Query 030155
Match_columns 182
No_of_seqs 293 out of 2080
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 09:23:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030155.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030155hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0107 Alternative splicing f 99.9 1E-23 2.2E-28 156.0 16.9 77 5-82 8-87 (195)
2 KOG4207 Predicted splicing fac 99.9 1.2E-20 2.6E-25 143.1 13.7 78 3-81 9-94 (256)
3 PLN03134 glycine-rich RNA-bind 99.8 4.1E-20 8.9E-25 136.4 13.9 78 5-83 32-117 (144)
4 KOG0105 Alternative splicing f 99.7 1.6E-17 3.5E-22 124.3 9.9 76 5-81 4-84 (241)
5 TIGR01648 hnRNP-R-Q heterogene 99.7 1.1E-16 2.4E-21 140.4 14.6 77 6-83 232-310 (578)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 6.2E-17 1.3E-21 134.9 11.1 75 6-81 268-350 (352)
7 TIGR01659 sex-lethal sex-letha 99.7 8.4E-17 1.8E-21 134.2 10.0 76 3-79 103-186 (346)
8 PF00076 RRM_1: RNA recognitio 99.7 9.5E-17 2.1E-21 103.1 7.5 63 10-73 1-70 (70)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.9E-16 4.1E-21 132.0 9.8 75 6-81 2-84 (352)
10 TIGR01659 sex-lethal sex-letha 99.7 8.8E-16 1.9E-20 128.1 13.6 77 6-83 192-278 (346)
11 KOG0113 U1 small nuclear ribon 99.7 3.3E-15 7.1E-20 119.0 15.2 76 5-81 99-182 (335)
12 KOG0121 Nuclear cap-binding pr 99.7 1.7E-16 3.7E-21 112.2 6.3 73 5-78 34-114 (153)
13 KOG0130 RNA-binding protein RB 99.6 1E-15 2.2E-20 109.3 7.9 76 7-83 72-155 (170)
14 PLN03120 nucleic acid binding 99.6 1.4E-15 3.1E-20 120.6 9.5 71 7-79 4-79 (260)
15 KOG0109 RNA-binding protein LA 99.6 4.8E-16 1E-20 123.4 5.4 73 8-81 3-75 (346)
16 KOG0122 Translation initiation 99.6 3.6E-15 7.9E-20 115.9 9.0 75 5-80 187-269 (270)
17 KOG0125 Ataxin 2-binding prote 99.6 1.6E-15 3.4E-20 122.2 7.3 75 4-79 93-173 (376)
18 PLN03213 repressor of silencin 99.6 4.2E-15 9.1E-20 125.4 9.0 75 4-79 7-87 (759)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 1.1E-14 2.4E-19 126.5 10.6 76 5-81 273-352 (481)
20 KOG0117 Heterogeneous nuclear 99.6 3.8E-15 8.1E-20 124.1 7.2 78 6-84 258-335 (506)
21 TIGR01642 U2AF_lg U2 snRNP aux 99.6 1.5E-14 3.3E-19 126.1 10.9 74 6-80 294-375 (509)
22 PF14259 RRM_6: RNA recognitio 99.6 1.3E-14 2.9E-19 93.6 7.8 63 10-73 1-70 (70)
23 KOG0114 Predicted RNA-binding 99.6 1.8E-14 3.9E-19 98.5 8.4 76 3-79 14-94 (124)
24 KOG0148 Apoptosis-promoting RN 99.6 1.6E-14 3.5E-19 113.8 9.3 79 3-82 160-240 (321)
25 TIGR01645 half-pint poly-U bin 99.6 1.7E-14 3.6E-19 127.2 10.0 76 6-82 203-286 (612)
26 TIGR01622 SF-CC1 splicing fact 99.6 2E-14 4.3E-19 123.9 10.3 73 6-79 185-265 (457)
27 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 2.4E-14 5.2E-19 124.5 9.7 74 6-80 1-78 (481)
28 smart00362 RRM_2 RNA recogniti 99.5 4.1E-14 8.9E-19 90.0 8.1 66 9-75 1-72 (72)
29 PLN03121 nucleic acid binding 99.5 5.1E-14 1.1E-18 110.3 9.6 71 6-78 4-79 (243)
30 KOG0111 Cyclophilin-type pepti 99.5 1E-14 2.2E-19 112.1 5.0 77 6-83 9-93 (298)
31 KOG0109 RNA-binding protein LA 99.5 2.3E-14 4.9E-19 114.0 6.6 98 5-103 76-173 (346)
32 TIGR01645 half-pint poly-U bin 99.5 4.5E-14 9.9E-19 124.4 9.0 73 5-78 105-185 (612)
33 TIGR01628 PABP-1234 polyadenyl 99.5 6.2E-14 1.4E-18 123.9 9.9 76 5-81 283-365 (562)
34 KOG0149 Predicted RNA-binding 99.5 2.4E-14 5.2E-19 110.8 6.3 71 7-79 12-90 (247)
35 TIGR01622 SF-CC1 splicing fact 99.5 9.4E-14 2E-18 119.7 9.7 73 5-79 87-167 (457)
36 PF13893 RRM_5: RNA recognitio 99.5 1.6E-13 3.4E-18 85.1 8.0 53 25-77 1-56 (56)
37 TIGR01628 PABP-1234 polyadenyl 99.5 8E-14 1.7E-18 123.2 9.2 70 9-79 2-79 (562)
38 TIGR01648 hnRNP-R-Q heterogene 99.5 1.1E-13 2.3E-18 121.7 8.8 71 5-76 56-134 (578)
39 KOG0126 Predicted RNA-binding 99.5 4.9E-15 1.1E-19 110.7 0.2 74 5-79 33-114 (219)
40 cd00590 RRM RRM (RNA recogniti 99.5 3.5E-13 7.5E-18 86.1 8.5 67 9-76 1-74 (74)
41 KOG0131 Splicing factor 3b, su 99.5 8.2E-14 1.8E-18 104.1 6.0 75 3-78 5-87 (203)
42 COG0724 RNA-binding proteins ( 99.5 3E-13 6.5E-18 106.5 9.1 72 7-79 115-194 (306)
43 smart00360 RRM RNA recognition 99.5 3.3E-13 7.2E-18 85.4 7.3 63 12-75 1-71 (71)
44 KOG0144 RNA-binding protein CU 99.4 9.6E-14 2.1E-18 115.4 5.0 78 5-83 122-209 (510)
45 KOG0127 Nucleolar protein fibr 99.4 7.2E-13 1.6E-17 113.0 8.3 76 6-82 116-198 (678)
46 KOG0117 Heterogeneous nuclear 99.4 2.1E-12 4.5E-17 107.9 9.1 73 5-78 81-162 (506)
47 KOG4206 Spliceosomal protein s 99.4 2.2E-12 4.7E-17 99.5 7.6 80 2-82 4-92 (221)
48 TIGR01642 U2AF_lg U2 snRNP aux 99.4 2.2E-12 4.8E-17 112.5 8.7 71 5-77 173-257 (509)
49 KOG0106 Alternative splicing f 99.4 9.6E-13 2.1E-17 102.0 5.3 73 8-81 2-74 (216)
50 KOG0415 Predicted peptidyl pro 99.3 1E-12 2.2E-17 107.2 5.3 76 4-80 236-319 (479)
51 KOG0108 mRNA cleavage and poly 99.3 3.1E-12 6.7E-17 108.9 8.4 74 8-82 19-100 (435)
52 KOG0148 Apoptosis-promoting RN 99.3 2.2E-12 4.7E-17 101.9 6.3 74 7-81 62-143 (321)
53 KOG0132 RNA polymerase II C-te 99.3 2.9E-12 6.3E-17 113.0 7.6 75 7-82 421-497 (894)
54 KOG0146 RNA-binding protein ET 99.3 3.7E-12 8E-17 100.6 5.2 80 3-83 281-368 (371)
55 KOG4212 RNA-binding protein hn 99.3 1.1E-11 2.3E-16 103.6 7.9 72 7-79 44-123 (608)
56 KOG0127 Nucleolar protein fibr 99.3 1.1E-11 2.3E-16 106.0 8.0 77 4-81 289-379 (678)
57 KOG0144 RNA-binding protein CU 99.3 7.7E-12 1.7E-16 104.2 6.7 76 5-81 32-118 (510)
58 KOG0145 RNA-binding protein EL 99.3 2.6E-11 5.6E-16 95.5 9.1 74 6-80 277-358 (360)
59 KOG0145 RNA-binding protein EL 99.2 2.7E-11 6E-16 95.4 8.0 77 5-82 39-123 (360)
60 KOG0153 Predicted RNA-binding 99.2 3.1E-11 6.7E-16 98.2 8.0 75 4-79 225-302 (377)
61 smart00361 RRM_1 RNA recogniti 99.2 3.4E-11 7.3E-16 78.0 6.3 53 22-74 2-69 (70)
62 KOG0147 Transcriptional coacti 99.2 1.7E-11 3.7E-16 104.7 6.2 71 9-80 280-358 (549)
63 KOG0124 Polypyrimidine tract-b 99.2 1.3E-11 2.8E-16 101.3 4.2 69 7-76 113-189 (544)
64 KOG0131 Splicing factor 3b, su 99.2 8.8E-11 1.9E-15 88.0 6.8 80 4-84 93-181 (203)
65 KOG0110 RNA-binding protein (R 99.1 9.8E-11 2.1E-15 102.6 7.3 68 10-78 518-596 (725)
66 KOG0116 RasGAP SH3 binding pro 99.1 5.6E-10 1.2E-14 94.7 11.3 72 7-80 288-367 (419)
67 KOG0106 Alternative splicing f 99.1 1.1E-10 2.4E-15 90.6 6.4 68 6-74 98-165 (216)
68 KOG0123 Polyadenylate-binding 99.1 1.8E-10 3.9E-15 97.0 7.8 76 5-82 74-155 (369)
69 KOG4661 Hsp27-ERE-TATA-binding 99.1 1.1E-10 2.4E-15 100.4 6.5 74 7-81 405-486 (940)
70 KOG0146 RNA-binding protein ET 99.1 7.8E-11 1.7E-15 93.2 4.7 76 6-82 18-103 (371)
71 KOG1457 RNA binding protein (c 99.1 9.4E-10 2E-14 85.0 9.2 79 5-84 32-122 (284)
72 KOG4212 RNA-binding protein hn 99.1 2.9E-10 6.4E-15 95.2 6.6 73 4-77 533-608 (608)
73 KOG0533 RRM motif-containing p 99.0 1.9E-09 4.1E-14 85.4 8.2 75 6-81 82-163 (243)
74 KOG0110 RNA-binding protein (R 99.0 4.1E-10 8.8E-15 98.8 4.6 74 6-80 612-693 (725)
75 KOG4454 RNA binding protein (R 99.0 1.6E-10 3.4E-15 89.0 1.8 76 3-79 5-86 (267)
76 KOG0124 Polypyrimidine tract-b 98.9 1.8E-09 3.9E-14 88.8 6.4 74 7-81 210-291 (544)
77 KOG0151 Predicted splicing reg 98.9 2.1E-09 4.6E-14 94.5 6.2 76 4-80 171-257 (877)
78 KOG4208 Nucleolar RNA-binding 98.9 5.3E-09 1.1E-13 79.9 7.6 75 5-80 47-130 (214)
79 KOG4660 Protein Mei2, essentia 98.9 1.1E-09 2.4E-14 94.0 3.8 69 4-73 72-143 (549)
80 KOG4205 RNA-binding protein mu 98.9 2.1E-09 4.5E-14 88.2 5.0 76 4-81 3-86 (311)
81 KOG1190 Polypyrimidine tract-b 98.9 9.9E-09 2.1E-13 85.4 8.1 75 7-81 297-374 (492)
82 KOG1548 Transcription elongati 98.8 9.5E-09 2.1E-13 83.9 7.2 77 4-81 131-222 (382)
83 KOG4205 RNA-binding protein mu 98.8 4.9E-09 1.1E-13 86.0 4.9 76 6-83 96-179 (311)
84 KOG0123 Polyadenylate-binding 98.8 2.4E-08 5.2E-13 84.2 8.0 69 8-80 2-75 (369)
85 PF11608 Limkain-b1: Limkain b 98.7 6.5E-08 1.4E-12 64.0 7.2 70 8-80 3-77 (90)
86 KOG4209 Splicing factor RNPS1, 98.7 3.2E-08 7E-13 78.3 6.1 74 5-80 99-180 (231)
87 PF04059 RRM_2: RNA recognitio 98.6 3.4E-07 7.4E-12 62.8 7.6 73 8-81 2-88 (97)
88 KOG1456 Heterogeneous nuclear 98.6 3.5E-07 7.5E-12 75.7 8.9 78 3-80 283-363 (494)
89 PF08777 RRM_3: RNA binding mo 98.6 1.9E-07 4.1E-12 65.2 6.3 69 8-77 2-77 (105)
90 KOG4211 Splicing factor hnRNP- 98.6 2.6E-07 5.7E-12 78.6 8.1 74 4-80 7-86 (510)
91 KOG4206 Spliceosomal protein s 98.5 3E-07 6.4E-12 71.3 7.4 74 4-78 143-220 (221)
92 KOG1995 Conserved Zn-finger pr 98.5 1.9E-07 4.2E-12 76.6 6.4 79 2-81 61-155 (351)
93 KOG1457 RNA binding protein (c 98.5 1.2E-07 2.6E-12 73.5 3.2 61 6-67 209-273 (284)
94 KOG0120 Splicing factor U2AF, 98.4 3E-07 6.5E-12 79.4 3.5 75 6-81 288-370 (500)
95 KOG0105 Alternative splicing f 98.3 5.7E-06 1.2E-10 62.7 9.4 62 7-69 115-177 (241)
96 KOG1456 Heterogeneous nuclear 98.3 2.9E-06 6.3E-11 70.3 8.5 78 4-81 117-200 (494)
97 KOG2416 Acinus (induces apopto 98.3 5.7E-07 1.2E-11 78.1 3.7 75 4-79 441-521 (718)
98 KOG1855 Predicted RNA-binding 98.3 6.1E-07 1.3E-11 75.3 3.6 69 6-75 230-319 (484)
99 KOG0147 Transcriptional coacti 98.2 2.8E-06 6E-11 73.3 5.3 74 5-78 441-526 (549)
100 KOG4211 Splicing factor hnRNP- 98.2 5.5E-06 1.2E-10 70.7 6.9 71 6-78 102-180 (510)
101 PF14605 Nup35_RRM_2: Nup53/35 98.1 9E-06 1.9E-10 49.7 5.4 50 8-59 2-53 (53)
102 COG5175 MOT2 Transcriptional r 98.1 7.2E-06 1.6E-10 67.2 6.0 72 7-78 114-201 (480)
103 KOG1190 Polypyrimidine tract-b 98.1 1.1E-05 2.4E-10 67.6 6.8 74 5-79 412-490 (492)
104 PF05172 Nup35_RRM: Nup53/35/4 98.0 1.8E-05 3.8E-10 54.7 6.4 71 5-78 4-90 (100)
105 KOG0226 RNA-binding proteins [ 98.0 6.2E-06 1.4E-10 65.2 4.3 74 4-78 187-268 (290)
106 KOG2314 Translation initiation 98.0 2.6E-05 5.6E-10 67.8 7.8 72 5-78 56-142 (698)
107 KOG0129 Predicted RNA-binding 98.0 2.4E-05 5.2E-10 67.2 7.2 59 2-61 365-432 (520)
108 KOG4676 Splicing factor, argin 97.9 8.8E-07 1.9E-11 73.6 -1.9 69 8-78 152-224 (479)
109 PF08952 DUF1866: Domain of un 97.9 5.9E-05 1.3E-09 55.2 7.7 76 5-81 25-108 (146)
110 KOG1548 Transcription elongati 97.9 3.4E-05 7.5E-10 63.4 6.6 74 6-79 264-351 (382)
111 KOG4210 Nuclear localization s 97.9 1.5E-05 3.2E-10 65.1 4.4 75 6-82 183-266 (285)
112 KOG4676 Splicing factor, argin 97.9 1.9E-05 4.1E-10 65.9 4.7 73 2-76 2-85 (479)
113 KOG0120 Splicing factor U2AF, 97.8 5.4E-05 1.2E-09 65.7 7.0 56 23-78 424-490 (500)
114 KOG0129 Predicted RNA-binding 97.8 8.7E-05 1.9E-09 63.9 7.5 56 7-63 259-327 (520)
115 KOG2202 U2 snRNP splicing fact 97.8 9.9E-06 2.2E-10 64.0 1.5 57 23-79 83-147 (260)
116 KOG4849 mRNA cleavage factor I 97.8 1.9E-05 4.2E-10 65.0 3.1 68 7-75 80-157 (498)
117 KOG2193 IGF-II mRNA-binding pr 97.7 4.7E-05 1E-09 64.2 4.2 74 8-82 2-78 (584)
118 KOG4307 RNA binding protein RB 97.6 0.00018 3.8E-09 64.1 7.3 68 8-76 868-943 (944)
