 E-value=0.00015 Score=47.87 Aligned_cols=24 Identities=38% Similarity=0.361 Sum_probs=20.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|++.|.+||||||+.+.+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998853
No 300
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.33 E-value=0.00012 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++.-.++|+|++|||||||++.+.+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 4556799999999999999999863
No 301
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.33 E-value=0.00013 Score=48.75 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+|+|+|++||||||+.+.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999875
No 302
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.33 E-value=0.00016 Score=47.52 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...|+++|.+||||||+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 303
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.33 E-value=0.00013 Score=51.00 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|+.|||||||++.+.+-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3346899999999999999999875
No 304
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.32 E-value=0.00015 Score=48.67 Aligned_cols=22 Identities=36% Similarity=0.382 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++|+++|+|||||+|....+..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999863
No 305
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.32 E-value=0.00016 Score=47.75 Aligned_cols=24 Identities=38% Similarity=0.409 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|++.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
No 306
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.31 E-value=0.00014 Score=47.56 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
...++++|++|||||||++++...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 346899999999999999999753
No 307
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.31 E-value=0.00015 Score=51.09 Aligned_cols=25 Identities=40% Similarity=0.553 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
--.++++|+.|||||||++.+.+-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468999999999999999998643
No 308
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.31 E-value=0.00019 Score=46.87 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=24.2
Q ss_pred HhhhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 8 LFSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 8 ~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.+.+.......+++.|++|+|||+++..+..
T Consensus 34 l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 34 AIQILSRRTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp HHHHHTSSSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHhCCCCCceEEECCCCCCHHHHHHHHHH
Confidence 33333334566889999999999999999864
No 309
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.31 E-value=0.00016 Score=48.08 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999864
No 310
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.30 E-value=0.00015 Score=50.87 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|+.|||||||++.+.+-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3346899999999999999999764
No 311
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.30 E-value=0.00016 Score=48.32 Aligned_cols=22 Identities=27% Similarity=0.116 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.|+++|++||||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 312
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.30 E-value=0.00015 Score=51.81 Aligned_cols=26 Identities=31% Similarity=0.112 Sum_probs=22.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..+...|+|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 35667899999999999999999864
No 313
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.30 E-value=0.00017 Score=47.99 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|+++|++||||||+.+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345899999999999999999863
No 314
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.30 E-value=0.00017 Score=47.30 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...|+++|++||||||+.+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999853
No 315
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.29 E-value=0.0002 Score=46.66 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..|++.|.+||||||+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 316
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.29 E-value=0.00014 Score=50.42 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999998653
No 317
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.29 E-value=0.00019 Score=48.06 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|++.|.+||||||+.+.+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
No 318
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.29 E-value=0.00019 Score=49.48 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.++|++.|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999863
No 319
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.29 E-value=0.00017 Score=49.75 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=21.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+...|+++|+.|||||||++.+.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4556799999999999999999865
No 320
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.29 E-value=0.00014 Score=50.79 Aligned_cols=26 Identities=27% Similarity=0.255 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+--.++++|+.|||||||++.+.+-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33468899999999999999997643
No 321
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.27 E-value=0.00016 Score=49.73 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=19.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
+---++++|++|||||||++.++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 34468899999999999999886
No 322
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.27 E-value=0.00028 Score=47.08 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+...|+++|++||||||+++.+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999863
No 323
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.27 E-value=0.00019 Score=48.00 Aligned_cols=26 Identities=38% Similarity=0.408 Sum_probs=22.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+...|+++|++||||||+.+.+.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999764
No 324
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.27 E-value=0.00018 Score=51.16 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEV 42 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~ 42 (182)
-.++++|++|||||||++.+.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 4689999999999999999986543
No 325
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.27 E-value=9.2e-05 Score=50.53 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=16.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh-cC
Q 030149 17 EARILVLGLDNAGKTTILYRLQ-MG 40 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~-~~ 40 (182)
.--++++|++||||||+++.+. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999998 54
No 326
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.26 E-value=0.00018 Score=47.42 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.|++.|.+||||||+.+.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 327
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.26 E-value=0.0002 Score=48.42 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|+++|.+||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999853
