BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030154
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K8D|A Chain A, Crystal Structure Of The Non-Classical Mhc Class Ib Qa-2
Complexed With A Self Peptide
Length = 274
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 19/139 (13%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP ER + I K Q S S+R+A+ Y + + G +Y D+
Sbjct: 55 EGPEYWERETQIAKGHEQ-SFRGSLRTAQSY-YNQSKGGSHTLQWMYGCDM--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQV----WHRRTFNLLDFLQLE 138
G + R+LRG+ G D++ + ED+ + +Q+ W + D LE
Sbjct: 104 --GSDGRLLRGYLQFAYEGRDYIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLE 161
Query: 139 LTCKALLQVFMHFLLEKMI 157
TC L+ ++ E ++
Sbjct: 162 GTCMQSLRRYLELGKETLL 180
>pdb|3KWW|A Chain A, Crystal Structure Of The 'restriction Triad' Mutant Of Hla
B Beta-2-Microglobulin And Ebv Peptide
pdb|3KXF|A Chain A, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|C Chain C, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|K Chain K, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|I Chain I, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
Length = 276
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R ++I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTAIFKANTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1A9B|A Chain A, Decamer-Like Conformation Of A Nano-Peptide Bound To Hla-
B3501 Due To Nonstandard Positioning Of The C-Terminus
pdb|1A9B|D Chain D, Decamer-Like Conformation Of A Nano-Peptide Bound To Hla-
B3501 Due To Nonstandard Positioning Of The C-Terminus
pdb|1A9E|A Chain A, Decamer-Like Conformation Of A Nano-Peptide Bound To Hla-
B3501 Due To Nonstandard Positioning Of The C-Terminus
Length = 277
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|3VFM|A Chain A, Crystal Structure Of Hla B3508 Lpep155a, Hla Mutant Ala155
Length = 276
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1CG9|A Chain A, Complex Recognition Of The Supertypic Bw6-Determinant On
Hla-B And-C Molecules By The Monoclonal Antibody Sfr8-B6
Length = 277
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1XH3|A Chain A, Conformational Restraints And Flexibility Of 14-Meric
Peptides In Complex With Hla-B3501
pdb|1ZHK|A Chain A, Crystal Structure Of Hla-B3501 Presenting 13-Mer Ebv
Antigen Lpeplpqgqltay
pdb|1ZSD|A Chain A, Crystal Structure Of Hla-B3501 Presenting An 11-Mer Ebv
Antigen Eplpqgqltay
pdb|2AXG|A Chain A, The Immunogenicity Of A Viral Cytotoxic T Cell Epitope Is
Controlled By Its Mhc-Bound Conformation
pdb|2H6P|A Chain A, Crystal Structure Of Hla-B3501 Presenting The Human
Cytochrome P450 Derived Peptide, Kpivvlhgy
pdb|2CIK|A Chain A, Insights Into Crossreactivity In Human Allorecognition:
The Structure Of Hla-B35011 Presenting An Epitope
Derived From Cytochrome P450.
pdb|2FYY|A Chain A, The Role Of T Cell Receptor Alpha Genes In Directing Human
Mhc Restriction
pdb|2NX5|A Chain A, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|F Chain F, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|K Chain K, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|Q Chain Q, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|3MV7|A Chain A, Crystal Structure Of The Tk3 Tcr In Complex With
Hla-B3501HPVG
pdb|3MV8|A Chain A, Crystal Structure Of The Tk3-Gln55his Tcr In Complex With
Hla- B3501HPVG
pdb|3MV9|A Chain A, Crystal Structure Of The Tk3-Gln55ala Tcr In Complex With
Hla- B3501HPVG
pdb|3LKN|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1918 Strain
pdb|3LKO|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1934 Strain
pdb|3LKP|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1972 Strain
pdb|3LKQ|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1977 Strain