119 KOG0112 Large RNA-binding prot 97.6 6.9E-05 1.5E-09 68.2 4.6 78 4-82 452-533 (975)
120 PF08675 RNA_bind: RNA binding 97.5 0.00059 1.3E-08 45.3 7.0 56 7-64 9-64 (87)
121 KOG1365 RNA-binding protein Fu 97.5 0.0001 2.2E-09 61.5 3.6 72 6-78 279-360 (508)
122 KOG3152 TBP-binding protein, a 97.5 7.3E-05 1.6E-09 59.2 2.4 65 6-71 73-157 (278)
123 PF10309 DUF2414: Protein of u 97.4 0.001 2.2E-08 41.8 6.9 53 7-62 5-62 (62)
124 KOG1996 mRNA splicing factor [ 97.3 0.00048 1E-08 55.7 5.7 57 22-78 300-365 (378)
125 PF03880 DbpA: DbpA RNA bindin 97.2 0.0015 3.2E-08 42.6 6.3 59 18-77 11-74 (74)
126 KOG4285 Mitotic phosphoprotein 97.1 0.002 4.4E-08 52.4 7.2 67 7-76 197-266 (350)
127 PF15023 DUF4523: Protein of u 97.1 0.0042 9.1E-08 45.4 7.7 74 3-78 82-160 (166)
128 KOG0128 RNA-binding protein SA 96.9 0.00042 9.1E-09 62.9 1.8 74 7-81 736-816 (881)
129 PF04847 Calcipressin: Calcipr 96.9 0.0022 4.8E-08 49.1 5.5 60 21-80 8-71 (184)
130 KOG4307 RNA binding protein RB 96.7 0.00086 1.9E-08 59.9 2.2 72 5-77 432-511 (944)
131 PF03467 Smg4_UPF3: Smg-4/UPF3 96.7 0.0023 4.9E-08 48.8 4.0 78 1-79 1-97 (176)
132 KOG0112 Large RNA-binding prot 96.7 0.00027 5.8E-09 64.5 -1.4 72 5-77 370-448 (975)
133 PRK11634 ATP-dependent RNA hel 96.6 0.059 1.3E-06 48.9 13.2 62 18-80 497-563 (629)
134 KOG2591 c-Mpl binding protein, 96.6 0.0033 7.2E-08 54.9 4.8 67 6-73 174-245 (684)
135 KOG2135 Proteins containing th 96.6 0.0013 2.8E-08 56.3 2.1 59 21-80 386-446 (526)
136 KOG2068 MOT2 transcription fac 96.5 0.0009 1.9E-08 55.0 0.8 73 8-80 78-163 (327)
137 KOG1365 RNA-binding protein Fu 96.5 0.0025 5.4E-08 53.5 3.1 62 10-73 164-236 (508)
138 KOG2253 U1 snRNP complex, subu 96.5 0.0017 3.8E-08 57.6 2.3 73 3-77 36-108 (668)
139 PF11767 SET_assoc: Histone ly 96.4 0.024 5.1E-07 36.1 6.6 55 19-74 11-65 (66)
140 KOG4574 RNA-binding protein (c 96.1 0.0038 8.2E-08 57.0 2.5 70 11-81 302-375 (1007)
141 KOG0128 RNA-binding protein SA 96.0 0.0005 1.1E-08 62.5 -3.3 61 7-68 667-735 (881)
142 KOG4660 Protein Mei2, essentia 95.7 0.016 3.4E-07 50.7 4.7 76 6-82 387-475 (549)
143 KOG2318 Uncharacterized conser 95.6 0.072 1.6E-06 47.0 8.1 76 5-80 172-306 (650)
144 PF07576 BRAP2: BRCA1-associat 95.6 0.25 5.3E-06 34.7 9.4 59 9-68 15-80 (110)
145 KOG0115 RNA-binding protein p5 95.4 0.016 3.4E-07 46.3 3.4 69 8-77 32-111 (275)
146 KOG4210 Nuclear localization s 93.7 0.03 6.5E-07 45.9 1.2 72 6-78 87-166 (285)
147 KOG0804 Cytoplasmic Zn-finger 92.9 0.32 6.9E-06 41.9 6.1 64 5-69 72-142 (493)
148 KOG4207 Predicted splicing fac 91.8 2.6 5.6E-05 33.0 9.4 23 45-67 61-85 (256)
149 KOG4019 Calcineurin-mediated s 89.9 0.44 9.6E-06 36.2 3.6 74 7-81 10-91 (193)
150 KOG2891 Surface glycoprotein [ 89.8 0.13 2.9E-06 41.7 0.8 61 6-67 148-247 (445)
151 KOG4410 5-formyltetrahydrofola 89.2 1.2 2.6E-05 36.4 5.7 56 7-63 330-395 (396)
152 KOG2193 IGF-II mRNA-binding pr 87.6 0.018 3.9E-07 49.0 -5.7 72 7-79 80-156 (584)
153 COG5638 Uncharacterized conser 87.6 2.5 5.4E-05 36.3 6.9 67 4-70 143-286 (622)
154 PF03468 XS: XS domain; Inter 84.5 1.8 3.8E-05 30.7 3.9 50 9-59 10-74 (116)
155 PRK10629 EnvZ/OmpR regulon mod 80.8 15 0.00033 26.4 7.6 72 6-78 34-109 (127)
156 KOG4483 Uncharacterized conser 80.5 3.9 8.4E-05 35.1 5.1 54 7-61 391-446 (528)
157 KOG0107 Alternative splicing f 79.4 22 0.00047 27.2 8.3 8 52-59 60-67 (195)
158 KOG1295 Nonsense-mediated deca 77.5 3.5 7.6E-05 34.9 4.0 62 5-67 5-77 (376)
159 PF02714 DUF221: Domain of unk 76.0 3.1 6.8E-05 34.2 3.4 35 45-81 1-35 (325)
160 PF00403 HMA: Heavy-metal-asso 76.0 12 0.00026 22.6 5.3 52 9-61 1-58 (62)
161 KOG2548 SWAP mRNA splicing reg 75.7 1.9 4.1E-05 38.0 2.0 7 170-176 461-467 (653)
162 PRK02886 hypothetical protein; 75.0 9.4 0.0002 25.6 4.7 54 5-67 5-58 (87)
163 KOG4357 Uncharacterized conser 70.8 22 0.00048 25.6 6.1 64 6-69 65-140 (164)
164 PF09902 DUF2129: Uncharacteri 70.6 10 0.00022 24.4 4.0 39 28-67 16-54 (71)
165 KOG4365 Uncharacterized conser 70.5 0.53 1.2E-05 40.6 -2.5 70 8-79 4-81 (572)
166 KOG2295 C2H2 Zn-finger protein 70.2 0.68 1.5E-05 41.0 -1.9 66 5-71 229-302 (648)
167 COG0724 RNA-binding proteins ( 69.8 5.6 0.00012 30.5 3.3 36 4-40 222-257 (306)
168 PF14111 DUF4283: Domain of un 68.4 2.8 6E-05 30.3 1.2 70 8-78 16-90 (153)
169 COG0150 PurM Phosphoribosylami 67.9 1.5 3.3E-05 36.7 -0.3 45 21-65 274-322 (345)
170 KOG4008 rRNA processing protei 65.6 4 8.6E-05 32.5 1.6 36 4-40 37-72 (261)
171 PF14893 PNMA: PNMA 65.5 7.5 0.00016 32.6 3.3 49 3-52 14-72 (331)
172 PF15513 DUF4651: Domain of un 64.2 12 0.00026 23.4 3.3 18 23-40 9-26 (62)
173 PF06495 Transformer: Fruit fl 62.2 13 0.00029 28.1 3.8 7 172-178 101-107 (182)
174 PF08734 GYD: GYD domain; Int 61.8 34 0.00073 22.9 5.5 41 22-62 22-67 (91)
175 KOG0156 Cytochrome P450 CYP2 s 61.3 18 0.00038 32.0 5.1 64 6-72 31-97 (489)
176 PRK02302 hypothetical protein; 59.8 20 0.00043 24.1 4.0 38 29-67 23-60 (89)
177 PRK14548 50S ribosomal protein 59.8 26 0.00057 23.3 4.5 50 11-61 24-80 (84)
178 cd00027 BRCT Breast Cancer Sup 59.4 29 0.00062 20.4 4.6 46 8-54 2-47 (72)
179 PF08544 GHMP_kinases_C: GHMP 59.0 32 0.00069 21.8 4.9 39 23-62 37-79 (85)
180 COG2608 CopZ Copper chaperone 58.4 31 0.00068 21.7 4.7 43 8-51 4-48 (71)
181 KOG4840 Predicted hydrolases o 57.4 37 0.0008 27.3 5.6 72 6-78 36-116 (299)
182 PF10567 Nab6_mRNP_bdg: RNA-re 57.1 18 0.00039 29.8 4.0 71 7-78 15-106 (309)
183 PF07292 NID: Nmi/IFP 35 domai 54.7 8.8 0.00019 25.8 1.6 25 5-30 50-74 (88)
184 KOG0862 Synaptobrevin/VAMP-lik 53.9 7.2 0.00016 30.6 1.2 30 23-52 89-119 (216)
185 PRK08559 nusG transcription an 53.4 41 0.0009 24.7 5.2 31 35-65 36-69 (153)
186 smart00596 PRE_C2HC PRE_C2HC d 53.1 16 0.00035 23.4 2.5 53 23-78 2-63 (69)
187 PF07530 PRE_C2HC: Associated 53.0 24 0.00052 22.3 3.4 54 23-79 2-64 (68)
188 PF03439 Spt5-NGN: Early trans 52.3 34 0.00074 22.4 4.2 33 34-66 33-68 (84)
189 PF11411 DNA_ligase_IV: DNA li 51.5 9.9 0.00022 21.1 1.2 17 18-34 19-35 (36)
190 PF11491 DUF3213: Protein of u 50.6 35 0.00075 22.7 3.8 64 10-75 3-72 (88)
191 PF11823 DUF3343: Protein of u 50.5 22 0.00049 22.5 3.0 25 43-67 2-26 (73)
192 KOG4454 RNA binding protein (R 49.4 3.8 8.3E-05 32.4 -0.9 65 5-70 78-153 (267)
193 cd04908 ACT_Bt0572_1 N-termina 48.7 60 0.0013 19.7 7.4 45 21-66 14-63 (66)
194 PRK11230 glycolate oxidase sub 47.8 63 0.0014 28.7 6.3 42 22-63 203-255 (499)
195 PF01782 RimM: RimM N-terminal 47.6 36 0.00078 22.0 3.8 30 37-67 49-78 (84)
196 KOG2187 tRNA uracil-5-methyltr 44.8 14 0.0003 32.9 1.7 40 41-80 62-101 (534)
197 KOG0633 Histidinol phosphate a 42.7 70 0.0015 26.4 5.3 57 6-65 160-219 (375)
198 PF09869 DUF2096: Uncharacteri 40.5 84 0.0018 23.7 5.0 46 14-62 118-163 (169)
199 COG5236 Uncharacterized conser 38.9 67 0.0015 27.3 4.7 51 21-71 263-313 (493)
200 PF08156 NOP5NT: NOP5NT (NUC12 38.5 10 0.00022 24.0 -0.0 38 23-62 27-64 (67)
201 PF13820 Nucleic_acid_bd: Puta 38.2 34 0.00074 25.3 2.7 56 9-64 6-67 (149)
202 TIGR02381 cspD cold shock doma 37.9 95 0.0021 19.4 4.4 48 32-80 3-56 (68)
203 COG0002 ArgC Acetylglutamate s 37.8 54 0.0012 27.8 4.1 24 17-40 254-278 (349)
204 PF07693 KAP_NTPase: KAP famil 37.4 29 0.00063 28.2 2.5 69 8-81 174-250 (325)
205 KOG4213 RNA-binding protein La 37.4 53 0.0012 25.2 3.6 47 20-67 118-174 (205)
206 PRK12450 foldase protein PrsA; 37.3 66 0.0014 26.5 4.6 43 19-67 132-176 (309)
207 PF08538 DUF1749: Protein of u 37.2 36 0.00078 28.3 2.9 57 5-62 32-97 (303)
208 COG1098 VacB Predicted RNA bin 37.1 86 0.0019 22.5 4.4 47 32-78 5-62 (129)
209 TIGR00110 ilvD dihydroxy-acid 37.1 95 0.0021 27.9 5.7 36 42-80 383-418 (535)
210 PF05274 Baculo_E25: Occlusion 36.6 46 0.001 25.2 3.1 33 43-75 143-176 (182)
211 PF13046 DUF3906: Protein of u 36.2 60 0.0013 20.4 3.1 27 21-47 31-63 (64)
212 PRK11901 hypothetical protein; 36.0 1.2E+02 0.0026 25.4 5.8 55 7-66 245-308 (327)
213 PF13721 SecD-TM1: SecD export 35.4 1.4E+02 0.0031 20.3 7.1 58 7-64 31-91 (101)
214 COG0030 KsgA Dimethyladenosine 35.0 58 0.0012 26.4 3.7 28 7-35 95-122 (259)
215 cd04883 ACT_AcuB C-terminal AC 35.0 1.1E+02 0.0023 18.6 5.8 46 21-67 14-68 (72)
216 PF07237 DUF1428: Protein of u 35.0 1.2E+02 0.0025 21.1 4.7 39 24-62 24-85 (103)
217 TIGR00405 L26e_arch ribosomal 34.3 1.3E+02 0.0028 21.6 5.3 25 41-65 37-61 (145)
218 cd04889 ACT_PDH-BS-like C-term 34.2 96 0.0021 17.9 4.7 39 21-59 11-55 (56)
219 PF06804 Lipoprotein_18: NlpB/ 34.0 70 0.0015 26.3 4.2 49 6-55 197-246 (303)
220 TIGR00387 glcD glycolate oxida 33.3 1.2E+02 0.0026 26.0 5.7 43 20-62 144-197 (413)
221 COG5353 Uncharacterized protei 33.2 1.6E+02 0.0035 21.8 5.5 47 7-54 87-154 (161)
222 COG1828 PurS Phosphoribosylfor 33.1 75 0.0016 21.1 3.4 51 22-72 19-72 (83)
223 PF15063 TC1: Thyroid cancer p 32.6 24 0.00052 23.0 1.0 24 11-35 29-52 (79)
224 PF02700 PurS: Phosphoribosylf 32.6 1.1E+02 0.0023 20.0 4.1 60 9-69 4-68 (80)
225 KOG2854 Possible pfkB family c 32.6 51 0.0011 27.7 3.1 23 42-65 212-234 (343)
226 PF14268 YoaP: YoaP-like 32.5 31 0.00068 20.0 1.4 34 44-77 2-37 (44)
227 KOG4246 Predicted DNA-binding 32.5 20 0.00043 33.8 0.8 30 152-181 333-362 (1194)
228 TIGR03636 L23_arch archaeal ri 32.5 97 0.0021 20.2 3.8 51 10-61 16-73 (77)
229 cd06405 PB1_Mekk2_3 The PB1 do 32.3 1.5E+02 0.0032 19.4 6.4 59 17-76 17-76 (79)
230 COG4010 Uncharacterized protei 32.2 1.2E+02 0.0025 22.5 4.5 46 14-62 118-163 (170)
231 PF01762 Galactosyl_T: Galacto 32.0 56 0.0012 24.6 3.2 54 6-60 20-76 (195)
232 cd04458 CSP_CDS Cold-Shock Pro 32.0 36 0.00077 20.8 1.7 47 33-79 3-54 (65)
233 PF00313 CSD: 'Cold-shock' DNA 31.5 40 0.00087 20.6 1.9 46 33-78 3-53 (66)
234 PF09162 Tap-RNA_bind: Tap, RN 31.3 1.3E+02 0.0028 20.2 4.4 58 20-78 18-81 (88)
235 PF01037 AsnC_trans_reg: AsnC 30.8 1.3E+02 0.0028 18.3 6.5 40 22-61 12-55 (74)
236 PF12829 Mhr1: Transcriptional 30.1 51 0.0011 22.3 2.3 45 19-63 23-72 (91)
237 PF03254 XG_FTase: Xyloglucan 30.1 50 0.0011 29.2 2.8 64 5-70 352-419 (476)
238 COG2813 RsmC 16S RNA G1207 met 30.0 23 0.00049 29.3 0.7 48 4-53 63-110 (300)
239 TIGR00302 phosphoribosylformyl 30.0 1.6E+02 0.0034 19.0 5.1 61 9-70 4-69 (80)
240 PF04127 DFP: DNA / pantothena 29.6 1.4E+02 0.0031 22.7 5.0 53 9-62 20-79 (185)
241 cd07052 BMC_like_1_repeat2 Bac 29.6 1.6E+02 0.0034 19.3 4.5 26 35-60 46-72 (79)
242 COG0735 Fur Fe2+/Zn2+ uptake r 29.4 1.7E+02 0.0036 21.2 5.2 53 24-76 60-134 (145)
243 cd04880 ACT_AAAH-PDT-like ACT 29.0 1.5E+02 0.0032 18.4 4.3 45 20-64 11-66 (75)
244 PF00398 RrnaAD: Ribosomal RNA 28.9 43 0.00094 26.7 2.2 44 7-60 97-142 (262)