No 328
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.26 E-value=0.00016 Score=52.73 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.-.++|+|++||||||+++.+.+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3344899999999999999999864
No 329
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.26 E-value=0.00014 Score=49.30 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
---++++|++|||||||++.+.+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999976
No 330
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.26 E-value=4.8e-05 Score=54.23 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
.-.++++|++|+|||||+|.+.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 3589999999999999999998654
No 331
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.25 E-value=0.00019 Score=50.05 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
No 332
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.24 E-value=0.00021 Score=47.53 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=23.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
++...|+|+|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 56678999999999999999999764
No 333
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.23 E-value=0.00024 Score=47.27 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+...|++.|.+||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999754
No 334
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.23 E-value=0.0002 Score=48.27 Aligned_cols=22 Identities=36% Similarity=0.372 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999854
No 335
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.23 E-value=7.8e-05 Score=48.57 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.++|+|++|||||||++.+.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 336
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.23 E-value=0.00018 Score=51.20 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 030149 18 ARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~ 38 (182)
-.++++|++|+|||||+|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 337
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.22 E-value=0.00023 Score=47.02 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|++.|.+||||||+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999863
No 338
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.21 E-value=0.00024 Score=50.28 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=21.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHh
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
..+...|+|+|++|||||||++.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3567889999999999999998874
No 339
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.21 E-value=0.00023 Score=46.53 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=21.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
++...|++.|.+||||||+.+.+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 345679999999999999999986
No 340
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.21 E-value=0.00027 Score=50.50 Aligned_cols=25 Identities=28% Similarity=0.169 Sum_probs=21.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+...|+|+|++|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999999865
No 341
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.20 E-value=0.00019 Score=52.24 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
--++++|++|||||||++.+.+-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 457999999999999999998643
No 342
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.20 E-value=0.00023 Score=48.41 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
+...|++.|.+||||||+.+.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999986
No 343
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.19 E-value=0.00013 Score=51.93 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|++|||||||++.+.+-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 4457899999999999999999753
No 344
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.19 E-value=0.0003 Score=48.74 Aligned_cols=24 Identities=33% Similarity=0.268 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.+...|+++|++||||||+.+.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999997
No 345
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.18 E-value=0.00018 Score=45.77 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.-.++++|++|+|||+|++.+.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999975
No 346
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.17 E-value=0.00027 Score=49.95 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+...|++.|++||||||+.+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999964
No 347
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.17 E-value=0.00019 Score=52.54 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.-+++|+|++|||||||++.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999764
No 348
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.17 E-value=0.00029 Score=45.39 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++|++.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 349
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.17 E-value=0.00024 Score=51.80 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+--.++++|+.|||||||++.+.+-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 33468999999999999999998643
No 350
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.17 E-value=0.00028 Score=47.35 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|++.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999863
No 351
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.16 E-value=0.00018 Score=47.00 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=16.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|++.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999863
No 352
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.16 E-value=0.00032 Score=46.70 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=21.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+...|++.|.+||||||+.+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999998863
No 353
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.16 E-value=0.00022 Score=50.06 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030149 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~ 40 (182)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999753
No 354
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.16 E-value=0.00024 Score=51.64 Aligned_cols=24 Identities=38% Similarity=0.365 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 468899999999999999998643
No 355
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.15 E-value=0.00026 Score=46.92 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...|++.|.+||||||+.+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 356
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.15 E-value=0.00025 Score=50.21 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
--.++++|+.|||||||++.+.+-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 346899999999999999999864
No 357
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.15 E-value=0.00025 Score=51.98 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
--++++|++|||||||++.+.+-.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 457899999999999999998644
No 358
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.15 E-value=0.00026 Score=46.06 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
