Query 030154
Match_columns 182
No_of_seqs 130 out of 190
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 09:22:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2308 Phosphatidic acid-pref 99.9 2.3E-28 5E-33 234.9 5.6 170 3-179 90-305 (741)
2 PF02825 WWE: WWE domain; Int 96.8 0.0014 3.1E-08 45.1 3.3 51 93-145 8-58 (72)
3 smart00678 WWE Domain in Delte 96.5 0.0066 1.4E-07 42.4 5.1 49 94-144 2-50 (73)
4 PF02825 WWE: WWE domain; Int 59.2 18 0.00039 24.6 3.8 33 59-92 40-72 (72)
5 KOG2308 Phosphatidic acid-pref 48.5 7.5 0.00016 39.4 0.7 56 62-120 75-142 (741)
6 COG3816 Uncharacterized protei 43.9 15 0.00032 31.8 1.7 22 78-99 31-59 (205)
7 COG5111 RPC34 DNA-directed RNA 25.9 93 0.002 28.4 3.8 43 71-119 137-180 (301)
8 PF08635 ox_reductase_C: Putat 25.0 96 0.0021 25.8 3.5 17 14-32 37-53 (142)
9 PF06884 DUF1264: Protein of u 24.5 74 0.0016 27.1 2.8 60 81-155 75-140 (171)
10 PF15651 Tox-SGS: Salivary gla 21.6 54 0.0012 25.8 1.3 29 77-109 44-72 (100)
11 PF08043 Xin: Xin repeat; Int 21.2 73 0.0016 17.6 1.4 15 89-108 2-16 (16)
No 1
>KOG2308 consensus Phosphatidic acid-preferring phospholipase A1, contains DDHD domain [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.3e-28 Score=234.93 Aligned_cols=170 Identities=31% Similarity=0.450 Sum_probs=145.6
Q ss_pred hhHHhhHHHHHHHHHHHhhhhcCCCCCCcCCCcccchhhhhccccccchhhhccC---ceeeEEecCceeEEecCCeeee
Q 030154 3 EHLLQREEELLSNWWKEYAECSEGPRERASSIKKSDVQASLTESVRSAELYEVEE---ERVGVPVKGGLYEVDLVRRHCF 79 (182)
Q Consensus 3 ~~~~~r~~~l~~~~w~e~ae~s~g~~~~~~~~~~~~~~~~~~~~s~~~~l~~~d~---e~~~V~V~ggLydVdL~~R~l~ 79 (182)
++|+.|..+....||++|+.|..++..+..+..+....-+ +.++++.|++..+ +..+|+|+||+|+||+.+|+|.
T Consensus 90 ~~~~~~~~~~p~~~~r~~s~~~~~~~~~~~~~~~~~~~p~--~~~ds~~le~~~~~~~e~~~v~v~gG~Y~Vd~~~r~~~ 167 (741)
T KOG2308|consen 90 ASFLPRDSEAPEYWVRQYSGVNPHEFYRLTSEYKSTWTPS--EHSDSDDLEEGENDDQESPPVVVEGGLYEVDKENRKCS 167 (741)
T ss_pred cccccccccCcccccccccCCCCChhhhcccccccccccc--ccccccccccccccCCccCceeecCCeeeeeeeccccc
Confidence 5789999999999999999999999888776666555222 2368888887766 8999999999999999999999
Q ss_pred eeecCCCCcceEeeeeeeeCCCCceeeCChHHHHHHHHHHhhCc----cccccccCCccceeEEEEecCceeEEEeeeec
Q 030154 80 PVYWNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQV----WHRRTFNLLDFLQLELTCKALLQVFMHFLLEK 155 (182)
Q Consensus 80 PVYW~g~~~eVrRGTWFyk~g~s~~~Pl~E~lAe~LE~~Y~~~~----W~~~l~lp~Ge~~~~vv~h~p~~vivhf~~~~ 155 (182)
||||+|+.++||||+||+++ +++|+||+|++|++||.+|++.+ |+....+.++++ +.+||+. |++||++++
T Consensus 168 pvYW~~d~~ev~Rg~WF~~~-~~~~~P~~e~~s~qlE~~yl~~~~~~~~~~~~~~~~~s~---~s~~g~~-v~~~f~~~~ 242 (741)
T KOG2308|consen 168 PVYWSGDEKEVRRGTWFFDG-GSTLQPLEEELSEQLEAEYLNSFRTQELPENFTLFTASY---ISIHGKP-VVVSFKYTG 242 (741)
T ss_pred CCCCCCCcccceeeeeeecC-CCceeeccchhHHHHHHHHHHHhhhccccccccccccee---eeecCCc-eEEEeeecC
Confidence 99999999999999999986 78999999999999999999865 666666777764 9999998 999999987
Q ss_pred ---------------------------------------cccCccchhHHHHHHHhhhheeee
Q 030154 156 ---------------------------------------MIHGRLGSMLMHLVFLASLVSVEM 179 (182)
