Query 030153
Match_columns 182
No_of_seqs 140 out of 1066
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:21:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0766 MurA UDP-N-acetylgluco 100.0 3E-28 6.5E-33 212.9 16.0 145 36-182 1-145 (421)
2 COG0128 AroA 5-enolpyruvylshik 99.9 2.1E-27 4.6E-32 211.3 14.1 133 43-179 9-143 (428)
3 PRK09369 UDP-N-acetylglucosami 99.9 3.5E-24 7.5E-29 189.8 17.5 143 36-181 1-144 (417)
4 PLN02338 3-phosphoshikimate 1- 99.9 2E-24 4.4E-29 192.9 15.9 138 39-178 4-149 (443)
5 PRK11861 bifunctional prephena 99.9 3E-24 6.6E-29 201.2 15.4 141 33-178 237-379 (673)
6 PF00275 EPSP_synthase: EPSP s 99.9 5.6E-24 1.2E-28 189.1 13.7 137 41-180 1-141 (419)
7 PRK12830 UDP-N-acetylglucosami 99.9 3.1E-23 6.7E-28 183.4 17.6 142 36-180 1-142 (417)
8 TIGR01072 murA UDP-N-acetylglu 99.9 1.2E-22 2.7E-27 179.2 17.7 143 36-181 1-143 (416)
9 TIGR01356 aroA 3-phosphoshikim 99.9 9.5E-23 2.1E-27 179.7 14.3 124 49-179 1-126 (409)
10 cd01555 UdpNAET UDP-N-acetylgl 99.9 7.8E-22 1.7E-26 173.3 16.5 132 47-181 1-133 (400)
11 PRK14806 bifunctional cyclohex 99.9 5.4E-22 1.2E-26 187.0 14.8 151 25-178 286-442 (735)
12 PRK02427 3-phosphoshikimate 1- 99.9 2.5E-21 5.4E-26 171.8 15.3 132 40-177 6-139 (435)
13 PRK11860 bifunctional 3-phosph 99.9 3.7E-21 8E-26 180.2 15.9 138 36-178 4-143 (661)
14 cd01556 EPSP_synthase EPSP syn 99.8 3.2E-20 7E-25 162.8 15.2 130 47-180 1-131 (409)
15 cd01554 EPT-like Enol pyruvate 99.8 3.8E-20 8.2E-25 163.0 15.4 130 47-180 1-132 (408)
16 COG0128 AroA 5-enolpyruvylshik 99.7 6.4E-17 1.4E-21 144.4 12.2 136 39-181 221-364 (428)
17 KOG0692 Pentafunctional AROM p 99.6 4.7E-15 1E-19 132.7 10.4 132 47-179 105-244 (595)
18 cd01554 EPT-like Enol pyruvate 99.5 1.4E-12 3E-17 115.0 13.8 139 38-180 206-348 (408)
19 PF00275 EPSP_synthase: EPSP s 99.4 1.3E-13 2.7E-18 122.8 6.9 135 39-181 217-361 (419)
20 TIGR01356 aroA 3-phosphoshikim 99.4 1.4E-12 3.1E-17 115.1 12.0 138 38-181 204-347 (409)
21 PRK11861 bifunctional prephena 99.4 2.1E-12 4.6E-17 121.5 13.8 136 39-181 464-611 (673)
22 cd01556 EPSP_synthase EPSP syn 99.4 1.4E-11 3E-16 108.2 13.4 137 38-181 207-349 (409)
23 PLN02338 3-phosphoshikimate 1- 99.3 1.8E-11 3.9E-16 109.5 11.8 135 39-180 232-381 (443)
24 PRK11860 bifunctional 3-phosph 99.3 2.3E-11 5.1E-16 114.4 12.0 136 39-180 226-370 (661)
25 PRK09369 UDP-N-acetylglucosami 99.3 6.7E-11 1.4E-15 105.0 14.1 134 39-181 215-352 (417)
26 TIGR01072 murA UDP-N-acetylglu 99.3 7.7E-11 1.7E-15 104.1 14.4 135 38-180 213-351 (416)
27 PRK02427 3-phosphoshikimate 1- 99.3 4.6E-11 9.9E-16 106.2 12.6 137 39-181 223-373 (435)
28 cd01555 UdpNAET UDP-N-acetylgl 99.3 8.8E-11 1.9E-15 103.3 13.9 136 38-181 203-342 (400)
29 PRK14806 bifunctional cyclohex 99.2 1.4E-10 3E-15 109.9 13.8 140 38-181 515-668 (735)
30 PRK12830 UDP-N-acetylglucosami 99.2 2.7E-10 5.9E-15 100.9 14.0 135 38-181 212-350 (417)
31 cd01553 EPT_RTPC-like This dom 99.0 5.4E-09 1.2E-13 85.4 10.4 125 54-180 7-149 (211)
32 COG0766 MurA UDP-N-acetylgluco 98.8 4.2E-08 9.1E-13 86.9 11.1 126 47-182 153-282 (421)
33 KOG0692 Pentafunctional AROM p 97.4 6.9E-05 1.5E-09 68.2 2.3 127 48-180 338-480 (595)
34 cd01553 EPT_RTPC-like This dom 95.5 0.34 7.3E-06 39.4 11.6 44 62-107 98-149 (211)
35 TIGR03399 RNA_3prim_cycl RNA 3 94.1 0.95 2.1E-05 39.7 11.4 113 63-177 18-148 (326)
36 PRK04204 RNA 3'-terminal-phosp 93.3 1.5 3.3E-05 38.7 11.4 114 63-177 20-150 (343)
37 COG0430 RCL1 RNA 3'-terminal p 93.0 0.6 1.3E-05 41.1 8.2 114 63-177 20-150 (341)
38 cd00295 RNA_Cyclase RNA 3' pho 92.7 1.7 3.6E-05 38.3 10.6 113 63-176 16-145 (338)
39 TIGR03400 18S_RNA_Rcl1p 18S rR 91.1 3.7 8.1E-05 36.4 11.2 114 63-177 12-145 (360)
40 cd00875 RNA_Cyclase_Class_I RN 90.7 3.7 8E-05 36.2 10.7 111 63-174 16-143 (341)
41 cd00874 RNA_Cyclase_Class_II R 89.2 5.2 0.00011 35.1 10.3 114 63-177 16-146 (326)
42 PF01137 RTC: RNA 3'-terminal 88.1 1.6 3.5E-05 36.3 6.2 113 63-176 16-145 (228)
43 KOG3980 RNA 3'-terminal phosph 87.8 4.8 0.0001 35.6 9.1 121 54-176 10-147 (361)
44 PF09840 DUF2067: Uncharacteri 75.6 34 0.00074 27.7 9.2 95 83-181 8-108 (190)
45 TIGR01245 trpD anthranilate ph 65.7 13 0.00027 32.5 5.0 124 20-176 3-128 (330)
46 PRK00188 trpD anthranilate pho 55.7 33 0.00071 30.0 5.8 81 83-176 52-132 (339)
47 COG0602 NrdG Organic radical a 53.0 23 0.00051 28.9 4.2 33 146-178 73-105 (212)
48 TIGR03400 18S_RNA_Rcl1p 18S rR 51.2 78 0.0017 28.1 7.5 38 64-102 292-331 (360)
49 PF03484 B5: tRNA synthetase B 49.1 42 0.0009 22.3 4.3 29 87-117 22-51 (70)
50 COG2200 Rtn c-di-GMP phosphodi 48.0 72 0.0016 26.5 6.5 103 63-176 111-231 (256)
51 PF07833 Cu_amine_oxidN1: Copp 43.7 38 0.00082 22.8 3.6 26 89-114 9-34 (93)
52 PLN02641 anthranilate phosphor 42.3 82 0.0018 27.8 6.2 81 83-176 52-132 (343)
53 TIGR03365 Bsubt_queE 7-cyano-7 42.2 34 0.00073 28.3 3.6 36 145-180 73-109 (238)
54 PRK06078 pyrimidine-nucleoside 40.0 80 0.0017 28.9 5.9 81 83-177 52-134 (434)
55 TIGR02643 T_phosphoryl thymidi 38.5 87 0.0019 28.7 5.9 80 83-176 52-135 (437)
56 cd00874 RNA_Cyclase_Class_II R 38.4 2.3E+02 0.005 24.8 8.4 63 39-102 70-146 (326)
57 TIGR03399 RNA_3prim_cycl RNA 3 37.3 72 0.0016 28.0 5.0 38 63-101 288-326 (326)
58 PRK08136 glycosyl transferase 36.8 1.6E+02 0.0035 25.7 7.1 81 83-177 56-139 (317)
59 PRK14607 bifunctional glutamin 36.5 1.2E+02 0.0026 28.3 6.7 80 84-176 245-325 (534)
60 COG3286 Uncharacterized protei 36.2 2.4E+02 0.0053 23.1 9.1 90 84-182 11-112 (204)
61 PF03720 UDPG_MGDP_dh_C: UDP-g 35.2 53 0.0011 23.4 3.3 31 151-181 9-39 (106)
62 PHA02627 hypothetical protein; 35.1 31 0.00067 23.1 1.8 20 83-102 34-53 (73)
63 PRK04204 RNA 3'-terminal-phosp 34.8 1.4E+02 0.003 26.4 6.4 39 63-102 291-330 (343)
64 COG4004 Uncharacterized protei 34.5 48 0.001 23.9 2.8 24 84-109 12-35 (96)
65 COG4274 Uncharacterized conser 34.3 1.9E+02 0.0041 21.3 7.3 71 85-172 31-104 (104)
66 TIGR02644 Y_phosphoryl pyrimid 33.8 1.7E+02 0.0038 26.5 7.0 80 83-176 50-131 (405)
67 PF06076 Orthopox_F14: Orthopo 33.0 34 0.00074 22.9 1.8 20 83-102 34-53 (73)
68 smart00874 B5 tRNA synthetase 32.6 1E+02 0.0023 20.0 4.2 28 88-117 23-52 (71)
69 PRK09522 bifunctional glutamin 32.2 1.2E+02 0.0026 28.4 5.9 82 83-177 249-331 (531)
70 cd05125 Mth938_2P1-like Mth938 31.2 1.5E+02 0.0032 21.9 5.2 41 138-178 47-87 (114)
71 TIGR02826 RNR_activ_nrdG3 anae 30.1 43 0.00094 25.7 2.3 30 147-177 64-93 (147)
72 PRK10060 RNase II stability mo 29.5 1.6E+02 0.0034 28.0 6.3 82 84-176 541-636 (663)
73 PHA02780 hypothetical protein; 29.3 23 0.0005 23.7 0.5 28 154-181 30-57 (73)
74 PF01137 RTC: RNA 3'-terminal 29.1 2.1E+02 0.0045 23.7 6.3 38 63-101 186-225 (228)
75 PRK05820 deoA thymidine phosph 27.8 1.8E+02 0.0039 26.7 6.1 81 83-177 53-137 (440)
76 PRK07394 hypothetical protein; 27.7 3E+02 0.0065 24.2 7.4 85 83-177 58-144 (342)
77 PRK13782 phosphocarrier protei 27.7 92 0.002 21.3 3.4 31 147-177 5-35 (82)
78 COG0547 TrpD Anthranilate phos 26.6 2.1E+02 0.0046 25.3 6.2 82 83-177 53-135 (338)
79 COG0007 CysG Uroporphyrinogen- 24.6 4.3E+02 0.0093 22.3 10.9 105 54-180 13-117 (244)
80 COG0430 RCL1 RNA 3'-terminal p 24.5 2.4E+02 0.0051 25.1 6.0 52 50-101 87-149 (341)
81 PF07485 DUF1529: Domain of Un 23.9 77 0.0017 23.9 2.6 38 144-181 53-90 (123)
82 PF14085 DUF4265: Domain of un 23.5 1.5E+02 0.0033 21.7 4.1 20 159-178 65-84 (117)
83 cd00295 RNA_Cyclase RNA 3' pho 23.0 5.2E+02 0.011 22.7 8.0 62 39-101 70-145 (338)
84 cd03027 GRX_DEP Glutaredoxin ( 22.7 1.8E+02 0.0039 18.7 4.0 29 72-101 1-29 (73)
85 TIGR01158 SUI1_rel translation 22.2 2.5E+02 0.0054 20.2 4.9 39 74-114 41-80 (101)
86 PF04430 DUF498: Protein of un 21.4 1.4E+02 0.0031 21.4 3.5 41 138-178 46-86 (110)
87 cd01516 FBPase_glpX Bacterial 21.3 3.8E+02 0.0081 23.5 6.6 63 35-102 118-182 (309)
88 COG0213 DeoA Thymidine phospho 21.1 1.5E+02 0.0032 27.2 4.2 51 84-144 54-104 (435)
89 PRK09479 glpX fructose 1,6-bis 20.7 3.9E+02 0.0084 23.6 6.5 62 36-102 122-185 (319)
90 PRK12388 fructose-1,6-bisphosp 20.1 4.1E+02 0.009 23.4 6.6 62 36-102 119-182 (321)
91 PRK11359 cyclic-di-GMP phospho 20.1 3.6E+02 0.0078 25.5 6.9 82 84-176 678-773 (799)
92 cd00474 SUI1_eIF1 The SUI1/eIF 20.0 3E+02 0.0065 18.8 4.9 41 73-115 15-56 (77)
No 1
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=3e-28 Score=212.89 Aligned_cols=145 Identities=50% Similarity=0.812 Sum_probs=136.8
Q ss_pred ccceEEcCCCccceEEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCC
Q 030153 36 AETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKIEFNERNKEILVNTDG 115 (182)
Q Consensus 36 m~~i~I~~~~~l~g~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~~ 115 (182)
|+++.|.++.+++|+|+|.|.||+++++|+|++|++++++|+|+|. ..||+.++++|+.||++|++|. ++.++|+.++
T Consensus 1 M~k~~I~Gg~~L~G~V~IsGAKNaalpii~AtlLa~~~v~L~NvP~-l~DV~~~~~ll~~lG~~v~~~~-~~~~~i~~~~ 78 (421)
T COG0766 1 MDKLIIEGGNPLNGEVTISGAKNAALPLLAATLLADEPVTLTNVPD-LSDVETMLELLRNLGAKVERDG-DGELEIDAPN 78 (421)
T ss_pred CCEEEEeCCCccceEEEEeccHhHHHHHHHHHHhCCCcEEEeCCCC-hHHHHHHHHHHHHcCCEEEEcc-CceEEEcccc
Confidence 7889999999999999999999999999999999999999999999 9999999999999999999533 5889999988
Q ss_pred CCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCChHHHHHHHHHCCCEEEEcCccC
Q 030153 116 VGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEISYVFF 182 (182)
Q Consensus 116 ~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~~~~~~ 182 (182)
......|.+++...++|+++++|++++||+.++.++|+|.++.||++.|++.|++|||+++..++|+
T Consensus 79 i~~~~apy~~v~kmRASi~vlGplLaR~g~a~V~LPGGCaIG~RPvDlHl~gleaLGA~i~~e~g~i 145 (421)
T COG0766 79 INSTEAPYELVRKMRASILVLGPLLARFGKAKVSLPGGCAIGARPVDLHLKGLEALGAEIEIEHGYI 145 (421)
T ss_pred cccccCCHHHHHHHHhHHHHHHHHHhhcCceEECCCCCccCCCCchhHHHHHHHHcCCEEEEcCCEE
Confidence 7777888889999999999999999999999999999999999999999999999999999888875
No 2
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=99.95 E-value=2.1e-27 Score=211.29 Aligned_cols=133 Identities=28% Similarity=0.333 Sum_probs=119.6
Q ss_pred CCCccceEEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCCCCC
Q 030153 43 GPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKIEFNERNKEILVNTDGVGRVEPC 122 (182)
Q Consensus 43 ~~~~l~g~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~~~~~~~~~ 122 (182)
..++++|+|++|||||.++|++++|+|++|+++|+|++. ++|+++|++++++||++|+ .+++.++|.|.+. ....+
T Consensus 9 ~~~~l~G~v~~PgSKSishRalilaaLA~g~s~i~~~L~-s~D~~~tl~a~~~lG~~i~--~~~~~~~v~g~g~-~~~~~ 84 (428)
T COG0128 9 KPSPLRGTVRAPGSKSISHRALLLAALAEGESTITNLLD-SEDTLATLEALRALGARIE--KEGDTLVVRGTGG-ELKEP 84 (428)
T ss_pred cCCccceEEECCCCccHHHHHHHHHHHcCCceEEeeeec-cHhHHHHHHHHHHhCCeEE--ccCCEEEEeCCCC-CcCCC
Confidence 345699999999999999999999999999999999999 9999999999999999999 7779999999865 33444
Q ss_pred hh--hhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCChHHHHHHHHHCCCEEEEcC
Q 030153 123 LE--EMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEISY 179 (182)
Q Consensus 123 ~~--~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~~~ 179 (182)
+. +|+||||++||+++++|....+.++++|+++|++|||++++++|++|||+++..+
T Consensus 85 ~~~l~~GnSGTt~R~l~glla~~~~~~~~l~Gd~sl~~RPm~~l~~aLr~~Ga~i~~~~ 143 (428)
T COG0128 85 PAVLDCGNSGTTLRLLTGLLALGSPGETVLTGDESLRKRPMGPLVDALRQLGAKIDGRE 143 (428)
T ss_pred CceeeeccchhHHHHHHHHHhcCCCCeEEEECChhhhhCCcHHHHHHHHHCCcEEEecC
Confidence 33 4999999999999999864557899999999999999999999999999999865
No 3
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=99.92 E-value=3.5e-24 Score=189.78 Aligned_cols=143 Identities=49% Similarity=0.813 Sum_probs=123.1
Q ss_pred ccceEEcCCCccceEEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeC-CEEEEEcC
Q 030153 36 AETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKIEFNERN-KEILVNTD 114 (182)
Q Consensus 36 m~~i~I~~~~~l~g~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~-~~l~I~~~ 114 (182)
|+.++|++++.++|+|++|||||+++|+|++|+|++|+++|+|++. ++|++.++++|++||++|+ ..+ ++++|.|.
T Consensus 1 ~~~~~i~~~~~~~G~i~~pgsKS~~~r~l~~a~la~g~s~i~~~~~-~~dv~~t~~~l~~lG~~i~--~~~~~~~~i~g~ 77 (417)
T PRK09369 1 MDKLVIEGGKPLSGEVTISGAKNAALPILAASLLAEEPVTLTNVPD-LSDVRTMIELLRSLGAKVE--FDGNGTVTIDAS 77 (417)
T ss_pred CCEEEEeCCCCceEEEEccCcHHHHHHHHHHHHhCCCCEEEecCCC-cHHHHHHHHHHHHCCCEEE--EcCCCEEEEECC
Confidence 6778998877799999999999999999999999999999999999 9999999999999999999 544 78999886
Q ss_pred CCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCChHHHHHHHHHCCCEEEEcCcc
Q 030153 115 GVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEISYVF 181 (182)
Q Consensus 115 ~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~~~~~ 181 (182)
+......+....+.++++++|+++++++.+.+.+.++|++++++||+++++++|++||+++++.+++
T Consensus 78 ~~~~~~~~~~~~~~s~~s~~~l~~~~~~~~~~~~~~~g~~~l~~Rp~~~~~~~L~~lGa~v~~~~~~ 144 (417)
T PRK09369 78 NINNTEAPYELVKKMRASILVLGPLLARFGEAKVSLPGGCAIGARPVDLHLKGLEALGAEIEIEHGY 144 (417)
T ss_pred CCCCCcCCHHHHhhhhhHHHHHHHHhccCCceEEEecCCCccCCCchHHHHHHHHHCCCEEEEECCE
Confidence 5322222333467899999999999987655679999999999999999999999999999876543
No 4
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase
Probab=99.92 E-value=2e-24 Score=192.88 Aligned_cols=138 Identities=27% Similarity=0.358 Sum_probs=119.0
Q ss_pred eEEcCCCccceEEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCC
Q 030153 39 LTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKIEFNERNKEILVNTDGVGR 118 (182)
Q Consensus 39 i~I~~~~~l~g~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~~~~~ 118 (182)
++|.+.++++|+|++|||||.++|++++|+|++|+++|+|++. ++|++.++++|++||++|+++.++++++|.|.+..
T Consensus 4 ~~v~~~~~~~g~i~~p~sKs~~~r~l~~a~la~~~s~i~~~~~-~~D~~~~~~~l~~lG~~~~~~~~~~~~~i~~~~~~- 81 (443)
T PLN02338 4 ITLQPIKEISGTVKLPGSKSLSNRILLLAALSEGTTVVDNLLD-SDDIRYMLGALKTLGLNVEEDSENNRAVVEGCGGK- 81 (443)
T ss_pred eEecCCCccceEEEcCCcHHHHHHHHHHHHhCCCCEEEcCCCc-CHHHHHHHHHHHHcCCeEEecCCCCeEEEEecCCC-
Confidence 6777767799999999999999999999999999999999999 99999999999999999996444578999886532
Q ss_pred CCCC------hh-hhhhhhhHHHHHHHHhhhh-CCeEEEecCCCCCCCCChHHHHHHHHHCCCEEEEc
Q 030153 119 VEPC------LE-EMRKIRGGFFVIGPLLARF-GEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEIS 178 (182)
Q Consensus 119 ~~~~------~~-~~~~sgts~~~l~~lla~~-~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~~ 178 (182)
+..+ .. +|++||+++||+++++++. ++++++++|+++|++||+.++++.|++||++|++.
T Consensus 82 ~~~~~~~~~~~~i~~g~sgt~~r~l~~~~~~~~~~~~~~~~g~~~l~~Rp~~~l~~~L~~lGa~i~~~ 149 (443)
T PLN02338 82 FPVSGDSKEDVELFLGNAGTAMRPLTAAVTAAGGNASYVLDGVPRMRERPIGDLVDGLKQLGADVECT 149 (443)
T ss_pred cCCcccccccceEEcCCcchHHHHHHHHHHhCCCCceEEEECChhhccCCchHHHHHHHHCCCEEEEc
Confidence 2111 12 3999999999999988753 45789999999999999999999999999999754
No 5
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.92 E-value=3e-24 Score=201.23 Aligned_cols=141 Identities=23% Similarity=0.273 Sum_probs=123.2
Q ss_pred hhhccceEEcCCCccceEEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEE
Q 030153 33 IREAETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKIEFNERNKEILVN 112 (182)
Q Consensus 33 ~~~m~~i~I~~~~~l~g~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~ 112 (182)
...|+.++|+++++++|+|++|||||.++|+|++|+|++|+++|+|++. ++|++.++++|++||++|+ .+++.++|+
T Consensus 237 ~~~m~~~~v~~~~~l~G~i~vpgsKS~s~R~l~~AaLa~g~s~i~~~l~-s~D~~~~~~aL~~lGa~i~--~~~~~~~I~ 313 (673)
T PRK11861 237 GSHMEHLDLGPFSHAQGTVRLPGSKSISNRVLLLAALAEGETTVTNLLD-SDDTRVMLDALTKLGVKLS--RDGGTCVVG 313 (673)
T ss_pred CCccceEEEcCCCccceEEEcCCcHHHHHHHHHHHHhcCCCEEEcCCCC-CHHHHHHHHHHHHcCCeEE--ecCCEEEEE
Confidence 3458778998878899999999999999999999999999999999999 9999999999999999999 777889998
Q ss_pred cCCCCCCCCC-hh-hhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCChHHHHHHHHHCCCEEEEc
Q 030153 113 TDGVGRVEPC-LE-EMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEIS 178 (182)
Q Consensus 113 ~~~~~~~~~~-~~-~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~~ 178 (182)
|.+. .+..+ .. ++++||+++||+.+++++.. +.++++|+++|++||+++++++|++||+++++.