245 cd04918 ACT_AK1-AT_2 ACT domai 28.8 1.4E+02 0.003 18.1 4.4 54 11-65 6-62 (65)
246 cd01611 GABARAP Ubiquitin doma 28.7 82 0.0018 22.0 3.2 15 17-31 48-62 (112)
247 cd04882 ACT_Bt0572_2 C-termina 28.6 1.3E+02 0.0028 17.6 4.4 44 21-65 12-62 (65)
248 PLN02805 D-lactate dehydrogena 28.4 2E+02 0.0043 26.0 6.3 43 21-63 279-332 (555)
249 cd00412 pyrophosphatase Inorga 28.2 56 0.0012 24.3 2.5 38 22-62 116-153 (155)
250 KOG1719 Dual specificity phosp 28.2 1.5E+02 0.0032 22.4 4.6 26 50-75 90-115 (183)
251 KOG4388 Hormone-sensitive lipa 28.2 75 0.0016 29.2 3.6 59 5-63 787-852 (880)
252 cd04931 ACT_PAH ACT domain of 28.0 1.9E+02 0.004 19.3 6.5 44 21-64 27-80 (90)
253 PF02829 3H: 3H domain; Inter 27.9 1.6E+02 0.0035 20.1 4.5 45 20-64 9-58 (98)
254 KOG3671 Actin regulatory prote 27.9 68 0.0015 28.5 3.2 46 20-65 90-138 (569)
255 PF00533 BRCT: BRCA1 C Terminu 27.9 34 0.00073 21.1 1.1 36 6-43 7-42 (78)
256 smart00457 MACPF membrane-atta 27.9 1.1E+02 0.0023 23.2 4.1 27 13-40 31-59 (194)
257 PF09250 Prim-Pol: Bifunctiona 27.8 92 0.002 22.4 3.6 34 20-53 32-67 (163)
258 KOG0677 Actin-related protein 27.6 1.2E+02 0.0026 24.9 4.4 30 4-33 98-129 (389)
259 COG3444 Phosphotransferase sys 27.2 2.1E+02 0.0045 21.5 5.3 23 42-64 76-98 (159)
260 PRK05772 translation initiatio 27.2 1.6E+02 0.0036 25.1 5.3 44 20-63 3-57 (363)
261 PF10087 DUF2325: Uncharacteri 27.0 1.9E+02 0.0042 19.1 5.2 29 8-39 1-29 (97)
262 PF09702 Cas_Csa5: CRISPR-asso 26.9 71 0.0015 22.1 2.5 24 4-31 61-84 (105)
263 PRK15464 cold shock-like prote 26.8 48 0.001 21.1 1.7 48 32-80 6-59 (70)
264 PF09707 Cas_Cas2CT1978: CRISP 26.6 1.2E+02 0.0026 20.2 3.6 43 6-50 24-72 (86)
265 KOG0291 WD40-repeat-containing 26.6 16 0.00034 34.0 -0.9 21 41-61 380-400 (893)
266 PRK09937 stationary phase/star 26.5 55 0.0012 21.0 1.9 48 33-81 4-57 (74)
267 PLN02373 soluble inorganic pyr 26.4 69 0.0015 24.7 2.7 37 22-62 138-174 (188)
268 COG5594 Uncharacterized integr 26.3 82 0.0018 29.7 3.6 35 43-78 358-392 (827)
269 PRK10162 acetyl esterase; Prov 26.3 1.7E+02 0.0037 23.9 5.3 56 6-61 249-307 (318)
270 COG1308 EGD2 Transcription fac 26.0 1.2E+02 0.0027 21.6 3.7 29 20-64 83-111 (122)
271 COG0407 HemE Uroporphyrinogen- 26.0 46 0.001 28.2 1.8 55 9-63 286-346 (352)
272 PF09078 CheY-binding: CheY bi 25.9 1.8E+02 0.0039 18.3 4.6 63 9-74 2-64 (65)
273 COG4874 Uncharacterized protei 25.8 1.8E+02 0.004 23.6 5.0 70 6-77 157-260 (318)
274 COG0018 ArgS Arginyl-tRNA synt 25.8 3.9E+02 0.0084 24.4 7.7 61 23-83 61-130 (577)
275 PHA03008 hypothetical protein; 25.7 1.2E+02 0.0026 23.8 3.8 44 7-51 21-64 (234)
276 PRK09507 cspE cold shock prote 25.7 54 0.0012 20.7 1.7 48 32-80 5-58 (69)
277 PRK14998 cold shock-like prote 25.7 59 0.0013 20.8 2.0 49 32-81 3-57 (73)
278 PF13037 DUF3898: Domain of un 25.3 91 0.002 20.9 2.7 42 22-63 33-90 (91)
279 PRK14461 ribosomal RNA large s 25.2 44 0.00096 28.6 1.6 44 34-77 168-212 (371)
280 KOG1999 RNA polymerase II tran 25.2 1.2E+02 0.0027 29.2 4.5 28 41-68 209-236 (1024)
281 TIGR00755 ksgA dimethyladenosi 24.8 88 0.0019 24.7 3.2 24 9-33 96-119 (253)
282 smart00195 DSPc Dual specifici 24.8 2E+02 0.0043 20.0 4.8 17 9-26 7-23 (138)
283 cd01612 APG12_C Ubiquitin-like 24.8 1.5E+02 0.0033 19.6 3.9 15 17-31 23-37 (87)
284 PRK15463 cold shock-like prote 24.8 56 0.0012 20.7 1.7 50 32-81 6-60 (70)
285 KOG3702 Nuclear polyadenylated 24.7 38 0.00082 31.0 1.1 64 9-74 513-584 (681)
286 cd04904 ACT_AAAH ACT domain of 24.6 1.9E+02 0.004 18.1 6.0 45 20-64 12-65 (74)
287 PRK10943 cold shock-like prote 24.5 58 0.0013 20.5 1.7 48 32-80 5-58 (69)
288 COG3254 Uncharacterized conser 24.5 1.6E+02 0.0034 20.5 3.9 36 23-59 27-68 (105)
289 KOG2888 Putative RNA binding p 24.3 36 0.00077 28.7 0.9 12 21-32 170-181 (453)
290 PF05711 TylF: Macrocin-O-meth 24.2 70 0.0015 25.7 2.5 55 20-74 140-210 (248)
291 TIGR01463 mtaA_cmuA methyltran 24.1 56 0.0012 27.0 2.0 53 8-60 277-333 (340)
292 COG1897 MetA Homoserine trans- 24.0 58 0.0013 26.5 2.0 21 17-37 77-97 (307)
293 PTZ00191 60S ribosomal protein 23.6 2.1E+02 0.0045 21.1 4.7 51 7-60 83-140 (145)
294 PF13773 DUF4170: Domain of un 23.5 1.2E+02 0.0027 19.3 3.0 30 47-76 30-59 (69)
295 cd04905 ACT_CM-PDT C-terminal 23.3 2E+02 0.0044 18.0 4.3 44 21-64 14-68 (80)
296 COG0225 MsrA Peptide methionin 23.2 87 0.0019 23.8 2.7 65 16-80 65-138 (174)
297 KOG3580 Tight junction protein 23.2 2.3E+02 0.0051 26.1 5.7 6 9-14 41-46 (1027)
298 PF12419 DUF3670: SNF2 Helicas 23.0 2.3E+02 0.0049 20.4 4.9 48 9-64 76-123 (141)
299 PRK09890 cold shock protein Cs 23.0 62 0.0013 20.4 1.6 48 32-80 6-59 (70)
300 PRK12933 secD preprotein trans 23.0 4.8E+02 0.01 24.0 7.7 75 7-81 40-115 (604)
301 COG5470 Uncharacterized conser 22.9 2.2E+02 0.0047 19.4 4.3 18 42-59 53-70 (96)
302 PRK05974 phosphoribosylformylg 22.8 2.2E+02 0.0048 18.3 5.0 37 9-46 4-44 (80)
303 PRK13828 rimM 16S rRNA-process 22.6 1.1E+02 0.0025 22.5 3.3 31 35-66 34-64 (161)
304 cd04489 ExoVII_LU_OBF ExoVII_L 22.5 29 0.00063 21.8 0.0 8 68-75 48-55 (78)
305 PLN02655 ent-kaurene oxidase 22.5 2E+02 0.0043 24.8 5.2 50 10-61 8-60 (466)
306 PF12623 Hen1_L: RNA repair, l 22.4 1.8E+02 0.0038 23.3 4.3 54 7-61 118-182 (245)
307 PLN00110 flavonoid 3',5'-hydro 22.4 2E+02 0.0043 25.2 5.2 50 10-61 40-91 (504)
308 PRK00274 ksgA 16S ribosomal RN 22.3 1E+02 0.0022 24.8 3.1 22 9-31 107-128 (272)
309 smart00666 PB1 PB1 domain. Pho 22.3 2.1E+02 0.0046 17.9 5.6 53 10-63 12-69 (81)
310 COG1207 GlmU N-acetylglucosami 22.0 1.9E+02 0.0041 25.4 4.8 56 8-65 98-174 (460)
311 COG4274 Uncharacterized conser 22.0 2.8E+02 0.006 19.2 4.7 39 23-61 33-76 (104)
312 PRK10354 RNA chaperone/anti-te 21.8 67 0.0015 20.2 1.6 48 32-80 6-59 (70)
313 PLN02936 epsilon-ring hydroxyl 21.8 87 0.0019 27.3 2.9 39 22-61 39-77 (489)
314 PRK10905 cell division protein 21.7 2.5E+02 0.0053 23.6 5.2 56 6-65 246-309 (328)
315 COG4009 Uncharacterized protei 21.6 80 0.0017 20.8 1.9 23 10-33 51-73 (88)
316 smart00738 NGN In Spt5p, this 21.4 1.1E+02 0.0024 20.3 2.8 24 42-65 59-82 (106)
317 PRK04405 prsA peptidylprolyl i 21.3 1.8E+02 0.0038 23.9 4.4 40 19-64 128-167 (298)
318 PRK00957 methionine synthase; 21.3 95 0.0021 25.3 2.9 56 6-62 236-297 (305)
319 CHL00123 rps6 ribosomal protei 21.1 2.7E+02 0.0059 18.7 6.6 53 5-60 6-80 (97)
320 PHA01632 hypothetical protein 21.0 85 0.0018 19.2 1.8 19 12-31 21-39 (64)
321 PRK07377 hypothetical protein; 21.0 1.6E+02 0.0034 22.7 3.7 31 23-61 97-127 (184)
322 PF00054 Laminin_G_1: Laminin 20.8 22 0.00048 25.1 -0.9 11 6-17 91-101 (131)
323 PF12993 DUF3877: Domain of un 20.8 1.8E+02 0.0039 22.1 3.9 33 18-50 107-142 (175)
324 PRK06369 nac nascent polypepti 20.8 1.5E+02 0.0032 21.0 3.3 31 19-65 74-104 (115)
325 TIGR00264 alpha-NAC-related pr 20.7 1.5E+02 0.0033 21.0 3.3 30 20-65 77-106 (116)
326 smart00650 rADc Ribosomal RNA 20.7 1.3E+02 0.0028 22.0 3.3 23 8-31 78-100 (169)
327 PTZ00338 dimethyladenosine tra 20.7 1.1E+02 0.0024 25.1 3.1 22 9-31 103-124 (294)
328 TIGR02223 ftsN cell division p 20.6 2E+02 0.0043 23.8 4.5 64 8-72 228-296 (298)
329 PLN00168 Cytochrome P450; Prov 20.5 2.8E+02 0.006 24.3 5.8 59 7-68 41-104 (519)
330 COG1058 CinA Predicted nucleot 20.5 2.2E+02 0.0047 23.0 4.6 56 8-64 181-244 (255)
331 cd03307 Mta_CmuA_like MtaA_Cmu 20.4 76 0.0017 26.1 2.1 9 9-17 267-275 (326)
332 PRK11558 putative ssRNA endonu 20.4 1.3E+02 0.0028 20.6 2.9 44 6-51 26-75 (97)
333 PRK14594 rimM 16S rRNA-process 20.3 1.3E+02 0.0028 22.4 3.2 31 35-66 51-81 (166)
334 COG2242 CobL Precorrin-6B meth 20.3 4.1E+02 0.0088 20.5 6.8 35 46-81 132-166 (187)
335 PHA03048 IMV membrane protein; 20.3 6.5 0.00014 26.4 -3.4 23 42-64 26-48 (93)
336 PF05727 UPF0228: Uncharacteri 20.2 1.8E+02 0.0039 20.9 3.6 53 20-76 64-122 (127)
337 COG0079 HisC Histidinol-phosph 20.2 1.3E+02 0.0028 25.4 3.5 51 6-59 145-198 (356)
338 PRK05904 coproporphyrinogen II 20.2 1.5E+02 0.0033 24.9 3.9 24 7-30 57-80 (353)
339 cd04929 ACT_TPH ACT domain of 20.1 2.5E+02 0.0053 17.8 4.6 44 21-64 13-65 (74)
340 KOG1134 Uncharacterized conser 20.0 1.4E+02 0.003 28.0 3.9 37 42-80 305-341 (728)
341 TIGR01873 cas_CT1978 CRISPR-as 20.0 1.6E+02 0.0035 19.7 3.2 44 6-51 24-74 (87)
No 1
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1e-23 Score=155.98 Aligned_cols=77 Identities=27% Similarity=0.454 Sum_probs=72.3
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE---eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecCC
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 81 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i---~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 81 (182)
+-.++|||||| +..+++.||+.+|.+||+|..||| +.|||||||++..+|++|+..|+|..|+|..|.|+++....
T Consensus 8 ~~~~kVYVGnL-~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 8 NGNTKVYVGNL-GSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCCceEEeccC-CCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 45889999999 789999999999999999999999 68999999999999999999999999999999999998665
Q ss_pred C
Q 030155 82 S 82 (182)
Q Consensus 82 ~ 82 (182)
.
T Consensus 87 r 87 (195)
T KOG0107|consen 87 R 87 (195)
T ss_pred c
Confidence 4
No 2
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.86 E-value=1.2e-20 Score=143.11 Aligned_cols=78 Identities=36% Similarity=0.505 Sum_probs=72.0
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030155 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
+++....|.|-|| .+.|+.++|..+|++||.|.+|.| .+|||||-|.+..+|++|+++|+|.+|+|+.|.|
T Consensus 9 dv~gm~SLkVdNL-TyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 9 DVEGMTSLKVDNL-TYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CcccceeEEecce-eccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 4556788999999 899999999999999999999999 4899999999999999999999999999999999
Q ss_pred EEeecCC
Q 030155 75 EYALKDD 81 (182)
Q Consensus 75 ~~a~~~~ 81 (182)
++|+-..
T Consensus 88 q~arygr 94 (256)
T KOG4207|consen 88 QMARYGR 94 (256)
T ss_pred hhhhcCC
Confidence 9998443
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=4.1e-20 Score=136.35 Aligned_cols=78 Identities=27% Similarity=0.439 Sum_probs=71.4
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
..+++|||+|| ++.++|++|+++|.+||.|..|.|+ ++||||+|.+.++|++||+.||+.+|.|+.|+|++
T Consensus 32 ~~~~~lfVgnL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 32 LMSTKLFIGGL-SWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35778999999 8999999999999999999999883 78999999999999999999999999999999999
Q ss_pred eecCCCC
Q 030155 77 ALKDDSE 83 (182)
Q Consensus 77 a~~~~~~ 83 (182)
+..+...