Q Consensus 156 ---------------------------------------~~~~~~~~~~~hl~~~~~~~~~~~ 179 (182)
++-...+..++||||++|...-.|
T Consensus 243 ~~~~w~a~~~~~~~~r~~~~g~~~~~~~~~~l~~~~~ee~~~~~k~~~v~hllf~vhgig~~~ 305 (741)
T KOG2308|consen 243 NDDTWGAVDDVSLKSRSGEAGLERPVVVGRGLRRFLEEENDLASKPVPVDHLLFVVHGIGQKM 305 (741)
T ss_pred CCccccccccccccccccccccccccccccccchhhhhhccccCCCccchheeeeeeccccCc
Confidence 355667888999999999876443
No 2
>PF02825 WWE: WWE domain; InterPro: IPR004170 The WWE domain is named after three of its conserved residues and is predicted to mediate specific protein-protein interactions in ubiquitin and ADP ribose conjugation systems. This domain is found as a tandem repeat at the N-terminal of Deltex, a cytosolic effector of Notch signalling thought to bind the N-terminal of the Notch receptor []. It is also found as an interaction module in protein ubiquination and ADP ribosylation proteins [].; PDB: 2A90_A 1UJR_A 2DK6_A 3V3L_B.
Probab=96.79 E-value=0.0014 Score=45.13 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=35.0
Q ss_pred eeeeeeCCCCceeeCChHHHHHHHHHHhhCccccccccCCccceeEEEEecCc
Q 030154 93 GHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRRTFNLLDFLQLELTCKALL 145 (182)
Q Consensus 93 GTWFyk~g~s~~~Pl~E~lAe~LE~~Y~~~~W~~~l~lp~Ge~~~~vv~h~p~ 145 (182)
..|++.++++.|.||+++.+..||++|+++.=.-.+...+..| +|.|.+=+
T Consensus 8 ~~W~w~~~~~~W~~Y~~~~~~~IE~a~~~~~~~~~~~~~~~~Y--~IDF~~M~ 58 (72)
T PF02825_consen 8 YVWQWEDDDGGWHPYDPEVSEIIEEAYQNGKKSCQLSIGGRPY--TIDFKSMT 58 (72)
T ss_dssp EEEEEESETSSEEE--HHHHHHHHHHHHTTTSEEEEEETTEEE--EEETTTTE
T ss_pred EEEEEECCCCcEEeCCcHHHHHHHHHHHcCCcEEEEEeCCcEE--EEEChhcE
Confidence 5788875577999999999999999999854232355555566 66665443
No 3
>smart00678 WWE Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis.
Probab=96.50 E-value=0.0066 Score=42.44 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=34.8
Q ss_pred eeeeeCCCCceeeCChHHHHHHHHHHhhCccccccccCCccceeEEEEecC
Q 030154 94 HWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRRTFNLLDFLQLELTCKAL 144 (182)
Q Consensus 94 TWFyk~g~s~~~Pl~E~lAe~LE~~Y~~~~W~~~l~lp~Ge~~~~vv~h~p 144 (182)
.|.+.++.++|.||+...+..||++|.++.=.-.+.+.+..| +|-|++-
T Consensus 2 ~W~w~~~~g~W~~Y~~~~~~~IE~ay~~~~~~~~v~~~g~~Y--~IdF~~m 50 (73)
T smart00678 2 VWEYEGRNGKWWPYDPRVSEDIEEAYAAGKKLCELSICGFPY--TIDFNAM 50 (73)
T ss_pred EEEEECCCCCeeeCChHHHHHHHHHHHcCCCeEEEEECCeEE--EEECcCC
Confidence 588876666899999999999999999743112333444555 6666553
No 4
>PF02825 WWE: WWE domain; InterPro: IPR004170 The WWE domain is named after three of its conserved residues and is predicted to mediate specific protein-protein interactions in ubiquitin and ADP ribose conjugation systems. This domain is found as a tandem repeat at the N-terminal of Deltex, a cytosolic effector of Notch signalling thought to bind the N-terminal of the Notch receptor []. It is also found as an interaction module in protein ubiquination and ADP ribosylation proteins [].; PDB: 2A90_A 1UJR_A 2DK6_A 3V3L_B.