T Consensus 314 g~~~-~~~~~~~~i~~g~sGt~~r~L~~~~a~~~-g~~~i~G~~~L~~RPi~~ll~~L~~lGa~v~~~ 379 (673)
T PRK11861 314 GTRG-AFTAKTADLFLGNAGTAVRPLTAALAVNG-GEYRIHGVPRMHERPIGDLVDGLRQIGARIDYE 379 (673)
T ss_pred cCCC-CcCCCCceEecCCcchHHHHHHHHHHcCC-CeEEEECChhhccCChhHHHHHHHHCCCcEEeC
Confidence 7642 12222 22 48999999999999998754 568899999999999999999999999999854
No 6
>PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase. It transfers enolpryruvate from phosphoenolpyruvate to 3-phosphoshikimate and UDP-N-acetyl-alpha-D-glucosamine respectively. ; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 3R38_A 3SG1_A 3KR6_A 2Z2C_C 3SWD_K 3ISS_F 1A2N_A 3KQJ_A 1UAE_A 3VCY_D ....
Probab=99.91 E-value=5.6e-24 Score=189.08 Aligned_cols=137 Identities=30% Similarity=0.480 Sum_probs=111.5
Q ss_pred EcCCCccceEEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeEEEee-eCCEEEEEcCCCCCC
Q 030153 41 ITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKIEFNE-RNKEILVNTDGVGRV 119 (182)
Q Consensus 41 I~~~~~l~g~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~-~~~~l~I~~~~~~~~ 119 (182)
|+++++++|+|++|||||.++|.+++|+|++|+++|+|++. ++|+..++++|++||++|+++. ++..+++.|... .+
T Consensus 1 v~~~~~l~G~v~~pgsKs~s~rali~AaLa~g~s~i~n~~~-~~Dv~~~~~~l~~lG~~i~~~~~~~~~~~~~g~~~-~~ 78 (419)
T PF00275_consen 1 VEKPSPLSGTVRVPGSKSNSHRALIAAALAEGESRIRNVPD-SDDVEATIDALRALGAKISWDEENGDTVIISGNGG-SF 78 (419)
T ss_dssp EESSSEEEEEEE--B-HHHHHHHHHHHHHGBSEEEEES----SHHHHHHHHHHHHTT-EEEEEECTSEEEEEETTST-TC
T ss_pred CCCCCceeEEEEeCCccHHHHHHHHHHHHhcCCCeEEECCc-hHHHHHHHHhhcccCceeEEeeccceEEEeccccc-cc
Confidence 57888999999999999999999999999999999999999 9999999999999999998432 345677777432 34
Q ss_pred CCChh---hhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCChHHHHHHHHHCCCEEEEcCc
Q 030153 120 EPCLE---EMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEISYV 180 (182)
Q Consensus 120 ~~~~~---~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~~~~ 180 (182)
..+.+ .+++||+++||++++++.. .+.+.++|+++|++|||++++++|++||+++++.++
T Consensus 79 ~~~~~~~i~~g~Sgt~lr~L~~~~~~~-~~~~~~~G~~~l~~RP~~~l~~~L~~lGa~i~~~~~ 141 (419)
T PF00275_consen 79 SSPEDIVIDVGNSGTTLRFLLALLALA-PGPVTFTGDCSLGKRPMDPLLDALRQLGARISYLNG 141 (419)
T ss_dssp EESHHHHEEECCGHHHHHHHHHHHSEE-SSEEEEECSBTGGGSTCHHHHHHHHHTTEEEEEETT
T ss_pred ccccccceeeccChhHHhHHHHHHhee-eEEEEEeccchhhhCCHHHHHHHHhhCCCEEEEecC
Confidence 44522 3899999999999999874 367999999999999999999999999999998654
No 7
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=99.91 E-value=3.1e-23 Score=183.41 Aligned_cols=142 Identities=37% Similarity=0.708 Sum_probs=120.0
Q ss_pred ccceEEcCCCccceEEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCC
Q 030153 36 AETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKIEFNERNKEILVNTDG 115 (182)
Q Consensus 36 m~~i~I~~~~~l~g~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~~ 115 (182)
|+++.|++++.+.|+|++|||||+++++|+||+|++|+++|+|++. ++|++.++++|++||++|+ ..+++++|.|.+
T Consensus 1 ~~~~~i~~~~~~~G~v~vpgsKSs~~~ll~aa~la~g~s~i~n~~~-~~dv~~t~~~l~~lG~~i~--~~~~~~~I~g~~ 77 (417)
T PRK12830 1 MEKIVINGGKPLSGEVTISGAKNSAVALIPAAILADGPVTLDGVPD-ISDVHSLVDILEELGGKVK--RDGDTLEIDPTG 77 (417)
T ss_pred CceEEEeCCCcceEEEEccCcHHHHHHHHHHHHhcCCeEEEeCCCC-cHHHHHHHHHHHHCCCEEE--EcCCEEEEECCC
Confidence 6778898877799999999999999999999999999999999999 9999999999999999999 667899999854
Q ss_pred CCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCChHHHHHHHHHCCCEEEEcCc
Q 030153 116 VGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEISYV 180 (182)
Q Consensus 116 ~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~~~~ 180 (182)
......+......+++++||+++++++++...+.++|+++++.||+++++++|++||++++..++
T Consensus 78 ~~~~~~~~~~~~~~~as~~~~~~~~~~~~~~~v~~~g~~~l~~Rp~~~~~~~L~~lGa~v~~~~~ 142 (417)
T PRK12830 78 IQSMPLPNGKVKSLRASYYFMGALLGRFKKAVVGLPGGCDLGPRPIDQHIKGFEALGAEVTNEGG 142 (417)
T ss_pred CCCCCCCHHHHhhchhHHHHHHHHhcCCCceEEEecCCCccCCCcCHHHHHHHHHCCCEEEEcCC
Confidence 32222222234456778889988887655547999999999999999999999999999986554
No 8
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=99.90 E-value=1.2e-22 Score=179.20 Aligned_cols=143 Identities=50% Similarity=0.823 Sum_probs=123.7
Q ss_pred ccceEEcCCCccceEEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCC
Q 030153 36 AETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKIEFNERNKEILVNTDG 115 (182)
Q Consensus 36 m~~i~I~~~~~l~g~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~~ 115 (182)
|.+++|++++.++|+|++|||||+++|++++|+|++|+++|+|++. ++|++.++++|++||++|+ ..+++++|+|.+
T Consensus 1 ~~~~~v~~~~~~~g~i~~p~skS~~~r~l~~a~la~g~~~i~~~~~-~~d~~~~~~~l~~lG~~i~--~~~~~~~i~g~~ 77 (416)
T TIGR01072 1 MDKLVVEGGKPLSGEVTISGAKNAALPIIAATLLTDEPVTLTNVPD-LSDVKTTLDLLRNLGARVE--RDNNTLEINTPN 77 (416)
T ss_pred CceEEEeCCCCcEEEEEcCCcHHHHHHHHHHHHhCCCcEEEeCCCc-hHHHHHHHHHHHHCCCEEE--EcCCEEEEECCC
Confidence 6778898877799999999999999999999999999999999999 9999999999999999999 667889999876
Q ss_pred CCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCChHHHHHHHHHCCCEEEEcCcc
Q 030153 116 VGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEISYVF 181 (182)
Q Consensus 116 ~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~~~~~ 181 (182)
......+.+.....++++++++++++.++..++.+.|++++++||+++++++|++||+++++.+++
T Consensus 78 ~~~~~~~~~~s~~~ra~~~~~~~~la~~~~~~~~~~g~~~~~~rp~~~~i~~L~~~G~~v~~~~~~ 143 (416)
T TIGR01072 78 INSTEAPYELVRKMRASILVLGPLLARFGKAVVSLPGGCAIGARPVDLHLKGLKALGAEIVIEDGY 143 (416)
T ss_pred CCCCCCCHHHHhhhhHHHHHHHHHhccCCceEEEecCCCccCCCCHHHHHHHHHHCCCEEEEECCE
Confidence 434555655555567888898888876444578999999999999999999999999999876553
No 9
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=99.89 E-value=9.5e-23 Score=179.72 Aligned_cols=124 Identities=27% Similarity=0.301 Sum_probs=111.6
Q ss_pred eEEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCCCCChh--hh
Q 030153 49 GHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKIEFNERNKEILVNTDGVGRVEPCLE--EM 126 (182)
Q Consensus 49 g~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~~~~~~~~~~~--~~ 126 (182)
|+|++|||||.++|+|++|+|++|+++|+|++. ++|++.++++|+++|++|+ ++++.++|+|.+.. .+.. .+
T Consensus 1 g~i~~p~sKs~~~r~l~~a~la~g~~~i~~~~~-~~dv~~~~~~l~~lG~~i~--~~~~~~~i~g~~~~---~~~~~i~~ 74 (409)
T TIGR01356 1 GEIRAPGSKSITHRALILAALAEGETRVRNLLR-SEDTLATLDALRALGAKIE--DGGEVAVIEGVGGK---EPQAELDL 74 (409)
T ss_pred CeEECCCCHHHHHHHHHHHHhCCCCEEECCCCc-CHHHHHHHHHHHHcCCEEE--ecCCEEEEEccCCC---CCCCEEEe
Confidence 689999999999999999999999999999999 9999999999999999999 77889999986542 1222 38
Q ss_pred hhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCChHHHHHHHHHCCCEEEEcC
Q 030153 127 RKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEISY 179 (182)
Q Consensus 127 ~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~~~ 179 (182)
++||+++||+++++++.+ +++.+.|+++|++||++++++.|++||+++++.+
T Consensus 75 g~sgt~~r~l~~l~a~~~-~~~~i~g~~~l~~rp~~~l~~~L~~lGa~v~~~~ 126 (409)
T TIGR01356 75 GNSGTTARLLTGVLALAD-GEVVLTGDESLRKRPMGRLVDALRQLGAEISSLE 126 (409)
T ss_pred cCchHHHHHHHHHHHcCC-CeEEEECCcccccCCcHHHHHHHHHCCCEEEEcC
Confidence 999999999999999765 6899999999999999999999999999998653
No 10
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=99.88 E-value=7.8e-22 Score=173.29 Aligned_cols=132 Identities=51% Similarity=0.839 Sum_probs=115.6
Q ss_pred cceEEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeC-CEEEEEcCCCCCCCCChhh
Q 030153 47 LSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKIEFNERN-KEILVNTDGVGRVEPCLEE 125 (182)
Q Consensus 47 l~g~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~-~~l~I~~~~~~~~~~~~~~ 125 (182)
++|+|++|||||+++|++++|+|++|+++|+|++. ++|++.++++|++||++|+ ..+ +.++|.+.+...+.++.+.
T Consensus 1 ~~g~i~~p~sKS~~~r~l~~a~la~g~~~i~~~~~-~~dv~~~~~~L~~lG~~i~--~~~~~~~~I~~~~~~~~~~~~~~ 77 (400)
T cd01555 1 LSGEVRISGAKNAALPILAAALLTDEPVTLRNVPD-LLDVETMIELLRSLGAKVE--FEGENTLVIDASNINSTEAPYEL 77 (400)
T ss_pred CceEEEcCCcHHHHHHHHHHHHhCCCcEEEECCCC-hHHHHHHHHHHHHcCCEEE--ECCCCEEEEECCCCCCCcCCHHH
Confidence 47899999999999999999999999999999999 9999999999999999999 665 7899988654334456666
Q ss_pred hhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCChHHHHHHHHHCCCEEEEcCcc
Q 030153 126 MRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEISYVF 181 (182)
Q Consensus 126 ~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~~~~~ 181 (182)
+++++++++|++|+++..+...+.++|++++++||++.+++.|++||+++++.+++
T Consensus 78 ~~~~~t~~~~~~~l~~~~~~~~~~~~g~~~l~~rp~~~~~~~L~~lG~~i~~~~~~ 133 (400)
T cd01555 78 VRKMRASILVLGPLLARFGEARVSLPGGCAIGARPVDLHLKGLEALGAKIEIEDGY 133 (400)
T ss_pred HhhhhhHHHHHHHHhcCCCceEEEEcCCCccccCCHHHHHHHHHHCCCEEEEeCCE
Confidence 78889999999998875455678899999999999999999999999999876553
No 11
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.88 E-value=5.4e-22 Score=187.03 Aligned_cols=151 Identities=18% Similarity=0.239 Sum_probs=129.8
Q ss_pred CCCcccchhhhc----cceEEcCCCccceEEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeE
Q 030153 25 QIPTQTTQIREA----ETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKI 100 (182)
Q Consensus 25 ~~~~~~~~~~~m----~~i~I~~~~~l~g~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I 100 (182)
..|++++|+.-| +.++|+|+..+.|+|++|||||+++|.|++|+|++++++|+|++. ++|+..++++|++||++|
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~G~i~ipgskS~~~r~L~~a~la~g~s~i~~~~~-~~dv~~ti~~L~~lG~~v 364 (735)
T PRK14806 286 KMLARRAYVEAMNANDVSYSVLPGGAVKGTIRVPGDKSISHRSIMLGSLAEGVTEVEGFLE-GEDALATLQAFRDMGVVI 364 (735)
T ss_pred HHhcccccccccccCceEEEeccCCcccEEEEcCCChhHHHHHHHHHHhCCCcEEEcCCCc-cHHHHHHHHHHHHcCCEE
Confidence 578999999986 458888866789999999999999999999999999999999998 999999999999999999
Q ss_pred EEeeeCCEEEEEcCCCCCCCCCh-h-hhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCChHHHHHHHHHCCCEEEEc
Q 030153 101 EFNERNKEILVNTDGVGRVEPCL-E-EMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEIS 178 (182)
Q Consensus 101 ~~~~~~~~l~I~~~~~~~~~~~~-~-~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~~ 178 (182)
++ .+++.++|.|.+..++..+. . .+++|++++||++++++.. .+.+.+.|+++++.||++++++.|++||++++..
T Consensus 365 ~~-~~~~~~~i~g~~~~~~~~~~~~i~~~~s~ts~~ll~a~la~~-~~~v~i~G~~~l~~rp~~~l~~~L~~~Ga~i~~~ 442 (735)
T PRK14806 365 EG-PHNGRVTIHGVGLHGLKAPPGPLYMGNSGTSMRLLSGLLAAQ-SFDSVLTGDASLSKRPMERVAKPLREMGAVIETG 442 (735)
T ss_pred Ee-cCCCEEEEEcCCCCCCCCCCceeeccCchHHHHHHHHHHhcC-CCeEEEECChhhhhCChHHHHHHHHHCCCEEEcC
Confidence 93 24568899876543343332 2 3789999999999999864 4579999999999999999999999999999854
No 12
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.87 E-value=2.5e-21 Score=171.79 Aligned_cols=132 Identities=30% Similarity=0.381 Sum_probs=116.0
Q ss_pred EEcCCCccceEEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCC
Q 030153 40 TITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKIEFNERNKEILVNTDGVGRV 119 (182)
Q Consensus 40 ~I~~~~~l~g~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~~~~~~ 119 (182)
...++++++|+|++|||||.++|+|++|+|++|+++|+|++. ++|++.++++|++||++|+ + +.++|++.+..++
T Consensus 6 ~~~~~~~l~g~i~~p~sks~~~r~l~~a~La~g~s~i~~~~~-~~dv~~~~~~L~~lG~~i~--~--~~~~i~~~~~~~~ 80 (435)
T PRK02427 6 LIIPPSPLSGTVRVPGSKSISHRALLLAALAEGETTITNLLR-SEDTLATLNALRALGVEIE--D--DEVVVEGVGGGGL 80 (435)
T ss_pred ccCCCCCccEEEEcCCChHHHHHHHHHHHhcCCCEEEcCCCc-cHHHHHHHHHHHHcCCeEE--c--ceEEEEccCCCCC
Confidence 334556799999999999999999999999999999999999 9999999999999999999 6 6788998765444
Q ss_pred CCChh--hhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCChHHHHHHHHHCCCEEEE
Q 030153 120 EPCLE--EMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEI 177 (182)
Q Consensus 120 ~~~~~--~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~ 177 (182)
..+.+ .++++|+++||++++++.. ++++.+.|.+++++||+..+++.|++||+++++
T Consensus 81 ~~~~~~i~~~~sg~~~r~l~~laa~~-~~~~~i~g~~~l~~r~~~~l~~~L~~lGa~i~~ 139 (435)
T PRK02427 81 KEPEDVLDCGNSGTTMRLLTGLLALQ-PGEVVLTGDESLRKRPMGRLLDPLRQMGAKIEG 139 (435)
T ss_pred CCCCCEEEccCchHHHHHHHHHHHhC-CCeEEEECChhhccCChHHHHHHHHHCCCEEEe
Confidence 44444 3899999999999988865 468999999999999999999999999999986
No 13
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.87 E-value=3.7e-21 Score=180.20 Aligned_cols=138 Identities=23% Similarity=0.285 Sum_probs=118.6
Q ss_pred ccceEEcCCCccceEEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCC
Q 030153 36 AETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKIEFNERNKEILVNTDG 115 (182)
Q Consensus 36 m~~i~I~~~~~l~g~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~~ 115 (182)
|..+.|.|...++|+|.+|||||.++|++++|+|++|+++|+|++. ++|+..++++|++||++|+ .+++.++|+|.+
T Consensus 4 ~~~~~v~p~~~l~G~i~~pgsKs~s~R~l~lAaLa~g~s~i~~~l~-s~D~~~~l~aL~~LGa~i~--~~~~~i~I~g~g 80 (661)
T PRK11860 4 TEFLDLPPLLSAGGTVRLPGSKSISNRVLLLAALSEGTTTVRDLLD-SDDTRVMLDALRALGCGVE--QLGDTYRITGLG 80 (661)
T ss_pred ccceeecCCCcccEEEEcCCCHHHHHHHHHHHHhCCCCEEEccCCc-cHHHHHHHHHHHHcCCEEE--ecCCEEEEECCC
Confidence 4345676656689999999999999999999999999999999999 9999999999999999999 777889998865
Q ss_pred CCCCCC-Chh-hhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCChHHHHHHHHHCCCEEEEc
Q 030153 116 VGRVEP-CLE-EMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEIS 178 (182)
Q Consensus 116 ~~~~~~-~~~-~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~~ 178 (182)
. .+.. ... ++++||+++|+|+++++.. ++.++++|+.+|++||+.+|++.|++||++++..
T Consensus 81 ~-~l~~~~~~i~~g~sGtt~r~Ll~~~al~-~g~~~i~g~~~L~~RP~~~Ll~~L~~lGa~v~~~ 143 (661)
T PRK11860 81 G-QFPVKQADLFLGNAGTAMRPLTAALALL-GGEYELSGVPRMHERPIGDLVDALRQLGCDIDYL 143 (661)
T ss_pred C-CcCCCCceEEeCCchHHHHHHHHHHHcC-CCeEEEECCchhhcCChHHHHHHHHHCCCEEEEc
Confidence 2 1221 122 4899999999998888765 4678999999999999999999999999999854
No 14
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=99.84 E-value=3.2e-20 Score=162.77 Aligned_cols=130 Identities=30% Similarity=0.320 Sum_probs=112.4
Q ss_pred cceEEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCCCCChh-h
Q 030153 47 LSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKIEFNERNKEILVNTDGVGRVEPCLE-E 125 (182)
Q Consensus 47 l~g~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~~~~~~~~~~~-~ 125 (182)
++|+|++|||||.++|++++|+|++|+++|+|++. ++|+..++++|++||++|+ .+++.++|+|.+......... .
T Consensus 1 l~g~i~~~~sKs~~~r~l~~a~l~~g~~~i~~~~~-~~dv~~~~~~L~~lG~~i~--~~~~~~~i~g~~~~~~~~~~~i~ 77 (409)
T cd01556 1 LSGEITVPGSKSISHRALLLAALAEGESRIENLLD-SDDTLATLEALRALGAKIE--EEGGTVEIVGGGGLGLPPEAVLD 77 (409)
T ss_pred CcEEEEcCCchHHHHHHHHHHHhcCCCEEECCCCC-CHHHHHHHHHHHHcCCeEE--ecCCEEEEEcCCCCCCCCCceEE
Confidence 57899999999999999999999999999999999 9999999999999999999 667899999865432211112 3
Q ss_pred hhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCChHHHHHHHHHCCCEEEEcCc
Q 030153 126 MRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEISYV 180 (182)
Q Consensus 126 ~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~~~~ 180 (182)
+++++++.||+.++++.. ++++.+.|.+++++||++.+++.|++||++++..++
T Consensus 78 ~~~s~~s~~~l~~l~~~~-~~~~~i~g~~~l~~~~~~~~~~~L~~lGa~i~~~~~ 131 (409)
T cd01556 78 CGNSGTTMRLLTGLLALQ-GGDSVLTGDESLRKRPMGRLVDALRQLGAEIEGREG 131 (409)
T ss_pred cCCchHHHHHHHHHHHcC-CCeEEEECCcccccCChHHHHHHHHHCCCEEEeCCC
Confidence 788999999999988754 568999999999999999999999999999987653
No 15
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=99.84 E-value=3.8e-20 Score=163.01 Aligned_cols=130 Identities=22% Similarity=0.296 Sum_probs=111.4
Q ss_pred cceEEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCCCCCh-h-
Q 030153 47 LSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKIEFNERNKEILVNTDGVGRVEPCL-E- 124 (182)
Q Consensus 47 l~g~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~~~~~~~~~~-~- 124 (182)
++|+|++|||||+++|+|++|++++++++|+|++. ++|+..++++|++||++|+ ++++.++|.+.+...+..+. .