+|+++|++||||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999853
No 359
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.15 E-value=0.00021 Score=52.21 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=22.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+.-.++|+|++|||||||++.+.+-
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34458999999999999999999864
No 360
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.15 E-value=0.00029 Score=47.20 Aligned_cols=24 Identities=38% Similarity=0.343 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 361
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.14 E-value=0.00028 Score=47.69 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.+.|+++|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999853
No 362
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.14 E-value=0.00026 Score=47.97 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|+++|++||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999853
No 363
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.14 E-value=0.00021 Score=51.54 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+.-.++++|++|||||||++.+.+-
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999864
No 364
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.14 E-value=0.00036 Score=51.92 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=21.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.-.++|+|++||||||+++.+++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHh
Confidence 4445799999999999999999975
No 365
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.14 E-value=0.00034 Score=45.39 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...++++|.+|||||||+.++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999874
No 366
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.14 E-value=0.00026 Score=51.58 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
--.++++|++|||||||++.+.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3467899999999999999998643
No 367
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.13 E-value=0.00027 Score=51.55 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
--.++++|+.|||||||++.+.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3467899999999999999998643
No 368
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.12 E-value=0.00036 Score=47.69 Aligned_cols=25 Identities=36% Similarity=0.396 Sum_probs=21.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+..+|+++|.+||||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999999863
No 369
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.12 E-value=0.00032 Score=47.60 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.|++.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999853
No 370
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.11 E-value=0.00045 Score=47.02 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....+++.|++|+|||+++..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999864
No 371
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.10 E-value=0.00028 Score=48.79 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030149 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999753
No 372
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.10 E-value=0.00029 Score=51.60 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 357899999999999999998654
No 373
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.10 E-value=0.00037 Score=51.10 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.-.++|+|++||||||+++.+.+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445799999999999999999975
No 374
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.10 E-value=0.0003 Score=51.47 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+--.++++|+.|||||||++.+.+-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 33467899999999999999998643
No 375
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.09 E-value=0.00028 Score=50.28 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=20.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
+.-.++++|++||||||+++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 34579999999999999999986
No 376
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.08 E-value=0.00026 Score=54.01 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.-.++|+|++||||||+++.+++-
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345999999999999999999753
No 377
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.08 E-value=0.00038 Score=45.89 Aligned_cols=21 Identities=38% Similarity=0.415 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 378
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.08 E-value=0.0004 Score=46.87 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.|+|.|.+||||||+.+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 379
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.07 E-value=0.0003 Score=49.85 Aligned_cols=25 Identities=12% Similarity=-0.037 Sum_probs=20.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....-+++.|+||+|||++++++..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445778889999999999999964
No 380
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.06 E-value=0.00046 Score=46.69 Aligned_cols=22 Identities=36% Similarity=0.354 Sum_probs=18.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.-|+++|+|||||+|....+..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3467799999999999998863
No 381
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.05 E-value=0.00036 Score=48.35 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.|+|+|++||||||+...+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999999863
No 382
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.05 E-value=0.00043 Score=47.31 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
++.+.|++.|++||||||+.+.+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999986
No 383
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.04 E-value=0.00043 Score=45.16 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|+++|.+||||||+.+.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999864
No 384
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.04 E-value=0.00044 Score=45.72 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 385
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.03 E-value=0.00036 Score=49.69 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=20.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.-.++++|+.||||||++..+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999999863
No 386
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.02 E-value=0.0081 Score=40.22 Aligned_cols=68 Identities=6% Similarity=-0.105 Sum_probs=44.5
Q ss_pred cCeEEEEEEcCCC-CCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 59 NNIKFQVWDLGGQ-TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 59 ~~~~~~~~D~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
..+.+.++|+|+. ... .....+..+|.+|+++..+ ..+.......+..+.... +.++.+++|+.|...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 4578999999987 433 3344566799999999865 334444444444433211 456889999999654
No 387
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.02 E-value=0.0006 Score=47.63 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=23.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
......+++.|++|+|||+++..+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 456678999999999999999999753
No 388
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.02 E-value=0.00024 Score=51.52 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 468999999999999999998643