pdb|3LKR|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 2009 H1n1 Swine Origin Strain
pdb|3LKS|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1980 Strain
Length = 276
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|3VFO|A Chain A, Crystal Structure Of Hla B3508 Lpep157a, Hla Mutant Ala157
Length = 276
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|3VFN|A Chain A, Crystal Structure Of Hla B3508lpep151a, Hla Mutant Ala151
Length = 276
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1A1N|A Chain A, Mhc Class I Molecule B3501 Complexed With Peptide Vplrpmty
From The Nef Protein (75-82) Of Hiv1
Length = 276
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1ZHL|A Chain A, Crystal Structure Of Hla-B3508 Presenting 13-Mer Ebv
Antigen Lpeplpqgqltay
pdb|2AK4|A Chain A, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|F Chain F, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|K Chain K, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|Q Chain Q, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AXF|A Chain A, The Immunogenicity Of A Viral Cytotoxic T Cell Epitope Is
Controlled By Its Mhc-Bound Conformation
pdb|2FZ3|A Chain A, The Role Of T Cell Receptor Alpha Genes In Directing Human
Mhc Restriction
pdb|2NW3|A Chain A, Crystal Structure Of Hla-B3508 Presenting Ebv Peptide
Eplpqgqltay At 1.7a
pdb|3BW9|A Chain A, Crystal Structure Of Hla B3508 In Complex With A Hcmv 12-
Mer Peptide From The Pp65 Protein
pdb|3BWA|A Chain A, Crystal Structure Of Hla B3508 In Complex With A Hcmv 8-
Mer Peptide From The Pp65 Protein
pdb|3VFS|A Chain A, Crystal Structure Of Hla B3508lpep-P5ala , Peptide Mutant
P5-Ala
pdb|3VFT|A Chain A, Crystal Structure Of Hla B3508lpep-P6ala, Peptide Mutant
P6-Ala
pdb|3VFU|A Chain A, Crystal Structure Of Hla B3508 Lpep-P7ala, Peptide Mutant
P7-Ala
pdb|3VFV|A Chain A, Crystal Structure Of Hla B3508 Lpep-P9ala, Peptide Mutant
P9-Ala
pdb|3VFW|A Chain A, Crystal Structure Of Hla B3508 Lpep-P10ala, Peptide Mutant
P10-Ala
pdb|3VFR|A Chain A, Crystal Structure Of Hla B3508lpep-P4ala, Peptide Mutant
P4-Ala
Length = 276
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1RE5|A Chain A, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|B Chain B, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|C Chain C, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|D Chain D, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
Length = 450
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 101 GLDWLPIREDVAEQLEIAYRSQVWHRRTFNLLDF 134
G +P+ E +AEQL++ Q WH + L++F
Sbjct: 203 GSKAMPVAEALAEQLKLTLPEQPWHTQRDRLVEF 236
>pdb|3VFP|A Chain A, Crystal Structure Of Hla B3508 Lpep158g, Hla Mutant Gly158
Length = 276
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|3LN5|A Chain A, Crystal Structure Of Hla-B4104 In Complex With A 11mer
Self-Peptide Derived From S-Methyl-5-Thioadenosine
Phosphorylase
Length = 274
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 19/131 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G +Y DL
Sbjct: 55 EGPEYWDRETQISKTNTQ-TYRESLRNLRGYYNQSE-AGSHTLQSMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQV----WHRRTFNLLDFLQLE 138
G + R+LRGH G D++ + ED+ +Q+ W D LE
Sbjct: 104 --GPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARVAEQDRAYLE 161
Query: 139 LTCKALLQVFM 149
TC L+ ++
Sbjct: 162 GTCVEWLRRYL 172
>pdb|1A1M|A Chain A, Mhc Class I Molecule B5301 Complexed With Peptide
Tpydinqml From Gag Protein Of Hiv2
Length = 278
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + E++R A Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRENLRIALRYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1XR8|A Chain A, Crystal Structures Of Hla-B1501 In Complex With Peptides
From Human Ubch6 And Epstein-Barr Virus Ebna-3