T Consensus 1 ~~G~v~i~gskS~~~~~L~~a~la~g~~~i~~~~~-~~dv~~t~~~L~~lG~~i~--~~~~~~~v~g~~~~~~~~~~~~~ 77 (408)
T cd01554 1 LHGIIRVPGDKSISHRSLIFASLAEGETKVYNILR-GEDVLSTMQVLRDLGVEIE--DKDGVITIQGVGMAGLKAPQNAL 77 (408)
T ss_pred CceEEEcCCchHHHHHHHHHHHhCCCcEEEeCCCc-cHHHHHHHHHHHHcCCeEE--ecCCEEEEEecCCCCCCCCCceE
Confidence 47899999999999999999999999999999999 9999999999999999999 66788999986542232222 1
Q ss_pred hhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCChHHHHHHHHHCCCEEEEcCc
Q 030153 125 EMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEISYV 180 (182)
Q Consensus 125 ~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~~~~ 180 (182)
.++++++++||+.++++.. .+++.+.|.+++++||++++++.|++||+++++.++
T Consensus 78 ~~g~s~~~~~~l~a~~~~~-~~~v~~~G~~~l~~r~~~~l~~~L~~~Ga~i~~~~~ 132 (408)
T cd01554 78 NLGNSGTAIRLISGVLAGA-DFEVELFGDDSLSKRPMDRVTLPLKKMGASISGQEE 132 (408)
T ss_pred EccCccHHHHHHHHHHHcC-CCeEEEECCchhhcCChHHHHHHHHHCCCEEEECCC
Confidence 3678999999998888643 357999999999999999999999999999987554
No 16
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=99.71 E-value=6.4e-17 Score=144.39 Aligned_cols=136 Identities=23% Similarity=0.322 Sum_probs=111.0
Q ss_pred eEEcCCCccce-EEEccCCHHHHHHHHHHhccc-CCc-EEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCE-EEEEcC
Q 030153 39 LTITGPTQLSG-HVPISGSKNSSLCLLAATLLC-SNS-CLLHNVPTGLSDTKAMLSILRSLGAKIEFNERNKE-ILVNTD 114 (182)
Q Consensus 39 i~I~~~~~l~g-~v~vpgsKs~a~~~laAA~La-~g~-~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~~~-l~I~~~ 114 (182)
+.|+|++++.+ .+.||||.|+|.|+++|++++ +.+ ++++|+.. ..+-..++++|++|||+|+ +.++. ++|.+.
T Consensus 221 ~~i~~g~~~~~~~~~VpgD~SSAafflaAaai~~~~~~i~~~~v~~-~~~~~~~~~vl~~MGa~i~--~~~~~~l~V~~~ 297 (428)
T COG0128 221 FYIPGGQKLTPGDYDVPGDYSSAAFFLAAAAITPRSTGITLKNVQP-NPTDKGILDVLEKMGADIE--IGDDSVLRVRGS 297 (428)
T ss_pred EEECCCccccCceEEcCCChhhHHHHHHHHHhcCCCceeeeccCCc-CcchhHHHHHHHHcCCeEE--EccCceEEEeec
Confidence 77888775655 799999999999999999998 556 88889885 4555568899999999999 66555 589887
Q ss_pred C-CCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCC---CCChHHHHHHHHHCCCEEEEcCcc
Q 030153 115 G-VGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIG---ERPVDLYVRGLRALGAAVEISYVF 181 (182)
Q Consensus 115 ~-~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~---~Rpi~~l~~~L~~lGa~v~~~~~~ 181 (182)
+ +++.++|.+ ...+.+..+ +++|+++++++++.|.+++| ++|++.+.++|++||++|++.+|.
T Consensus 298 ~~l~gi~vd~~---~~pD~~p~l-AvlAa~A~g~t~I~n~~~lRvKEsDRi~a~a~eL~klG~~v~e~~Dg 364 (428)
T COG0128 298 GELKGIEVDMD---DMPDLAPTL-AVLAAFAEGTTRIRNAEELRVKESDRIAAMATELRKLGVEVEETEDG 364 (428)
T ss_pred CCccCeEeCcc---cCchHHHHH-HHHHHhcCCCeEEEchHHhhhcchhHHHHHHHHHHhcCcEEEecCCe
Confidence 6 777777654 334454444 67777999999999999998 899999999999999999998764
No 17
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=99.60 E-value=4.7e-15 Score=132.68 Aligned_cols=132 Identities=28% Similarity=0.348 Sum_probs=106.8
Q ss_pred cceEEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCC-CCCCCh--
Q 030153 47 LSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKIEFNERNKEILVNTDGVG-RVEPCL-- 123 (182)
Q Consensus 47 l~g~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~~~~-~~~~~~-- 123 (182)
+.+.+.+|||||...|++..|++.+|.+.++|+++ ++|+..++..|..+|..++..+++++..++|.+.. ......
T Consensus 105 i~~~i~~pgSKs~snralllaa~~eg~~~~~n~L~-sddt~~m~sal~~L~~~~~~we~~~~~vveG~gg~~~~~~~~~~ 183 (595)
T KOG0692|consen 105 ISGLIKLPGSKSLSNRALLLAALSEGTTVVDNLLN-SDDTNYMLSALKTLGLNVETWEENNRAVVEGCGGEFSIDSKSDI 183 (595)
T ss_pred hhceeeCCCCchhhhhHHHHHHHhccceecccccc-ccchhhhhhhHHHhccccceecCCCEEEEEcCCCeeeechhhhh
Confidence 45578999999888887777779999999999999 99999999999999966542155678999997653 122222
Q ss_pred hh-hhhhhhHHHHHHHHhhh----hCCeEEEecCCCCCCCCChHHHHHHHHHCCCEEEEcC
Q 030153 124 EE-MRKIRGGFFVIGPLLAR----FGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEISY 179 (182)
Q Consensus 124 ~~-~~~sgts~~~l~~lla~----~~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~~~ 179 (182)
++ .++.|+.+||++-++++ -+...++++|.+||+.|||++|++.|++.|++|++..
T Consensus 184 eLylgnagta~r~lt~~aa~v~~k~~~k~~Vl~g~hrmq~rPi~~LV~~l~q~GadI~~~~ 244 (595)
T KOG0692|consen 184 ELYLGNAGTAMRPLTEFAAAVTAKGGNKSYVLDGVHRMQERPIGDLVVGLKQLGADIECTL 244 (595)
T ss_pred hhccCccchhhhhHHHHHHHhhcCCCCceEEEecCcccccCCchHHHHHHHhcCCceEEec
Confidence 33 89999999999966655 2333488999999999999999999999999999754
No 18
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=99.45 E-value=1.4e-12 Score=115.00 Aligned_cols=139 Identities=22% Similarity=0.356 Sum_probs=102.7
Q ss_pred ceEEcCCCccce-EEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCC
Q 030153 38 TLTITGPTQLSG-HVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKIEFNERNKEILVNTDGV 116 (182)
Q Consensus 38 ~i~I~~~~~l~g-~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~~~ 116 (182)
.+.|++.+++.+ .+.+|+|.+++.++++++++++++++|+|+.. ..+...++++|++||++|+ ..++.++|++...
T Consensus 206 ~i~I~g~~~~~~~~~~i~~D~~~a~~~l~~~~l~~~~v~i~~~~~-~~~~~~~~~~L~~~G~~v~--~~~~~i~v~~~~~ 282 (408)
T cd01554 206 KIVVQGPQKLTGQKYVVPGDISSAAFFLVAAAIAPGRLVLQNVGI-NETRTGIIDVLRAMGAKIE--IGEDTISVESSDL 282 (408)
T ss_pred EEEECCCcccccceEEeCCChhHHHHHHHHHhhcCCeEEEecCCC-CchhhHHHHHHHHcCCEEE--EeCCeEEEecCCc
Confidence 466666555665 68999999999988898888999999999976 4445679999999999999 6667788876544
Q ss_pred CCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCC---CCChHHHHHHHHHCCCEEEEcCc
Q 030153 117 GRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIG---ERPVDLYVRGLRALGAAVEISYV 180 (182)
Q Consensus 117 ~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~---~Rpi~~l~~~L~~lGa~v~~~~~ 180 (182)
++.+++.+..+...+....+ .++|+++++++++.|..+++ ++++..+.+.|++||++++..++
T Consensus 283 ~~~~i~~~~~~~~~d~~p~l-~~~a~~a~g~~~i~~~~~lr~ke~dr~~~~~~~L~~~G~~i~~~~~ 348 (408)
T cd01554 283 KATEICGALIPRLIDELPII-ALLALQAQGTTVIKDAEELKVKETDRIFVVADELNSMGADIEPTAD 348 (408)
T ss_pred eeEEeccccCCCCchHHHHH-HHHHHcCCCcEEEECcccccccchhhHHHHHHHHHHcCCEEEEECC
Confidence 44433322111112232333 44555777889999988876 48999999999999999987655
No 19
>PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase. It transfers enolpryruvate from phosphoenolpyruvate to 3-phosphoshikimate and UDP-N-acetyl-alpha-D-glucosamine respectively. ; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 3R38_A 3SG1_A 3KR6_A 2Z2C_C 3SWD_K 3ISS_F 1A2N_A 3KQJ_A 1UAE_A 3VCY_D ....
Probab=99.45 E-value=1.3e-13 Score=122.83 Aligned_cols=135 Identities=28% Similarity=0.401 Sum_probs=98.0
Q ss_pred eEEcCCCc-cce-EEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHH---HHHH-HHHHcCCeEEEeeeC-CEEEE
Q 030153 39 LTITGPTQ-LSG-HVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTK---AMLS-ILRSLGAKIEFNERN-KEILV 111 (182)
Q Consensus 39 i~I~~~~~-l~g-~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~---~~l~-~L~~lGa~I~~~~~~-~~l~I 111 (182)
+.|+|.+. +.+ +++||||+|.|.++++||++++|+++|+|+.. ++.+ .+++ +|++||++|+ .++ +.+.+
T Consensus 217 ~~i~g~~~~~~~~~~~v~~D~s~Aa~~l~aa~l~~g~v~i~~~~~--~~~~gd~~~l~~iL~~mG~~i~--~~~~~~~~~ 292 (419)
T PF00275_consen 217 ISIPGGQYILPGCEYTVPGDWSSAAFFLAAAALTGGEVTIKNLPP--NSLQGDKEFLDDILRRMGAKIE--EEDDGVIVV 292 (419)
T ss_dssp EEEETTSSBBBSEEEE--B-HHHHHHHHHHHHHCTTEEEEESEEG--GGGHHHHHHHHHHHHHTTEEEE--EESEEEEEE
T ss_pred EEEEeccccccceeEEecCCHHHHHHHHHHHheeCcEEEEEecCc--hhhhhhHHHHHHHHHHhCCCcc--cCCCeeEEE
Confidence 77888777 777 89999999999999999999999999999986 4544 3566 9999999999 666 45555
Q ss_pred EcCCCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCC---CCChHHHHHHHHHCCCEEEEcCcc
Q 030153 112 NTDGVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIG---ERPVDLYVRGLRALGAAVEISYVF 181 (182)
Q Consensus 112 ~~~~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~---~Rpi~~l~~~L~~lGa~v~~~~~~ 181 (182)
.+....+..++ +.+.-+.+..+ .+++.+..+.+.+.|..+++ ++++..+++.|++||+++++.+|.
T Consensus 293 ~~~~~~~~~~d---i~~~pd~~p~l-~~~a~~a~g~t~~~g~~~lr~kesdR~~~~~~~L~klG~~~~~~~d~ 361 (419)
T PF00275_consen 293 GGSGLRGIEID---ISDAPDLAPTL-AVLAAFAEGETRISGVSHLRDKESDRIEAIVEELRKLGADIEEDGDG 361 (419)
T ss_dssp EETTSBEBEEE---EEBCSTTCHHH-HHHHHHHHHHEEEESEEEEEGSSSTTHHHHHHHHHHTTSEEEEETTE
T ss_pred ecccccccccc---cccCccchhHH-HHHHHHhhcceeccccceeeeehHhhHHHHHHHHhhcCCCEEEECCE
Confidence 55544333222 22222232223 44445566778899988886 799999999999999999987664
No 20
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=99.43 E-value=1.4e-12 Score=115.06 Aligned_cols=138 Identities=22% Similarity=0.335 Sum_probs=98.4
Q ss_pred ceEEcCCCccce-EEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHH-HHHHHHHHHcCCeEEEeeeCCEEEEEcC-
Q 030153 38 TLTITGPTQLSG-HVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDT-KAMLSILRSLGAKIEFNERNKEILVNTD- 114 (182)
Q Consensus 38 ~i~I~~~~~l~g-~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv-~~~l~~L~~lGa~I~~~~~~~~l~I~~~- 114 (182)
.+.|++.+.+.+ +++||+|.|++.++++|+++++|+++|+|+....... ..++++|++||++|+ ..++.++|.+.
T Consensus 204 ~i~I~g~~~l~~~~~~i~~D~ssa~~ll~aa~l~~g~i~i~~~~~~~~~~~~~~~~~L~~~Ga~i~--~~~~~i~v~~~~ 281 (409)
T TIGR01356 204 KIVVPGGQKYGPQGYDVPGDYSSAAFFLAAAAITGGRVTLENLGINPTQGDKAIIIVLEEMGADIE--VEEDDLIVEGAS 281 (409)
T ss_pred EEEECCCCccCCCeeECCCCHHHHHHHHHHHHhcCCEEEECCCCCCCCCCcHHHHHHHHHcCCeEE--EeCCeEEEEecC
Confidence 355666544665 7999999998888899998998899999987512222 346889999999999 77778999863
Q ss_pred CCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCC---CCChHHHHHHHHHCCCEEEEcCcc
Q 030153 115 GVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIG---ERPVDLYVRGLRALGAAVEISYVF 181 (182)
Q Consensus 115 ~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~---~Rpi~~l~~~L~~lGa~v~~~~~~ 181 (182)
.+++..++ ++...+..+++. +++++.++.+.+.|..+++ ++++..+++.|++||+++++.+|.
T Consensus 282 ~l~~~~~~---~~d~~d~~~~l~-~~aa~a~g~~~i~~~~~~~~~e~dr~~~~~~~L~~~G~~i~~~~d~ 347 (409)
T TIGR01356 282 GLKGIKID---MDDMIDELPTLA-VLAAFAEGVTRITGAEELRVKESDRIAAIAEELRKLGVDVEEFEDG 347 (409)
T ss_pred CCccEEEE---CCCChhHHHHHH-HHHHhCCCCEEEEChhHhhhcccHHHHHHHHHHHHcCCEEEEeCCe
Confidence 33333222 222223344443 3444566778888877664 589999999999999999887654
No 21
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.43 E-value=2.1e-12 Score=121.52 Aligned_cols=136 Identities=19% Similarity=0.222 Sum_probs=99.1
Q ss_pred eEEcCCCcc-c-eEEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCC--hHHHHHHHHHHHcCCeEEEeeeCCEEEEEcC
Q 030153 39 LTITGPTQL-S-GHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGL--SDTKAMLSILRSLGAKIEFNERNKEILVNTD 114 (182)
Q Consensus 39 i~I~~~~~l-~-g~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s--~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~ 114 (182)
+.|.+++.+ . +++.||+|.|++.++++||++++++++|+|+...+ .| ..++++|++||++|+ ..++.++|.+.
T Consensus 464 i~V~~~~~~~~~~~~~V~~D~SsAa~~laaAal~~g~v~I~g~~~~~~q~d-~~i~~iL~~mGa~i~--~~~~~i~i~~~ 540 (673)
T PRK11861 464 FTVPAGVRYRSPGTIMVEGDASSASYFLAAGALGGGPLRVEGVGRASIQGD-VGFANALMQMGANVT--MGDDWIEVRGI 540 (673)
T ss_pred EEEcCCcccCCCceeECCCChHHHHHHHHHHHhcCCeEEECCCCCCCCchH-HHHHHHHHHcCCcEE--EeCCeEEEeec
Confidence 556555334 4 48999999999999999999999999999997622 34 457899999999999 77777888752
Q ss_pred -----CCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCC---CCChHHHHHHHHHCCCEEEEcCcc
Q 030153 115 -----GVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIG---ERPVDLYVRGLRALGAAVEISYVF 181 (182)
Q Consensus 115 -----~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~---~Rpi~~l~~~L~~lGa~v~~~~~~ 181 (182)
.++++.++...+. +....+ +++|++.++.+++.|..+++ ++|+..+.+.|++||+++++.+|.
T Consensus 541 ~~~~~~l~~~~iD~~~~p---Dl~p~l-aalaa~a~G~s~I~~v~~lr~KEsdRi~a~~~eL~klGa~v~~~~d~ 611 (673)
T PRK11861 541 GHDHGRLAPIDMDFNLIP---DAAMTI-AVAALFADGPSTLRNIGSWRVKETDRIAAMATELRKVGATVEEGADY 611 (673)
T ss_pred cccCCCccceeeccccCc---hHHHHH-HHHHHhCCCCEEEECccccccccchHHHHHHHHHHHcCCEEEEeCCe
Confidence 2333333332222 222333 34444667788899988776 599999999999999999987664
No 22
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=99.35 E-value=1.4e-11 Score=108.17 Aligned_cols=137 Identities=23% Similarity=0.347 Sum_probs=99.4
Q ss_pred ceEEcCCCccce-EEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeC-CEEEEEcC-
Q 030153 38 TLTITGPTQLSG-HVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKIEFNERN-KEILVNTD- 114 (182)
Q Consensus 38 ~i~I~~~~~l~g-~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~-~~l~I~~~- 114 (182)
.+.|++.+++.+ ++.+|+|.+++.++++++++++++++|.|+.. ..|...+++.|++||++|+ ..+ +.++|.+.
T Consensus 207 ~i~I~~~~~l~~~~i~i~~d~s~~~~l~~~a~~~~~~v~i~~~~~-~~~~~~~~~~L~~~G~~i~--~~~~~~i~i~~~~ 283 (409)
T cd01556 207 TITVKGGQKYKGPEYTVEGDASSAAFFLAAAAITGSEIVIKNVGL-NSGDTGIIDVLKEMGADIE--IGNEDTVVVESGG 283 (409)
T ss_pred EEEECCCCccccCeeEeCCcHHHHHHHHHHHHhcCCeEEEcCCCC-CChHHHHHHHHHHCCCeEE--EcCCCeEEEccCC
Confidence 466766545665 79999999888878888888889999999876 5567889999999999999 665 78889875
Q ss_pred CCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCC---CCChHHHHHHHHHCCCEEEEcCcc
Q 030153 115 GVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIG---ERPVDLYVRGLRALGAAVEISYVF 181 (182)
Q Consensus 115 ~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~---~Rpi~~l~~~L~~lGa~v~~~~~~ 181 (182)
.+++..++.+. ..+...++ ++++.+.++.+.+.|..+++ ++++..+++.|++||+++++.++.
T Consensus 284 ~~~~~~v~~~~---~~d~~~~l-a~~a~~a~g~~~i~~~~~~~~~~s~r~~~~~~~L~~lG~~i~~~~~~ 349 (409)
T cd01556 284 KLKGIDIDGND---IPDEAPTL-AVLAAFAEGPTRIRNAAELRVKESDRIAAMATELRKLGADVEETEDG 349 (409)
T ss_pred CcCceEecccc---CchHHHHH-HHHHHhCCCCEEEEChhhhccccchHHHHHHHHHHHcCCEEEEECCE
Confidence 23333333221 11223333 33444556678888877763 477999999999999999876653
No 23
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase
Probab=99.31 E-value=1.8e-11 Score=109.55 Aligned_cols=135 Identities=20% Similarity=0.282 Sum_probs=95.2
Q ss_pred eEEcCCCcc--ceEEEccCCHHHHHHHHHHhcccCCcEEEeeCCCC-C-hHHHHHHHHHHHcCCeEEEeeeCCEEEEEcC
Q 030153 39 LTITGPTQL--SGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTG-L-SDTKAMLSILRSLGAKIEFNERNKEILVNTD 114 (182)
Q Consensus 39 i~I~~~~~l--~g~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~-s-~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~ 114 (182)
+.|++++.+ .+++.|++|.|++.++++++++++|+++|+|+... . .| ..+++.|++||++|+ ..++.++|.+.
T Consensus 232 i~i~~~~~l~~~~~~~i~~D~ssa~~~la~a~~~~g~v~i~~~~~~~~~~d-~~~l~~L~~mGa~v~--~~~~~i~i~~~ 308 (443)
T PLN02338 232 FFIKGGQKYKSPGNAYVEGDASSASYFLAGAAITGGTVTVEGCGTTSLQGD-VKFAEVLEKMGAKVE--WTENSVTVTGP 308 (443)
T ss_pred EEEcCCccccCCCeEEeCCCHHHHHHHHHHHHhcCCeEEECCCCCCCCcch-hHHHHHHHHcCCeEE--EcCCeEEEcCC
Confidence 566654445 35899999999998888888899999999996541 1 34 347999999999999 77778888764
Q ss_pred C--------CCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCC---CCChHHHHHHHHHCCCEEEEcCc
Q 030153 115 G--------VGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIG---ERPVDLYVRGLRALGAAVEISYV 180 (182)
Q Consensus 115 ~--------~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~---~Rpi~~l~~~L~~lGa~v~~~~~ 180 (182)
. +.+..++ +....+..+++ ++++.+.++++.+.+..+++ ++++..+.+.|++||+++++.+|
T Consensus 309 ~~~~~~~~~l~~~~~d---~~~~~d~~~~l-a~aa~~a~g~s~I~~~~~lr~kesdR~~~~~~~L~~lGa~i~~~~d 381 (443)
T PLN02338 309 PRDAFGGKHLKAIDVN---MNKMPDVAMTL-AVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPD 381 (443)
T ss_pred cccccccCCccceEEC---cccChhHHHHH-HHHHHhCCCcEEEeCchhhcccchHHHHHHHHHHHHcCCEEEEeCC
Confidence 2 2222222 11111223333 33444566778888877775 47899999999999999987665
No 24
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.29 E-value=2.3e-11 Score=114.35 Aligned_cols=136 Identities=16% Similarity=0.238 Sum_probs=98.6
Q ss_pred eEEcCCCcc--ceEEEccCCHHHHHHHHHHhcccCC-cEEEeeCCCCC-hHHHHHHHHHHHcCCeEEEeeeCCEEEEEcC
Q 030153 39 LTITGPTQL--SGHVPISGSKNSSLCLLAATLLCSN-SCLLHNVPTGL-SDTKAMLSILRSLGAKIEFNERNKEILVNTD 114 (182)
Q Consensus 39 i~I~~~~~l--~g~v~vpgsKs~a~~~laAA~La~g-~~~I~n~~~~s-~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~ 114 (182)
+.|.+++++ .+++.||+|.|.+.+++++|++++| +++|+|+.... .....+++.|++||++|+ ..++.++|.+.