No 389
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.01 E-value=0.00037 Score=51.33 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+-=.++++|++|||||||++.+.+-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 3346899999999999999999864
No 390
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.00 E-value=0.00069 Score=45.05 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999864
No 391
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.99 E-value=0.00051 Score=47.76 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..|+++|.+||||||+.+.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 392
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.99 E-value=0.00049 Score=48.46 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.+.+.|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 446789999999999999999986
No 393
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.98 E-value=0.0004 Score=50.15 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
-.+++.|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999753
No 394
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.98 E-value=0.00043 Score=45.34 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998853
No 395
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.98 E-value=0.00053 Score=47.43 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.+.|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998854
No 396
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.98 E-value=0.00042 Score=48.61 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030149 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999753
No 397
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.98 E-value=0.00048 Score=44.54 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.|++.|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 398
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.98 E-value=0.00057 Score=44.92 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..|++.|.+||||||+.+.+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999863
No 399
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.98 E-value=0.00034 Score=48.44 Aligned_cols=25 Identities=40% Similarity=0.348 Sum_probs=21.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+...|+++|++||||||+.+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999999854
No 400
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.98 E-value=0.00055 Score=49.31 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=21.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.-.++++|++||||||+++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999863
No 401
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.98 E-value=0.00057 Score=44.08 Aligned_cols=22 Identities=18% Similarity=0.540 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
-+|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999853
No 402
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.97 E-value=0.00059 Score=45.67 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..+++.|++|+|||+++..+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999864
No 403
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.96 E-value=0.00048 Score=46.67 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 030149 17 EARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.--++++|++|+|||||+..+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 3468899999999999999987
No 404
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.96 E-value=0.00077 Score=47.31 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.....+++.|++|+|||++++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45567999999999999999999753
No 405
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.96 E-value=0.00055 Score=45.76 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.-.+++.|+||+|||+++.++..
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 44699999999999999888864
No 406
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.96 E-value=0.00049 Score=44.99 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030149 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~ 38 (182)
-.+|+|+.|+|||||++++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999985
No 407
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.95 E-value=0.00017 Score=48.46 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.|+|.|.+||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 408
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.92 E-value=0.00053 Score=46.74 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+..-|++.|+.||||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45578999999999999999999764
No 409
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.92 E-value=0.00059 Score=47.22 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...+++.|++|+|||++++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 44699999999999999999975
No 410
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.91 E-value=0.00024 Score=51.65 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+--.++++|+.|||||||++.+.+-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33468899999999999999998653
No 411
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.00038 Score=49.83 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=25.0
Q ss_pred hhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 10 SSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 10 ~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
......+...+.+.|+||+|||++++.++.
T Consensus 38 ~~i~~~~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 38 DSLMSSQNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp HHHHTTCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred HHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 334456778999999999999999999864
No 412
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.89 E-value=0.0005 Score=48.69 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=20.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+---++|+|++|+|||||+..+.+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 334689999999999999999853
No 413
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.88 E-value=0.00097 Score=48.36 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.3
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.+..+|+++|++|+||||+...+.+
T Consensus 20 ~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 20 EDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 345567899999999999999987753
No 414
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.00047 Score=51.94 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+--.++|+|+.|||||||++.+.+-
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 34568999999999999999999754
No 415
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.85 E-value=0.0008 Score=45.18 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+...|+++|.+||||||+.+.+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999999864
No 416
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.84 E-value=0.00065 Score=45.68 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.--++++|++|+|||||+..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344689999999999999999976
No 417
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.83 E-value=0.001 Score=50.33 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=25.6
Q ss_pred HHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 6 TRLFSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 6 ~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.++..-+.....-+++++|++|+|||++++.+..