T Consensus 111 a~~~~~~ 117 (144)
T PLN03134 111 ANDRPSA 117 (144)
T ss_pred CCcCCCC
Confidence 9865543
No 4
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=1.6e-17 Score=124.32 Aligned_cols=76 Identities=28% Similarity=0.499 Sum_probs=70.6
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-----CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeec
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-----~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 79 (182)
...++|||||| |.+|.+.+|+++|.|||.|.+|.|+ ..||||+|++..+|+.||..-+|..++|..|.|+++..
T Consensus 4 r~~~~iyvGNL-P~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 4 RNSRRIYVGNL-PGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cccceEEecCC-CcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 45789999999 8899999999999999999999993 57999999999999999999999999999999999986
Q ss_pred CC
Q 030155 80 DD 81 (182)
Q Consensus 80 ~~ 81 (182)
-.
T Consensus 83 gr 84 (241)
T KOG0105|consen 83 GR 84 (241)
T ss_pred CC
Confidence 54
No 5
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.72 E-value=1.1e-16 Score=140.35 Aligned_cols=77 Identities=34% Similarity=0.506 Sum_probs=72.5
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccC--CceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecCCCC
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSE 83 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~--G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 83 (182)
..++|||+|| ++.+++++|+++|++| |+|+.|.+.++||||+|++.++|++||+.||+.+|.|+.|+|.|+++....
T Consensus 232 ~~k~LfVgNL-~~~~tee~L~~~F~~f~~G~I~rV~~~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 232 KVKILYVRNL-MTTTTEEIIEKSFSEFKPGKVERVKKIRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred cccEEEEeCC-CCCCCHHHHHHHHHhcCCCceEEEEeecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 4678999999 8999999999999999 999999999999999999999999999999999999999999999876544
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=6.2e-17 Score=134.86 Aligned_cols=75 Identities=28% Similarity=0.456 Sum_probs=69.6
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
.+.+|||+|| |+.+++++|+++|++||.|..|.| .+|||||+|.+.++|.+||+.|||..|.|+.|+|.|+
T Consensus 268 ~~~~lfV~NL-~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 268 AGYCIFVYNL-SPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3457999999 889999999999999999999988 3899999999999999999999999999999999999
Q ss_pred ecCC
Q 030155 78 LKDD 81 (182)
Q Consensus 78 ~~~~ 81 (182)
..+.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 8664
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.70 E-value=8.4e-17 Score=134.16 Aligned_cols=76 Identities=21% Similarity=0.413 Sum_probs=70.2
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030155 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
+....++|||+|| |+++++++|+++|++||+|+.|.|+ ++||||+|.++++|++||+.||+++|.++.|+|
T Consensus 103 ~~~~~~~LfVgnL-p~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYL-PQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 3456889999999 8999999999999999999999882 589999999999999999999999999999999
Q ss_pred EEeec
Q 030155 75 EYALK 79 (182)
Q Consensus 75 ~~a~~ 79 (182)
.++++
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 99865
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.69 E-value=9.5e-17 Score=103.13 Aligned_cols=63 Identities=33% Similarity=0.675 Sum_probs=59.3
Q ss_pred EEEccCCCCCCCHHHHHHhhccCCceEEEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 030155 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (182)
Q Consensus 10 l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 73 (182)
|||+|| |.++++++|+++|.+||.|..+.| .+++|||+|.+.++|++|++.|||..|.|+.|+
T Consensus 1 l~v~nl-p~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNL-PPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESE-TTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCC-CCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999 899999999999999999999888 267999999999999999999999999999885
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.68 E-value=1.9e-16 Score=131.95 Aligned_cols=75 Identities=24% Similarity=0.445 Sum_probs=69.9
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
+..+|||+|| |..++|++|+++|.+||+|..|.|+ +|||||+|.+.++|++||+.|||..|.|+.|.|+++
T Consensus 2 ~~~~l~V~nL-p~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 2 SKTNLIVNYL-PQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 5789999999 8999999999999999999999883 589999999999999999999999999999999999
Q ss_pred ecCC
Q 030155 78 LKDD 81 (182)
Q Consensus 78 ~~~~ 81 (182)
++..
T Consensus 81 ~~~~ 84 (352)
T TIGR01661 81 RPSS 84 (352)
T ss_pred cccc
Confidence 7654
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.68 E-value=8.8e-16 Score=128.06 Aligned_cols=77 Identities=25% Similarity=0.446 Sum_probs=68.5
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCC--cEEEEE
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVD--RVISVE 75 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g--~~l~V~ 75 (182)
...+|||+|| |+.++|++|+++|++||+|+.|.|. ++||||+|++.++|++||+.||++.|.+ ..|.|.
T Consensus 192 ~~~~lfV~nL-p~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 192 KDTNLYVTNL-PRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred ccceeEEeCC-CCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 4678999999 8999999999999999999998873 5899999999999999999999999866 689999
Q ss_pred EeecCCCC
Q 030155 76 YALKDDSE 83 (182)
Q Consensus 76 ~a~~~~~~ 83 (182)
+|+.....
T Consensus 271 ~a~~~~~~ 278 (346)
T TIGR01659 271 LAEEHGKA 278 (346)
T ss_pred ECCccccc
Confidence 98865443
No 11
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=3.3e-15 Score=119.02 Aligned_cols=76 Identities=30% Similarity=0.561 Sum_probs=70.5
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
.|-+||||+-| ++.|+|..|+..|.+||+|+.|.| ++|||||+|+.+.++..|.+..+|.+|+|+.|.|.+
T Consensus 99 DPy~TLFv~RL-nydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARL-NYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred Cccceeeeeec-cccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 56789999999 799999999999999999999988 489999999999999999999999999999999998
Q ss_pred eecCC
Q 030155 77 ALKDD 81 (182)
Q Consensus 77 a~~~~ 81 (182)
-....
T Consensus 178 ERgRT 182 (335)
T KOG0113|consen 178 ERGRT 182 (335)
T ss_pred ccccc
Confidence 76543
No 12
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=1.7e-16 Score=112.24 Aligned_cols=73 Identities=26% Similarity=0.472 Sum_probs=68.9
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
..+++|||||| ++-|+|++|.++|.++|+|..|.| +.|||||+|-..++|+.||+.++|+.|+.+.|.|.|
T Consensus 34 r~S~tvyVgNl-SfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNL-SFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeee-eeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 46889999999 889999999999999999999998 579999999999999999999999999999999998
Q ss_pred ee
Q 030155 77 AL 78 (182)
Q Consensus 77 a~ 78 (182)
..
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 75
No 13
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=1e-15 Score=109.32 Aligned_cols=76 Identities=25% Similarity=0.519 Sum_probs=69.9
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
.-.|||.++ ...++|++|.+.|..||+|+.|.| .+|||+|+|++.++|++||..|||..|.|+.|.|.|+.
T Consensus 72 GwIi~Vtgv-HeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 72 GWIIFVTGV-HEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eEEEEEecc-CcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 347999999 678999999999999999999998 48999999999999999999999999999999999998
Q ss_pred cCCCC
Q 030155 79 KDDSE 83 (182)
Q Consensus 79 ~~~~~ 83 (182)
-+...
T Consensus 151 v~gp~ 155 (170)
T KOG0130|consen 151 VKGPE 155 (170)
T ss_pred ecCCc
Confidence 76543
No 14
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.63 E-value=1.4e-15 Score=120.59 Aligned_cols=71 Identities=30% Similarity=0.462 Sum_probs=66.6
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE-----eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeec
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 79 (182)
.++|||+|| ++.+++++|+++|+.||+|..|.| .++||||+|.+.++|+.||. |||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNL-s~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNV-SLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 579999999 889999999999999999999999 36899999999999999996 999999999999999864
No 15
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.62 E-value=4.8e-16 Score=123.44 Aligned_cols=73 Identities=30% Similarity=0.499 Sum_probs=70.1
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecCC
Q 030155 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 81 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 81 (182)
-+|||||| |.++++++|+.+|++||+|++|.|.|.|+||..++.+.|+.||.+|||.+|+|..|+|+-++.+.
T Consensus 3 ~KLFIGNL-p~~~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNL-PREATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCC-CcccchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 47999999 89999999999999999999999999999999999999999999999999999999999998763
No 16
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=3.6e-15 Score=115.86 Aligned_cols=75 Identities=27% Similarity=0.515 Sum_probs=70.6
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
...++|-|.|| +.+++|++|+++|.+||.|..|.| .+|||||.|.+.++|++||..|||.-+++-.|.|+|
T Consensus 187 ~D~~tvRvtNL-sed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 187 DDEATVRVTNL-SEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CccceeEEecC-ccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 35778999999 899999999999999999999988 489999999999999999999999999999999999
Q ss_pred eecC
Q 030155 77 ALKD 80 (182)
Q Consensus 77 a~~~ 80 (182)
++++
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9875
No 17
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=1.6e-15 Score=122.15 Aligned_cols=75 Identities=33% Similarity=0.542 Sum_probs=70.1
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
....+.|+|.|| |+...+-||..+|++||.|.+|.| .|||+||+|++.++|++|-++|||..|.|++|+|..|
T Consensus 93 ~~~pkRLhVSNI-PFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNI-PFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecC-CccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 334678999999 999999999999999999999988 5999999999999999999999999999999999998
Q ss_pred ec
Q 030155 78 LK 79 (182)
Q Consensus 78 ~~ 79 (182)
..
T Consensus 172 Ta 173 (376)
T KOG0125|consen 172 TA 173 (376)
T ss_pred ch
Confidence 74
No 18
>PLN03213 repressor of silencing 3; Provisional
Probab=99.59 E-value=4.2e-15 Score=125.43 Aligned_cols=75 Identities=21% Similarity=0.276 Sum_probs=69.4
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe----CCEEEEEeCCH--HHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR----RNFAFVQFETQ--EEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~----~g~afV~f~~~--~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
.....+|||||| ++.+++++|..+|..||.|..|.|+ +|||||+|.+. .++++||..|||.++.|+.|+|+.|
T Consensus 7 ~~~gMRIYVGNL-SydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 7 GGGGVRLHVGGL-GESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred CCcceEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 345679999999 8999999999999999999999995 79999999987 7899999999999999999999999
Q ss_pred ec
Q 030155 78 LK 79 (182)
Q Consensus 78 ~~ 79 (182)
++
T Consensus 86 KP 87 (759)
T PLN03213 86 KE 87 (759)
T ss_pred cH
Confidence 84
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.58 E-value=1.1e-14 Score=126.52 Aligned_cols=76 Identities=21% Similarity=0.285 Sum_probs=69.9
Q ss_pred CCCCEEEEccCCCC-CCCHHHHHHhhccCCceEEEEEe---CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030155 5 RPTKTLFVINFDPI-RTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 5 ~~~~~l~V~nL~p~-~~~e~~L~~~F~~~G~i~~~~i~---~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
+++++|||+|| ++ .+++++|+++|++||.|..|.|+ +|||||+|.+.++|+.||..|||..|.|+.|.|.+++..
T Consensus 273 ~~~~~l~v~nL-~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 273 GPGSVLMVSGL-HQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCCEEEEeCC-CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 46789999999 65 69999999999999999999884 699999999999999999999999999999999998754
Q ss_pred C
Q 030155 81 D 81 (182)
Q Consensus 81 ~ 81 (182)
.
T Consensus 352 ~ 352 (481)
T TIGR01649 352 N 352 (481)
T ss_pred c
Confidence 3
No 20
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=3.8e-15 Score=124.12 Aligned_cols=78 Identities=33% Similarity=0.516 Sum_probs=73.5
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecCCCCC
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER 84 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 84 (182)
.-+.|||.|| +..|||+.|+++|++||.|..|+..+.||||.|.+.++|.+|++.|||++|+|..|.|.+|+++.++.
T Consensus 258 ~VKvLYVRNL-~~~tTeE~lk~~F~~~G~veRVkk~rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 258 KVKVLYVRNL-MESTTEETLKKLFNEFGKVERVKKPRDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred heeeeeeecc-chhhhHHHHHHHHHhccceEEeecccceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 4578999999 99999999999999999999999999999999999999999999999999999999999999876543
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.57 E-value=1.5e-14 Score=126.06 Aligned_cols=74 Identities=18% Similarity=0.381 Sum_probs=68.7
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
...+|||+|| |+.+++++|+++|++||.|..+.| .+|||||+|.+.++|+.||+.|||+.|.|..|.|.++
T Consensus 294 ~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 294 SKDRIYIGNL-PLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4579999999 899999999999999999998887 3689999999999999999999999999999999998
Q ss_pred ecC
Q 030155 78 LKD 80 (182)
Q Consensus 78 ~~~ 80 (182)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 754
No 22
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.57 E-value=1.3e-14 Score=93.61 Aligned_cols=63 Identities=35% Similarity=0.664 Sum_probs=56.7
Q ss_pred EEEccCCCCCCCHHHHHHhhccCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 030155 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (182)
Q Consensus 10 l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 73 (182)
|||+|| |+.+++++|.++|..||.|..+.+. +++|||+|.+.++|+.|++.+++..|.|+.|+
T Consensus 1 v~i~nl-p~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNL-PPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESS-TTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999 8899999999999999999999882 58999999999999999999999999999874
No 23
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=1.8e-14 Score=98.51 Aligned_cols=76 Identities=25% Similarity=0.433 Sum_probs=70.3
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE-----eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
++..+..|||.|| |+.+|.+++.++|.+||.|..|.| .+|-|||.|++..+|.+|+..|.|..+++..|.|-+-
T Consensus 14 ppevnriLyirNL-p~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 14 PPEVNRILYIRNL-PFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred ChhhheeEEEecC-CccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 4556889999999 999999999999999999999999 4899999999999999999999999999999999876
Q ss_pred ec
Q 030155 78 LK 79 (182)
Q Consensus 78 ~~ 79 (182)
.+
T Consensus 93 q~ 94 (124)
T KOG0114|consen 93 QP 94 (124)
T ss_pred CH
Confidence 54
No 24
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.6e-14 Score=113.79 Aligned_cols=79 Identities=23% Similarity=0.501 Sum_probs=72.8
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030155 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
..+.+++|||||| +..++|++|++.|..||.|.+|.| .+|||||.|++.|.|..||..||+.+|.|+.+++.|.+..
T Consensus 160 ssp~NtsVY~G~I-~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 160 SSPDNTSVYVGNI-ASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred CCCCCceEEeCCc-CccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 3467899999999 667999999999999999999998 5899999999999999999999999999999999999865
Q ss_pred CC
Q 030155 81 DS 82 (182)
Q Consensus 81 ~~ 82 (182)
..
T Consensus 239 ~~ 240 (321)
T KOG0148|consen 239 DD 240 (321)
T ss_pred CC
Confidence 54
No 25
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.56 E-value=1.7e-14 Score=127.16 Aligned_cols=76 Identities=17% Similarity=0.400 Sum_probs=70.0
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
...+|||+|| +..+++++|+++|++||+|+.|.| .+|||||+|.+.++|++||+.||+..|+|+.|+|.++
T Consensus 203 ~~~rLfVgnL-p~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 203 KFNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred ccceEEeecC-CCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 4579999999 789999999999999999999988 3789999999999999999999999999999999999
Q ss_pred ecCCC
Q 030155 78 LKDDS 82 (182)
Q Consensus 78 ~~~~~ 82 (182)
..+..
T Consensus 282 i~pP~ 286 (612)
T TIGR01645 282 VTPPD 286 (612)
T ss_pred CCCcc
Confidence 86543
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.56 E-value=2e-14 Score=123.85 Aligned_cols=73 Identities=34% Similarity=0.613 Sum_probs=68.2
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
...+|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||.+|.|+.|.|.|+
T Consensus 185 ~~~~l~v~nl-~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 185 NFLKLYVGNL-HFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCCEEEEcCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 3689999999 8899999999999999999999883 689999999999999999999999999999999998
Q ss_pred ec
Q 030155 78 LK 79 (182)
Q Consensus 78 ~~ 79 (182)
..