T Consensus 226 i~v~~~~~l~~~~~~~V~~D~s~a~~l~aaaa~~~G~~v~i~~v~~~~~q~d~~il~~L~kmGa~i~--~~~~~i~i~~~ 303 (661)
T PRK11860 226 FTIPAGSRYRSPGEIHVEGDASSASYFIAAGAIAGGAPVRIEGVGRDSIQGDIRFAEAARAMGAQVT--SGPNWLEVRRG 303 (661)
T ss_pred EEEcCCcccCCCceeEcCCCHHHHHHHHHHHHhCCCCeEEECCCCCCCCccHHHHHHHHHHcCCEEE--EeCCEEEEEec
Confidence 555544445 3488999999999989999999998 99999997611 122468999999999999 88888999864
Q ss_pred --CCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCC---CCChHHHHHHHHHCCCEEEEcCc
Q 030153 115 --GVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIG---ERPVDLYVRGLRALGAAVEISYV 180 (182)
Q Consensus 115 --~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~---~Rpi~~l~~~L~~lGa~v~~~~~ 180 (182)
.+++..++.. +.......+ +++|++.++.+++.|..+++ ++|+..+.+.|++||+++++.+|
T Consensus 304 ~~~l~g~~id~~---~~pdi~p~L-avla~~a~G~s~I~~v~~lr~KEsdRi~~~~~~L~~LGa~i~~~~d 370 (661)
T PRK11860 304 AWPLKAIDLDCN---HIPDAAMTL-AVMALYADGTTTLRNIASWRVKETDRIAAMATELRKLGATVEEGAD 370 (661)
T ss_pred CCCCcceEEcCc---CChHHHHHH-HHHHHhCCCcEEEeChhHhhhchhhHHHHHHHHHHHCCCEEEEeCC
Confidence 2333333321 111122233 44555677788899988887 57899999999999999987654
No 25
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=99.29 E-value=6.7e-11 Score=104.98 Aligned_cols=134 Identities=19% Similarity=0.179 Sum_probs=90.1
Q ss_pred eEEcCCCccce-EEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcC-CC
Q 030153 39 LTITGPTQLSG-HVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKIEFNERNKEILVNTD-GV 116 (182)
Q Consensus 39 i~I~~~~~l~g-~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~-~~ 116 (182)
+.|++.+.+.+ +++++||.+++.++++|+++++++++|.|+.. .+++.++++|++||++|+ .+++.++|.+. .+
T Consensus 215 i~I~g~~~~~~~~~~v~~D~s~as~ll~aa~l~~g~v~i~~~~~--~~~~~~~~~L~~~G~~v~--~~~~~i~v~~~~~l 290 (417)
T PRK09369 215 ITIEGVERLHGAEHTVIPDRIEAGTFLVAAAITGGDVTIRGARP--EHLEAVLAKLREAGAEIE--EGEDGIRVDMPGRL 290 (417)
T ss_pred EEEcCCCccCCceEEecCCHHHHHHHHHHHHHcCCceEEecCCh--hHHHHHHHHHHHcCCEEE--EcCCEEEEeeCCCc
Confidence 55665554554 79999999998888888888889999998764 777889999999999999 66778888864 34
Q ss_pred CCCCCChhhhh-hhhhHHHHHHHHhhhhCCeEEEecC-CCCCCCCChHHHHHHHHHCCCEEEEcCcc
Q 030153 117 GRVEPCLEEMR-KIRGGFFVIGPLLARFGEAVVGLPG-GCDIGERPVDLYVRGLRALGAAVEISYVF 181 (182)
Q Consensus 117 ~~~~~~~~~~~-~sgts~~~l~~lla~~~~~~~~~~G-~~~l~~Rpi~~l~~~L~~lGa~v~~~~~~ 181 (182)
++..++...+. -.++...++ .++|++.++..++.+ ..+ .+. .+++.|++||+++++.++.
T Consensus 291 ~~~~i~~~~~p~v~~D~~~~l-~~~aa~a~g~~~i~~~~~~---~r~-~~~~~L~~mG~~i~~~~~~ 352 (417)
T PRK09369 291 KAVDIKTAPYPGFPTDMQAQF-MALLTQAEGTSVITETIFE---NRF-MHVPELIRMGADIEVDGHT 352 (417)
T ss_pred cceEEecCCCCCCHHHHHHHH-HHHHHhCCCeEEEEecccc---cHH-HHHHHHHHCCCeEEEECCE
Confidence 44333311111 111222233 333345445556654 332 233 3799999999999876553
No 26
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=99.29 E-value=7.7e-11 Score=104.14 Aligned_cols=135 Identities=20% Similarity=0.182 Sum_probs=93.0
Q ss_pred ceEEcCCCccce-EEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcC--
Q 030153 38 TLTITGPTQLSG-HVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKIEFNERNKEILVNTD-- 114 (182)
Q Consensus 38 ~i~I~~~~~l~g-~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~-- 114 (182)
.+.|.+.+.+++ ++++++|.+++..+++++++++++++|.|+.. ++++.++++|++||++|+ ..++.+.|.+.
T Consensus 213 ~l~I~g~~~~~~~~~~v~~D~~~a~~~l~a~~l~~g~~~i~~~~~--~~~~~~~~~L~~~G~~v~--~~~~~i~v~~~~~ 288 (416)
T TIGR01072 213 TITIEGVEKLHGTEHSVIPDRIEAGTFLVAAAITGGEITIKNVRP--DHLRAVLAKLREIGAEVE--VDENGIRVDMRQK 288 (416)
T ss_pred EEEEeCCCcccCcEEEEcCCHHHHHHHHHHHHHcCCeEEEEecCc--hHHHHHHHHHHHCCCEEE--EcCCEEEEEecCC
Confidence 356666554555 78999999887767777888889999999875 677889999999999999 77788888864
Q ss_pred CCCCCCCChhhhh-hhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCChHHHHHHHHHCCCEEEEcCc
Q 030153 115 GVGRVEPCLEEMR-KIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEISYV 180 (182)
Q Consensus 115 ~~~~~~~~~~~~~-~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~~~~ 180 (182)
.+++..++...+. --++...++ .++|++.++..++.+. ..++++. +++.|++||++++..++
T Consensus 289 ~l~~~~i~~~~~p~v~~D~~~~l-~~la~~a~g~~~i~~~--~~~~r~~-~~~~L~~~Ga~i~~~~~ 351 (416)
T TIGR01072 289 RLKAVDIETLPYPGFPTDLQAQF-MALLSQAEGTSVITET--VFENRFM-HVDELIRMGANIKLEGN 351 (416)
T ss_pred CcceeEecCCCCCCChHHHHHHH-HHHHHcCCCeEEEEee--ecccHHH-HHHHHHHCCCeEEEECC
Confidence 4444333311111 111223333 3444565666777763 2344565 79999999999987655
No 27
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.28 E-value=4.6e-11 Score=106.16 Aligned_cols=137 Identities=24% Similarity=0.348 Sum_probs=92.6
Q ss_pred eEEcCCCccce-EEEccCCHHHHHHHHHHhcccCC-cEEEeeCCCCC-hHHHHHHHHHHHcCCeEEEeeeCC--------
Q 030153 39 LTITGPTQLSG-HVPISGSKNSSLCLLAATLLCSN-SCLLHNVPTGL-SDTKAMLSILRSLGAKIEFNERNK-------- 107 (182)
Q Consensus 39 i~I~~~~~l~g-~v~vpgsKs~a~~~laAA~La~g-~~~I~n~~~~s-~Dv~~~l~~L~~lGa~I~~~~~~~-------- 107 (182)
+.|++.+.+++ ++.+|+|.|++.++++|++++++ +++|+|+...+ .....+++.|++||++|+ ..++
T Consensus 223 i~I~g~~~l~~~~~~i~~D~ssa~~ll~aa~~~~g~~i~i~~~~~~~~~~~~~~l~~L~~~G~~v~--~~~~~~~~~~~~ 300 (435)
T PRK02427 223 IVIKGGQRLRGQDITVPGDPSSAAFFLAAAAITGGSEVTITNVGLNSTQGGKAIIDVLEKMGADIE--IENEREGGEPVG 300 (435)
T ss_pred EEECCCcccccceEEeCCCHHHHHHHHHHHHhCCCCeEEEeCCCCCCCcchHHHHHHHHHcCCceE--eccccccCCccC
Confidence 45555455665 79999999888878888888888 89999974312 111468999999999998 5332
Q ss_pred EEEEEcCCCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCC---CCChHHHHHHHHHCCCEEEEcCcc
Q 030153 108 EILVNTDGVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIG---ERPVDLYVRGLRALGAAVEISYVF 181 (182)
Q Consensus 108 ~l~I~~~~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~---~Rpi~~l~~~L~~lGa~v~~~~~~ 181 (182)
.++|.+..+++..++ .+...+..+++ .+++++.++.+++.|..+++ ++++..+++.|++||+++++.+|.
T Consensus 301 ~i~i~~~~l~~~~~~---~~d~~d~~~~l-~~~a~~a~g~~~i~~~~~~r~~e~dr~~~~~~~L~~~Ga~v~~~~~~ 373 (435)
T PRK02427 301 DIRVRSSELKGIDID---IPDIIDEAPTL-AVLAAFAEGTTVIRNAEELRVKETDRIAAMATELRKLGAEVEETEDG 373 (435)
T ss_pred cEEEecCCcccEEee---cCCCchHHHHH-HHHHHhCCCCEEEEChhhccccccHHHHHHHHHHHHCCCEEEEeCCe
Confidence 477875444332222 12222223333 22333555678888877664 577889999999999999876653
No 28
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=99.27 E-value=8.8e-11 Score=103.28 Aligned_cols=136 Identities=22% Similarity=0.193 Sum_probs=90.3
Q ss_pred ceEEcCCCccce-EEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcC--
Q 030153 38 TLTITGPTQLSG-HVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKIEFNERNKEILVNTD-- 114 (182)
Q Consensus 38 ~i~I~~~~~l~g-~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~-- 114 (182)
.+.|++.+.++| ++.++||.+++.++++|+++++++++|+|+.. +.++.+++.|++||++|+ .+++.++|.+.
T Consensus 203 ~i~I~g~~~l~~~~~~~~~D~~~a~~~l~aa~~~~g~~~i~~~~~--~~~~~~~~~L~~~G~~i~--~~~~~i~i~~~~~ 278 (400)
T cd01555 203 TIRIEGVERLHGAEHTVIPDRIEAGTFLVAAAITGGDITVENVIP--EHLEAVLAKLREMGAKIE--IGEDGIRVDGDGG 278 (400)
T ss_pred eEEEeCCCCCCCcEEEecCCHHHHHHHHHHHHHhCCcEEEeCCCh--hHHHHHHHHHHHCCCEEE--EcCCEEEEEcCCC
Confidence 355665555665 68999999877778888888999999999875 677789999999999999 77788999865
Q ss_pred CCCCCCCChhhhhh-hhhHHHHHHHHhhhhCCeEEEecCCCCCCCCChHHHHHHHHHCCCEEEEcCcc
Q 030153 115 GVGRVEPCLEEMRK-IRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEISYVF 181 (182)
Q Consensus 115 ~~~~~~~~~~~~~~-sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~~~~~ 181 (182)
.+++.+++...+.. .++-..++.. +|++.++..++.+. +...+.. +.+.|++||+++++.+|.
T Consensus 279 ~l~~~~i~~~~~p~~~~D~~~~l~~-~a~~~~g~~~~~~~--~~~~r~~-~~~~L~~lGa~i~~~~~~ 342 (400)
T cd01555 279 RLKAVDIETAPYPGFPTDLQAQFMA-LLTQAEGTSVITET--IFENRFM-HVDELNRMGADIKVEGNT 342 (400)
T ss_pred CceeeeeecCcCCCCHHHHHHHHHH-HHHhCCCeEEEEee--ehhhhhH-HHHHHHHcCCeEEEECCE
Confidence 34333333211111 1122223323 33354445556552 2223333 899999999999876653
No 29
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.23 E-value=1.4e-10 Score=109.86 Aligned_cols=140 Identities=19% Similarity=0.279 Sum_probs=99.3
Q ss_pred ceEEcCCCccce-EEEccCCHHHHHHHHHHhcccCC-cEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCC--------
Q 030153 38 TLTITGPTQLSG-HVPISGSKNSSLCLLAATLLCSN-SCLLHNVPTGLSDTKAMLSILRSLGAKIEFNERNK-------- 107 (182)
Q Consensus 38 ~i~I~~~~~l~g-~v~vpgsKs~a~~~laAA~La~g-~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~~-------- 107 (182)
.+.|.+.+.+.+ ++.+|+|.+.+.++++++++++| .++|+|+.....+ ..+++.|++||++|+ ..++
T Consensus 515 ~i~I~g~~~~~~~~~~i~~D~~~a~~~~~~a~~~~g~~v~i~~~~~~~~~-~~~~~~L~~mGa~i~--~~~~~~~~g~~~ 591 (735)
T PRK14806 515 TISVEGGGKLTATDIEVPADISSAAFFLVAASIAEGSELTLEHVGINPTR-TGVIDILKLMGADIT--LENEREVGGEPV 591 (735)
T ss_pred EEEECCCccccCCeEEeCCCHHHHHHHHHHHHhCCCCEEEEccCCCCcch-HHHHHHHHHcCCEEE--EcCcccccCCcc
Confidence 366766555655 79999999988878888878755 7999998541223 458899999999999 5443
Q ss_pred -EEEEEcCCCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCC---CCChHHHHHHHHHCCCEEEEcCcc
Q 030153 108 -EILVNTDGVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIG---ERPVDLYVRGLRALGAAVEISYVF 181 (182)
Q Consensus 108 -~l~I~~~~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~---~Rpi~~l~~~L~~lGa~v~~~~~~ 181 (182)
.++|.+..+++.+++.+..+..-+....+ ++++.+.++++++.|..+++ ++|+..+.+.|++||++++..+|.
T Consensus 592 ~~i~v~~~~l~~~~i~~~~~p~~~D~~p~l-a~~a~~a~G~s~i~~~~~lr~~EsdR~~~~~~~L~~lG~~i~~~~~~ 668 (735)
T PRK14806 592 ADIRVRGARLKGIDIPEDQVPLAIDEFPVL-FVAAACAEGRTVLTGAEELRVKESDRIQVMADGLKTLGIDCEPTPDG 668 (735)
T ss_pred eeEEEecCCcccEEechHhCcchhhHHHHH-HHHHHhCCCcEEEEChHHhccchhHHHHHHHHHHHHcCCEEEEeCCe
Confidence 46677655555555543322211333444 44445677889999988776 589999999999999999887654
No 30
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=99.21 E-value=2.7e-10 Score=100.88 Aligned_cols=135 Identities=14% Similarity=0.168 Sum_probs=84.9
Q ss_pred ceEEcCCCccce-EEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcC-C
Q 030153 38 TLTITGPTQLSG-HVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKIEFNERNKEILVNTD-G 115 (182)
Q Consensus 38 ~i~I~~~~~l~g-~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~-~ 115 (182)
.+.|++++.++| ++.+++|.+++..+++++++..+.++|+|+.. ++++.++++|++||++|+ .+++.++|.+. .
T Consensus 212 ~i~I~g~~~~~~~~~~v~~d~~sa~~~l~~aa~~~~~~~i~~~~~--~~~~~~~~~L~~~G~~i~--~~~~~i~v~~~~~ 287 (417)
T PRK12830 212 VIRIEGVDELHGCRHTVIPDRIEAGTYMILAAACGGGVTINNVIP--EHLESFIAKLEEMGVRVE--VNEDSIFVEKQGN 287 (417)
T ss_pred EEEEccCCcccCcEEeeCCCcHHHHHHHHHHHHhCCCEEEeCCCh--hHHHHHHHHHHHCCCEEE--EcCCEEEEEeCCC
Confidence 466776555666 68889998666534443444457788999874 678889999999999999 77778888863 3
Q ss_pred CCCCCCChhhhhh-hhhHHHHHHHHhhhhCCeEEEec-CCCCCCCCChHHHHHHHHHCCCEEEEcCcc
Q 030153 116 VGRVEPCLEEMRK-IRGGFFVIGPLLARFGEAVVGLP-GGCDIGERPVDLYVRGLRALGAAVEISYVF 181 (182)
Q Consensus 116 ~~~~~~~~~~~~~-sgts~~~l~~lla~~~~~~~~~~-G~~~l~~Rpi~~l~~~L~~lGa~v~~~~~~ 181 (182)
+++..++...+.. ..+...++.++ +.+.++..++. |..+.+ ...++.|++||+++++.+|.
T Consensus 288 l~~~~i~~~~~p~~~~D~~~~laa~-a~~a~g~~~i~~~~~~~r----~~~~~~L~~mGa~i~~~~~~ 350 (417)
T PRK12830 288 LKAVDIKTLPYPGFATDLQQPLTPL-LLKANGRSVVTDTIYEKR----FKHVDELKRMGANIKVEGRS 350 (417)
T ss_pred ccceeeccCCCCCChHHHHHHHHHH-HHcCCCcEEEEeccchhh----HHHHHHHHHCCCeEEEECCE
Confidence 4444333221221 11222344333 33444445555 544433 22378999999999986653
No 31
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC). These 2 families differ in that EPT is formed by 3 repeats of an alpha-beta structural domain while RTPC has 3 similar repeats with a 4th slightly different domain inserted between the 2nd and 3rd repeat. They evidently share the same active site location, although the catalytic residues differ.
Probab=98.97 E-value=5.4e-09 Score=85.38 Aligned_cols=125 Identities=16% Similarity=0.117 Sum_probs=82.2
Q ss_pred cCCHHHHHHHHHHhcccCCcEEEeeCCCCChH-------HHHHHHHHHHc-CCeEEEee-eCCEEEEEcCCCCCCCCChh
Q 030153 54 SGSKNSSLCLLAATLLCSNSCLLHNVPTGLSD-------TKAMLSILRSL-GAKIEFNE-RNKEILVNTDGVGRVEPCLE 124 (182)
Q Consensus 54 pgsKs~a~~~laAA~La~g~~~I~n~~~~s~D-------v~~~l~~L~~l-Ga~I~~~~-~~~~l~I~~~~~~~~~~~~~ 124 (182)
.||.|.+.+++++|++++++++|+|+.. ..+ -..++++|++| |++++++. .++.+++.+..+++..++.+
T Consensus 7 ~~d~s~a~~~lala~l~g~~i~I~~i~~-~~~~pgl~q~~~~~l~~L~~~~G~~i~~~~~~~~~i~~~p~~l~g~~i~~~ 85 (211)
T cd01553 7 KGGGQILRSFLVLAAISGGPITVTGIRP-DRAKPGLLRQHLTFLKALEKICGATVEGGELGSDRISFRPGTVRGGDVRFA 85 (211)
T ss_pred CCChHHHHHHHHHHHHcCCCEEEEEecc-CCCCccccHHHHHHHHHHHHHcCCeEEeeecCCceEEEeCCCccceEEEec
Confidence 3788888888999999999999999986 331 24589999999 99999321 15678887644444333222
Q ss_pred h--hhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCC-------CChHHHHHHHHHCCCEEEEcCc
Q 030153 125 E--MRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGE-------RPVDLYVRGLRALGAAVEISYV 180 (182)
Q Consensus 125 ~--~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~-------Rpi~~l~~~L~~lGa~v~~~~~ 180 (182)
. .+.....+..+.+++ .+.++++++.+...++. +++..++..|++||++++..++
T Consensus 86 ~~s~g~~~d~~~~l~~la-~~a~g~s~i~~~g~tr~~~~~~e~~r~~~~~~~L~k~G~~~~~~~~ 149 (211)
T cd01553 86 IGSAGSCTDVLQTILPLL-LFAKGPTRLTVTGGTDNPSAPPADFIRFVLEPELAKIGAHQEETLL 149 (211)
T ss_pred cCCcccHHHHHHHHHHHH-HhCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHcCCcceeeee
Confidence 1 111223333343333 35666666666555443 7778889999999999975443
No 32
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane]
Probab=98.81 E-value=4.2e-08 Score=86.85 Aligned_cols=126 Identities=18% Similarity=0.293 Sum_probs=89.0
Q ss_pred cce-EEEcc-CCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeC-CEEEEEcCC-CCCCCCC
Q 030153 47 LSG-HVPIS-GSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKIEFNERN-KEILVNTDG-VGRVEPC 122 (182)
Q Consensus 47 l~g-~v~vp-gsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~-~~l~I~~~~-~~~~~~~ 122 (182)
+.| .|..| .|--.+..+|.||.|++|+++|+|... ..++..+.++|++|||+|+ ..+ ++++|+|.. +.+....
T Consensus 153 L~G~~I~ld~~SVGATenimmAA~lA~G~TvIeNAA~-EPEIvDLa~~Ln~MGA~I~--GaGT~~I~I~GV~~L~g~~h~ 229 (421)
T COG0766 153 LKGAHIYLDKVSVGATENIMMAAVLAEGTTVIENAAR-EPEIVDLANFLNKMGAKIE--GAGTSTITIEGVEKLHGAEHS 229 (421)
T ss_pred ccceEEEecCCcccHHHHHHHHHHhcCCcEEEeeccc-CchHHHHHHHHHHcCCeeE--EcCCCeEEEeccccccceeeE
Confidence 555 34443 233466678899999999999999998 8888889999999999999 765 699999964 4332211
Q ss_pred hhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCChHHHHHHHHHCCCEEEEcCccC
Q 030153 123 LEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEISYVFF 182 (182)
Q Consensus 123 ~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~~~~~~ 182 (182)
- +.+++-+..+++++.++ .+.+.+. ....+.+++++..|+++|++++..++.+
T Consensus 230 V-ipDRIEAGT~~~aaA~t---gg~v~i~---~v~~~hl~~~~~kL~e~G~~~~~~~~~i 282 (421)
T COG0766 230 V-IPDRIEAGTFLVAAAIT---GGDVTIE---NVRPEHLEAVLAKLREAGVDIEEGEDGI 282 (421)
T ss_pred e-cCchhhHHHHHHHHHHh---CCcEEEe---CCCHHHHHHHHHHHHHhCCeEEEcCCeE
Confidence 0 23445555555533332 2445554 3455778999999999999999887653
No 33
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=97.44 E-value=6.9e-05 Score=68.17 Aligned_cols=127 Identities=17% Similarity=0.207 Sum_probs=89.0
Q ss_pred ceEEEccCCHHHHHHHHHHhcccCCcEEEeeCCCC--ChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCC------
Q 030153 48 SGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTG--LSDTKAMLSILRSLGAKIEFNERNKEILVNTDGVGRV------ 119 (182)
Q Consensus 48 ~g~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~--s~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~~~~~~------ 119 (182)
.++..|.+|.|++.++++.|+.+..++++.|+... .+|.+ +.++|+.||++++ +-.+.+++.|.....+
T Consensus 338 p~~~~ve~dAssa~yfla~aa~tg~~~tV~~~g~~Slqgda~-Fa~vl~pmgc~v~--qt~~svtv~gp~~ga~~~~~lr 414 (595)
T KOG0692|consen 338 PGNAYVEGDASSASYFLAGAAITGETVTVEGCGTTSLQGDAK-FAEVLEPMGCKVS--QTENSVTVTGPPRGAFGMRHLR 414 (595)
T ss_pred CCCceeecccccccccceeeeEecceeeeccccceecccccc-hHhhhccccceee--eecccccccCCCCCcccceehh
Confidence 35688888889999999999999999999999652 25654 5599999999999 8888888887543221
Q ss_pred CCChhhhhhhhhHHHHHHHHhhhhC-----CeEEEecCCCCCC---CCChHHHHHHHHHCCCEEEEcCc
Q 030153 120 EPCLEEMRKIRGGFFVIGPLLARFG-----EAVVGLPGGCDIG---ERPVDLYVRGLRALGAAVEISYV 180 (182)
Q Consensus 120 ~~~~~~~~~sgts~~~l~~lla~~~-----~~~~~~~G~~~l~---~Rpi~~l~~~L~~lGa~v~~~~~ 180 (182)
.+| +-+-+.-....+.+.|++. ....++.+..+-+ ..+|-.+..+|+++|+.+++..|
T Consensus 415 ~iD---~m~~m~d~~~t~svvA~~~~~~s~gdptti~~~as~rvket~r~ia~~~el~klg~~~~E~~d 480 (595)
T KOG0692|consen 415 AID---VMNKMPDVAMTLSVVALFAGLRSSGDPTTIRDVASWRVKETERMIAICTELRKLGATVEEGSD 480 (595)
T ss_pred hhc---ccccccchhHhHhHHHHhhcccCCCCCcccccccchhHHHHHHHHHHHHHHHHhcccccccCc
Confidence 122 0111111122234455433 3457777766665 68899999999999999988765
No 34
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC). These 2 families differ in that EPT is formed by 3 repeats of an alpha-beta structural domain while RTPC has 3 similar repeats with a 4th slightly different domain inserted between the 2nd and 3rd repeat. They evidently share the same active site location, although the catalytic residues differ.