T Consensus 190 ~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred HHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHH
Confidence 3344444445567899999999999999999864
No 418
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.82 E-value=0.00083 Score=42.30 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=22.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.....|++.|++|+|||++.+.+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 45578999999999999999999754
No 419
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.82 E-value=0.00065 Score=47.01 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.-.|+++|++||||||+.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999864
No 420
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.81 E-value=0.00089 Score=45.68 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|++.|++||||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999999864
No 421
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.81 E-value=0.0007 Score=49.16 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
.+-=+++++|+.|+|||||++.+.+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344589999999999999999998753
No 422
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.81 E-value=0.00072 Score=46.18 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+---++++|++|+|||||+..+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 445689999999999999999976
No 423
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.80 E-value=0.00089 Score=44.40 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=21.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.....|++.|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999864
No 424
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.79 E-value=0.00081 Score=42.67 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030149 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~ 38 (182)
-.+|+|+.|+||||++.++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999974
No 425
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.79 E-value=0.00091 Score=48.31 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
..+++.|++|+||||++..+.+.
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999998753
No 426
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.78 E-value=0.00096 Score=48.61 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.-.++++|+.||||||++..+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345789999999999999999863
No 427
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.78 E-value=0.00067 Score=48.64 Aligned_cols=24 Identities=38% Similarity=0.385 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
..-++|+|..|||||||++.+.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 346789999999999999999864
No 428
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.77 E-value=0.0012 Score=46.82 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.....|++.|++|+|||++++.+...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 34567999999999999999999753
No 429
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.77 E-value=0.00098 Score=50.48 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
+.-.++++|+.|||||||++.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHH
Confidence 44578999999999999999986
No 430
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.73 E-value=0.0014 Score=47.36 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
..+++.|++|+|||++++.+...
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999998643
No 431
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.73 E-value=0.00098 Score=48.28 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..+++.|++|+||||+++.+.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999999865
No 432
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.0014 Score=48.89 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=22.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.....|++.|+||+|||+|++++.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 45678999999999999999999753
No 433
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.72 E-value=0.00058 Score=48.33 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=18.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.+.|+|.|++||||||+.+.|..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999998853
No 434
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.71 E-value=0.0017 Score=46.31 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....+++.|++|+|||+|+..+..
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998864
No 435
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.70 E-value=0.0011 Score=46.92 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..|+++|.+||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 436
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.69 E-value=0.0011 Score=51.05 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+-=.++++|+.|||||||++.+.+.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3346899999999999999999864
No 437
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.68 E-value=0.0013 Score=45.43 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....+++.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 445699999999999999999964
No 438
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.68 E-value=0.00095 Score=50.49 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
-.++++|+.|||||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999864
No 439
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.67 E-value=0.0012 Score=48.45 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=21.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.-.++++|++|+|||||++.+.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4455899999999999999999974
No 440
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.65 E-value=0.001 Score=49.80 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=22.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
.+-=+++++|++|+|||||++.+.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 344579999999999999999998653
No 441
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.65 E-value=0.0011 Score=51.63 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|+.|||||||++.+.+-
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3457899999999999999999754
No 442
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.64 E-value=0.0013 Score=46.52 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
....+++.|++|+|||++++.+...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4568999999999999999999753
No 443
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.0018 Score=48.34 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=21.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....-|++.|+||+|||++++++.+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4455799999999999999999974
No 444
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.64 E-value=0.0013 Score=46.64 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.....+++.|++|+|||++++.+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHH
Confidence 455689999999999999998765
No 445
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.63 E-value=0.0016 Score=44.57 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+...|+++|++||||||+.+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998864
No 446
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.0018 Score=48.35 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
-....-|++.|+||+|||+|++++.+
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 35567899999999999999999974
No 447
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.62 E-value=0.0012 Score=44.67 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 448
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.62 E-value=0.0011 Score=50.93 Aligned_cols=26 Identities=35% Similarity=0.394 Sum_probs=22.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+--.++++|+.|||||||++.+.+.