T Consensus 264 ~~ 265 (457)
T TIGR01622 264 QD 265 (457)
T ss_pred cC
Confidence 73
No 27
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.54 E-value=2.4e-14 Score=124.46 Aligned_cols=74 Identities=23% Similarity=0.342 Sum_probs=67.8
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--CCEEEEEeCCHHHHHHHHHhc--CCCccCCcEEEEEEeecC
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALEST--DRSKLVDRVISVEYALKD 80 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~V~~a~~~ 80 (182)
|+++|||+|| |+.+++++|+++|++||.|..|.|+ ++||||+|++.++|++||+.| ++..|.|+.|.|+|+..+
T Consensus 1 ps~vv~V~nL-p~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 1 PSPVVHVRNL-PQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred CccEEEEcCC-CCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 5789999999 8999999999999999999999884 689999999999999999864 778999999999998643
No 28
>smart00362 RRM_2 RNA recognition motif.
Probab=99.54 E-value=4.1e-14 Score=90.00 Aligned_cols=66 Identities=44% Similarity=0.710 Sum_probs=60.8
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEEe------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030155 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
+|||+|| |..+++++|+++|.+||.|..+.+. .++|||+|.+.++|+.|++.|++..|.|..|.|+
T Consensus 1 ~v~i~~l-~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNL-PPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCC-CCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999 8899999999999999999998873 3899999999999999999999999999998873
No 29
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.53 E-value=5.1e-14 Score=110.29 Aligned_cols=71 Identities=23% Similarity=0.261 Sum_probs=65.4
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-----CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-----~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
...+|||+|| ++.+++++|+++|+.||+|..|.|. .+||||+|.+.++|+.||. |+|..|.++.|.|....
T Consensus 4 ~g~TV~V~NL-S~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNL-SPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecC-CCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4579999999 7899999999999999999999994 5799999999999999995 99999999999998765
No 30
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1e-14 Score=112.06 Aligned_cols=77 Identities=30% Similarity=0.569 Sum_probs=72.0
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
..++||||+| ..+++|.-|...|-+||.|+.|.| .+|||||+|+..++|.+||..||+.+|.|+.|.|.+|
T Consensus 9 ~KrtlYVGGl-adeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGL-ADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccc-hHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 4679999999 899999999999999999999998 3899999999999999999999999999999999999
Q ss_pred ecCCCC
Q 030155 78 LKDDSE 83 (182)
Q Consensus 78 ~~~~~~ 83 (182)
++.+-+
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 987654
No 31
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.52 E-value=2.3e-14 Score=113.97 Aligned_cols=98 Identities=20% Similarity=0.390 Sum_probs=81.8
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecCCCCC
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER 84 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 84 (182)
..+++|+|||| ...++.++|.+.|++||+|.+|+|.++|+||.|+-.++|..||+.||+.+|.|+.|+|+++...-...
T Consensus 76 k~stkl~vgNi-s~tctn~ElRa~fe~ygpviecdivkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrta 154 (346)
T KOG0109|consen 76 KASTKLHVGNI-SPTCTNQELRAKFEKYGPVIECDIVKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTA 154 (346)
T ss_pred CCccccccCCC-CccccCHHHhhhhcccCCceeeeeecceeEEEEeeccchHHHHhcccccccccceeeeeeeccccccC
Confidence 46789999999 67899999999999999999999999999999999999999999999999999999999998665544
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 030155 85 DDRYDSPRRGGYGRHSPYG 103 (182)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ 103 (182)
++......+=..+..+.+.
T Consensus 155 pgmgDq~~cyrcGkeghws 173 (346)
T KOG0109|consen 155 PGMGDQSGCYRCGKEGHWS 173 (346)
T ss_pred CCCCCHHHheecccccccc
Confidence 4444444443344444443
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.52 E-value=4.5e-14 Score=124.41 Aligned_cols=73 Identities=30% Similarity=0.496 Sum_probs=67.6
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
...++|||+|| ++.+++++|+++|.+||+|..|.| .+|||||+|.+.++|+.||+.|||..|.|+.|+|.+
T Consensus 105 ~~~~rLfVGnL-p~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 105 AIMCRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCCEEEEcCC-CCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 35689999999 899999999999999999999988 489999999999999999999999999999999985
Q ss_pred ee
Q 030155 77 AL 78 (182)
Q Consensus 77 a~ 78 (182)
..
T Consensus 184 p~ 185 (612)
T TIGR01645 184 PS 185 (612)
T ss_pred cc
Confidence 43
No 33
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.51 E-value=6.2e-14 Score=123.88 Aligned_cols=76 Identities=22% Similarity=0.404 Sum_probs=70.1
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
....+|||+|| +..+++++|+++|++||.|+.|.| .+|||||+|.+.++|++||..|||..|.|+.|.|.+|
T Consensus 283 ~~~~~l~V~nl-~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNL-DDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCC-CCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 35678999999 789999999999999999999988 3689999999999999999999999999999999999
Q ss_pred ecCC
Q 030155 78 LKDD 81 (182)
Q Consensus 78 ~~~~ 81 (182)
..+.
T Consensus 362 ~~k~ 365 (562)
T TIGR01628 362 QRKE 365 (562)
T ss_pred cCcH
Confidence 8653
No 34
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=2.4e-14 Score=110.81 Aligned_cols=71 Identities=23% Similarity=0.425 Sum_probs=64.5
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
-++|||||| +|.|..++|.++|++||+|++..| .+||+||+|.+.+.|+.|++. .+-+|+|++..+.+|.
T Consensus 12 ~TKifVggL-~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGL-AWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCc-ccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 468999999 999999999999999999999877 489999999999999999985 5678899999999886
Q ss_pred c
Q 030155 79 K 79 (182)
Q Consensus 79 ~ 79 (182)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 35
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.50 E-value=9.4e-14 Score=119.69 Aligned_cols=73 Identities=32% Similarity=0.499 Sum_probs=67.1
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
.+..+|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++||. |+|..|.|..|.|++
T Consensus 87 ~~~~~l~V~nl-p~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 87 RDDRTVFVLQL-ALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred cCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 35789999999 8999999999999999999999883 6899999999999999996 899999999999988
Q ss_pred eec
Q 030155 77 ALK 79 (182)
Q Consensus 77 a~~ 79 (182)
+..
T Consensus 165 ~~~ 167 (457)
T TIGR01622 165 SQA 167 (457)
T ss_pred cch
Confidence 754
No 36
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.50 E-value=1.6e-13 Score=85.05 Aligned_cols=53 Identities=34% Similarity=0.644 Sum_probs=49.0
Q ss_pred HHHhhccCCceEEEEEe--C-CEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 25 IKRHFEPYGNVLHVRIR--R-NFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 25 L~~~F~~~G~i~~~~i~--~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
|.++|++||+|..+.+. + ++|||+|.+.++|+.|++.|||..|.|+.|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999984 3 99999999999999999999999999999999986
No 37
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.50 E-value=8e-14 Score=123.21 Aligned_cols=70 Identities=26% Similarity=0.525 Sum_probs=65.7
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeec
Q 030155 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 79 (182)
+|||+|| +.+++|++|.++|.+||+|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|+|.|+..
T Consensus 2 sl~VgnL-p~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDL-DPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 7999999 8899999999999999999999882 58999999999999999999999999999999999864
No 38
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.48 E-value=1.1e-13 Score=121.74 Aligned_cols=71 Identities=27% Similarity=0.418 Sum_probs=62.3
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccC-CcEEEEEE
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLV-DRVISVEY 76 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~-g~~l~V~~ 76 (182)
...++|||+|| |.+++|++|.++|++||.|..|.| .+|||||+|.+.++|++||+.||+.+|. |+.|.|.+
T Consensus 56 ~~~~~lFVgnL-p~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKI-PRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCC-CCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34689999999 899999999999999999999987 4789999999999999999999998874 56555543
No 39
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=4.9e-15 Score=110.66 Aligned_cols=74 Identities=23% Similarity=0.489 Sum_probs=68.9
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
..+..|||||| |+.+||.||..+|++||+|+.|.| .+||||+.|++..+...||..|||..|.|+.|+|.+
T Consensus 33 kdsA~Iyiggl-~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 33 KDSAYIYIGGL-PYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ccceEEEECCC-cccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 35678999999 899999999999999999999998 489999999999999999999999999999999998
Q ss_pred eec
Q 030155 77 ALK 79 (182)
Q Consensus 77 a~~ 79 (182)
...
T Consensus 112 v~~ 114 (219)
T KOG0126|consen 112 VSN 114 (219)
T ss_pred ccc
Confidence 753
No 40
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.47 E-value=3.5e-13 Score=86.10 Aligned_cols=67 Identities=45% Similarity=0.718 Sum_probs=62.0
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030155 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
+|+|+|| |..+++++|+++|+.||.|..+.+. .++|||+|.+.++|+.|++.|++..+.|..|.|.+
T Consensus 1 ~i~i~~l-~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNL-PPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCC-CCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999 8899999999999999999998883 58999999999999999999999999999999864
No 41
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.47 E-value=8.2e-14 Score=104.13 Aligned_cols=75 Identities=28% Similarity=0.403 Sum_probs=69.5
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030155 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
+.....+|||||| +..++++.|+++|-+.|+|+.+.| .+|||||+|.++++|+.||+.||..+|.|+.|+|
T Consensus 5 ~rnqd~tiyvgnl-d~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv 83 (203)
T KOG0131|consen 5 ERNQDATLYVGNL-DEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRV 83 (203)
T ss_pred ccCCCceEEEecC-CHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEE
Confidence 4456789999999 678999999999999999999998 3799999999999999999999999999999999
Q ss_pred EEee
Q 030155 75 EYAL 78 (182)
Q Consensus 75 ~~a~ 78 (182)
..+.
T Consensus 84 ~kas 87 (203)
T KOG0131|consen 84 NKAS 87 (203)
T ss_pred Eecc
Confidence 9887
No 42
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.46 E-value=3e-13 Score=106.54 Aligned_cols=72 Identities=40% Similarity=0.650 Sum_probs=67.4
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
..+|||+|| ++.+++++|.++|.+||.|..|.| .+|||||+|.+.++|+.||+.|++..|.|..|.|.++.
T Consensus 115 ~~~l~v~nL-~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNL-PYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCC-CCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 589999999 899999999999999999988877 37999999999999999999999999999999999975
Q ss_pred c
Q 030155 79 K 79 (182)
Q Consensus 79 ~ 79 (182)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 3
No 43
>smart00360 RRM RNA recognition motif.
Probab=99.45 E-value=3.3e-13 Score=85.37 Aligned_cols=63 Identities=37% Similarity=0.646 Sum_probs=57.8
Q ss_pred EccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030155 12 VINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 12 V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
|+|| |..+++++|+++|++||.|..+.+. +++|||+|.+.++|+.|++.|++..+.|..|.|+
T Consensus 1 i~~l-~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNL-PPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCC-CcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799 8899999999999999999999882 4799999999999999999999999999998873
No 44
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=9.6e-14 Score=115.42 Aligned_cols=78 Identities=23% Similarity=0.434 Sum_probs=69.8
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCc-c--CCcEEEE
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSK-L--VDRVISV 74 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~-~--~g~~l~V 74 (182)
....+||||.| +..++|.+|+++|.+||.|++|.| .+|||||.|.+.+.|..||+.|||.. + +..+|.|
T Consensus 122 ~~e~KLFvg~l-sK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGML-SKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhc-cccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 34778999999 789999999999999999999988 48999999999999999999999964 4 5579999
Q ss_pred EEeecCCCC
Q 030155 75 EYALKDDSE 83 (182)
Q Consensus 75 ~~a~~~~~~ 83 (182)
.||.+++.+
T Consensus 201 kFADtqkdk 209 (510)
T KOG0144|consen 201 KFADTQKDK 209 (510)
T ss_pred EecccCCCc
Confidence 999987764
No 45
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=7.2e-13 Score=113.04 Aligned_cols=76 Identities=34% Similarity=0.633 Sum_probs=70.9
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
+.-.|+|.|| ||.|.+.+|+.+|++||.|.+|.| ++|||||+|.+..+|..||+.||+.+|+|+.|-|.||.
T Consensus 116 ~k~rLIIRNL-Pf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNL-PFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecC-CcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 3568999999 999999999999999999999999 37999999999999999999999999999999999998
Q ss_pred cCCC
Q 030155 79 KDDS 82 (182)
Q Consensus 79 ~~~~ 82 (182)
.+..
T Consensus 195 ~Kd~ 198 (678)
T KOG0127|consen 195 DKDT 198 (678)
T ss_pred cccc
Confidence 7653
No 46
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=2.1e-12 Score=107.92 Aligned_cols=73 Identities=26% Similarity=0.455 Sum_probs=67.5
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCcc-CCcEEEEE
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKL-VDRVISVE 75 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~-~g~~l~V~ 75 (182)
+-.+-||||.| |.++.|++|.-+|++.|+|-++.| .+|||||+|.+.++|+.||+.||+++| .|+.|.|.
T Consensus 81 ~~G~EVfvGkI-PrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKI-PRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCceEEecCC-CccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 45789999999 999999999999999999999988 389999999999999999999999998 68888888
Q ss_pred Eee
Q 030155 76 YAL 78 (182)
Q Consensus 76 ~a~ 78 (182)
.+.
T Consensus 160 ~Sv 162 (506)
T KOG0117|consen 160 VSV 162 (506)
T ss_pred Eee
Confidence 776
No 47
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.36 E-value=2.2e-12 Score=99.52 Aligned_cols=80 Identities=26% Similarity=0.500 Sum_probs=72.2
Q ss_pred CCCCCCCEEEEccCCCCCCCHHHHHH----hhccCCceEEEEE-----eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEE
Q 030155 2 ANQRPTKTLFVINFDPIRTRERDIKR----HFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVDRVI 72 (182)
Q Consensus 2 ~~~~~~~~l~V~nL~p~~~~e~~L~~----~F~~~G~i~~~~i-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 72 (182)
.+.+++.||||-|| .+.+..++|+. +|++||.|..|.. ++|-|||.|.+.+.|-.|+.+|+|..|.|+.|
T Consensus 4 ~~~~pn~TlYInnL-nekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 4 MSVNPNGTLYINNL-NEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred cccCCCceEeehhc-cccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 45677779999999 68899988877 9999999999987 58999999999999999999999999999999
Q ss_pred EEEEeecCCC
Q 030155 73 SVEYALKDDS 82 (182)
Q Consensus 73 ~V~~a~~~~~ 82 (182)
+|++|+.+..
T Consensus 83 riqyA~s~sd 92 (221)
T KOG4206|consen 83 RIQYAKSDSD 92 (221)
T ss_pred heecccCccc
Confidence 9999986643
No 48
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.36 E-value=2.2e-12 Score=112.55 Aligned_cols=71 Identities=30% Similarity=0.437 Sum_probs=60.7
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccC------------CceEEEEE--eCCEEEEEeCCHHHHHHHHHhcCCCccCCc
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPY------------GNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDR 70 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~------------G~i~~~~i--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 70 (182)
....+|||||| |+.+++++|+++|.++ +.|..+.+ .++||||+|.+.++|+.|| +|||+.|.|.
T Consensus 173 ~~~r~lyVgnL-p~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g~ 250 (509)
T TIGR01642 173 RQARRLYVGGI-PPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIYSNV 250 (509)
T ss_pred ccccEEEEeCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEeeCc
Confidence 34679999999 8999999999999974 34555655 4789999999999999999 5999999999
Q ss_pred EEEEEEe
Q 030155 71 VISVEYA 77 (182)
Q Consensus 71 ~l~V~~a 77 (182)
.|+|...
T Consensus 251 ~l~v~r~ 257 (509)
T TIGR01642 251 FLKIRRP 257 (509)
T ss_pred eeEecCc
Confidence 9998644
No 49
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=9.6e-13 Score=102.04 Aligned_cols=73 Identities=30% Similarity=0.584 Sum_probs=69.1
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecCC
Q 030155 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 81 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 81 (182)
..||||+| |+.+.+.+|+.+|.+||.|..|.|+.+|+||+|++..+|+.||..||+.+|+|..+.|+++....
T Consensus 2 ~rv~vg~~-~~~~~~~d~E~~f~~yg~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRL-PYRARERDVERFFKGYGKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred Cceeeccc-CCccchhHHHHHHhhccccccceeecccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 47999999 89999999999999999999999999999999999999999999999999999999999988643
No 50
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1e-12 Score=107.19 Aligned_cols=76 Identities=26% Similarity=0.535 Sum_probs=69.0
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030155 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
.+|...|||+.||| .|+.++|+-||+.||.|..|.|. ..||||+|++.+++++|.-+|+++.|+.+.|+|.