Probab=59.17 E-value=18 Score=24.58 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=24.4
Q ss_pred eeeEEecCceeEEecCCeeeeeeecCCCCcceEe
Q 030154 59 RVGVPVKGGLYEVDLVRRHCFPVYWNGDNRRVLR 92 (182)
Q Consensus 59 ~~~V~V~ggLydVdL~~R~l~PVYW~g~~~eVrR 92 (182)
.+.|.+.|..|.||+.+|.....-.. ...+|+|
T Consensus 40 ~~~~~~~~~~Y~IDF~~M~Q~n~~t~-~~R~IrR 72 (72)
T PF02825_consen 40 SCQLSIGGRPYTIDFKSMTQINKDTG-TTRPIRR 72 (72)
T ss_dssp EEEEEETTEEEEEETTTTEEEESSSS--EEEEEE
T ss_pred EEEEEeCCcEEEEEChhcEEEeCCCC-CEeecCC
Confidence 55577779999999999988776554 4556665
No 5
>KOG2308 consensus Phosphatidic acid-preferring phospholipase A1, contains DDHD domain [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.54 E-value=7.5 Score=39.39 Aligned_cols=56 Identities=21% Similarity=0.162 Sum_probs=46.9
Q ss_pred EEec-CceeEEecCCeeeeeeecCCCCcceE-----------eeeeeeeCCCCceeeCChHHHHHHHHHHh
Q 030154 62 VPVK-GGLYEVDLVRRHCFPVYWNGDNRRVL-----------RGHWFARKGGLDWLPIREDVAEQLEIAYR 120 (182)
Q Consensus 62 V~V~-ggLydVdL~~R~l~PVYW~g~~~eVr-----------RGTWFyk~g~s~~~Pl~E~lAe~LE~~Y~ 120 (182)
..|. +.+.+|+.......|-+|..+.+.|| |++|+++. .|.|.+-..+..||+.|.
T Consensus 75 ~e~~~~~l~~~~~~~~~~~~~~~~~p~~~~r~~s~~~~~~~~~~~~~~~~---~~~p~~~~ds~~le~~~~ 142 (741)
T KOG2308|consen 75 EEVFRDVLSEVDTLHASFLPRDSEAPEYWVRQYSGVNPHEFYRLTSEYKS---TWTPSEHSDSDDLEEGEN 142 (741)
T ss_pred cccchhhcccccccccccccccccCcccccccccCCCCChhhhccccccc---cccccccccccccccccc
Confidence 3455 78999999999999999999888877 66666653 799999999999999998
No 6
>COG3816 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.90 E-value=15 Score=31.80 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=15.1
Q ss_pred eeee-ecCCC-----CcceEe-eeeeeeC
Q 030154 78 CFPV-YWNGD-----NRRVLR-GHWFARK 99 (182)
Q Consensus 78 l~PV-YW~g~-----~~eVrR-GTWFyk~ 99 (182)
+-|| -|+.| ..+|++ |||||-+
T Consensus 31 lpPV~rWNPpfCGdiDmeIr~DGtWFylG 59 (205)
T COG3816 31 LPPVERWNPPFCGDIDMEIRADGTWFYLG 59 (205)
T ss_pred CCchhhcCCCCccceeeEEecCceEEEec
Confidence 3444 36665 468887 9999975
No 7
>COG5111 RPC34 DNA-directed RNA polymerase III, subunit C34 [Transcription]
Probab=25.89 E-value=93 Score=28.39 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=31.5
Q ss_pred EecCCeeeeeeecCCCCcceEeeeeeeeCCCCceeeCC-hHHHHHHHHHH
Q 030154 71 VDLVRRHCFPVYWNGDNRRVLRGHWFARKGGLDWLPIR-EDVAEQLEIAY 119 (182)
Q Consensus 71 VdL~~R~l~PVYW~g~~~eVrRGTWFyk~g~s~~~Pl~-E~lAe~LE~~Y 119 (182)
|.-.+|+.+-.|=--|..++.-|+||.++. ++ |=++..||.-|
T Consensus 137 vKnptRKiYmLYdlvPS~eiTGGpWFtD~e------lDvEfi~~ll~ii~ 180 (301)
T COG5111 137 VKNPTRKIYMLYDLVPSEEITGGPWFTDNE------LDVEFIARLLEIIE 180 (301)
T ss_pred hcCCCceEEEEecccccccccCCCccccCc------ccHHHHHHHHHHHH
Confidence 555688899999888999999999999653 44 44455555433
No 8
>PF08635 ox_reductase_C: Putative oxidoreductase C terminal; InterPro: IPR013944 This is the C terminus of putative oxidoreductases.
Probab=25.04 E-value=96 Score=25.83 Aligned_cols=17 Identities=29% Similarity=0.739 Sum_probs=12.9
Q ss_pred HHHHHHhhhhcCCCCCCcC
Q 030154 14 SNWWKEYAECSEGPRERAS 32 (182)
Q Consensus 14 ~~~w~e~ae~s~g~~~~~~ 32 (182)
..||.. +.|-||---|+
T Consensus 37 ~~WW~k--s~sgGpiVEQa 53 (142)
T PF08635_consen 37 PFWWNK--SKSGGPIVEQA 53 (142)
T ss_pred chhhhh--cccCCCeeeeh
Confidence 358854 88899988876
No 9
>PF06884 DUF1264: Protein of unknown function (DUF1264); InterPro: IPR010686 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 200 residues long. Some family members are annotated as putative lipoproteins.