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 34456899999999999999999864
No 449
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.61 E-value=0.0012 Score=51.27 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|+.|||||||++.+.+-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999754
No 450
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.61 E-value=0.0016 Score=44.42 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=20.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..++++++|++||||||+...+..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 468999999999999999998853
No 451
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.59 E-value=0.0015 Score=43.43 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
....|+++|++|+|||+|...|...-
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34568999999999999999997543
No 452
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.59 E-value=0.0011 Score=46.42 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
---++|+|++|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999999864
No 453
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0017 Score=47.87 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=24.3
Q ss_pred hhhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 9 ~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
|...--....-|++.|+||+|||+|++++.+
T Consensus 174 f~~~gi~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 174 FESLGIAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp HHHHTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred HHhCCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 3333334567899999999999999999974
No 454
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.57 E-value=0.0016 Score=46.40 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
..-|+|+|++|||||+|...+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 346899999999999999999754
No 455
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.0013 Score=51.21 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|+.|+|||||++.+.+.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 3447899999999999999999864
No 456
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.56 E-value=0.0014 Score=47.88 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.++|.|++|+|||++++.+.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999874
No 457
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.56 E-value=0.0014 Score=47.91 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=18.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
..+ .+|+|+.|||||||++++.
T Consensus 23 ~g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEE-EEEECCTTSSHHHHHHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHH
Confidence 344 5599999999999999985
No 458
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.55 E-value=0.0081 Score=45.03 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=21.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHh
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
..+..-|.|+|+.++|||+|+|.++
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHH
Confidence 4567778899999999999999664
No 459
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.55 E-value=0.0013 Score=47.14 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...+++.|++|+|||+|++.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999864
No 460
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.54 E-value=0.0011 Score=51.66 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|+.|||||||++.+.+-
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999764
No 461
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.54 E-value=0.0012 Score=51.51 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|++|||||||++.+.+-
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4457999999999999999999753
No 462
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.50 E-value=0.0021 Score=47.89 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=22.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
....-|+++|.+||||||+.+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34567899999999999999998753
No 463
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.49 E-value=0.0016 Score=44.51 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=18.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 030149 17 EARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.--++++|++|+|||||+..++
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999987774
No 464
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.49 E-value=0.0015 Score=50.18 Aligned_cols=23 Identities=35% Similarity=0.238 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
.++++|+.|||||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998643
No 465
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.49 E-value=0.00089 Score=42.07 Aligned_cols=26 Identities=8% Similarity=0.158 Sum_probs=21.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.....|++.|++|+|||++.+.+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 34567999999999999999998654
No 466
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.49 E-value=0.0011 Score=46.05 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=21.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+...|++.|..||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999998643
No 467
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.48 E-value=0.0017 Score=50.69 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+-=.++++|+.|||||||++.+.+.
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 3346899999999999999999864
No 468
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.48 E-value=0.0018 Score=43.62 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...|++.|++||||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 469
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.48 E-value=0.002 Score=42.86 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.|+|.|++||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999854
No 470
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.47 E-value=0.0023 Score=46.06 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
..|+|+|++|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
No 471
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.46 E-value=0.001 Score=51.71 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|++|||||||++.+.+-
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 4457899999999999999988753
No 472
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.45 E-value=0.0021 Score=45.62 Aligned_cols=110 Identities=17% Similarity=0.158 Sum_probs=59.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc------C-CCcc-----cccc-----------cceeEEEE-----------EEcCe
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM------G-EVVS-----TIPT-----------IGFNVETV-----------QYNNI 61 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~------~-~~~~-----~~~t-----------~~~~~~~~-----------~~~~~ 61 (182)
+.-.++++|++|+||||++..+.. + +..- +.++ .+...... ...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 445899999999999999999852 2 1100 1110 00000000 01456
Q ss_pred EEEEEEcCCCCCCcch----hhhccC--CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 62 KFQVWDLGGQTSIRPY----WRCYFP--NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 62 ~~~~~D~~g~~~~~~~----~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
.+.++||+|....... ....+. ..+.+++++|++.. ...+..+ .......+ ..-+++||.|...