Probab=95.50 E-value=0.34 Score=39.39 Aligned_cols=44 Identities=18% Similarity=0.083 Sum_probs=31.4
Q ss_pred HHHHHhcccCCcEEEeeCCC-------CChHH-HHHHHHHHHcCCeEEEeeeCC
Q 030153 62 CLLAATLLCSNSCLLHNVPT-------GLSDT-KAMLSILRSLGAKIEFNERNK 107 (182)
Q Consensus 62 ~~laAA~La~g~~~I~n~~~-------~s~Dv-~~~l~~L~~lGa~I~~~~~~~ 107 (182)
.+++++++++++++|+|... ..+|. .+++..|++||++++ ...+
T Consensus 98 ~l~~la~~a~g~s~i~~~g~tr~~~~~~e~~r~~~~~~~L~k~G~~~~--~~~~ 149 (211)
T cd01553 98 TILPLLLFAKGPTRLTVTGGTDNPSAPPADFIRFVLEPELAKIGAHQE--ETLL 149 (211)
T ss_pred HHHHHHHhCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHcCCcce--eeee
Confidence 35556667999999998765 12243 457899999999987 5444
No 35
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=94.11 E-value=0.95 Score=39.66 Aligned_cols=113 Identities=18% Similarity=0.246 Sum_probs=67.4
Q ss_pred HHHHhcccCCcEEEeeCCCCCh------HH-HHHHHHHHHc-CCeEE-EeeeCCEEEEEcCCCCCCCCChhhhhhhhhHH
Q 030153 63 LLAATLLCSNSCLLHNVPTGLS------DT-KAMLSILRSL-GAKIE-FNERNKEILVNTDGVGRVEPCLEEMRKIRGGF 133 (182)
Q Consensus 63 ~laAA~La~g~~~I~n~~~~s~------Dv-~~~l~~L~~l-Ga~I~-~~~~~~~l~I~~~~~~~~~~~~~~~~~sgts~ 133 (182)
.++.|+|++.+++|+|+-. .. += ...++++.++ +++++ .+..+..++..|....+..... .++.+|+..
T Consensus 18 alaLS~ltgkpv~I~nIR~-~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~Pg~i~gG~~~~-d~gtagSi~ 95 (326)
T TIGR03399 18 ALSLSALTGKPVRIYNIRA-NRPKPGLAPQHLTAVKAAAEICNAEVEGAELGSTELEFIPGKIRGGDYRF-DIGTAGSVT 95 (326)
T ss_pred HHHHHHhhCCCEEEEEecc-CCCCCCchHHHHHHHHHHHHHcCCeEeeeecCceEEEEECCCccCCeEEE-eCCCChhhH
Confidence 4666779999999999854 21 21 2477888876 57665 1123356777776543322211 255565555
Q ss_pred HHHHHHh--hhhCC--eEEEecCCCCCC-CCChHHH----HHHHHHCCCEEEE
Q 030153 134 FVIGPLL--ARFGE--AVVGLPGGCDIG-ERPVDLY----VRGLRALGAAVEI 177 (182)
Q Consensus 134 ~~l~~ll--a~~~~--~~~~~~G~~~l~-~Rpi~~l----~~~L~~lGa~v~~ 177 (182)
+++=+++ +.|++ .++++.|+-+-. .-|++-+ +-.|++||++++.
T Consensus 96 l~lq~lLp~l~f~~~p~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l 148 (326)
T TIGR03399 96 LVLQTLLPALLFANGPSRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAEL 148 (326)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 5554333 22444 578889876665 3444433 5567899998864
No 36
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=93.33 E-value=1.5 Score=38.66 Aligned_cols=114 Identities=19% Similarity=0.299 Sum_probs=67.0
Q ss_pred HHHHhcccCCcEEEeeCCCC-----ChHH-HHHHHHHHHc-CCeEEEeeeC-CEEEEEcCCCCCCCCChhhhhhhhhHHH
Q 030153 63 LLAATLLCSNSCLLHNVPTG-----LSDT-KAMLSILRSL-GAKIEFNERN-KEILVNTDGVGRVEPCLEEMRKIRGGFF 134 (182)
Q Consensus 63 ~laAA~La~g~~~I~n~~~~-----s~Dv-~~~l~~L~~l-Ga~I~~~~~~-~~l~I~~~~~~~~~~~~~~~~~sgts~~ 134 (182)
.++.|+|++.+++|+|+-.+ ..+= ...++++.++ +++++-+..+ ..++..|....+..... .|+.+|+..+
T Consensus 20 alaLS~ltgkpv~I~nIR~~r~~PGL~~qhl~~l~l~~~i~~~~v~g~~~gst~l~f~Pg~i~~g~~~~-d~~tagsi~l 98 (343)
T PRK04204 20 ALALSAITGKPFRITNIRANRPNPGLLRQHLTAVKAAAEICNAEVEGAELGSQELVFIPGPIRGGDYRF-DIGTAGSITL 98 (343)
T ss_pred HHHHHHhhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEEeeecCceEEEEECCCccCCeEEE-ecCCCcchhh
Confidence 45667799999999998530 1121 2467888776 6777622223 46777776543322211 2555555545
Q ss_pred HHHHHhh--hhCC--eEEEecCCCCCC-CCChHHH----HHHHHHCCCEEEE
Q 030153 135 VIGPLLA--RFGE--AVVGLPGGCDIG-ERPVDLY----VRGLRALGAAVEI 177 (182)
Q Consensus 135 ~l~~lla--~~~~--~~~~~~G~~~l~-~Rpi~~l----~~~L~~lGa~v~~ 177 (182)
++=+++- .|++ .++++.|+-+-. +-|++-+ +-.|++||++++.
T Consensus 99 ~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l 150 (343)
T PRK04204 99 VLQTVLPALLFADGPSRVTITGGTDVPWAPPIDYIRRVTLPLLRRMGIEAEI 150 (343)
T ss_pred HHHHHHHHHhcCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 4443222 1433 578889876665 4455444 5568999998874
No 37
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=93.01 E-value=0.6 Score=41.10 Aligned_cols=114 Identities=21% Similarity=0.308 Sum_probs=66.3
Q ss_pred HHHHhcccCCcEEEeeCCCC-----ChHH-HHHHHHHHHc-CCeEEEeeeC-CEEEEEcCCCCCCCCChhhhhhhhhHHH
Q 030153 63 LLAATLLCSNSCLLHNVPTG-----LSDT-KAMLSILRSL-GAKIEFNERN-KEILVNTDGVGRVEPCLEEMRKIRGGFF 134 (182)
Q Consensus 63 ~laAA~La~g~~~I~n~~~~-----s~Dv-~~~l~~L~~l-Ga~I~~~~~~-~~l~I~~~~~~~~~~~~~~~~~sgts~~ 134 (182)
.+++|+|++.+++|.|+-.+ ..+= ...+++++.+ +++++=++.+ ..+...+...++....- .++.+|+-.+
T Consensus 20 al~LS~ltG~pvrI~nIRa~R~~PGL~~QHltaVra~~~i~~a~v~G~e~GS~~l~F~Pg~i~gG~~~~-digTAGsi~L 98 (341)
T COG0430 20 ALALSALTGKPVRIENIRAGRANPGLKRQHLTAVRAAAEICNAEVEGAELGSTELVFRPGKIRGGDYRV-DIGTAGSITL 98 (341)
T ss_pred HHHHHHhcCCceEEEEEccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeeccceEEEEeccceeCceEEE-EecCCCceee
Confidence 35566699999999999531 1222 3467777775 7887711222 46666665544332211 1333333333
Q ss_pred HHHH----HhhhhCCeEEEecCCCCCC-CCChHH----HHHHHHHCCCEEEE
Q 030153 135 VIGP----LLARFGEAVVGLPGGCDIG-ERPVDL----YVRGLRALGAAVEI 177 (182)
Q Consensus 135 ~l~~----lla~~~~~~~~~~G~~~l~-~Rpi~~----l~~~L~~lGa~v~~ 177 (182)
++=+ ++.+-++.+++++|+-.-. .-|+|- .+..|+++|.+++.
T Consensus 99 vlQtlLp~~~fa~~~~~i~v~GGTdv~~aP~vDyir~v~lp~L~k~G~~~~l 150 (341)
T COG0430 99 VLQTLLPLLLFADGPSRITVTGGTDVPWAPPVDYIRRVTLPVLRKMGIECEL 150 (341)
T ss_pred eHHHHHHHhhcCCCCeEEEEECccCCCCCCCcchhhhhHHHHHHhhccceEE
Confidence 3322 2222355778899977765 455544 37789999999874
No 38
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond. The enzymes are conserved in eucaryotes, bacteria and archaea. The exact biological role of this enzyme is unknown, but it has been proposed that it is likely to function in cellular RNA metabolism and processing. RNA phosphate cyclase has been characterized in human (with at least three isozymes), and E. coli, and it seems to be taxonomically widespread. The crystal structure of RNA phospate cyclase shows that it consists of two domains. The larger domain contains three repeats of a fold originally identified in the bacterial translation initiation factor IF3.
Probab=92.66 E-value=1.7 Score=38.32 Aligned_cols=113 Identities=15% Similarity=0.223 Sum_probs=67.3
Q ss_pred HHHHhcccCCcEEEeeCCCC-----ChHH-HHHHHHHHHc-CCeEE-EeeeCCEEEEEcCCCCCCCCChhhhhhhhhHHH
Q 030153 63 LLAATLLCSNSCLLHNVPTG-----LSDT-KAMLSILRSL-GAKIE-FNERNKEILVNTDGVGRVEPCLEEMRKIRGGFF 134 (182)
Q Consensus 63 ~laAA~La~g~~~I~n~~~~-----s~Dv-~~~l~~L~~l-Ga~I~-~~~~~~~l~I~~~~~~~~~~~~~~~~~sgts~~ 134 (182)
.++.|++++.+++|+|+-.+ ..+= ...++++.++ +++++ .+..+.+++..|....+..... .|+..|+..+
T Consensus 16 alaLS~ltgkpvrI~nIR~~r~~PGL~~qhl~~l~ll~~i~~g~~~g~~~gst~l~F~Pg~i~gG~~~~-d~gtagSi~l 94 (338)
T cd00295 16 ALSLAMISGQPFRIEGIRADEADPGLKDQHLSALKAAEEICGASVEEAELGGQRFIFRPGNIIGGDVRF-ACGSAGGCGL 94 (338)
T ss_pred HHHHHHhhCCCEEEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeecCceEEEEECCcccCCeEEE-eCCCCcchHH
Confidence 45667799999999998530 1122 2478888886 66665 2123457777776543322211 2565555555
Q ss_pred HHHHHh--hhhCC--eEEEecCCCCCC-CCChHHH----HHHHHHCCCEEE
Q 030153 135 VIGPLL--ARFGE--AVVGLPGGCDIG-ERPVDLY----VRGLRALGAAVE 176 (182)
Q Consensus 135 ~l~~ll--a~~~~--~~~~~~G~~~l~-~Rpi~~l----~~~L~~lGa~v~ 176 (182)
++=+++ +.|++ .++.+.|+-+-. .-|++-+ +-.|++||+.++
T Consensus 95 ~lq~lLp~~~fa~~~~~l~l~GgT~~~~sPsvD~~~~v~lp~l~~~G~~~~ 145 (338)
T cd00295 95 FLEPILIACLFADGPSRLELSGGTDNNEAIGADFIRRSLEPLLAKIFIHGD 145 (338)
T ss_pred HHHHHHHHHHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHhCCccc
Confidence 544332 22444 578888876664 4455443 556799999765
No 39
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Members of this strictly eukaryotic protein family are not RNA 3'-phosphate cyclase (6.5.1.4), but rather a homolog with a distinct function, found in the nucleolus and required for ribosomal RNA processing. Homo sapiens has both a member of this RCL (RNA terminal phosphate cyclase like) family and EC 6.5.1.4, while Saccharomyces has a member of this family only.
Probab=91.12 E-value=3.7 Score=36.42 Aligned_cols=114 Identities=18% Similarity=0.258 Sum_probs=67.9
Q ss_pred HHHHhcccCCcEEEeeCCCC-----ChHH-HHHHHHHHHc-CCeEE-EeeeCCEEEEEcCCCCCCCCChhhhhhhhhHHH
Q 030153 63 LLAATLLCSNSCLLHNVPTG-----LSDT-KAMLSILRSL-GAKIE-FNERNKEILVNTDGVGRVEPCLEEMRKIRGGFF 134 (182)
Q Consensus 63 ~laAA~La~g~~~I~n~~~~-----s~Dv-~~~l~~L~~l-Ga~I~-~~~~~~~l~I~~~~~~~~~~~~~~~~~sgts~~ 134 (182)
.++.|++++.+++|+|+-.+ ..+= ...++++.++ +++++ .+..+.+++..|....+..... .|+..|+..+
T Consensus 12 alaLS~itgkpv~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~Pg~i~gG~~~~-d~gtagSitl 90 (360)
T TIGR03400 12 RLVLSTLSGKPVRITKIRSDDENPGLRDYEVSFLRLLEKVTNGSKIEISYTGTTVIYKPGLITGGSVTH-ECPTTRGIGY 90 (360)
T ss_pred HHHHHHhcCCCEEEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeecCceEEEEECCcccCCeEEE-eCCCCcchHH
Confidence 45667799999999998541 1121 3478888887 67665 2123356777775543322221 2566565555
Q ss_pred HHHHHh--hhhCC--eEEEecCCCCCC-CCChHH----HHHHHHHCCC---EEEE
Q 030153 135 VIGPLL--ARFGE--AVVGLPGGCDIG-ERPVDL----YVRGLRALGA---AVEI 177 (182)
Q Consensus 135 ~l~~ll--a~~~~--~~~~~~G~~~l~-~Rpi~~----l~~~L~~lGa---~v~~ 177 (182)
++=+++ +.|++ .++.+.|+-+.. .-|++- ++-.|++||+ +++.
T Consensus 91 ~lq~lLp~~lf~~~~~~l~l~GgT~v~~sPsvDy~~~v~lp~l~~~G~~~~~~~l 145 (360)
T TIGR03400 91 YLEPLLLLAPFSKKPLSITLKGITNSTGDPSVDTIRTATLPLLKKFGIPDEGLEL 145 (360)
T ss_pred HHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCceEE
Confidence 554333 22444 578899976655 455544 3556899999 6753
No 40
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=90.71 E-value=3.7 Score=36.21 Aligned_cols=111 Identities=18% Similarity=0.271 Sum_probs=66.2
Q ss_pred HHHHhcccCCcEEEeeCCCC-----ChHH-HHHHHHHHHc-CCeEE-EeeeCCEEEEEcCCCCCCCCChhhhhhhhhHHH
Q 030153 63 LLAATLLCSNSCLLHNVPTG-----LSDT-KAMLSILRSL-GAKIE-FNERNKEILVNTDGVGRVEPCLEEMRKIRGGFF 134 (182)
Q Consensus 63 ~laAA~La~g~~~I~n~~~~-----s~Dv-~~~l~~L~~l-Ga~I~-~~~~~~~l~I~~~~~~~~~~~~~~~~~sgts~~ 134 (182)
.++.|++++.+++|+|+-.+ ..+= ...++++.++ +++++ .+..+.+++..|....+..... .|+.+|+..+
T Consensus 16 alaLS~ltgkpv~I~nIR~~r~~PGL~~qhl~~l~ll~~it~g~~~g~~~gst~l~F~PG~i~gG~~~~-d~gtagSI~l 94 (341)
T cd00875 16 RLVLATLSGKPIIIKKIRSDDTNPGLRDHEVSFLRLLEKVTNGSVIEISYTGTTLIYKPGLITGGVLNH-DCPVSRGIGY 94 (341)
T ss_pred HHHHHHhcCCCEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcEEeeecCceEEEEECCCccCCcEEE-eCCCCcchHH
Confidence 45667799999999998530 1121 2478888887 56655 2223456777776443322211 2555555555
Q ss_pred HHHHHh--hhhCC--eEEEecCCCCCC-CCChHHH----HHHHHHCCCE
Q 030153 135 VIGPLL--ARFGE--AVVGLPGGCDIG-ERPVDLY----VRGLRALGAA 174 (182)
Q Consensus 135 ~l~~ll--a~~~~--~~~~~~G~~~l~-~Rpi~~l----~~~L~~lGa~ 174 (182)
++=+++ +.|++ .++++.|+-+.. .-|++-+ +-.|++||+.
T Consensus 95 ~Lq~lLp~~~f~~~p~~l~l~GgT~~~~spsvD~~~~v~lP~l~~fG~~ 143 (341)
T cd00875 95 FLEPLLLLAPFGKKPLSITLKGITNSTGDPSVDSIRTATLPLLKKFGIP 143 (341)
T ss_pred HHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 554444 22444 578888876654 5566554 4458999983
No 41
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=89.16 E-value=5.2 Score=35.06 Aligned_cols=114 Identities=19% Similarity=0.297 Sum_probs=67.5
Q ss_pred HHHHhcccCCcEEEeeCCCC-----ChHH-HHHHHHHHHc-CCeEEEeee-CCEEEEEcCCCCCCCCChhhhhhhhhHHH
Q 030153 63 LLAATLLCSNSCLLHNVPTG-----LSDT-KAMLSILRSL-GAKIEFNER-NKEILVNTDGVGRVEPCLEEMRKIRGGFF 134 (182)
Q Consensus 63 ~laAA~La~g~~~I~n~~~~-----s~Dv-~~~l~~L~~l-Ga~I~~~~~-~~~l~I~~~~~~~~~~~~~~~~~sgts~~ 134 (182)
.++.|+|++.+++|+|+-.+ ..+= ...++++.++ +++++-+.. +..++..|....+..... .++.+|+..+
T Consensus 16 alaLS~ltg~pv~I~nIR~~r~~PGL~~qh~~~l~ll~~i~~g~~~g~~~gst~l~f~Pg~i~gG~~~~-d~~tagsi~l 94 (326)
T cd00874 16 ALALSAVTGKPVRIVNIRANRSNPGLSRQHLTAVRAAARICNAEVEGAELGSTELEFEPGKIKGGDYEF-DIGTAGSITL 94 (326)
T ss_pred HHHHHHHhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEeeeecCceEEEEECCCccCCcEEE-eCCCCcchHH
Confidence 45667799999999998530 1121 2478888886 566652122 356777776543322221 2555555555
Q ss_pred HHHHHhh--hhCC--eEEEecCCCCCC-CCChHHH----HHHHHHCCCEEEE
Q 030153 135 VIGPLLA--RFGE--AVVGLPGGCDIG-ERPVDLY----VRGLRALGAAVEI 177 (182)
Q Consensus 135 ~l~~lla--~~~~--~~~~~~G~~~l~-~Rpi~~l----~~~L~~lGa~v~~ 177 (182)
++=+++- .|++ .++++.|+-+-. .-|++-+ +-.|++||++++.
T Consensus 95 ~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvD~~~~v~lP~l~~~G~~~~l 146 (326)
T cd00874 95 VLQTLLPALLFADGPSTVTISGGTDVPWAPPIDYLRNVTLPLLERMGIEAEL 146 (326)
T ss_pred HHHHHHHHHhcCCCCEEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 5543332 2444 578889876665 3445443 4467899998764
No 42
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. ; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=88.10 E-value=1.6 Score=36.32 Aligned_cols=113 Identities=19% Similarity=0.275 Sum_probs=62.7
Q ss_pred HHHHhcccCCcEEEeeCCCC-----ChHH-HHHHHHHHHc-CCeEE-EeeeCCEEEEEcCCCCCCCCChhhhhhhhhHHH
Q 030153 63 LLAATLLCSNSCLLHNVPTG-----LSDT-KAMLSILRSL-GAKIE-FNERNKEILVNTDGVGRVEPCLEEMRKIRGGFF 134 (182)
Q Consensus 63 ~laAA~La~g~~~I~n~~~~-----s~Dv-~~~l~~L~~l-Ga~I~-~~~~~~~l~I~~~~~~~~~~~~~~~~~sgts~~ 134 (182)
.++.|+|++.+++|.|+-.+ ..+= ...++++.++ +++++ ++..+..+...+....+..... .|+.+|+..+
T Consensus 16 ~laLS~l~gkpi~I~~IR~~r~~PGL~~qh~~~l~ll~~it~g~~~g~~~~st~l~f~Pg~i~~g~~~~-d~~tagsi~l 94 (228)
T PF01137_consen 16 ALALSALTGKPIRIENIRANRPNPGLRPQHLSALRLLAKITNGSVIGISLGSTELTFRPGEIRGGDYTF-DCGTAGSISL 94 (228)
T ss_dssp HHHHHHHHT--EEEESTTTTSSS-S--HHHHHHHHHHHHHCCSEEEEESTTSSEEEEE--EE-ECEEEE-EEETTCBHHH
T ss_pred HHHHHhccCCCEEEEEEecCCCCCcccHHHHHHHHHHHHhcCCeecceecCCcEEEEECCCccCCcEEE-ecCCCceeee
Confidence 35556699999999998530 1121 2478888887 56665 2223457777775433221111 2566666666
Q ss_pred HHHHHhhh--hCC--eEEEecCCCCCCC-CChHHH----HHHHHHCCCEEE
Q 030153 135 VIGPLLAR--FGE--AVVGLPGGCDIGE-RPVDLY----VRGLRALGAAVE 176 (182)
Q Consensus 135 ~l~~lla~--~~~--~~~~~~G~~~l~~-Rpi~~l----~~~L~~lGa~v~ 176 (182)
++-+++-. |++ .++++.|+-.-.. -+++-+ +-.|++||+.++
T Consensus 95 ~lq~llp~~~f~~~~~~l~l~GgT~~~~~psvd~~~~v~lP~l~~~G~~~~ 145 (228)
T PF01137_consen 95 VLQALLPLLLFAKGPSRLTLTGGTNVPFSPSVDYIRQVFLPLLRKFGIPVE 145 (228)
T ss_dssp HHHHHCCCHCCSSSEEEEEEEEBSBBTTS--HHHHHHTCHHHHHHCT-ECE
T ss_pred eHHHHHHHHHhcCCCEEEEEEEecCCCCCCCHHHHHHHHHHHHHHcCCCcE
Confidence 66655443 444 4678888766653 344443 446888999876
No 43
>KOG3980 consensus RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=87.81 E-value=4.8 Score=35.62 Aligned_cols=121 Identities=21% Similarity=0.320 Sum_probs=71.1
Q ss_pred cCCHHHHHHHHHHhcccCCcEEEeeCCC-----CChHH-HHHHHHHHHc--CCeEEEeeeCCEEEEEcCCCCCCCCChhh
Q 030153 54 SGSKNSSLCLLAATLLCSNSCLLHNVPT-----GLSDT-KAMLSILRSL--GAKIEFNERNKEILVNTDGVGRVEPCLEE 125 (182)
Q Consensus 54 pgsKs~a~~~laAA~La~g~~~I~n~~~-----~s~Dv-~~~l~~L~~l--Ga~I~~~~~~~~l~I~~~~~~~~~~~~~~ 125 (182)
.|..+.-+ .+++|.|++.++++.+.-. +..|- ...+++|+++ |-.|+|+..+.++..++....+..... .