pdb|1XR9|A Chain A, Crystal Structures Of Hla-B1501 In Complex With Peptides
From Human Ubch6 And Epstein-Barr Virus Ebna-3
pdb|3C9N|A Chain A, Crystal Structure Of A Sars Corona Virus Derived Peptide
Bound To The Human Major Histocompatibility Complex
Class I Molecule Hla-B1501
Length = 276
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G +Y D+
Sbjct: 55 EGPEYWDRETQISKTNTQ-TYRESLRNLRGYYNQSE-AGSHTLQRMYGCDV--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1A1O|A Chain A, Mhc Class I Molecule B5301 Complexed With Peptide Ls6
(Kpivqydnf) From The Malaria Parasite P. Falciparum
Length = 276
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + E++R A Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRENLRIALRYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|3IIR|A Chain A, Crystal Structure Of Miraculin Like Protein From Seeds Of
Mu Koenigii
pdb|3IIR|B Chain B, Crystal Structure Of Miraculin Like Protein From Seeds Of
Mu Koenigii
Length = 190
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 80 PVYWNGDNRRVLRGHWFARKGGLDWLP 106
P W DN RG WF GG++ P
Sbjct: 88 PTVWRVDNYDPSRGKWFITTGGVEGNP 114
>pdb|3IL2|A Chain A, Crystal Structure Of A Rex-Family Repressor R90d MutantDNA
COMPLEX From Thermus Aquaticus
pdb|3IL2|B Chain B, Crystal Structure Of A Rex-Family Repressor R90d MutantDNA
COMPLEX From Thermus Aquaticus
Length = 207
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 5 LLQREEELLSNWWKEYAECSEGPRERASSIKKSDVQASLTESVRSAELYEVEEERVGVPV 64
+L+RE + +++ C G + S++ ES ++V+ E+VG PV
Sbjct: 67 VLKRELRHILGLNRKWGLCIVGXGDLGSALAD---YPGFGESFELRGFFDVDPEKVGRPV 123
Query: 65 KGGLYE-VDLV 74
+GG+ E VDL+
Sbjct: 124 RGGVIEHVDLL 134
>pdb|2JPD|A Chain A, Solution Structure Of The Ercc1 Central Domain
Length = 135
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 133 DFLQLELTCKALLQVFMHFLLEKMIHGRLGSMLMHLVFLASLVSVEME 180
D++ + TC L + H L IHGRL S+ + LV V+++
Sbjct: 35 DYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVK 82
>pdb|2JNW|A Chain A, Solution Structure Of A Ercc1-Xpa Heterodimer
Length = 133
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 133 DFLQLELTCKALLQVFMHFLLEKMIHGRLGSMLMHLVFLASLVSVEME 180
D++ + TC L + H L IHGRL S+ + LV V+++
Sbjct: 48 DYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVK 95
>pdb|3IKV|A Chain A, Crystal Structure Of A Rex-Family Repressor R90d Mutant
From Aquaticus
pdb|3IKV|B Chain B, Crystal Structure Of A Rex-Family Repressor R90d Mutant
From Aquaticus
Length = 207
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 5 LLQREEELLSNWWKEYAECSEGPRERASSIKKSDVQASLTESVRSAELYEVEEERVGVPV 64
+L+RE + +++ C G + S++ ES ++V+ E+VG PV
Sbjct: 67 VLKRELRHILGLNRKWGLCIVGMGDLGSALAD---YPGFGESFELRGFFDVDPEKVGRPV 123
Query: 65 KGGLYE-VDLV 74
+GG+ E VDL+
Sbjct: 124 RGGVIEHVDLL 134
>pdb|2A1I|A Chain A, Crystal Structure Of The Central Domain Of Human Ercc1
Length = 146
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 133 DFLQLELTCKALLQVFMHFLLEKMIHGRLGSMLMHLVFLASLVSVEME 180
D++ + TC L + H L IHGRL S+ + LV V+++
Sbjct: 48 DYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVK 95
>pdb|3LN4|A Chain A, Crystal Structure Of Hla-B4103 In Complex With A 16mer
Self-Peptide Derived From Heterogeneous Nuclear
Ribonucleoproteins C1C2
Length = 274
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 19/131 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G +Y D+
Sbjct: 55 EGPEYWDRETQISKTNTQ-TYRESLRNLRGYYNQSE-AGSHTLQRMYGCDV--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQV----WHRRTFNLLDFLQLE 138
G + R+LRGH G D++ + ED+ +Q+ W D LE
Sbjct: 104 --GPDGRLLRGHNQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARVAEQDRAYLE 161
Query: 139 LTCKALLQVFM 149
TC L+ ++
Sbjct: 162 GTCVEWLRRYL 172
>pdb|1N2R|A Chain A, A Natural Selected Dimorphism In Hla B44 Alters Self,
Peptide Reportoire And T Cell Recognition.