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~----~~~~~~l~-~~giVltk~D~~~ 253 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHI----VKRFSSVP-VNQYIFTKIDETT 253 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHH----TTTTSSSC-CCEEEEECTTTCS
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHH----HHHHhcCC-CCEEEEeCCCccc
Confidence 8999999997654321 112232 36778999987643 2223222 22211112 2346669999764
No 473
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.45 E-value=0.0023 Score=45.88 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..|+|+|++||||||+...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 474
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.44 E-value=0.002 Score=49.61 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
=.++++|+.|||||||++.+.+..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 475
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.43 E-value=0.0025 Score=46.42 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=21.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...-.+++.|++|+|||||++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999875
No 476
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.43 E-value=0.002 Score=42.14 Aligned_cols=21 Identities=33% Similarity=0.264 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030149 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~ 40 (182)
++|+|.++||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999855
No 477
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.42 E-value=0.0019 Score=46.57 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..|+|+|++|||||||...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4699999999999999999864
No 478
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.42 E-value=0.0026 Score=50.96 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=26.7
Q ss_pred hHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 5 FTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.++...+......++++.|+||+|||++++.+..
T Consensus 189 i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 189 IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp HHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHH
Confidence 34444444445667899999999999999999864
No 479
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.42 E-value=0.0024 Score=45.32 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
-.+++.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999864
No 480
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.41 E-value=0.0013 Score=51.11 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|++|||||||++.+.+-
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999998753
No 481
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.41 E-value=0.003 Score=50.62 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=27.1
Q ss_pred hHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 5 FTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++++...+......+++++|++|+|||++++.+..
T Consensus 195 i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 195 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHH
Confidence 34444444556678899999999999999999864
No 482
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.41 E-value=0.0021 Score=45.46 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....+++.|++|+|||++++.+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
No 483
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.0032 Score=46.87 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=22.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
....-|++.|+||+|||+|++++.+.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHH
Confidence 45678999999999999999999753
No 484
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.38 E-value=0.0018 Score=47.10 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+---+.|+|++|+|||||+..++..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456889999999999999999753
No 485
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.38 E-value=0.0022 Score=50.04 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
=.++++|+.|||||||++.+.+..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998743
No 486
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.38 E-value=0.0011 Score=46.04 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...+++.|++|+|||++++.+..
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHH
Confidence 34589999999999999999964
No 487
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.36 E-value=0.0033 Score=45.72 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
-.+++.|++|+|||+++..+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999864
No 488
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.35 E-value=0.0025 Score=45.74 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....|++.|++|+|||++++.+..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999999999964
No 489
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.35 E-value=0.0032 Score=43.87 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.-.+++.|+||+|||.|..++..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHh
Confidence 44599999999999999999975
No 490
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.33 E-value=0.0029 Score=45.07 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 030149 17 EARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.-.++++|++|+||||++..+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 4468899999999999999885
No 491
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.33 E-value=0.0026 Score=45.69 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
....|++.|++|+|||+|++.+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3467999999999999999999753
No 492
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.33 E-value=0.0027 Score=43.51 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...|++.|..||||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999999864
No 493
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.33 E-value=0.0016 Score=47.52 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.....+++.|++|+|||++++.+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999999874
No 494
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.0023 Score=49.94 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
.++++|+.|||||||++.+.+-.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 37999999999999999998754
No 495
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.003 Score=47.42 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....-|++.|+||+|||+|++++.+
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHh
Confidence 5667899999999999999999974
No 496
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.28 E-value=0.0029 Score=42.28 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030149 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~ 38 (182)
-.+|+|+.|+||||++.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 45788999999999999973
No 497
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.25 E-value=0.0028 Score=46.30 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..-.+++.|++|+|||++++.+..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999874
No 498
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.24 E-value=0.004 Score=44.21 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=20.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...+++.|++|+|||+++..+..
T Consensus 37 ~~~~~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 37 NIPHLLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp CCCCEEEESSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECcCCcCHHHHHHHHHH
Confidence 334599999999999999998864
No 499
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.23 E-value=0.0042 Score=46.67 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
..+++.|++|+|||++++.+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999999999753
No 500
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.20 E-value=0.0036 Score=44.61 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
..+++.|++|+|||+++..+...
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999999998643
Done!