T Consensus 236 ~PPeNVLFVCKLNP-VTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 236 KPPENVLFVCKLNP-VTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred CCCcceEEEEecCC-cccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 46788999999986 68889999999999999999883 4599999999999999999999999999999999
Q ss_pred EeecC
Q 030155 76 YALKD 80 (182)
Q Consensus 76 ~a~~~ 80 (182)
|+..-
T Consensus 315 FSQSV 319 (479)
T KOG0415|consen 315 FSQSV 319 (479)
T ss_pred hhhhh
Confidence 98643
No 51
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.35 E-value=3.1e-12 Score=108.92 Aligned_cols=74 Identities=27% Similarity=0.507 Sum_probs=69.9
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeec
Q 030155 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 79 (182)
..|||||| |+.+++++|..+|++.|.|..+.+ .+||||++|.+.++|+.||+.|||.++.|+.|+|.|+..
T Consensus 19 ~~v~vgni-p~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNI-PYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCC-CCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 89999999 999999999999999999999988 489999999999999999999999999999999999976
Q ss_pred CCC
Q 030155 80 DDS 82 (182)
Q Consensus 80 ~~~ 82 (182)
.+.
T Consensus 98 ~~~ 100 (435)
T KOG0108|consen 98 RKN 100 (435)
T ss_pred cch
Confidence 543
No 52
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=2.2e-12 Score=101.91 Aligned_cols=74 Identities=22% Similarity=0.478 Sum_probs=68.7
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
...|||+.| ...|+-++|++.|.+||+|.++.| .|||+||.|.+.++|+.||..|||.-|.++.|+..||.
T Consensus 62 hfhvfvgdl-s~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 62 HFHVFVGDL-SPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred ceeEEehhc-chhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 346899999 678999999999999999999988 48999999999999999999999999999999999998
Q ss_pred cCC
Q 030155 79 KDD 81 (182)
Q Consensus 79 ~~~ 81 (182)
.+.
T Consensus 141 RKp 143 (321)
T KOG0148|consen 141 RKP 143 (321)
T ss_pred cCc
Confidence 765
No 53
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.33 E-value=2.9e-12 Score=112.96 Aligned_cols=75 Identities=27% Similarity=0.539 Sum_probs=70.7
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecCCC
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 82 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 82 (182)
++|||||+| +.+++|+||..+|+.||+|..|.| +++||||.+....+|++||.+|.++.|.+..|+|.||..+..
T Consensus 421 SrTLwvG~i-~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 421 SRTLWVGGI-PKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeeeccc-cchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 579999999 899999999999999999999988 689999999999999999999999999999999999986554
No 54
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=3.7e-12 Score=100.61 Aligned_cols=80 Identities=18% Similarity=0.431 Sum_probs=72.5
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030155 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
+-++.|+|||-.| |.+....||..+|-.||.|+..++ .|+|+||.|+++.+|+.||.+|||.+|.-+.|+|
T Consensus 281 eGPeGCNlFIYHL-PQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 281 EGPEGCNLFIYHL-PQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred cCCCcceEEEEeC-chhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 3467899999999 899999999999999999987766 5899999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 030155 75 EYALKDDSE 83 (182)
Q Consensus 75 ~~a~~~~~~ 83 (182)
++..++...
T Consensus 360 QLKRPkdan 368 (371)
T KOG0146|consen 360 QLKRPKDAN 368 (371)
T ss_pred hhcCccccC
Confidence 998776543
No 55
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.28 E-value=1.1e-11 Score=103.65 Aligned_cols=72 Identities=28% Similarity=0.424 Sum_probs=66.1
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhc-cCCceEEEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFE-PYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~-~~G~i~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
.+.|||.|| |+++.|++|+++|. +.|+|+.|.| .+|||+|||+++|.+++|++.||.+.+.|++|.|+...
T Consensus 44 ~R~vfItNI-pyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNI-PYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecC-cchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 456999999 99999999999996 6899999998 58999999999999999999999999999999998765
Q ss_pred c
Q 030155 79 K 79 (182)
Q Consensus 79 ~ 79 (182)
.
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 3
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=1.1e-11 Score=105.99 Aligned_cols=77 Identities=35% Similarity=0.537 Sum_probs=67.9
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhc-----CC-CccCC
Q 030155 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALEST-----DR-SKLVD 69 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l-----~g-~~~~g 69 (182)
.....+|||.|| |+++++++|.++|.+||+|..+.| .+|+|||.|.+..+|++||++. .| ..|.|
T Consensus 289 ~~~~~tVFvRNL-~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 289 ITEGKTVFVRNL-PFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred ccccceEEEecC-CccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 345689999999 999999999999999999998877 4899999999999999999876 23 67899
Q ss_pred cEEEEEEeecCC
Q 030155 70 RVISVEYALKDD 81 (182)
Q Consensus 70 ~~l~V~~a~~~~ 81 (182)
+.|.|..|....
T Consensus 368 R~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 368 RLLKVTLAVTRK 379 (678)
T ss_pred cEEeeeeccchH
Confidence 999999987543
No 57
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=7.7e-12 Score=104.21 Aligned_cols=76 Identities=29% Similarity=0.539 Sum_probs=66.7
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCcc---CCcEEE
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKL---VDRVIS 73 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~ 73 (182)
...-+||||-| |..++|.||+.+|++||.|.+|.| .+|||||.|.+.++|.+|+.+||+.+. ....|.
T Consensus 32 ~~~vKlfVgqI-prt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 32 GSAVKLFVGQI-PRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred chhhhheeccC-CccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 44668999999 899999999999999999999988 379999999999999999999998654 347889
Q ss_pred EEEeecCC
Q 030155 74 VEYALKDD 81 (182)
Q Consensus 74 V~~a~~~~ 81 (182)
|.+|....
T Consensus 111 vk~Ad~E~ 118 (510)
T KOG0144|consen 111 VKYADGER 118 (510)
T ss_pred ecccchhh
Confidence 98887544
No 58
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=2.6e-11 Score=95.52 Aligned_cols=74 Identities=28% Similarity=0.476 Sum_probs=67.4
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
..-+|||-|| ..++.|.-|+++|.+||.|..|+| .+||+||.+.+.++|..||..|||..+.++.|.|.|.
T Consensus 277 ~g~ciFvYNL-spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 277 GGWCIFVYNL-SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CeeEEEEEec-CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 3568999999 668999999999999999999988 3899999999999999999999999999999999986
Q ss_pred ecC
Q 030155 78 LKD 80 (182)
Q Consensus 78 ~~~ 80 (182)
..+
T Consensus 356 tnk 358 (360)
T KOG0145|consen 356 TNK 358 (360)
T ss_pred cCC
Confidence 543
No 59
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=2.7e-11 Score=95.38 Aligned_cols=77 Identities=19% Similarity=0.427 Sum_probs=69.8
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
...+.|+|--| |.++|+++|+.+|...|+|+.|+| .-||+||.|.++++|++||..|||..+..+.|+|.+
T Consensus 39 ~skTNLIvNYL-PQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 39 ESKTNLIVNYL-PQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred cccceeeeeec-ccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34567888788 999999999999999999999998 358999999999999999999999999999999999
Q ss_pred eecCCC
Q 030155 77 ALKDDS 82 (182)
Q Consensus 77 a~~~~~ 82 (182)
|.+...
T Consensus 118 ARPSs~ 123 (360)
T KOG0145|consen 118 ARPSSD 123 (360)
T ss_pred ccCChh
Confidence 987643
No 60
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=3.1e-11 Score=98.20 Aligned_cols=75 Identities=31% Similarity=0.529 Sum_probs=65.8
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCCHHHHHHHHHhc-CCCccCCcEEEEEEeec
Q 030155 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALEST-DRSKLVDRVISVEYALK 79 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~~~~a~~Ai~~l-~g~~~~g~~l~V~~a~~ 79 (182)
+...++|||++|. ..++|++|.++|.+||+|..|.+ .++||||+|.+.++|+.|.+.+ +...|+|..|.|.|..+
T Consensus 225 D~~I~tLyIg~l~-d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 225 DTSIKTLYIGGLN-DEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ccceeEEEecccc-cchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 4456799999994 58999999999999999999988 4789999999999999887655 55677999999999987
No 61
>smart00361 RRM_1 RNA recognition motif.
Probab=99.22 E-value=3.4e-11 Score=78.05 Aligned_cols=53 Identities=25% Similarity=0.523 Sum_probs=47.5
Q ss_pred HHHHHHhhc----cCCceEEEE-E----------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030155 22 ERDIKRHFE----PYGNVLHVR-I----------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 22 e~~L~~~F~----~~G~i~~~~-i----------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
+++|+++|. +||.|..|. | .+|||||+|.+.++|++|++.|||..|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999884 3 2789999999999999999999999999999876
No 62
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.22 E-value=1.7e-11 Score=104.68 Aligned_cols=71 Identities=31% Similarity=0.565 Sum_probs=65.6
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030155 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
.|||||| ..++++++|..+|+.||.|..|.+ .+||+||+|.+.++|.+|++.|||.+|.|+.|+|.+....
T Consensus 280 rl~vgnL-HfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 280 RLYVGNL-HFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhccc-ccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 3899999 789999999999999999999988 3899999999999999999999999999999999886643
No 63
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=1.3e-11 Score=101.25 Aligned_cols=69 Identities=32% Similarity=0.548 Sum_probs=65.2
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
-+.||||.| .+++.|+.|+..|..||+|+.|.| .+|||||+|+-++.|+.|++.|||..+.|+.|+|..
T Consensus 113 McRvYVGSI-sfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeee-EEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 468999999 899999999999999999999998 489999999999999999999999999999999974
No 64
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.16 E-value=8.8e-11 Score=87.99 Aligned_cols=80 Identities=29% Similarity=0.529 Sum_probs=69.5
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEE-EE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030155 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV-RI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~-~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
...+.+|||+||+| .++|..|.++|+.||.|... .| +++|+||.|.+.+.+.+||..|||..+++++|.|
T Consensus 93 l~vganlfvgNLd~-~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv 171 (203)
T KOG0131|consen 93 LDVGANLFVGNLDP-EVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITV 171 (203)
T ss_pred ccccccccccccCc-chhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEE
Confidence 34568899999965 89999999999999987652 22 4789999999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 030155 75 EYALKDDSER 84 (182)
Q Consensus 75 ~~a~~~~~~~ 84 (182)
.+++.+..++
T Consensus 172 ~ya~k~~~kg 181 (203)
T KOG0131|consen 172 SYAFKKDTKG 181 (203)
T ss_pred EEEEecCCCc
Confidence 9999876554
No 65
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=9.8e-11 Score=102.63 Aligned_cols=68 Identities=29% Similarity=0.455 Sum_probs=64.7
Q ss_pred EEEccCCCCCCCHHHHHHhhccCCceEEEEEe-----------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030155 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 10 l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-----------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
|||.|| .+.++.++|+.+|.+.|.|..+.|. .|||||+|.+.++|+.|++.|+|+.|+|+.|.|+++.
T Consensus 518 lfvkNl-nf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 518 LFVKNL-NFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhcC-CcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 999999 7999999999999999999999882 3999999999999999999999999999999999998
No 66
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.13 E-value=5.6e-10 Score=94.73 Aligned_cols=72 Identities=24% Similarity=0.408 Sum_probs=63.5
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
..+|||.|| |.++++.+|+++|.+||+|+...|. .+||||+|.+.++++.||++ +-..|++++|.|+.-+
T Consensus 288 ~~~i~V~nl-P~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNL-PPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecC-CCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 456999999 8999999999999999999987761 27999999999999999986 6788899999999876
Q ss_pred cC
Q 030155 79 KD 80 (182)
Q Consensus 79 ~~ 80 (182)
..
T Consensus 366 ~~ 367 (419)
T KOG0116|consen 366 PG 367 (419)
T ss_pred cc
Confidence 53
No 67
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=1.1e-10 Score=90.63 Aligned_cols=68 Identities=49% Similarity=0.676 Sum_probs=63.1
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
..+.|+|.|| +..+.|++|.++|.++|++....+..+++||+|+..++|..||..|++.++.++.|.+
T Consensus 98 s~~r~~~~~~-~~r~~~qdl~d~~~~~g~~~~~~~~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 98 THFRLIVRNL-SLRVSWQDLKDHFRPAGEVTYVDARRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccceeeeccc-hhhhhHHHHhhhhcccCCCchhhhhccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 3567889999 7889999999999999999777778999999999999999999999999999999999
No 68
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.8e-10 Score=96.96 Aligned_cols=76 Identities=26% Similarity=0.489 Sum_probs=67.6
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
.....|||.|| +..++..+|.++|+.||+|+.|.| .+|| ||+|+++++|++||+.|||..+.+..|.|....
T Consensus 74 rd~~~~~i~nl-~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 74 RDPSLVFIKNL-DESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred cCCceeeecCC-CcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 33444999999 568999999999999999999998 4789 999999999999999999999999999998887
Q ss_pred cCCC
Q 030155 79 KDDS 82 (182)
Q Consensus 79 ~~~~ 82 (182)
.+..
T Consensus 152 ~~~e 155 (369)
T KOG0123|consen 152 RKEE 155 (369)
T ss_pred chhh
Confidence 5543
No 69
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.12 E-value=1.1e-10 Score=100.38 Aligned_cols=74 Identities=36% Similarity=0.586 Sum_probs=66.9
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
..+|||.+| ...|...+|+.||++||.|+-..| .++|+||+|.+.++|.+||..||.++|.|+.|.|+.++
T Consensus 405 gRNlWVSGL-SstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGL-SSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ccceeeecc-ccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 568999999 667778999999999999988776 36899999999999999999999999999999999998
Q ss_pred cCC
Q 030155 79 KDD 81 (182)
Q Consensus 79 ~~~ 81 (182)
...
T Consensus 484 NEp 486 (940)
T KOG4661|consen 484 NEP 486 (940)
T ss_pred cCc
Confidence 544
No 70
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=7.8e-11 Score=93.18 Aligned_cols=76 Identities=28% Similarity=0.520 Sum_probs=66.3
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCc-cCC--cEEEEE
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSK-LVD--RVISVE 75 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g--~~l~V~ 75 (182)
..++||||.| ...-.|+|+..+|..||+|.+|.+ .||||||.|.+..+|+.||..|||.. +-| ..|.|+
T Consensus 18 ~drklfvgml-~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGML-NKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhh-cccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 5689999999 578899999999999999999988 48999999999999999999999965 434 578999
Q ss_pred EeecCCC
Q 030155 76 YALKDDS 82 (182)
Q Consensus 76 ~a~~~~~ 82 (182)
++...++
T Consensus 97 ~ADTdkE 103 (371)
T KOG0146|consen 97 FADTDKE 103 (371)
T ss_pred eccchHH
Confidence 9876543
No 71
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.07 E-value=9.4e-10 Score=85.04 Aligned_cols=79 Identities=19% Similarity=0.347 Sum_probs=67.1
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE---------eCCEEEEEeCCHHHHHHHHHhcCCCcc---CCcEE
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---------RRNFAFVQFETQEEATKALESTDRSKL---VDRVI 72 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i---------~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l 72 (182)
..-+||||.+| |.++...+|..+|..|-..+.+.| .+.+|||+|.+.++|++|++.|||+.| .+..|
T Consensus 32 ~~VRTLFVSGL-P~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGL-PNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccC-CcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 44789999999 999999999999999865555544 146999999999999999999999998 58899
Q ss_pred EEEEeecCCCCC
Q 030155 73 SVEYALKDDSER 84 (182)
Q Consensus 73 ~V~~a~~~~~~~ 84 (182)
+|++|+...+..
T Consensus 111 hiElAKSNtK~k 122 (284)
T KOG1457|consen 111 HIELAKSNTKRK 122 (284)
T ss_pred EeeehhcCcccc
Confidence 999998765443
No 72
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.06 E-value=2.9e-10 Score=95.15 Aligned_cols=73 Identities=26% Similarity=0.374 Sum_probs=65.9
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe---CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~---~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
....++|||.|| |.++||+.|++-|..||.|..+.|+ +..+.|.|.++++|+.|+..|+|..|.|+.|.|.++
T Consensus 533 arKa~qIiirNl-P~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 533 ARKACQIIIRNL-PFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccccEEEEecC-CccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 346788999999 9999999999999999999998883 345689999999999999999999999999999873
No 73
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.99 E-value=1.9e-09 Score=85.36 Aligned_cols=75 Identities=21% Similarity=0.344 Sum_probs=67.7
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
...+|+|.|| ++.|+++||+++|..||+++.+.| ..|.|-|.|...++|+.||+.|||+.++|..|+|++..