T Consensus 10 ~g~q~lr~-~lvls~Lsg~pvrv~kiR~~~~~PGlr~~~~s~lrLL~~iTnGs~ie~~~~gTtv~f~Pg~i~GG~~~~-d 87 (361)
T KOG3980|consen 10 GGGQALRL-RLVLSTLSGKPVRVEKIRAGRPNPGLKDQHLSFLRLLRDITNGSVIEIEYTGTTVIFTPGLILGGTVTH-D 87 (361)
T ss_pred cchHHHHH-HHHHHHhcCCceEEEEeccCCCCCCchHHHHHHHHHHHhhcCCcEEEEeecccEEEEcCceeeCCceEE-e
Confidence 34444444 5667778999999988754 02343 3599999997 778886555567766665433222211 1
Q ss_pred hhhhhhHHHHHHHHhhh--hCC--eEEEecCCCCCCCCC-h----HHHHHHHHHCCCEEE
Q 030153 126 MRKIRGGFFVIGPLLAR--FGE--AVVGLPGGCDIGERP-V----DLYVRGLRALGAAVE 176 (182)
Q Consensus 126 ~~~sgts~~~l~~lla~--~~~--~~~~~~G~~~l~~Rp-i----~~l~~~L~~lGa~v~ 176 (182)
|...+.--+|+=|++.. |.+ .++++.|.-.-..+| + ..++-.|+++|+.-+
T Consensus 88 c~t~~~I~y~leplL~l~pF~k~P~~i~lkGvTN~~~~p~VD~ik~~~lpvlkkFgv~~~ 147 (361)
T KOG3980|consen 88 CPTARSIGYFLEPLLPLCPFAKSPLRITLKGVTNSDGDPSVDYIKAVLLPVLKKFGVNDE 147 (361)
T ss_pred ccCccceeeehhhHHhhhcccCCCeEEEEecccCCCCCcchHHHHHHHHHHHHHhCcCcc
Confidence 33222223555555443 433 467788866654322 2 234678999999776
No 44
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=75.59 E-value=34 Score=27.72 Aligned_cols=95 Identities=17% Similarity=0.142 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHHc--CCeEEEeeeCCEEEEEcCCCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCC----
Q 030153 83 LSDTKAMLSILRSL--GAKIEFNERNKEILVNTDGVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDI---- 156 (182)
Q Consensus 83 s~Dv~~~l~~L~~l--Ga~I~~~~~~~~l~I~~~~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l---- 156 (182)
.++...+++.++++ ...+.++..++.+.|.=.|.. ..+. +..........-+-.... +.+.+.+.-+.-.
T Consensus 8 ~~E~~~fle~l~~~~~~~~~~v~~k~n~l~I~i~G~~-~eik-e~~~~Ik~~~~~vr~k~~--~~g~~~y~l~~i~r~a~ 83 (190)
T PF09840_consen 8 DEECEEFLERLSKMVKSIYIYVEVKGNSLKIEIQGYE-KEIK-EAIRRIKELVRRVRSKYN--KRGLYRYSLDDIFREAG 83 (190)
T ss_pred hHHHHHHHHHHHhhccCcEEEEEEeCCEEEEEEecCh-HHHH-HHHHHHHHHHHHHHHHhc--cCCceEEcHHHHHHHcC
Confidence 46778899999998 776664456776665533321 1111 111222222222212111 2222333222222
Q ss_pred CCCChHHHHHHHHHCCCEEEEcCcc
Q 030153 157 GERPVDLYVRGLRALGAAVEISYVF 181 (182)
Q Consensus 157 ~~Rpi~~l~~~L~~lGa~v~~~~~~ 181 (182)
..=|.+.+++.|+.+|.++++.++.
T Consensus 84 ~~vp~d~L~~~L~~~G~~ae~~~~~ 108 (190)
T PF09840_consen 84 YPVPPDLLVDALKLLGYKAEYREDV 108 (190)
T ss_pred CCCCHHHHHHHHHhCCCeeEEeCCe
Confidence 3567799999999999999988764
No 45
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=65.71 E-value=13 Score=32.54 Aligned_cols=124 Identities=14% Similarity=0.132 Sum_probs=69.1
Q ss_pred CCCCCCCCcccchhhhccceEEcCCCccceEEEccCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCe
Q 030153 20 QTQNPQIPTQTTQIREAETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAK 99 (182)
Q Consensus 20 ~~~~~~~~~~~~~~~~m~~i~I~~~~~l~g~v~vpgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~ 99 (182)
+..|.+-|++++.-+.|+.+.- + ++. +-..+. +|+|- -.+|+ . .+++..+.+++++.+-.
T Consensus 3 ~~~~~~~Lt~eEa~~~~~~il~-g------~~~---~~q~~A-fL~al-r~kge------t--~~Elag~~~a~~~~~~~ 62 (330)
T TIGR01245 3 KLIDGKDLSRDEAEQLMKEIMS-G------EAS---PAQIAA-ILAAL-RIKGE------T--PEEITGFAKAMREHAVK 62 (330)
T ss_pred hhhcCCCcCHHHHHHHHHHHHc-C------CCC---HHHHHH-HHHHH-HHcCC------C--HHHHHHHHHHHHHhCCC
Confidence 3456666777777777764432 1 111 233444 34441 13332 2 46777899999998876
Q ss_pred EEEeee-C-CEEEEEcCCCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCChHHHHHHHHHCCCEEE
Q 030153 100 IEFNER-N-KEILVNTDGVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 176 (182)
Q Consensus 100 I~~~~~-~-~~l~I~~~~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~ 176 (182)
+. .. . ..+-+-|+++.+..... . + ..+.+++|.+| ..+..+|...+.++ .. ..+.|+.+|+.+.
T Consensus 63 ~~--~~~~~~~iD~~gtggdg~~t~n-----i--s-t~~a~vlA~~G-~~V~kHG~r~~~s~-~G-s~d~le~LGi~~~ 128 (330)
T TIGR01245 63 VP--GRPVEDLVDIVGTGGDGANTIN-----I--S-TASAFVAAAAG-VKVAKHGNRSVSSK-SG-SADVLEALGVNLD 128 (330)
T ss_pred CC--CccCCCcccccCCCCCCCCccc-----c--H-HHHHHHHHhCC-CEEEEeCCCCCCCC-cc-HHHHHHHcCCCCC
Confidence 65 31 1 12212344433221110 0 1 23446677676 57889998888765 22 3789999998875
No 46
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=55.67 E-value=33 Score=30.04 Aligned_cols=81 Identities=12% Similarity=0.124 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCChH
Q 030153 83 LSDTKAMLSILRSLGAKIEFNERNKEILVNTDGVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVD 162 (182)
Q Consensus 83 s~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi~ 162 (182)
.+++..+.+++++....+. ..+..+-+-|+++.+..... -..++..++|..| .++..+|...+.++ .
T Consensus 52 ~~El~g~~~a~~~~~~~~~--~~~~~iDi~gtggdg~~t~n--------is~~~a~vlA~~G-~~V~kHG~~~~~s~--~ 118 (339)
T PRK00188 52 VDEIAGAARAMREHAVPVP--DPDDAVDIVGTGGDGANTFN--------ISTAAAFVAAAAG-VKVAKHGNRSVSSK--S 118 (339)
T ss_pred HHHHHHHHHHHHHhCCcCC--CCCCCCcccCCCCCCCCccc--------hHHHHHHHHHhCC-CEEEEECCCCCCCC--c
Confidence 4677779999998886655 32222323344433221110 0123345666666 57889998888765 2
Q ss_pred HHHHHHHHCCCEEE
Q 030153 163 LYVRGLRALGAAVE 176 (182)
Q Consensus 163 ~l~~~L~~lGa~v~ 176 (182)
--.+.|+.+|+.+.
T Consensus 119 GsadvLe~lGi~~~ 132 (339)
T PRK00188 119 GSADVLEALGVNLD 132 (339)
T ss_pred CHHHHHHHcCCCCC
Confidence 24689999998875
No 47
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=53.03 E-value=23 Score=28.93 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=29.1
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHCCCEEEEc
Q 030153 146 AVVGLPGGCDIGERPVDLYVRGLRALGAAVEIS 178 (182)
Q Consensus 146 ~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~~ 178 (182)
..++++|++.+..+.+..+++.|++.|.++...
T Consensus 73 ~~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lE 105 (212)
T COG0602 73 RGVSLTGGEPLLQPNLLELLELLKRLGFRIALE 105 (212)
T ss_pred ceEEEeCCcCCCcccHHHHHHHHHhCCceEEec
Confidence 358899999988889999999999999988753
No 48
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Members of this strictly eukaryotic protein family are not RNA 3'-phosphate cyclase (6.5.1.4), but rather a homolog with a distinct function, found in the nucleolus and required for ribosomal RNA processing. Homo sapiens has both a member of this RCL (RNA terminal phosphate cyclase like) family and EC 6.5.1.4, while Saccharomyces has a member of this family only.
Probab=51.20 E-value=78 Score=28.11 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=27.9
Q ss_pred HHHhccc-CCcEEEeeCCCCChHHHHHHHHHHHc-CCeEEE
Q 030153 64 LAATLLC-SNSCLLHNVPTGLSDTKAMLSILRSL-GAKIEF 102 (182)
Q Consensus 64 laAA~La-~g~~~I~n~~~~s~Dv~~~l~~L~~l-Ga~I~~ 102 (182)
+.-.+|+ ++.+++.=-.. +..+...++.+++| |+++++
T Consensus 292 l~~mALa~~~~S~i~~~~l-t~h~~t~l~vi~~f~~v~f~i 331 (360)
T TIGR03400 292 LLLMALGQEDVSKLRLGKL-SEYTVEFLRDLKEFFGVTFKI 331 (360)
T ss_pred HHHHHhCCCCcceEEecCC-CHHHHHHHHHHHHhcCCEEEE
Confidence 3333376 66667765555 68999999999998 899885
No 49
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=49.10 E-value=42 Score=22.27 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCeEEEee-eCCEEEEEcCCCC
Q 030153 87 KAMLSILRSLGAKIEFNE-RNKEILVNTDGVG 117 (182)
Q Consensus 87 ~~~l~~L~~lGa~I~~~~-~~~~l~I~~~~~~ 117 (182)
..+.++|+.||.+++ . .++.+.|..+..+
T Consensus 22 ~~i~~~L~~lg~~~~--~~~~~~~~v~vP~~R 51 (70)
T PF03484_consen 22 EEIIKILKRLGFKVE--KIDGDTLEVTVPSYR 51 (70)
T ss_dssp HHHHHHHHHTT-EEE--E-CTTEEEEEEETTS
T ss_pred HHHHHHHHHCCCEEE--ECCCCEEEEEcCCCc
Confidence 458899999999999 6 6788998876654
No 50
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=48.04 E-value=72 Score=26.50 Aligned_cols=103 Identities=23% Similarity=0.222 Sum_probs=53.2
Q ss_pred HHHHhcccCCcEEEeeCCC----CChHHHHHHHHHHHcCCeEEEeeeC--------------CEEEEEcCCCCCCCCChh
Q 030153 63 LLAATLLCSNSCLLHNVPT----GLSDTKAMLSILRSLGAKIEFNERN--------------KEILVNTDGVGRVEPCLE 124 (182)
Q Consensus 63 ~laAA~La~g~~~I~n~~~----~s~Dv~~~l~~L~~lGa~I~~~~~~--------------~~l~I~~~~~~~~~~~~~ 124 (182)
.+....+....++++=... ..+.+...++-|+++|+++-+|.-| +.++|++.-.+....+.
T Consensus 111 ~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~l~~d~iKID~~fi~~i~~~~- 189 (256)
T COG2200 111 LLARLGLPPHRLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGTGYSSLSYLKRLPPDILKIDRSFVRDLETDA- 189 (256)
T ss_pred HHHHhCCCcceEEEEEeCchhhcCHHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhhCCCCeEEECHHHHhhcccCc-
Confidence 3444334444555543221 0234566899999999999854433 24555543211111110
Q ss_pred hhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCChHHHHHHHHHCCCEEE
Q 030153 125 EMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 176 (182)
Q Consensus 125 ~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~ 176 (182)
....-++-+..++...+ ..++.-|.+. ..-++.|+++|++.-
T Consensus 190 ---~~~~iv~~iv~la~~l~-~~vvaEGVEt------~~ql~~L~~~G~~~~ 231 (256)
T COG2200 190 ---RDQAIVRAIVALAHKLG-LTVVAEGVET------EEQLDLLRELGCDYL 231 (256)
T ss_pred ---chHHHHHHHHHHHHHCC-CEEEEeecCC------HHHHHHHHHcCCCeE
Confidence 01112233333443344 3566666554 445899999999853
No 51
>PF07833 Cu_amine_oxidN1: Copper amine oxidase N-terminal domain; InterPro: IPR012854 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents a domain found at the N-terminal of certain copper amine oxidases, as well as in related proteins such as cell wall hydrolase and N-acetylmuramoyl-L-alanine amidase. This domain consists of a five-stranded antiparallel beta-sheet twisted around an alpha helix [, ]. ; PDB: 1SPU_A 2WGQ_A 2WO0_A 1JRQ_A 1QAF_B 1D6U_B 1QAL_A 2WOF_A 1OAC_B 1QAK_A ....
Probab=43.70 E-value=38 Score=22.83 Aligned_cols=26 Identities=23% Similarity=0.516 Sum_probs=18.9
Q ss_pred HHHHHHHcCCeEEEeeeCCEEEEEcC
Q 030153 89 MLSILRSLGAKIEFNERNKEILVNTD 114 (182)
Q Consensus 89 ~l~~L~~lGa~I~~~~~~~~l~I~~~ 114 (182)
+..+.+.||++|+||.+.+++.+...
T Consensus 9 l~~i~~~lg~~v~~d~~~~~v~i~~~ 34 (93)
T PF07833_consen 9 LRFIAEALGAKVSWDNKTKTVTITKG 34 (93)
T ss_dssp HHHHHHHHT-EEEEETTTTEEEEEET
T ss_pred HHHHHHHcCCEEEEEcCCcEEEEEee
Confidence 34577899999997666778888654
No 52
>PLN02641 anthranilate phosphoribosyltransferase
Probab=42.26 E-value=82 Score=27.80 Aligned_cols=81 Identities=16% Similarity=0.119 Sum_probs=48.2
Q ss_pred ChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCChH
Q 030153 83 LSDTKAMLSILRSLGAKIEFNERNKEILVNTDGVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVD 162 (182)
Q Consensus 83 s~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi~ 162 (182)
.+++..+.+++++.+..+. .....+-+-|+++++... ..-| + ....++|..| ..+..+|...+.++ .
T Consensus 52 ~eEiag~~~a~~~~~~~~~--~~~~~~D~~gtGGdg~~t----~nis-t---~aa~v~A~~G-~~V~kHGnr~~ss~--~ 118 (343)
T PLN02641 52 FEEIAGLARAMIKRARKVD--GLVDAVDIVGTGGDGANT----VNIS-T---GSSILAAACG-AKVAKQGNRSSSSA--C 118 (343)
T ss_pred HHHHHHHHHHHHHhCCCCC--CCCCCCceeCCCCCCCCc----cccH-H---HHHHHHHhCC-CeEEEeCCCCCCCc--c
Confidence 4677779999999886655 322233333444332211 0111 1 1224455555 56889998888764 3
Q ss_pred HHHHHHHHCCCEEE
Q 030153 163 LYVRGLRALGAAVE 176 (182)
Q Consensus 163 ~l~~~L~~lGa~v~ 176 (182)
--.+.|+.+|+.++
T Consensus 119 GsaDvLeaLGi~~~ 132 (343)
T PLN02641 119 GSADVLEALGVAID 132 (343)
T ss_pred CHHHHHHHcCCCCC
Confidence 34888999999875
No 53
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=42.17 E-value=34 Score=28.30 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=29.5
Q ss_pred CeEEEecCCCCCCCCChHHHHHHHHHCCCEEEE-cCc
Q 030153 145 EAVVGLPGGCDIGERPVDLYVRGLRALGAAVEI-SYV 180 (182)
Q Consensus 145 ~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~-~~~ 180 (182)
...++++|++.+-.+-+..+++.|++.|..+.. ++|
T Consensus 73 ~~~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNG 109 (238)
T TIGR03365 73 PLHVSLSGGNPALQKPLGELIDLGKAKGYRFALETQG 109 (238)
T ss_pred CCeEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCC
Confidence 345889999999877899999999999998863 344
No 54
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=39.97 E-value=80 Score=28.92 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHcCCeEEEeeeCC-EEEEEcCCCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCCh
Q 030153 83 LSDTKAMLSILRSLGAKIEFNERNK-EILVNTDGVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPV 161 (182)
Q Consensus 83 s~Dv~~~l~~L~~lGa~I~~~~~~~-~l~I~~~~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi 161 (182)
.+++..+.++|++.|..+.|....+ .+=+-|+++.+. .++ ..+.|++|++| ..+.-+|...+.+.
T Consensus 52 ~~Ei~~lt~aM~~sg~~~~~~~~~~~~vD~~gTGGdG~----------kt~-ni~a~ivAA~G-v~VaKhgnR~lss~-- 117 (434)
T PRK06078 52 DRERADLTMAMVNSGDTIDLSAIEGIKVDKHSTGGVGD----------TTT-LVLAPLVAAFG-VPVAKMSGRGLGHT-- 117 (434)
T ss_pred HHHHHHHHHHHHHhCCcccCcccCCCeeEecCCCCCCC----------Cch-HHHHHHHHcCC-CCeeeeCCCCcCCC--
Confidence 4778889999999999888311112 233334443211 112 24668888877 45666776666532
Q ss_pred HHHHHHHHHC-CCEEEE
Q 030153 162 DLYVRGLRAL-GAAVEI 177 (182)
Q Consensus 162 ~~l~~~L~~l-Ga~v~~ 177 (182)
.-=+|.|+.+ |++++.
T Consensus 118 ~GTaD~LE~lpG~~~~l 134 (434)
T PRK06078 118 GGTIDKLESIKGFHVEI 134 (434)
T ss_pred cchHHHHHhCCCCCCCC
Confidence 2236777777 776653
No 55
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=38.55 E-value=87 Score=28.73 Aligned_cols=80 Identities=18% Similarity=0.276 Sum_probs=46.0
Q ss_pred ChHHHHHHHHHHHcCCeEEEee---eCCEEEEEcCCCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCC
Q 030153 83 LSDTKAMLSILRSLGAKIEFNE---RNKEILVNTDGVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGER 159 (182)
Q Consensus 83 s~Dv~~~l~~L~~lGa~I~~~~---~~~~l~I~~~~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~R 159 (182)
.+++..+.++|.+.|..+.|+. .+..+-+-|+++.+. + .| ..+.|++|++| ..+.-+|+..+.+.