pdb|1SYS|A Chain A, Crystal Structure Of Hla, B4403, And Peptide Eeptvikky
pdb|3DX7|A Chain A, Crystal Structure Of Hla-B4403 Presenting 10mer Ebv
Antigen
pdb|3KPN|A Chain A, Crystal Structure Of Hla B4403 In Complex With Eeylqafty A
Self Peptide From The Abcd3 Protein
pdb|3KPO|A Chain A, Crystal Structure Of Hla B*4403 In Complex With Eeylkawtf,
A Mimotope
Length = 276
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + E++R+A Y + E G + +Y D+
Sbjct: 55 EGPEYWDRETQISKTNTQ-TYRENLRTALRYYNQSE-AGSHIIQRMYGCDV--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRG+ G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGYDQDAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|3IKT|A Chain A, Crystal Structure Of A Rex-Family RepressorDNANAD+ COMPLEX
Thermus Aquaticus
pdb|3IKT|B Chain B, Crystal Structure Of A Rex-Family RepressorDNANAD+ COMPLEX
Thermus Aquaticus
Length = 207
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 42 SLTESVRSAELYEVEEERVGVPVKGGLYE-VDLV 74
ES ++V+ E+VG PV+GG+ E VDL+
Sbjct: 101 GFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLL 134
>pdb|2DT5|A Chain A, Crystal Structure Of Ttha1657 (At-Rich Dna-Binding
Protein) From Thermus Thermophilus Hb8
pdb|2DT5|B Chain B, Crystal Structure Of Ttha1657 (At-Rich Dna-Binding
Protein) From Thermus Thermophilus Hb8
Length = 211
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 42 SLTESVRSAELYEVEEERVGVPVKGGLYE-VDLV 74
ES ++V+ E+VG PV+GG+ E VDL+
Sbjct: 100 GFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLL 133
>pdb|3W39|A Chain A, Crystal Structure Of Hla-b*5201 In Complexed With Hiv
Immunodominant Epitope (taftipsi)
pdb|3W39|D Chain D, Crystal Structure Of Hla-b*5201 In Complexed With Hiv
Immunodominant Epitope (taftipsi)
Length = 277
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + E++R A Y + E G +Y D+
Sbjct: 56 EGPEYWDRETQISKTNTQ-TYRENLRIALRYYNQSE-AGSHTWQTMYGCDV--------- 104
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH G D++ + ED++ +Q+ R+
Sbjct: 105 --GPDGRLLRGHNQYAYDGKDYIALNEDLSSWTAADTAAQITQRK 147
>pdb|3CDG|A Chain A, Human Cd94NKG2A IN COMPLEX WITH HLA-E
pdb|3CDG|C Chain C, Human Cd94NKG2A IN COMPLEX WITH HLA-E
pdb|3BZE|A Chain A, The Human Non-Classical Major Histocompatibility Complex
Molecule Hla- E
pdb|3BZE|C Chain C, The Human Non-Classical Major Histocompatibility Complex
Molecule Hla- E
pdb|3BZE|E Chain E, The Human Non-Classical Major Histocompatibility Complex
Molecule Hla- E
pdb|3BZE|G Chain G, The Human Non-Classical Major Histocompatibility Complex
Molecule Hla- E
pdb|3CII|A Chain A, Structure Of Nkg2aCD94 BOUND TO HLA-E
pdb|3CII|D Chain D, Structure Of Nkg2aCD94 BOUND TO HLA-E
Length = 273
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 85 GDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRRTFNLLDF----LQLELT 140
G +RR LRG+ G D+L + ED+ + +Q+ +++ + + LE T
Sbjct: 103 GPDRRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDT 162
Query: 141 CKALLQVFMHFLLEKMIH 158
C L ++ E ++H
Sbjct: 163 CVEWLHKYLEKGKETLLH 180
>pdb|1MHE|A Chain A, The Human Non-Classical Major Histocompatibility Complex
Molecule Hla-E
pdb|1MHE|C Chain C, The Human Non-Classical Major Histocompatibility Complex
Molecule Hla-E
Length = 274
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 85 GDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRRTFNLLDF----LQLELT 140
G +RR LRG+ G D+L + ED+ + +Q+ +++ + + LE T
Sbjct: 104 GPDRRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDT 163
Query: 141 CKALLQVFMHFLLEKMIH 158
C L ++ E ++H
Sbjct: 164 CVEWLHKYLEKGKETLLH 181
>pdb|2ESV|A Chain A, Structure Of The Hla-E-VmaprtlilKK50.4 TCR COMPLEX
Length = 275
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 85 GDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRRTFNLLDF----LQLELT 140
G +RR LRG+ G D+L + ED+ + +Q+ +++ + + LE T
Sbjct: 103 GPDRRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDT 162
Query: 141 CKALLQVFMHFLLEKMIH 158
C L ++ E ++H
Sbjct: 163 CVEWLHKYLEKGKETLLH 180
>pdb|3BZF|A Chain A, The Human Non-Classical Major Histocompatibility Complex
Molecule Hla-E
pdb|3BZF|C Chain C, The Human Non-Classical Major Histocompatibility Complex
Molecule Hla-E