T Consensus 82 ~~~~v~v~NL-~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNL-PYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecC-CcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 3478999999 899999999999999998888877 36899999999999999999999999999999999876
Q ss_pred cCC
Q 030155 79 KDD 81 (182)
Q Consensus 79 ~~~ 81 (182)
...
T Consensus 161 ~~~ 163 (243)
T KOG0533|consen 161 SPS 163 (243)
T ss_pred Ccc
Confidence 543
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=4.1e-10 Score=98.83 Aligned_cols=74 Identities=30% Similarity=0.593 Sum_probs=69.2
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
..++|+|.|| |+.++..+|+++|..||.|..|.|+ +|||||+|-++.+|..|+.+|..+-|.|+.|.++||
T Consensus 612 ~~tKIlVRNi-pFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 612 KGTKILVRNI-PFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred ccceeeeecc-chHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 4679999999 9999999999999999999999983 789999999999999999999999999999999999
Q ss_pred ecC
Q 030155 78 LKD 80 (182)
Q Consensus 78 ~~~ 80 (182)
+..
T Consensus 691 ~~d 693 (725)
T KOG0110|consen 691 KSD 693 (725)
T ss_pred ccc
Confidence 843
No 75
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=1.6e-10 Score=89.00 Aligned_cols=76 Identities=21% Similarity=0.212 Sum_probs=68.2
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030155 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
..+...+|||+|| ...++|+-|.++|.+.|+|..|.|+ ..||||+|.++..+..|++.|||..+.+..|+|++
T Consensus 5 aae~drtl~v~n~-~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 5 AAEMDRTLLVQNM-YSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred CcchhhHHHHHhh-hhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccc
Confidence 4456789999999 7899999999999999999999993 34999999999999999999999999999999887
Q ss_pred eec
Q 030155 77 ALK 79 (182)
Q Consensus 77 a~~ 79 (182)
-..
T Consensus 84 r~G 86 (267)
T KOG4454|consen 84 RCG 86 (267)
T ss_pred ccC
Confidence 653
No 76
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=1.8e-09 Score=88.79 Aligned_cols=74 Identities=18% Similarity=0.411 Sum_probs=67.5
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
-..|||..+ ..+.+|+||+.+|+.||+|+.|.| .+||+||+|.+.+....||..||-..|.|+.|+|-.+.
T Consensus 210 fnRiYVaSv-HpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 210 FNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hheEEeeec-CCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 468999999 458999999999999999999999 48999999999999999999999999999999998876
Q ss_pred cCC
Q 030155 79 KDD 81 (182)
Q Consensus 79 ~~~ 81 (182)
.++
T Consensus 289 TPP 291 (544)
T KOG0124|consen 289 TPP 291 (544)
T ss_pred CCC
Confidence 544
No 77
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.91 E-value=2.1e-09 Score=94.46 Aligned_cols=76 Identities=24% Similarity=0.378 Sum_probs=69.1
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-----------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEE
Q 030155 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----------RNFAFVQFETQEEATKALESTDRSKLVDRVI 72 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-----------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 72 (182)
.+.+++|||+||+ ..++++.|...|..||+|..|.|+ ..|+||.|.+..+|+.|++.|+|..+.+..|
T Consensus 171 DP~TTNlyv~Nln-psv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNLN-PSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecCC-ccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 5668899999995 579999999999999999999883 5799999999999999999999999999999
Q ss_pred EEEEeecC
Q 030155 73 SVEYALKD 80 (182)
Q Consensus 73 ~V~~a~~~ 80 (182)
++-|++.-
T Consensus 250 K~gWgk~V 257 (877)
T KOG0151|consen 250 KLGWGKAV 257 (877)
T ss_pred eecccccc
Confidence 99999643
No 78
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.91 E-value=5.3e-09 Score=79.90 Aligned_cols=75 Identities=24% Similarity=0.422 Sum_probs=66.3
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccC-CceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPY-GNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~-G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
.....+||..| |..+.+.+|..+|.+| |.|..+.| .+|||||+|++.+.|+-|.+.||+..|.++.|.|.
T Consensus 47 ~~~g~~~~~~~-p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 47 EIEGVVYVDHI-PHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred CCccceeeccc-ccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 44567899999 8899999999999998 67777777 48999999999999999999999999999999998
Q ss_pred EeecC
Q 030155 76 YALKD 80 (182)
Q Consensus 76 ~a~~~ 80 (182)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87654
No 79
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=1.1e-09 Score=93.97 Aligned_cols=69 Identities=28% Similarity=0.512 Sum_probs=63.8
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE---eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 030155 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i---~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 73 (182)
.-+..+|+|-|| |..|++++|..+|+.||+|..|.. ..+.+||+|-++.+|+.|+++|++.+|.|+.|+
T Consensus 72 ~~~~~~L~v~nl-~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNL-PRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEec-CCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 446789999999 789999999999999999999876 589999999999999999999999999999887
No 80
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.88 E-value=2.1e-09 Score=88.19 Aligned_cols=76 Identities=25% Similarity=0.429 Sum_probs=67.1
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030155 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
....++||||+| .|.++++.|.+.|.+||+|.+|.++ ++|+||+|++.+.+..+|. ...+.|+|+.|.++
T Consensus 3 ~~~~~KlfiGgi-sw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 3 SGESGKLFIGGL-SWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPK 80 (311)
T ss_pred ccCCcceeecCc-CccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccce
Confidence 347889999999 8999999999999999999999985 4999999999999888886 46688899999998
Q ss_pred EeecCC
Q 030155 76 YALKDD 81 (182)
Q Consensus 76 ~a~~~~ 81 (182)
.|.+..
T Consensus 81 ~av~r~ 86 (311)
T KOG4205|consen 81 RAVSRE 86 (311)
T ss_pred eccCcc
Confidence 887665
No 81
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.86 E-value=9.9e-09 Score=85.42 Aligned_cols=75 Identities=23% Similarity=0.359 Sum_probs=70.2
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE---eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecCC
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 81 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i---~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 81 (182)
+..|.|.||+++.+|.+.|..+|.-||.|..|.| ++.-|+|+|.+...|+.|++.|+|..|.|+.|+|.+++-..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 6889999999999999999999999999999998 46789999999999999999999999999999999998654
No 82
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.84 E-value=9.5e-09 Score=83.87 Aligned_cols=77 Identities=16% Similarity=0.272 Sum_probs=67.9
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEE--------EEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccC
Q 030155 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH--------VRI-------RRNFAFVQFETQEEATKALESTDRSKLV 68 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~--------~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 68 (182)
+..++.|||.|| |..+|.+++.++|+++|.|.. |.| .+|-|+|.|...++++.||+.|++..|.
T Consensus 131 ~~~Nt~VYVsgL-P~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGL-PLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCC-CCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 445778999999 899999999999999998754 344 4789999999999999999999999999
Q ss_pred CcEEEEEEeecCC
Q 030155 69 DRVISVEYALKDD 81 (182)
Q Consensus 69 g~~l~V~~a~~~~ 81 (182)
|..|+|+.|+-+.
T Consensus 210 g~~~rVerAkfq~ 222 (382)
T KOG1548|consen 210 GKKLRVERAKFQM 222 (382)
T ss_pred CcEEEEehhhhhh
Confidence 9999999998543
No 83
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.81 E-value=4.9e-09 Score=86.02 Aligned_cols=76 Identities=30% Similarity=0.487 Sum_probs=67.9
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
.+.+|||++| |..+++++|++.|.+||.|..+.+ .++|+||+|.+++.+++++. +.-+.|++..+.|..|
T Consensus 96 ~tkkiFvGG~-~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 96 RTKKIFVGGL-PPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRA 173 (311)
T ss_pred ceeEEEecCc-CCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeec
Confidence 3569999999 889999999999999998888776 48999999999999999986 6889999999999999
Q ss_pred ecCCCC
Q 030155 78 LKDDSE 83 (182)
Q Consensus 78 ~~~~~~ 83 (182)
.++...
T Consensus 174 ~pk~~~ 179 (311)
T KOG4205|consen 174 IPKEVM 179 (311)
T ss_pred cchhhc
Confidence 987654
No 84
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=2.4e-08 Score=84.16 Aligned_cols=69 Identities=26% Similarity=0.484 Sum_probs=63.0
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEE-----eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030155 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
..|||| ..+|+.+|.++|+++|+|..+.| .-|||||.|.++++|+.||..||...|.|+.|.|.|+...
T Consensus 2 ~sl~vg----~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG----PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC----CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468998 37999999999999999999888 3689999999999999999999999999999999998754
No 85
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.73 E-value=6.5e-08 Score=64.01 Aligned_cols=70 Identities=26% Similarity=0.403 Sum_probs=49.3
Q ss_pred CEEEEccCCCCCCCHH----HHHHhhccCC-ceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030155 8 KTLFVINFDPIRTRER----DIKRHFEPYG-NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~----~L~~~F~~~G-~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
..|||.|| |.+.... -|+.++..+| .|..| ..+.|+|-|.+.+.|+.|++.|+|..+.|..|.|.+....
T Consensus 3 s~L~V~NL-P~~~d~~~I~~RL~qLsdNCGGkVl~v--~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNL-PTNKDPSSIKNRLRQLSDNCGGKVLSV--SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES---TTS-HHHHHHHHHHHHHTTT--EEE----TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecC-CCCCCHHHHHHHHHHHhhccCCEEEEE--eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 36899999 8877764 4677888887 66665 5899999999999999999999999999999999998544
No 86
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.70 E-value=3.2e-08 Score=78.26 Aligned_cols=74 Identities=24% Similarity=0.378 Sum_probs=66.1
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
.....|||+|+ -..++.++|+.+|+.||.|..+.| +++||||+|.+.+.++.|++ ||+..|.|..|.|.+
T Consensus 99 ~d~~sv~v~nv-d~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 99 VDAPSVWVGNV-DFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred cCCceEEEecc-ccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 45778999999 477888889999999999987766 47899999999999999998 999999999999998
Q ss_pred eecC
Q 030155 77 ALKD 80 (182)
Q Consensus 77 a~~~ 80 (182)
....
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 8765
No 87
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.58 E-value=3.4e-07 Score=62.84 Aligned_cols=73 Identities=18% Similarity=0.314 Sum_probs=59.9
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccC--CceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccC----CcEEE
Q 030155 8 KTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLV----DRVIS 73 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~--G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~ 73 (182)
+||.|.|| |...+.++|.+++... |..-.+-| ..|||||.|.+++.|....+.++|..+. .+.+.
T Consensus 2 TTvMirNI-Pn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNI-PNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecC-CCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 68999999 9999999999888753 44444444 3799999999999999999999998874 56788
Q ss_pred EEEeecCC
Q 030155 74 VEYALKDD 81 (182)
Q Consensus 74 V~~a~~~~ 81 (182)
|.+|+-+.
T Consensus 81 i~yAriQG 88 (97)
T PF04059_consen 81 ISYARIQG 88 (97)
T ss_pred EehhHhhC
Confidence 88887653
No 88
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.57 E-value=3.5e-07 Score=75.67 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=70.7
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe---CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeec
Q 030155 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~---~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 79 (182)
...+.+.++|-+|+...++.+.|..+|..||.|..|+++ .|-|+||+.+..+.+.||..||+..+.|.+|.|.+++.
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 356788999999987788899999999999999999884 68999999999999999999999999999999999874
Q ss_pred C
Q 030155 80 D 80 (182)
Q Consensus 80 ~ 80 (182)
.
T Consensus 363 ~ 363 (494)
T KOG1456|consen 363 N 363 (494)
T ss_pred c
Confidence 3
No 89
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.57 E-value=1.9e-07 Score=65.21 Aligned_cols=69 Identities=30% Similarity=0.401 Sum_probs=45.0
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCC--EEEEEeCCHHHHHHHHHhcCC-----CccCCcEEEEEEe
Q 030155 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--FAFVQFETQEEATKALESTDR-----SKLVDRVISVEYA 77 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g--~afV~f~~~~~a~~Ai~~l~g-----~~~~g~~l~V~~a 77 (182)
+.|+|.++ ...++.++|+++|.+||.|..|.+.+| .|||-|.+.+.|+.|+..+.- ..|.+..+.+++-
T Consensus 2 ~il~~~g~-~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 2 CILKFSGL-GEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp -EEEEEE---SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred eEEEEecC-CCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 57889999 678999999999999999999999765 799999999999999886643 4567777776654
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.56 E-value=2.6e-07 Score=78.60 Aligned_cols=74 Identities=26% Similarity=0.362 Sum_probs=61.9
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
......|-+.+| ||.+|++||.+||+.++ |..+.+ ..|-|||+|++++++++||+ +|-..+..+-|.|-.+
T Consensus 7 ~~~~~~vr~rGL-Pwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 7 GSTAFEVRLRGL-PWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CCcceEEEecCC-CccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 344556777899 99999999999999986 677666 36899999999999999998 5888889999998777
Q ss_pred ecC
Q 030155 78 LKD 80 (182)
Q Consensus 78 ~~~ 80 (182)
...
T Consensus 84 ~~~ 86 (510)
T KOG4211|consen 84 GGA 86 (510)
T ss_pred CCc
Confidence 533
No 91
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.55 E-value=3e-07 Score=71.29 Aligned_cols=74 Identities=23% Similarity=0.469 Sum_probs=66.1
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE---eCCEEEEEeCCHHHHHHHHHhcCCCccC-CcEEEEEEee
Q 030155 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLV-DRVISVEYAL 78 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i---~~g~afV~f~~~~~a~~Ai~~l~g~~~~-g~~l~V~~a~ 78 (182)
.+++.+||+.|| |.+++.+.|..+|.+|....+|.+ ..+.|||+|.+...|..|...|++..|. ...|.|.+++
T Consensus 143 ~ppn~ilf~~ni-P~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 143 APPNNILFLTNI-PSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred CCCceEEEEecC-CcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 467889999999 899999999999999988888877 4789999999999999999999998885 8889988875
No 92
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.53 E-value=1.9e-07 Score=76.64 Aligned_cols=79 Identities=24% Similarity=0.309 Sum_probs=68.8
Q ss_pred CCCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEE--------EEE--------eCCEEEEEeCCHHHHHHHHHhcCCC
Q 030155 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH--------VRI--------RRNFAFVQFETQEEATKALESTDRS 65 (182)
Q Consensus 2 ~~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~--------~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~ 65 (182)
+......+|||-+| +..+++++|.++|.++|.|.. |+| .|+-|.|.|++...|+.||..+++.
T Consensus 61 ~~~s~~~ti~v~g~-~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 61 ADKSDNETIFVWGC-PDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred ccccccccceeecc-CccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccc
Confidence 34556789999999 899999999999999998753 233 4889999999999999999999999
Q ss_pred ccCCcEEEEEEeecCC
Q 030155 66 KLVDRVISVEYALKDD 81 (182)
Q Consensus 66 ~~~g~~l~V~~a~~~~ 81 (182)
.|++..|+|.+|....
T Consensus 140 df~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 140 DFCGNTIKVSLAERRT 155 (351)
T ss_pred cccCCCchhhhhhhcc
Confidence 9999999999998665
No 93
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.46 E-value=1.2e-07 Score=73.54 Aligned_cols=61 Identities=30% Similarity=0.439 Sum_probs=52.2
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--e--CCEEEEEeCCHHHHHHHHHhcCCCcc
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--R--RNFAFVQFETQEEATKALESTDRSKL 67 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~--~g~afV~f~~~~~a~~Ai~~l~g~~~ 67 (182)
.+.+|||.|| ..+++|++|+.+|+.|-....+.| . -..|||+|++.+.|.+|+..|+|..|
T Consensus 209 acstlfianl-~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIANL-GPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhcc-CCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 4678999999 669999999999999976666666 2 24799999999999999999999876
No 94
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.36 E-value=3e-07 Score=79.44 Aligned_cols=75 Identities=20% Similarity=0.422 Sum_probs=67.7
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
....|||+|| |..+++.++.+++..||.+....+ .+||||.+|.+......|+..|||+.+.+.+|.|+.|
T Consensus 288 ~~~ki~v~~l-p~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 288 SPNKIFVGGL-PLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred ccchhhhccC-cCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 4678999999 999999999999999998877665 4899999999999999999999999999999999998
Q ss_pred ecCC
Q 030155 78 LKDD 81 (182)
Q Consensus 78 ~~~~ 81 (182)
....