T Consensus 52 ~~Ei~~lt~aM~~sg~~i~~~~~~~~~~~vDkhgTGGdG~--------n--iS-t~~apivAA~G-v~VaKhgnR~iss~ 119 (437)
T TIGR02643 52 RDERVALTLAMRDSGDVLDWRSLDLNGPVVDKHSTGGVGD--------V--VS-LMLGPIVAACG-GYVPMISGRGLGHT 119 (437)
T ss_pred HHHHHHHHHHHHHhCCcccCcccccCCCeeEecCCCCCCc--------c--hh-HHHHHHHHhCC-CCeeeecCCCcCCC
Confidence 4677889999999999887320 122333334544222 1 12 23457888777 45666666665421
Q ss_pred ChHHHHHHHHHC-CCEEE
Q 030153 160 PVDLYVRGLRAL-GAAVE 176 (182)
Q Consensus 160 pi~~l~~~L~~l-Ga~v~ 176 (182)
.-=+|.|+.+ |++++
T Consensus 120 --~GTaD~LEalpG~~v~ 135 (437)
T TIGR02643 120 --GGTLDKLEAIPGYDIF 135 (437)
T ss_pred --CchHHHHHhCCCCCCC
Confidence 2236666666 66654
No 56
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=38.38 E-value=2.3e+02 Score=24.77 Aligned_cols=63 Identities=25% Similarity=0.341 Sum_probs=35.7
Q ss_pred eEEcCCCccceE--EEc--cCCHHHHHH-HHHHhcccCCcEEE--e---eCCCCC---hHH-HHHHHHHHHcCCeEEE
Q 030153 39 LTITGPTQLSGH--VPI--SGSKNSSLC-LLAATLLCSNSCLL--H---NVPTGL---SDT-KAMLSILRSLGAKIEF 102 (182)
Q Consensus 39 i~I~~~~~l~g~--v~v--pgsKs~a~~-~laAA~La~g~~~I--~---n~~~~s---~Dv-~~~l~~L~~lGa~I~~ 102 (182)
+...|+.-..|. +.+ .||-+..+. +|..+++++++++| + |++. + |.+ ..++-+|++||+++++
T Consensus 70 l~f~Pg~i~gG~~~~d~~tagsi~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~-sPsvD~~~~v~lP~l~~~G~~~~l 146 (326)
T cd00874 70 LEFEPGKIKGGDYEFDIGTAGSITLVLQTLLPALLFADGPSTVTISGGTDVPW-APPIDYLRNVTLPLLERMGIEAEL 146 (326)
T ss_pred EEEECCCccCCcEEEeCCCCcchHHHHHHHHHHHhcCCCCEEEEEEcccCCCC-CCCHHHHHHHHHHHHHhCCCcEEE
Confidence 555665533443 333 445554443 44455567875555 3 4444 3 333 3478889999988773
No 57
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=37.34 E-value=72 Score=27.96 Aligned_cols=38 Identities=11% Similarity=0.155 Sum_probs=28.0
Q ss_pred HHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHc-CCeEE
Q 030153 63 LLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSL-GAKIE 101 (182)
Q Consensus 63 ~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~l-Ga~I~ 101 (182)
++.-.+|++|.+++.--.. ++.+...++.+++| |++++
T Consensus 288 lll~mALa~g~S~i~~~~l-T~h~~t~l~v~~~f~~v~f~ 326 (326)
T TIGR03399 288 LILYMALASGESRFTTSEL-TMHLRTNIWVIEQFLPVRFE 326 (326)
T ss_pred HHHHHHhcCCCceEEecCC-CHHHHHHHHHHHHHhCCeeC
Confidence 3333348888777776666 78999999999998 77653
No 58
>PRK08136 glycosyl transferase family protein; Provisional
Probab=36.83 E-value=1.6e+02 Score=25.68 Aligned_cols=81 Identities=16% Similarity=0.180 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHcCCeEEEeeeC-C--EEEEEcCCCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCC
Q 030153 83 LSDTKAMLSILRSLGAKIEFNERN-K--EILVNTDGVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGER 159 (182)
Q Consensus 83 s~Dv~~~l~~L~~lGa~I~~~~~~-~--~l~I~~~~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~R 159 (182)
.+++.-+.+++++.-..+. ..+ . .+-+-|.+++....+ .. .+...++|..| ..+..+|...+.++
T Consensus 56 ~eElaG~~~a~~~~~~~~~--~~~~~~~~iD~~gtgGd~~t~n------is---t~aA~vlA~~G-~~V~kHGnr~vssk 123 (317)
T PRK08136 56 EAEMLGFLDAMQAHTIPLT--PPAGRPMPVVIPSYNGARKQAN------LT---PLLALLLAREG-VPVLVHGVSEDPTR 123 (317)
T ss_pred HHHHHHHHHHHHHhCCcCC--CCCCCCceEEeCCCCCCCCCcC------hH---HHHHHHHHHCC-CeEEEECCCCCCCc
Confidence 3677778999998776654 322 1 232334433222111 11 12223445555 56889998888765
Q ss_pred ChHHHHHHHHHCCCEEEE
Q 030153 160 PVDLYVRGLRALGAAVEI 177 (182)
Q Consensus 160 pi~~l~~~L~~lGa~v~~ 177 (182)
.-..+.|+++|++++.
T Consensus 124 --~gsadvleaLGi~~~~ 139 (317)
T PRK08136 124 --VTSAEIFEALGIPPTL 139 (317)
T ss_pred --ccHHHHHHHcCCCCCC
Confidence 4458999999998853
No 59
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=36.54 E-value=1.2e+02 Score=28.28 Aligned_cols=80 Identities=16% Similarity=0.150 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHcCCeEEEeeeC-CEEEEEcCCCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCChH
Q 030153 84 SDTKAMLSILRSLGAKIEFNERN-KEILVNTDGVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVD 162 (182)
Q Consensus 84 ~Dv~~~l~~L~~lGa~I~~~~~~-~~l~I~~~~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi~ 162 (182)
+++..+.++|++....+. ... ..+-+-|+++.+..... -| .....++|.+| ..+..+|...+.++ .
T Consensus 245 ~El~g~~~a~~~~~~~~~--~~~~~~~D~~gtggdg~~t~n----is----t~~a~v~A~~G-~~V~kHG~r~~ss~--~ 311 (534)
T PRK14607 245 DELAGFASVMREKSRHIP--APSPRTVDTCGTGGDGFGTFN----IS----TTSAFVVAAAG-VPVAKHGNRAVSSK--S 311 (534)
T ss_pred HHHHHHHHHHHHhCCcCC--CCCCCceEEccCCCCCCCccc----cH----HHHHHHHHhCC-CcEEEECCCCCCCC--c
Confidence 566668888888776665 322 23334455443321110 11 12335556666 56889998888765 2
Q ss_pred HHHHHHHHCCCEEE
Q 030153 163 LYVRGLRALGAAVE 176 (182)
Q Consensus 163 ~l~~~L~~lGa~v~ 176 (182)
--.+.|+.+|+.+.
T Consensus 312 Gsadvle~lGv~~~ 325 (534)
T PRK14607 312 GSADVLEALGVKLE 325 (534)
T ss_pred cHHHHHHHcCCCCC
Confidence 24788999998874
No 60
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.17 E-value=2.4e+02 Score=23.14 Aligned_cols=90 Identities=22% Similarity=0.237 Sum_probs=50.0
Q ss_pred hHHHH--HHHHHHHcCCeEEEeeeC-CEEEEEcCCCCCCCCChhhhhhhhhHHHHHHHHhhh-------hCCeEEEecCC
Q 030153 84 SDTKA--MLSILRSLGAKIEFNERN-KEILVNTDGVGRVEPCLEEMRKIRGGFFVIGPLLAR-------FGEAVVGLPGG 153 (182)
Q Consensus 84 ~Dv~~--~l~~L~~lGa~I~~~~~~-~~l~I~~~~~~~~~~~~~~~~~sgts~~~l~~lla~-------~~~~~~~~~G~ 153 (182)
+|.+. +++.++.|+....+...+ +.+.|.=.+.. + +...+++.+.-+.-. -+.+.+++.-.
T Consensus 11 ~D~E~e~flE~lqr~~~~~~v~~~g~n~vkV~v~G~~------~---eireair~irel~~~vr~r~~~~~~~ly~l~~~ 81 (204)
T COG3286 11 DDVEKEEFLERLQRMVKDTYVEIRGKNRVKVNVFGTK------D---EIREAIRAIRELHRRVRRRLYPDRQGLYTLYRI 81 (204)
T ss_pred CcHHHHHHHHHHHHhCcceEEEEccCceEEEEEecch------H---HHHHHHHHHHHHHHHHHhhhccCccceEeeHhH
Confidence 56654 899999999543321444 66655433211 1 122233444333322 12234444422
Q ss_pred CCCC--CCChHHHHHHHHHCCCEEEEcCccC
Q 030153 154 CDIG--ERPVDLYVRGLRALGAAVEISYVFF 182 (182)
Q Consensus 154 ~~l~--~Rpi~~l~~~L~~lGa~v~~~~~~~ 182 (182)
-+.. .=|-+-+.++|+-+|-.++..+|++
T Consensus 82 ~~~a~p~Vp~~vl~daLk~~GyrVevr~~~l 112 (204)
T COG3286 82 FEEASPNVPPDVLIDALKLLGYRVEVRGGEL 112 (204)
T ss_pred HHhhcCCCCHHHHHHHHHhCCceEEeeCcee
Confidence 2222 2467889999999999999988764
No 61
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=35.23 E-value=53 Score=23.44 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=19.6
Q ss_pred cCCCCCCCCChHHHHHHHHHCCCEEEEcCcc
Q 030153 151 PGGCDIGERPVDLYVRGLRALGAAVEISYVF 181 (182)
Q Consensus 151 ~G~~~l~~Rpi~~l~~~L~~lGa~v~~~~~~ 181 (182)
.|...+|.=|.-.+++.|.+.|++|...|-+
T Consensus 9 ~n~~D~R~Sp~~~l~~~L~~~g~~V~~~DP~ 39 (106)
T PF03720_consen 9 PNTDDIRESPALELIEELKERGAEVSVYDPY 39 (106)
T ss_dssp TTSS--TT-HHHHHHHHHHHTT-EEEEE-TT
T ss_pred CCCcccccCHHHHHHHHHHHCCCEEEEECCc
Confidence 4556777778888888888888888766543
No 62
>PHA02627 hypothetical protein; Provisional
Probab=35.09 E-value=31 Score=23.10 Aligned_cols=20 Identities=35% Similarity=0.700 Sum_probs=17.2
Q ss_pred ChHHHHHHHHHHHcCCeEEE
Q 030153 83 LSDTKAMLSILRSLGAKIEF 102 (182)
Q Consensus 83 s~Dv~~~l~~L~~lGa~I~~ 102 (182)
.+|+..++++|.++|+.|.+
T Consensus 34 ed~i~ellniltelgcdvdf 53 (73)
T PHA02627 34 EDDITELLNILTELGCDVDF 53 (73)
T ss_pred HHHHHHHHHHHHHhCCCccc
Confidence 46778899999999999983
No 63
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=34.76 E-value=1.4e+02 Score=26.42 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=28.7
Q ss_pred HHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHc-CCeEEE
Q 030153 63 LLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSL-GAKIEF 102 (182)
Q Consensus 63 ~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~l-Ga~I~~ 102 (182)
++.-.+|++|.+++.--.. +..+...++.+++| |+++++
T Consensus 291 ll~~mALa~g~S~i~~~~l-T~h~~t~l~vi~~f~~v~f~v 330 (343)
T PRK04204 291 LILPMALAGGEGSFTVAEL-TSHLLTNIWVVEKFLPVKFEV 330 (343)
T ss_pred HHHHHHhCCCCceEEecCC-CHHHHHHHHHHHHhcCcEEEE
Confidence 3333448888666765555 68999999999997 788875
No 64
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.47 E-value=48 Score=23.95 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHcCCeEEEeeeCCEE
Q 030153 84 SDTKAMLSILRSLGAKIEFNERNKEI 109 (182)
Q Consensus 84 ~Dv~~~l~~L~~lGa~I~~~~~~~~l 109 (182)
+|-+.+.+.|+++|..|+ .+++.+
T Consensus 12 ~~~dri~~~l~e~g~~v~--~eGD~i 35 (96)
T COG4004 12 PDPDRIMRGLSELGWTVS--EEGDRI 35 (96)
T ss_pred CCHHHHHHHHHHhCeeEe--ecccEE
Confidence 455678999999999998 777644
No 65
>COG4274 Uncharacterized conserved protein [Function unknown]
Probab=34.25 E-value=1.9e+02 Score=21.26 Aligned_cols=71 Identities=18% Similarity=0.200 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcCCeEEE---eeeCCEEEEEcCCCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCCh
Q 030153 85 DTKAMLSILRSLGAKIEF---NERNKEILVNTDGVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPV 161 (182)
Q Consensus 85 Dv~~~l~~L~~lGa~I~~---~~~~~~l~I~~~~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi 161 (182)
-..+.-+.++++|.++.- -..+.++.+.. +.|.+ ...++|...+.++ |..+.+ .|+.=|+
T Consensus 31 R~~av~~~les~G~k~~~~y~T~GeYD~V~i~------EapDd-----a~~~~~~l~l~s~-GnvRt~-----TL~Afp~ 93 (104)
T COG4274 31 RAAAVRALLESMGGKVKEQYWTLGEYDVVAIV------EAPDD-----AVATRFSLALASR-GNVRTV-----TLRAFPV 93 (104)
T ss_pred HHHHHHHHHHHcCcEEEEEEEeeccccEEEEE------ecCCH-----HHHHHHHHHHHhc-CCeEEE-----eeccCCH
Confidence 445677889999998861 00112222222 11221 1345777676664 554444 5677899
Q ss_pred HHHHHHHHHCC
Q 030153 162 DLYVRGLRALG 172 (182)
Q Consensus 162 ~~l~~~L~~lG 172 (182)
+.+++.|++++
T Consensus 94 ~~~~~~lkk~~ 104 (104)
T COG4274 94 DAMLEILKKMA 104 (104)
T ss_pred HHHHHHHhhcC
Confidence 99999998874
No 66
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=33.80 E-value=1.7e+02 Score=26.50 Aligned_cols=80 Identities=16% Similarity=0.231 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHHcCCeEEEeee-CCEEEEEcCCCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCCh
Q 030153 83 LSDTKAMLSILRSLGAKIEFNER-NKEILVNTDGVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPV 161 (182)
Q Consensus 83 s~Dv~~~l~~L~~lGa~I~~~~~-~~~l~I~~~~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi 161 (182)
.+++..+.++|++.|-.+.|... +..+-+-|++..+.. .+ ..+.|++|++| ..+.-+|...+.+.
T Consensus 50 ~eEi~g~t~Am~~~~~~l~~~~~~~~~vD~~gTGGdG~~----------iS-t~~a~ivAa~G-v~VaKhgnR~lss~-- 115 (405)
T TIGR02644 50 DEETAYLTKAMIDSGEVLDLSSLPGPKVDKHSTGGVGDK----------VS-LVLGPIVAACG-VKVAKMSGRGLGHT-- 115 (405)
T ss_pred HHHHHHHHHHHHHhCCcCCCcccCCCeeEEeCCCCCCCC----------ch-HHHHHHHHhCC-CCEEeeCCCCCCCc--
Confidence 46778899999999988873111 123333455543221 12 23458888877 46778887777654
Q ss_pred HHHHHHHHHCC-CEEE
Q 030153 162 DLYVRGLRALG-AAVE 176 (182)
Q Consensus 162 ~~l~~~L~~lG-a~v~ 176 (182)
.--.+.|+.+| ++++
T Consensus 116 ~GTaD~LE~lgG~~v~ 131 (405)
T TIGR02644 116 GGTIDKLESIPGFRTE 131 (405)
T ss_pred chHHHHHHhcCCCCCC
Confidence 33577777777 6664
No 67
>PF06076 Orthopox_F14: Orthopoxvirus F14 protein; InterPro: IPR009280 This family consists of several short Orthopoxvirus F14 proteins. The function of this protein is unknown.
Probab=33.01 E-value=34 Score=22.91 Aligned_cols=20 Identities=35% Similarity=0.675 Sum_probs=17.0
Q ss_pred ChHHHHHHHHHHHcCCeEEE
Q 030153 83 LSDTKAMLSILRSLGAKIEF 102 (182)
Q Consensus 83 s~Dv~~~l~~L~~lGa~I~~ 102 (182)
.+|+..++++|.++|+.|.+
T Consensus 34 ed~i~ellniltelgcdvdf 53 (73)
T PF06076_consen 34 EDDIMELLNILTELGCDVDF 53 (73)
T ss_pred HHHHHHHHHHHHHhCCCccc
Confidence 36777899999999999983
No 68
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=32.56 E-value=1e+02 Score=19.95 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=21.2
Q ss_pred HHHHHHHHcCCeEEEeee--CCEEEEEcCCCC
Q 030153 88 AMLSILRSLGAKIEFNER--NKEILVNTDGVG 117 (182)
Q Consensus 88 ~~l~~L~~lGa~I~~~~~--~~~l~I~~~~~~ 117 (182)
.+.++|++||..++ .. ++.+.|..+..+
T Consensus 23 ei~~~L~~lg~~~~--~~~~~~~~~v~~P~~R 52 (71)
T smart00874 23 EIEEILKRLGFEVE--VSGDDDTLEVTVPSYR 52 (71)
T ss_pred HHHHHHHHCCCeEE--ecCCCCeEEEECCCCc
Confidence 47899999999998 43 467888766543
No 69
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=32.22 E-value=1.2e+02 Score=28.43 Aligned_cols=82 Identities=12% Similarity=0.041 Sum_probs=48.2
Q ss_pred ChHHHHHHHHHHHcCCeEEEeeeC-CEEEEEcCCCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCCh
Q 030153 83 LSDTKAMLSILRSLGAKIEFNERN-KEILVNTDGVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPV 161 (182)
Q Consensus 83 s~Dv~~~l~~L~~lGa~I~~~~~~-~~l~I~~~~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi 161 (182)
.+++..+.++|++.+..+. ..+ ..+-+-|+++.+.... +-| .....++|+.| ..+...|...+.++
T Consensus 249 ~eEl~g~~~a~~~~~~~~~--~~~~~~iD~~gtGgdg~~t~----nis----t~aa~v~A~~G-v~V~kHG~r~~ss~-- 315 (531)
T PRK09522 249 PNEIAGAATALLENAAPFP--RPDYLFADIVGTGGDGSNSI----NIS----TASAFVAAACG-LKVAKHGNRSVSSK-- 315 (531)
T ss_pred HHHHHHHHHHHHHhCCCCC--CCCCCcccccCCCCCCCCCc----ccH----HHHHHHHHhCC-CcEEEeCCCCCCCC--
Confidence 3566668888888776554 322 2233445544332111 111 12235556556 56889998888765
Q ss_pred HHHHHHHHHCCCEEEE
Q 030153 162 DLYVRGLRALGAAVEI 177 (182)
Q Consensus 162 ~~l~~~L~~lGa~v~~ 177 (182)
.-..+.|+.+|+++..
T Consensus 316 ~GsadvlealGi~~~~ 331 (531)
T PRK09522 316 SGSSDLLAAFGINLDM 331 (531)
T ss_pred ccHHHHHHHcCCCCCC
Confidence 3448899999998753
No 70
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=31.24 E-value=1.5e+02 Score=21.88 Aligned_cols=41 Identities=15% Similarity=0.012 Sum_probs=27.6
Q ss_pred HHhhhhCCeEEEecCCCCCCCCChHHHHHHHHHCCCEEEEc
Q 030153 138 PLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEIS 178 (182)
Q Consensus 138 ~lla~~~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~~ 178 (182)
+++....+..+.+.|..+-..++-..+.+.|++.|+.++.-
T Consensus 47 ~l~~~~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm 87 (114)
T cd05125 47 LFELLEPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVV 87 (114)
T ss_pred HHHhccCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEE
Confidence 34443334456666644445666678899999999999864
No 71
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=30.10 E-value=43 Score=25.74 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=23.9
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHCCCEEEE
Q 030153 147 VVGLPGGCDIGERPVDLYVRGLRALGAAVEI 177 (182)
Q Consensus 147 ~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~ 177 (182)
-++|.|++ +..+-+..+++.+++.|..+..
T Consensus 64 gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i~l 93 (147)
T TIGR02826 64 CVLFLGGE-WNREALLSLLKIFKEKGLKTCL 93 (147)
T ss_pred EEEEechh-cCHHHHHHHHHHHHHCCCCEEE
Confidence 37889988 7666788888889998888754
No 72
>PRK10060 RNase II stability modulator; Provisional
Probab=29.50 E-value=1.6e+02 Score=27.99 Aligned_cols=82 Identities=12% Similarity=0.023 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHcCCeEEEeeeC--------------CEEEEEcCCCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEE
Q 030153 84 SDTKAMLSILRSLGAKIEFNERN--------------KEILVNTDGVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVG 149 (182)
Q Consensus 84 ~Dv~~~l~~L~~lGa~I~~~~~~--------------~~l~I~~~~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~ 149 (182)
+.+...++.|+++|++|-+|.-+ +.++|++.-......+. ....-+.-+..++..++ ..++
T Consensus 541 ~~~~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~l~~d~iKiD~sfv~~i~~~~----~~~~~v~~ii~~a~~lg-~~vi 615 (663)
T PRK10060 541 ELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQSFVRDIHKQP----VSQSLVRAIVAVAQALN-LQVI 615 (663)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHhCCCCEEEECHHHHhccccCc----chHHHHHHHHHHHHHCC-CcEE
Confidence 34456788999999999854433 23444442111111110 11122333345555555 3566
Q ss_pred ecCCCCCCCCChHHHHHHHHHCCCEEE
Q 030153 150 LPGGCDIGERPVDLYVRGLRALGAAVE 176 (182)
Q Consensus 150 ~~G~~~l~~Rpi~~l~~~L~~lGa~v~ 176 (182)
..|.+. ...++.|+++|++.-
T Consensus 616 AeGVEt------~~q~~~l~~~G~d~~ 636 (663)
T PRK10060 616 AEGVET------AKEDAFLTKNGVNER 636 (663)
T ss_pred EecCCC------HHHHHHHHHcCCCEE
Confidence 777654 456888999999874
No 73
>PHA02780 hypothetical protein; Provisional
Probab=29.34 E-value=23 Score=23.70 Aligned_cols=28 Identities=25% Similarity=0.333 Sum_probs=22.9
Q ss_pred CCCCCCChHHHHHHHHHCCCEEEEcCcc
Q 030153 154 CDIGERPVDLYVRGLRALGAAVEISYVF 181 (182)
Q Consensus 154 ~~l~~Rpi~~l~~~L~~lGa~v~~~~~~ 181 (182)
-.+-++-+-.++..|..+|++|...++|
T Consensus 30 ~eided~i~ellniltelgcdvdfde~f 57 (73)
T PHA02780 30 MEIDEDEIMELLNILTELGCDVDFDENF 57 (73)
T ss_pred eeechHHHHHHHHHHHHhCCCcccccch
Confidence 3455788899999999999999877664
No 74
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. ; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=29.14 E-value=2.1e+02 Score=23.73 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=27.9
Q ss_pred HHHHhcccCCc-EEEeeCCCCChHHHHHHHHHHHc-CCeEE
Q 030153 63 LLAATLLCSNS-CLLHNVPTGLSDTKAMLSILRSL-GAKIE 101 (182)
Q Consensus 63 ~laAA~La~g~-~~I~n~~~~s~Dv~~~l~~L~~l-Ga~I~ 101 (182)
++.-.+|++|+ ++++--.. +..++..++.+++| |++++
T Consensus 186 ll~~mALa~g~vS~i~~g~l-t~h~~t~l~vi~~fl~v~f~ 225 (228)
T PF01137_consen 186 LLLFMALAKGDVSRIRVGPL-TLHTVTNLRVIEQFLGVKFK 225 (228)
T ss_dssp HHHHHHCCTSSEEEEEESCS-SHHHHHHHHHHHHHCS-EEE
T ss_pred HHHHHHhCCCCceEEEecCC-CHHHHHHHHHHHHHcCcEEE
Confidence 44444488885 58886666 78999999999995 78877
No 75
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=27.81 E-value=1.8e+02 Score=26.75 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=47.4
Q ss_pred ChHHHHHHHHHHHcCCeEEEee---eCCEEEEEcCCCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCC
Q 030153 83 LSDTKAMLSILRSLGAKIEFNE---RNKEILVNTDGVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGER 159 (182)
Q Consensus 83 s~Dv~~~l~~L~~lGa~I~~~~---~~~~l~I~~~~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~R 159 (182)
.+++..+.++|++-|-.+.|.. .+..+-+-++++.+. + .+ ..+.|++|++| ..+.-+|+..+.+.
T Consensus 53 ~eEi~~lt~Am~~sg~~i~~~~~d~~~~~vDkhgTGGdG~--------n--iS-~~~a~ivAa~G-v~VaKhg~R~lss~ 120 (440)
T PRK05820 53 RPERVALTLAMRDSGEVLDWSSLNLNGPIVDKHSTGGVGD--------K--IS-LMLAPMVAACG-GYVPMISGRGLGHT 120 (440)
T ss_pred HHHHHHHHHHHHHhCCcCCCccccCCCCeEEEcCCCCCCc--------c--HH-HHHHHHHHhCC-CCEEeeCCCCCCCc
Confidence 4778889999999998886311 122232334443221 1 12 23358888777 45777777666532
Q ss_pred ChHHHHHHHHHC-CCEEEE
Q 030153 160 PVDLYVRGLRAL-GAAVEI 177 (182)
Q Consensus 160 pi~~l~~~L~~l-Ga~v~~ 177 (182)
.--.|.|+.+ |++++.