pdb|3AM8|A Chain A, Crystal Structure Of A Human Major Histocompatibilty
Complex
pdb|3AM8|B Chain B, Crystal Structure Of A Human Major Histocompatibilty
Complex
Length = 276
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 85 GDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRRTFNLLDF----LQLELT 140
G +RR LRG+ G D+L + ED+ + +Q+ +++ + + LE T
Sbjct: 104 GPDRRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDT 163
Query: 141 CKALLQVFMHFLLEKMIH 158
C L ++ E ++H
Sbjct: 164 CVEWLHKYLEKGKETLLH 181
>pdb|1M6O|A Chain A, Crystal Structure Of Hla B4402 In Complex With Hla Dpa0201
Peptide
pdb|3DX6|A Chain A, Crystal Structure Of B4402 Presenting A 10mer Ebv Epitope
pdb|3KPL|A Chain A, Crystal Structure Of Hla B4402 In Complex With Eeylqafty A
Self Peptide From The Abcd3 Protein
pdb|3KPM|A Chain A, Crystal Structure Of Hla B4402 In Complex With Eeylkawtf,
A Mimotope
pdb|3L3D|A Chain A, Crystal Structure Of Hla-B4402 In Complex With The F3a
Mutant Of A Self-Peptide Derived From Dpa0201
pdb|3L3G|A Chain A, Crystal Structure Of Hla-B4402 In Complex With The R5a
Mutant Of A Self-Peptide Derived From Dpa0201
pdb|3L3I|A Chain A, Crystal Structure Of Hla-B4402 In Complex With The F7a
Mutant Of A Self-Peptide Derived From Dpa0201
pdb|3L3J|A Chain A, Crystal Structure Of Hla-B4402 In Complex With The F3aR5A
DOUBLE Mutant Of A Self-Peptide Derived From Dpa0201
pdb|3L3K|A Chain A, Crystal Structure Of Hla-b*4402 In Complex With The
R5a/f7a Double Mutant Of A Self-peptide Derived From
Dpa*0201
Length = 276
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + E++R+A Y + E G + +Y D+
Sbjct: 55 EGPEYWDRETQISKTNTQ-TYRENLRTALRYYNQSE-AGSHIIQRMYGCDV--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRG+ G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGYDQDAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1XCB|A Chain A, X-Ray Structure Of A Rex-Family RepressorNADH COMPLEX FROM
Thermus Aquaticus
pdb|1XCB|B Chain B, X-Ray Structure Of A Rex-Family RepressorNADH COMPLEX FROM
Thermus Aquaticus
pdb|1XCB|C Chain C, X-Ray Structure Of A Rex-Family RepressorNADH COMPLEX FROM
Thermus Aquaticus
pdb|1XCB|D Chain D, X-Ray Structure Of A Rex-Family RepressorNADH COMPLEX FROM
Thermus Aquaticus
pdb|1XCB|E Chain E, X-Ray Structure Of A Rex-Family RepressorNADH COMPLEX FROM
Thermus Aquaticus
pdb|1XCB|F Chain F, X-Ray Structure Of A Rex-Family RepressorNADH COMPLEX FROM
Thermus Aquaticus
pdb|1XCB|G Chain G, X-Ray Structure Of A Rex-Family RepressorNADH COMPLEX FROM
Thermus Aquaticus
Length = 211
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 42 SLTESVRSAELYEVEEERVGVPVKGGLYE-VDLV 74
ES ++V+ E+VG PV+GG+ E VDL+
Sbjct: 100 GFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLL 133
>pdb|1SYV|A Chain A, Hla-B4405 Complexed To The Dominant Self Ligand Eefgraygf
pdb|3DX8|A Chain A, Crystal Structure Of B4405 Presenting A 10mer Ebv Epitope
pdb|3DXA|A Chain A, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
pdb|3DXA|F Chain F, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
pdb|3DXA|K Chain K, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
pdb|3KPP|A Chain A, Crystal Structure Of Hla B4405 In Complex With Eeylqafty A
Self Peptide From The Abcd3 Protein
pdb|3KPQ|A Chain A, Crystal Structure Of Hla B*4405 In Complex With Eeylkawtf,
A Mimotope
pdb|3KPR|A Chain A, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylkawtf A Mimotope
pdb|3KPR|F Chain F, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylkawtf A Mimotope
pdb|3KPS|A Chain A, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylqafty A Self Peptide From The Abcd3
Protein
Length = 276
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + E++R+A Y + E G + +Y D+
Sbjct: 55 EGPEYWDRETQISKTNTQ-TYRENLRTALRYYNQSE-AGSHIIQRMYGCDV--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRG+ G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGYDQYAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,148,516
Number of Sequences: 62578
Number of extensions: 197088
Number of successful extensions: 525
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 511
Number of HSP's gapped (non-prelim): 41
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)