Probab=24.53 E-value=74 Score=27.12 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=39.5
Q ss_pred eecCCCCcceEeeeeeeeCCCCceeeCC--hHHHHHHHHHHhhC--ccc--cccccCCccceeEEEEecCceeEEEeeee
Q 030154 81 VYWNGDNRRVLRGHWFARKGGLDWLPIR--EDVAEQLEIAYRSQ--VWH--RRTFNLLDFLQLELTCKALLQVFMHFLLE 154 (182)
Q Consensus 81 VYW~g~~~eVrRGTWFyk~g~s~~~Pl~--E~lAe~LE~~Y~~~--~W~--~~l~lp~Ge~~~~vv~h~p~~vivhf~~~ 154 (182)
-||..-.+||..|.|+..+ +|=. ..+-+.|-.-|-+- .|+ +--.+|-|. |. +|+.|...
T Consensus 75 klWHsH~~EVkSG~L~~p~-----vP~~ae~~~m~~l~~tYGKt~HtWq~Drgd~LPlG~---------P~-LM~sft~d 139 (171)
T PF06884_consen 75 KLWHSHVYEVKSGMLVMPG-----VPEAAEKAEMEKLVKTYGKTWHTWQVDRGDKLPLGP---------PQ-LMMSFTRD 139 (171)
T ss_pred hccCCcceeeeeeeEecCC-----CCHHHHHHHHHHHHhhhCCeEEeccCCCCCCCCCCC---------Ce-eccccCCc
Confidence 4999999999999999964 4432 22223333445442 388 667888888 43 77777654
Q ss_pred c
Q 030154 155 K 155 (182)
Q Consensus 155 ~ 155 (182)
+
T Consensus 140 g 140 (171)
T PF06884_consen 140 G 140 (171)
T ss_pred c
Confidence 4
No 10
>PF15651 Tox-SGS: Salivary glad secreted protein domain toxin
Probab=21.60 E-value=54 Score=25.75 Aligned_cols=29 Identities=21% Similarity=0.510 Sum_probs=24.1
Q ss_pred eeeeeecCCCCcceEeeeeeeeCCCCceeeCCh
Q 030154 77 HCFPVYWNGDNRRVLRGHWFARKGGLDWLPIRE 109 (182)
Q Consensus 77 ~l~PVYW~g~~~eVrRGTWFyk~g~s~~~Pl~E 109 (182)
.|.||.|+|-+.-+=+|.++.= -|.|+..
T Consensus 44 ~C~Pi~w~G~pSv~C~Gq~ssf----iyTp~~~ 72 (100)
T PF15651_consen 44 SCMPIEWHGQPSVSCDGQQSSF----IYTPYET 72 (100)
T ss_pred CCcceeECCccceeeccceeee----EEccccC
Confidence 4999999999999999999863 4677754
No 11
>PF08043 Xin: Xin repeat; InterPro: IPR012510 The repeat has the consensus sequence GDV(K/Q/R)(T/S/G)X(R/K/T) WLFETXPLD. This repeat motif is typically found in the N terminus of the proteins, with a copy number between 2 and 28 repeats. Direct evidence for binding to and stabilising F-actin has been found in the human protein (Q702N9 from SWISSPROT) []. The homologues in mouse and chicken localise in the adherens junction complex of the intercalated disc in cardiac muscle and in the myotendon junction of skeletal muscle. mXin may co-localise with Vinculin which is known to attach the actin to the cytoplasmic membrane []. It has been shown that the amino-terminus of human xin (CMYA1) binds the EVH1 domain of Mena/VASP/EVL, and the carboxy-terminus binds the, for the filamin family unique, domain 20 of filamin C []. This confirms the proposed role of xin repeat containing proteins as F-actin-binding adapter proteins.; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0030054 cell junction
Probab=21.19 E-value=73 Score=17.57 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=11.5
Q ss_pred ceEeeeeeeeCCCCceeeCC
Q 030154 89 RVLRGHWFARKGGLDWLPIR 108 (182)
Q Consensus 89 eVrRGTWFyk~g~s~~~Pl~ 108 (182)
.|+.++|.... +|++
T Consensus 2 DV~~~~wlFEt-----qplD 16 (16)
T PF08043_consen 2 DVKTTRWLFET-----QPLD 16 (16)
T ss_pred CcceeEEEeec-----ccCC
Confidence 58899999865 6764
Done!