T Consensus 121 --~GTaD~LE~LpG~~v~l 137 (440)
T PRK05820 121 --GGTLDKLEAIPGYRAFP 137 (440)
T ss_pred --ccHHHHHHhCCCCCCCC
Confidence 1256777777 776653
No 76
>PRK07394 hypothetical protein; Provisional
Probab=27.69 E-value=3e+02 Score=24.17 Aligned_cols=85 Identities=20% Similarity=0.128 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHHcCCeEEEeeeCC--EEEEEcCCCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCC
Q 030153 83 LSDTKAMLSILRSLGAKIEFNERNK--EILVNTDGVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERP 160 (182)
Q Consensus 83 s~Dv~~~l~~L~~lGa~I~~~~~~~--~l~I~~~~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rp 160 (182)
.+++..+.+++++....+. ...+ .+-+-|+++++..... +..+. ..-++|.+| .++..+|.....++-
T Consensus 58 ~eEiaG~~~a~~~~~~~~~--~~~~~~~~d~~GtggDG~~~t~----NiSt~---aA~v~A~~G-v~V~kHGnr~~ssk~ 127 (342)
T PRK07394 58 PEELAGMLDTYDELGPKLQ--SPSNQRPPIVFGMPYDGRSRTA----PIYPL---TALILAAAG-QPVVLHGGDRMPTKY 127 (342)
T ss_pred HHHHHHHHHHHHHhCCCCC--CCCCCCceeEEeCCCCCCCCCc----ccHHH---HHHHHHHCC-CeEEEECCCCCCCCC
Confidence 4677779999998776654 3221 2334455544321111 11111 113344455 578899988776542
Q ss_pred hHHHHHHHHHCCCEEEE
Q 030153 161 VDLYVRGLRALGAAVEI 177 (182)
Q Consensus 161 i~~l~~~L~~lGa~v~~ 177 (182)
=-...+.|+.+|+.++.
T Consensus 128 GvtsaDvLe~LGv~~~~ 144 (342)
T PRK07394 128 GVPLVELWQGLGVDLTG 144 (342)
T ss_pred CchHHHHHHHCCCCCCC
Confidence 12247889999998754
No 77
>PRK13782 phosphocarrier protein Chr; Provisional
Probab=27.66 E-value=92 Score=21.30 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=21.8
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHCCCEEEE
Q 030153 147 VVGLPGGCDIGERPVDLYVRGLRALGAAVEI 177 (182)
Q Consensus 147 ~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~ 177 (182)
.+++....-|+-||...+++..+++..++..
T Consensus 5 ~~~i~~~~GlHaRPA~~lv~~a~~f~~~i~l 35 (82)
T PRK13782 5 RVEVSLKTGLQARPAALFVQEANRFHADIFI 35 (82)
T ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCEEEE
Confidence 4556666666777777777777777777754
No 78
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=26.57 E-value=2.1e+02 Score=25.28 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHcCCeEEEeeeCCE-EEEEcCCCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEEecCCCCCCCCCh
Q 030153 83 LSDTKAMLSILRSLGAKIEFNERNKE-ILVNTDGVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPV 161 (182)
Q Consensus 83 s~Dv~~~l~~L~~lGa~I~~~~~~~~-l~I~~~~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~~~G~~~l~~Rpi 161 (182)
.+++.-+.++|++..-.+. ..... +-|-|+++++.. .. |..|..- -++|+.| .++..+|..+..++-=
T Consensus 53 ~eEi~G~~~am~~~~~~~~--~p~~~~vDi~GTGGDg~~-T~----NiSt~aA---~v~A~~G-v~VaKHGnrs~sSksG 121 (338)
T COG0547 53 PEEIAGFAEAMREHAPKLP--VPAADPVDIVGTGGDGAN-TI----NISTAAA---IVAAAAG-VPVAKHGNRSVSSKSG 121 (338)
T ss_pred HHHHHHHHHHHHHhcccCC--CCCCCCCCeecCCCCCCC-cc----cchHHHH---HHHHhCC-CcEEeECCCCCCCCCc
Confidence 4777779999998765555 33221 445565554332 11 1122221 2344445 6788999888886644
Q ss_pred HHHHHHHHHCCCEEEE
Q 030153 162 DLYVRGLRALGAAVEI 177 (182)
Q Consensus 162 ~~l~~~L~~lGa~v~~ 177 (182)
. .+.|+.||++++.
T Consensus 122 s--aDvleaLGv~l~~ 135 (338)
T COG0547 122 S--ADVLEALGVNLEL 135 (338)
T ss_pred H--HHHHHHcCCCCCC
Confidence 4 8899999998864
No 79
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=24.61 E-value=4.3e+02 Score=22.32 Aligned_cols=105 Identities=21% Similarity=0.124 Sum_probs=59.7
Q ss_pred cCCHHHHHHHHHHhcccCCcEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCCCCChhhhhhhhhHH
Q 030153 54 SGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKAMLSILRSLGAKIEFNERNKEILVNTDGVGRVEPCLEEMRKIRGGF 133 (182)
Q Consensus 54 pgsKs~a~~~laAA~La~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~~~~~~~~~~~~~~~sgts~ 133 (182)
|||+.... +-+..+|.+-++.+.+-+- ++++..++. -.++ .+.+...... ...+.+.. -
T Consensus 13 PGdp~LLT-lka~~~L~~ADvvlyD~LV-~~~il~~~~----~~a~--------~i~vGkr~g~-~~~~q~eI------n 71 (244)
T COG0007 13 PGDPGLLT-LRALRALQEADVVLYDRLV-PEEVLALAR----RDAE--------RIYVGKRPGG-HSKPQDEI------N 71 (244)
T ss_pred CCChhhhh-HHHHHHHhhCCEEEEcCcC-CHHHHHhhc----cCCE--------EEEecCcCCC-CCCCHHHH------H
Confidence 88886444 3333448788899998887 777544433 1121 2223222221 22223211 1
Q ss_pred HHHHHHhhhhCCeEEEecCCCCCCCCChHHHHHHHHHCCCEEEEcCc
Q 030153 134 FVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEISYV 180 (182)
Q Consensus 134 ~~l~~lla~~~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~~~~ 180 (182)
.++.-.+ .-|+..+++.|++.+-=-|-..-++.|.+.|+.++.-.|
T Consensus 72 ~~lv~~a-~~G~~VVRLKgGDP~iFGRggEE~~~l~~~gI~~eVVPG 117 (244)
T COG0007 72 ALLVELA-REGKRVVRLKGGDPYIFGRGGEEIEALAEAGIEFEVVPG 117 (244)
T ss_pred HHHHHHH-hcCCeEEEecCCCCCeecCcHHHHHHHHHcCCceEEeCc
Confidence 2232333 347777888887777544445558889999999987544
No 80
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=24.49 E-value=2.4e+02 Score=25.14 Aligned_cols=52 Identities=25% Similarity=0.397 Sum_probs=32.4
Q ss_pred EEEccCCHH--HHH-HHHHHhcccCCcEEEe-----eCCCC--ChHHH-HHHHHHHHcCCeEE
Q 030153 50 HVPISGSKN--SSL-CLLAATLLCSNSCLLH-----NVPTG--LSDTK-AMLSILRSLGAKIE 101 (182)
Q Consensus 50 ~v~vpgsKs--~a~-~~laAA~La~g~~~I~-----n~~~~--s~Dv~-~~l~~L~~lGa~I~ 101 (182)
++.|...+| ..+ .+|-+++.++++++|+ +++.+ .|.++ .++.+|++||.+.+
T Consensus 87 ~~digTAGsi~LvlQtlLp~~~fa~~~~~i~v~GGTdv~~aP~vDyir~v~lp~L~k~G~~~~ 149 (341)
T COG0430 87 RVDIGTAGSITLVLQTLLPLLLFADGPSRITVTGGTDVPWAPPVDYIRRVTLPVLRKMGIECE 149 (341)
T ss_pred EEEecCCCceeeeHHHHHHHhhcCCCCeEEEEECccCCCCCCCcchhhhhHHHHHHhhccceE
Confidence 467774444 333 3555666788877764 33330 24554 48999999998776
No 81
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=23.87 E-value=77 Score=23.89 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=30.9
Q ss_pred CCeEEEecCCCCCCCCChHHHHHHHHHCCCEEEEcCcc
Q 030153 144 GEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEISYVF 181 (182)
Q Consensus 144 ~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~~~~~ 181 (182)
+++.....|+--|.++-+.+++++|++.|++|....++
T Consensus 53 ~~G~A~~~Gd~vll~~EV~pvi~aL~~~GI~vtAlHNH 90 (123)
T PF07485_consen 53 GDGKAMVMGDFVLLEDEVNPVISALRKNGIEVTALHNH 90 (123)
T ss_pred CCCcEEEeecEEecHHHHHHHHHHHHHCCceEEEEecc
Confidence 44566777877888899999999999999999875543
No 82
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=23.48 E-value=1.5e+02 Score=21.71 Aligned_cols=20 Identities=30% Similarity=0.307 Sum_probs=15.2
Q ss_pred CChHHHHHHHHHCCCEEEEc
Q 030153 159 RPVDLYVRGLRALGAAVEIS 178 (182)
Q Consensus 159 Rpi~~l~~~L~~lGa~v~~~ 178 (182)
+.++.+.+.|+++|+.++..
T Consensus 65 ~~~~~v~~~l~~lG~~~E~~ 84 (117)
T PF14085_consen 65 DDIEAVREELEALGCTVEGF 84 (117)
T ss_pred hhHHHHHHHHHHcCCeEEcc
Confidence 55778888888888888754
No 83
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond. The enzymes are conserved in eucaryotes, bacteria and archaea. The exact biological role of this enzyme is unknown, but it has been proposed that it is likely to function in cellular RNA metabolism and processing. RNA phosphate cyclase has been characterized in human (with at least three isozymes), and E. coli, and it seems to be taxonomically widespread. The crystal structure of RNA phospate cyclase shows that it consists of two domains. The larger domain contains three repeats of a fold originally identified in the bacterial translation initiation factor IF3.
Probab=23.02 E-value=5.2e+02 Score=22.70 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=35.3
Q ss_pred eEEcCCCccceE--EEcc--CCHHHHHH-HHHHhcccCCcEEEe-----eCCCCC---hHH-HHHHHHHHHcCCeEE
Q 030153 39 LTITGPTQLSGH--VPIS--GSKNSSLC-LLAATLLCSNSCLLH-----NVPTGL---SDT-KAMLSILRSLGAKIE 101 (182)
Q Consensus 39 i~I~~~~~l~g~--v~vp--gsKs~a~~-~laAA~La~g~~~I~-----n~~~~s---~Dv-~~~l~~L~~lGa~I~ 101 (182)
+...|+.-..|. +.+. ||-+..+. +|-.+++++++++|+ |++. + |.+ ..++-+|++||+.++
T Consensus 70 l~F~Pg~i~gG~~~~d~gtagSi~l~lq~lLp~~~fa~~~~~l~l~GgT~~~~-sPsvD~~~~v~lp~l~~~G~~~~ 145 (338)
T cd00295 70 FIFRPGNIIGGDVRFACGSAGGCGLFLEPILIACLFADGPSRLELSGGTDNNE-AIGADFIRRSLEPLLAKIFIHGD 145 (338)
T ss_pred EEEECCcccCCeEEEeCCCCcchHHHHHHHHHHHHhCCCCeEEEEEcccCCCC-CCCHHHHHHHHHHHHHHhCCccc
Confidence 445555433343 3443 55555443 445555688866653 4443 2 333 348899999998765
No 84
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=22.67 E-value=1.8e+02 Score=18.71 Aligned_cols=29 Identities=17% Similarity=0.091 Sum_probs=23.6
Q ss_pred CcEEEeeCCCCChHHHHHHHHHHHcCCeEE
Q 030153 72 NSCLLHNVPTGLSDTKAMLSILRSLGAKIE 101 (182)
Q Consensus 72 g~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~ 101 (182)
|+++|-..+. +.+.+.+.++|++.|+.++
T Consensus 1 ~~v~ly~~~~-C~~C~ka~~~L~~~gi~~~ 29 (73)
T cd03027 1 GRVTIYSRLG-CEDCTAVRLFLREKGLPYV 29 (73)
T ss_pred CEEEEEecCC-ChhHHHHHHHHHHCCCceE
Confidence 3566766776 7888889999999998877
No 85
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic. This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
Probab=22.21 E-value=2.5e+02 Score=20.23 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=20.1
Q ss_pred EEEeeCCCCChHHHHHHHHHHH-cCCeEEEeeeCCEEEEEcC
Q 030153 74 CLLHNVPTGLSDTKAMLSILRS-LGAKIEFNERNKEILVNTD 114 (182)
Q Consensus 74 ~~I~n~~~~s~Dv~~~l~~L~~-lGa~I~~~~~~~~l~I~~~ 114 (182)
+.|+|++....|.+.+++.|++ +|+--+ ..++.+.|.|.
T Consensus 41 TvV~Gl~~~~~~l~~l~k~LKk~~gcGgt--vk~~~IeiQGD 80 (101)
T TIGR01158 41 TIIEGLDLSDIDLKELAKELKSKCGCGGT--VKDGVIEIQGD 80 (101)
T ss_pred EEEeCCcCchhhHHHHHHHHHHHhcCCee--EeCCEEEEeCc
Confidence 5556665312455555555554 444433 33456666664
No 86
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=21.38 E-value=1.4e+02 Score=21.43 Aligned_cols=41 Identities=22% Similarity=0.012 Sum_probs=26.4
Q ss_pred HHhhhhCCeEEEecCCCCCCCCChHHHHHHHHHCCCEEEEc
Q 030153 138 PLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEIS 178 (182)
Q Consensus 138 ~lla~~~~~~~~~~G~~~l~~Rpi~~l~~~L~~lGa~v~~~ 178 (182)
.++....+..+.+.|..+-...+...+.+.|++.|+.++.-
T Consensus 46 ~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m 86 (110)
T PF04430_consen 46 ELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVM 86 (110)
T ss_dssp HHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE
T ss_pred HHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEE
Confidence 44544334456666644446677788999999999999863
No 87
>cd01516 FBPase_glpX Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core structure around the active site is well preserved. In E. coli, FBPase II is part of the glp regulon, which mediates growth on glycerol or sn-glycerol 3-phosphate as the sole carbon source.
Probab=21.31 E-value=3.8e+02 Score=23.55 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=40.0
Q ss_pred hccceEEcCCCccceEEEccCCHHHHHHHHHHhcccCC--cEEEeeCCCCChHHHHHHHHHHHcCCeEEE
Q 030153 35 EAETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSN--SCLLHNVPTGLSDTKAMLSILRSLGAKIEF 102 (182)
Q Consensus 35 ~m~~i~I~~~~~l~g~v~vpgsKs~a~~~laAA~La~g--~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~ 102 (182)
-|+++.|.| ...|.|.+.-+...-++.++.| +-.. +.++--+.. -.. +.+++-+++.||+|..
T Consensus 118 YM~KiavGp--~~~g~idld~~~~~Nl~~vA~a-lgk~v~dltV~vLdR-pRH-~~lI~eiR~~Gari~L 182 (309)
T cd01516 118 YMEKIAVGP--GAKGVIDLDAPVAENLRAVAKA-LGKPVEDLTVVVLDR-PRH-AALIEEIREAGARIKL 182 (309)
T ss_pred ceeeeeECc--ccCCeecCCCCHHHHHHHHHHH-cCCChhHeEEEEEcC-chH-HHHHHHHHHcCCeEEE
Confidence 378888865 4678888888775555455543 5333 333333332 222 3588999999999984
No 88
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=21.15 E-value=1.5e+02 Score=27.22 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCCCCChhhhhhhhhHHHHHHHHhhhhC
Q 030153 84 SDTKAMLSILRSLGAKIEFNERNKEILVNTDGVGRVEPCLEEMRKIRGGFFVIGPLLARFG 144 (182)
Q Consensus 84 ~Dv~~~l~~L~~lGa~I~~~~~~~~l~I~~~~~~~~~~~~~~~~~sgts~~~l~~lla~~~ 144 (182)
+++..+..+|.+-|-.++|+ +-+..+|+.-...+.. +. ..+.+.|++|++|
T Consensus 54 ~E~~~lT~AMv~SGe~ld~~-~~~~~~vDKHStGGVg-dk--------~sL~l~PiVAA~G 104 (435)
T COG0213 54 DEIAALTMAMVDSGEVLDLS-DIPGPVVDKHSTGGVG-DK--------TSLILVPIVAAAG 104 (435)
T ss_pred HHHHHHHHHHHhcCCEEeec-cCCCceecccCCCCCC-cc--------cchhHHHHHHhcC
Confidence 66667888899999999964 2234555431111111 11 2366779999876
No 89
>PRK09479 glpX fructose 1,6-bisphosphatase II; Reviewed
Probab=20.73 E-value=3.9e+02 Score=23.57 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=39.7
Q ss_pred ccceEEcCCCccceEEEccCCHHHHHHHHHHhcccCC--cEEEeeCCCCChHHHHHHHHHHHcCCeEEE
Q 030153 36 AETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSN--SCLLHNVPTGLSDTKAMLSILRSLGAKIEF 102 (182)
Q Consensus 36 m~~i~I~~~~~l~g~v~vpgsKs~a~~~laAA~La~g--~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~ 102 (182)
|+++.|.| ...|.|.+.-+...-++.++.| +-.. +.++--+.. -.. +.+++-+++.||+|..
T Consensus 122 M~KiavGp--~~~g~vdl~~p~~eNl~~~A~a-lgk~v~dltV~vLdR-pRH-~~lI~eiR~~Gari~L 185 (319)
T PRK09479 122 MEKLAVGP--EAKGVVDLDAPVAENLRAVAKA-LGKDVSDLTVVVLDR-PRH-EELIAEIREAGARVKL 185 (319)
T ss_pred eeeeeeCc--ccCCeecCCCCHHHHHHHHHHH-cCCChhHeEEEEEcC-chH-HHHHHHHHHcCCeEEE
Confidence 78888865 5778888887775555555543 5332 333333333 222 3588999999999983
No 90
>PRK12388 fructose-1,6-bisphosphatase II-like protein; Reviewed
Probab=20.14 E-value=4.1e+02 Score=23.42 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=39.0
Q ss_pred ccceEEcCCCccceEEEccCCHHHHHHHHHHhcccCC--cEEEeeCCCCChHHHHHHHHHHHcCCeEEE
Q 030153 36 AETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSN--SCLLHNVPTGLSDTKAMLSILRSLGAKIEF 102 (182)
Q Consensus 36 m~~i~I~~~~~l~g~v~vpgsKs~a~~~laAA~La~g--~~~I~n~~~~s~Dv~~~l~~L~~lGa~I~~ 102 (182)
|+++.|.| ...|.|.+.-+...-++.++.| +-.. +.++--+.. -.. +.+++-+++.||+|..
T Consensus 119 M~KiavGp--~~~G~idl~~p~~~Nl~~vA~a-lgk~v~dltV~vLdR-pRH-~~lI~eiR~~GarI~L 182 (321)
T PRK12388 119 MKKLVVNR--LAAGAIDLSLPLADNLRNVARA-LGKPLDKLRMVTLDK-PRL-SAAIEEATQLGVKVFA 182 (321)
T ss_pred eeeeeECc--ccCCeecCCCCHHHHHHHHHHH-cCCChhHeEEEEEcC-chH-HHHHHHHHHcCCeEEE
Confidence 78888865 4688888877765555445443 5333 333333333 222 3488999999999984
No 91
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=20.10 E-value=3.6e+02 Score=25.47 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHcCCeEEEeeeC--------------CEEEEEcCCCCCCCCChhhhhhhhhHHHHHHHHhhhhCCeEEE
Q 030153 84 SDTKAMLSILRSLGAKIEFNERN--------------KEILVNTDGVGRVEPCLEEMRKIRGGFFVIGPLLARFGEAVVG 149 (182)
Q Consensus 84 ~Dv~~~l~~L~~lGa~I~~~~~~--------------~~l~I~~~~~~~~~~~~~~~~~sgts~~~l~~lla~~~~~~~~ 149 (182)
+.....++.|+++|++|-+|.-+ +.++|++.-......+. .....+..+.-++..++ ..+.
T Consensus 678 ~~~~~~l~~l~~~G~~i~ld~fg~~~~~~~~l~~l~~d~iKid~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-i~vi 752 (799)
T PRK11359 678 TEIFKRIQILRDMGVGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEK----RILALLEAITSIGQSLN-LTVV 752 (799)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCchhhHHHHhhCCCCEEEECHHHHhhcccCh----hHHHHHHHHHHHHHHCC-CeEE
Confidence 44567899999999999864433 13344432111010010 01112233333343344 4577
Q ss_pred ecCCCCCCCCChHHHHHHHHHCCCEEE
Q 030153 150 LPGGCDIGERPVDLYVRGLRALGAAVE 176 (182)
Q Consensus 150 ~~G~~~l~~Rpi~~l~~~L~~lGa~v~ 176 (182)
..|.+. ....+.|+++|++.-
T Consensus 753 a~gVe~------~~~~~~l~~~g~~~~ 773 (799)
T PRK11359 753 AEGVET------KEQFEMLRKIHCRVI 773 (799)
T ss_pred EEcCCC------HHHHHHHHhcCCCEE
Confidence 777664 456888999999864
No 92
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation. This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
Probab=20.03 E-value=3e+02 Score=18.78 Aligned_cols=41 Identities=12% Similarity=0.125 Sum_probs=25.1
Q ss_pred cEEEeeCCCCChHHHHHHHHHHH-cCCeEEEeeeCCEEEEEcCC
Q 030153 73 SCLLHNVPTGLSDTKAMLSILRS-LGAKIEFNERNKEILVNTDG 115 (182)
Q Consensus 73 ~~~I~n~~~~s~Dv~~~l~~L~~-lGa~I~~~~~~~~l~I~~~~ 115 (182)
.+.|.+++....|.+.+.+.|++ +|+.-+ ..++.+.+.|..
T Consensus 15 VT~I~Gl~~~~~dlk~l~k~lKk~~~cggt--v~~~~I~lQGD~ 56 (77)
T cd00474 15 VTTVQGLDLEYADLKKLAKELKKKCACGGT--VKDEVIELQGDQ 56 (77)
T ss_pred EEEEECCCCchHhHHHHHHHHHHHcCCCcE--EecCEEEEeCcH
Confidence 46778887622377777777755 654433 224677787753
Done!