T Consensus 367 ~~g~ 370 (500)
T KOG0120|consen 367 IVGA 370 (500)
T ss_pred hccc
Confidence 7543
No 95
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.33 E-value=5.7e-06 Score=62.67 Aligned_cols=62 Identities=21% Similarity=0.340 Sum_probs=56.2
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE-eCCEEEEEeCCHHHHHHHHHhcCCCccCC
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-RRNFAFVQFETQEEATKALESTDRSKLVD 69 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i-~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 69 (182)
...|+|.+| |...+|++|++++.+.|.|+...+ .-++++|+|...++++.||.+|+..++..
T Consensus 115 e~RVvVsGL-p~SgSWQDLKDHmReaGdvCfadv~rDg~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 115 EYRVVVSGL-PPSGSWQDLKDHMREAGDVCFADVQRDGVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred ceeEEEecC-CCCCchHHHHHHHHhhCCeeeeeeecccceeeeeeehhhHHHHHHhhccccccC
Confidence 457999999 788999999999999999999988 46899999999999999999999987743
No 96
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.33 E-value=2.9e-06 Score=70.33 Aligned_cols=78 Identities=23% Similarity=0.353 Sum_probs=64.6
Q ss_pred CCCCCEEEEccCCC-CCCCHHHHHHhhccCCceEEEEEeC---CEEEEEeCCHHHHHHHHHhcCCCccC-C-cEEEEEEe
Q 030155 4 QRPTKTLFVINFDP-IRTRERDIKRHFEPYGNVLHVRIRR---NFAFVQFETQEEATKALESTDRSKLV-D-RVISVEYA 77 (182)
Q Consensus 4 ~~~~~~l~V~nL~p-~~~~e~~L~~~F~~~G~i~~~~i~~---g~afV~f~~~~~a~~Ai~~l~g~~~~-g-~~l~V~~a 77 (182)
..+++.|.+.=||| +.+|.+-|..+....|+|..|.|.+ -.|.|||++.+.|++|..+|||..|. | ..|+|++|
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyA 196 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYA 196 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEec
Confidence 34566777765554 6789999999999999999998832 37999999999999999999999884 4 57999999
Q ss_pred ecCC
Q 030155 78 LKDD 81 (182)
Q Consensus 78 ~~~~ 81 (182)
++.+
T Consensus 197 kP~r 200 (494)
T KOG1456|consen 197 KPTR 200 (494)
T ss_pred Ccce
Confidence 9765
No 97
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.29 E-value=5.7e-07 Score=78.15 Aligned_cols=75 Identities=16% Similarity=0.253 Sum_probs=65.6
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhc-cCCceEEEEE--eCCEEEEEeCCHHHHHHHHHhcCCCcc---CCcEEEEEEe
Q 030155 4 QRPTKTLFVINFDPIRTRERDIKRHFE-PYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKL---VDRVISVEYA 77 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~-~~G~i~~~~i--~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~V~~a 77 (182)
...++.|||.|| --.+|.-+|+.+++ ..|.|..+|| .+..|||.|.+.++|.+.+.+|||+++ +.+.|.|.|+
T Consensus 441 ~~~SnvlhI~nL-vRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 441 KEPSNVLHIDNL-VRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred CCccceEeeecc-cccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 346889999999 77899999999999 5667888877 688999999999999999999999987 5688999987
Q ss_pred ec
Q 030155 78 LK 79 (182)
Q Consensus 78 ~~ 79 (182)
..
T Consensus 520 ~~ 521 (718)
T KOG2416|consen 520 RA 521 (718)
T ss_pred ch
Confidence 63
No 98
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.28 E-value=6.1e-07 Score=75.27 Aligned_cols=69 Identities=25% Similarity=0.411 Sum_probs=57.2
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe---------------------CCEEEEEeCCHHHHHHHHHhcCC
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---------------------RNFAFVQFETQEEATKALESTDR 64 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~---------------------~g~afV~f~~~~~a~~Ai~~l~g 64 (182)
+.++|.+.|| |.+-.-+.|.+||..+|.|+.|.|. +-||||+|+..+.|.+|.+.|+.
T Consensus 230 ~srtivaenL-P~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENL-PLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecC-CcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 7899999999 8888889999999999999999881 34899999999999999998876
Q ss_pred CccCCcEEEEE
Q 030155 65 SKLVDRVISVE 75 (182)
Q Consensus 65 ~~~~g~~l~V~ 75 (182)
...+-..|+|.
T Consensus 309 e~~wr~glkvk 319 (484)
T KOG1855|consen 309 EQNWRMGLKVK 319 (484)
T ss_pred hhhhhhcchhh
Confidence 55444344443
No 99
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.17 E-value=2.8e-06 Score=73.29 Aligned_cols=74 Identities=23% Similarity=0.387 Sum_probs=59.0
Q ss_pred CCCCEEEEccC-CCCCCC--------HHHHHHhhccCCceEEEEE---eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEE
Q 030155 5 RPTKTLFVINF-DPIRTR--------ERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVI 72 (182)
Q Consensus 5 ~~~~~l~V~nL-~p~~~~--------e~~L~~~F~~~G~i~~~~i---~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 72 (182)
.++.++.+.|+ ||...| .++|.+.+.+||.|+.|.| ..||.||.|.+.+.|..|+.+|||..|.|+.|
T Consensus 441 i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~I 520 (549)
T KOG0147|consen 441 IPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMI 520 (549)
T ss_pred CccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhcccee
Confidence 34556666664 333222 2567777799999999998 24899999999999999999999999999999
Q ss_pred EEEEee
Q 030155 73 SVEYAL 78 (182)
Q Consensus 73 ~V~~a~ 78 (182)
.+.|-.
T Consensus 521 ta~~~~ 526 (549)
T KOG0147|consen 521 TAKYLP 526 (549)
T ss_pred EEEEee
Confidence 998865
No 100
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.16 E-value=5.5e-06 Score=70.71 Aligned_cols=71 Identities=30% Similarity=0.330 Sum_probs=58.4
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEE-EEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLH-VRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~-~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
...+|-+.+| |+.|+++||.+||+..--|.. |.| +.|-|||+|++.+.|++||.. |...|..+-|.|-.+
T Consensus 102 ~d~vVRLRGL-Pfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGL-PFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCC-CccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 4567889999 999999999999998754433 223 368999999999999999985 888888888888766
Q ss_pred e
Q 030155 78 L 78 (182)
Q Consensus 78 ~ 78 (182)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 5
No 101
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.11 E-value=9e-06 Score=49.67 Aligned_cols=50 Identities=22% Similarity=0.585 Sum_probs=42.6
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--CCEEEEEeCCHHHHHHHH
Q 030155 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKAL 59 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--~g~afV~f~~~~~a~~Ai 59 (182)
+.|-|.+. +. -..++|..+|..||+|..+.+. ..+.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf-~~-~~~~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGF-PP-DLAEEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeE-Cc-hHHHHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 57889999 43 3456777899999999999996 789999999999999985
No 102
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.09 E-value=7.2e-06 Score=67.24 Aligned_cols=72 Identities=22% Similarity=0.501 Sum_probs=58.8
Q ss_pred CCEEEEccCCCCCCCHH---HH--HHhhccCCceEEEEEeC---------CE--EEEEeCCHHHHHHHHHhcCCCccCCc
Q 030155 7 TKTLFVINFDPIRTRER---DI--KRHFEPYGNVLHVRIRR---------NF--AFVQFETQEEATKALESTDRSKLVDR 70 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~---~L--~~~F~~~G~i~~~~i~~---------g~--afV~f~~~~~a~~Ai~~l~g~~~~g~ 70 (182)
..-|||-+|+|....|+ .| .++|.+||.|..|.|.+ +. .||+|...++|..||..++|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 34588989966555555 23 58899999999999832 22 39999999999999999999999999
Q ss_pred EEEEEEee
Q 030155 71 VISVEYAL 78 (182)
Q Consensus 71 ~l~V~~a~ 78 (182)
.|+..+..
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99998866
No 103
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.07 E-value=1.1e-05 Score=67.58 Aligned_cols=74 Identities=28% Similarity=0.406 Sum_probs=63.3
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCce-EEEEE---eCCEEEEEeCCHHHHHHHHHhcCCCccCCc-EEEEEEeec
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNV-LHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDR-VISVEYALK 79 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i-~~~~i---~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~-~l~V~~a~~ 79 (182)
+|+.+|++.|+ |..++|++|+.+|..-|.. +...+ .+.+|++++++.++|..|+..||.+.+.+. -|+|.|++.
T Consensus 412 PpsatlHlsni-p~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 412 PPSATLHLSNI-PPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred CchhheeeccC-CcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 57889999999 8899999999999998855 44333 356999999999999999999999999754 899999874
No 104
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.05 E-value=1.8e-05 Score=54.72 Aligned_cols=71 Identities=20% Similarity=0.388 Sum_probs=53.2
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEE-------------E--eCCEEEEEeCCHHHHHHHHHhcCCCccCC
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVR-------------I--RRNFAFVQFETQEEATKALESTDRSKLVD 69 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~-------------i--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 69 (182)
.....|.|-++ |. .....|.+.|++||+|++.. + ...+..|+|++..+|++||. .||..|.|
T Consensus 4 ~~~~wVtVFGf-p~-~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g 80 (100)
T PF05172_consen 4 DSETWVTVFGF-PP-SASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSG 80 (100)
T ss_dssp GGCCEEEEE----G-GGHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETT
T ss_pred cCCeEEEEEcc-CH-HHHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcC
Confidence 34677899999 64 46788999999999998875 2 35689999999999999998 59999988
Q ss_pred cEEE-EEEee
Q 030155 70 RVIS-VEYAL 78 (182)
Q Consensus 70 ~~l~-V~~a~ 78 (182)
..|. |.+++
T Consensus 81 ~~mvGV~~~~ 90 (100)
T PF05172_consen 81 SLMVGVKPCD 90 (100)
T ss_dssp CEEEEEEE-H
T ss_pred cEEEEEEEcH
Confidence 6554 65653
No 105
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.03 E-value=6.2e-06 Score=65.15 Aligned_cols=74 Identities=12% Similarity=0.290 Sum_probs=62.2
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030155 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
......||.|.| ..+++.+.|...|.+|-......+ .+||+||.|.+.+++..|+..|+|..++.+.|++.
T Consensus 187 ~~~DfRIfcgdl-gNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 187 DEDDFRIFCGDL-GNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred ccccceeecccc-cccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 344668999999 788999999999999965544443 48999999999999999999999999999988875
Q ss_pred Eee
Q 030155 76 YAL 78 (182)
Q Consensus 76 ~a~ 78 (182)
.+.
T Consensus 266 kS~ 268 (290)
T KOG0226|consen 266 KSE 268 (290)
T ss_pred hhh
Confidence 544
No 106
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=2.6e-05 Score=67.76 Aligned_cols=72 Identities=17% Similarity=0.320 Sum_probs=57.9
Q ss_pred CCCCEEEEccCCCCCCCH-------HHHHHhhccCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcCCCccC-C
Q 030155 5 RPTKTLFVINFDPIRTRE-------RDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLV-D 69 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e-------~~L~~~F~~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~g~~~~-g 69 (182)
.-...|+|.|+ |. +.. .-|.++|+++|+|..+.++ +||+|++|++..+|+.|++.|||+.|+ +
T Consensus 56 g~D~vVvv~g~-Pv-V~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 56 GFDSVVVVDGA-PV-VGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CcceEEEECCC-cc-cChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 44568899999 63 443 3467889999999998883 799999999999999999999999885 5
Q ss_pred cEEEEEEee
Q 030155 70 RVISVEYAL 78 (182)
Q Consensus 70 ~~l~V~~a~ 78 (182)
+.+.|..-+
T Consensus 134 Htf~v~~f~ 142 (698)
T KOG2314|consen 134 HTFFVRLFK 142 (698)
T ss_pred ceEEeehhh
Confidence 666665543
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=2.4e-05 Score=67.23 Aligned_cols=59 Identities=27% Similarity=0.397 Sum_probs=53.1
Q ss_pred CCCCCCCEEEEccCCCCCCCHHHHHHhhc-cCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHh
Q 030155 2 ANQRPTKTLFVINFDPIRTRERDIKRHFE-PYGNVLHVRI--------RRNFAFVQFETQEEATKALES 61 (182)
Q Consensus 2 ~~~~~~~~l~V~nL~p~~~~e~~L~~~F~-~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~ 61 (182)
....+.+|||||+| |-.++.++|..||. -||.|+.+-| ++|-|=|+|.+..+-.+||.+
T Consensus 365 q~lDprrTVFVGgv-prpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGL-PRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCccceEEecCC-CCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 35678999999999 88999999999999 7999998887 589999999999999999873
No 108
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.94 E-value=8.8e-07 Score=73.62 Aligned_cols=69 Identities=16% Similarity=0.071 Sum_probs=55.0
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEE----eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030155 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
.+|+|++| +..+...+|.++|..+|+|....+ ..-+|.|+|........|+. ++|.++.-+...+.+.+
T Consensus 152 Rt~~v~sl-~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~k 224 (479)
T KOG4676|consen 152 RTREVQSL-ISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIK 224 (479)
T ss_pred hhhhhhcc-hhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcC
Confidence 57999999 788889999999999999998877 34578899999999999987 58877764444444433
No 109
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.93 E-value=5.9e-05 Score=55.24 Aligned_cols=76 Identities=22% Similarity=0.315 Sum_probs=54.6
Q ss_pred CCCCEEEEccCC---CC--CCCH---HHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030155 5 RPTKTLFVINFD---PI--RTRE---RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 5 ~~~~~l~V~nL~---p~--~~~e---~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
++..+|.|.-+. +. ...+ .+|.+.|..||+|.-+.+..+.-+|+|.+-+.|-+|+. |+|.+|+|+.|+|.+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~L 103 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGDTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRL 103 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETTCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCCeEEEEECccHHHHHHHc-cCCcEECCEEEEEEe
Confidence 455677775442 11 1222 46888899999999988888999999999999999997 899999999999998
Q ss_pred eecCC
Q 030155 77 ALKDD 81 (182)
Q Consensus 77 a~~~~ 81 (182)
..+..
T Consensus 104 KtpdW 108 (146)
T PF08952_consen 104 KTPDW 108 (146)
T ss_dssp -----
T ss_pred CCccH
Confidence 76543
No 110
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.90 E-value=3.4e-05 Score=63.39 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=60.9
Q ss_pred CCCEEEEccCC-CC--CCC-------HHHHHHhhccCCceEEEEE----eCCEEEEEeCCHHHHHHHHHhcCCCccCCcE
Q 030155 6 PTKTLFVINFD-PI--RTR-------ERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKLVDRV 71 (182)
Q Consensus 6 ~~~~l~V~nL~-p~--~~~-------e~~L~~~F~~~G~i~~~~i----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 71 (182)
..++|+|.||. |. ..+ +++|.+-..+||.|..|.| +.|.+.|.|.+.++|+.||+.|+|-.|.|++
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRq 343 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQ 343 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceE
Confidence 46789999872 11 122 3567777899999999988 6899999999999999999999999999999
Q ss_pred EEEEEeec
Q 030155 72 ISVEYALK 79 (182)
Q Consensus 72 l~V~~a~~ 79 (182)
|..++-..
T Consensus 344 l~A~i~DG 351 (382)
T KOG1548|consen 344 LTASIWDG 351 (382)
T ss_pred EEEEEeCC
Confidence 99887643
No 111
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.89 E-value=1.5e-05 Score=65.12 Aligned_cols=75 Identities=25% Similarity=0.454 Sum_probs=65.0
Q ss_pred CCCEEE-EccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030155 6 PTKTLF-VINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 6 ~~~~l~-V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
+..++| |+|| +..+++++|+.+|..+|.|..+.+ .++||+|+|.+...+..|+.. +...+.+..+.|..
T Consensus 183 ~s~~~~~~~~~-~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 183 PSDTIFFVGEL-DFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred ccccceeeccc-ccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 344566 9999 799999999999999999999988 378999999999999999987 88889999999988
Q ss_pred eecCCC
Q 030155 77 ALKDDS 82 (182)
Q Consensus 77 a~~~~~ 82 (182)
..+...
T Consensus 261 ~~~~~~ 266 (285)
T KOG4210|consen 261 DEPRPK 266 (285)
T ss_pred CCCCcc
Confidence 876543
No 112
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.87 E-value=1.9e-05 Score=65.87 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=57.8
Q ss_pred CCCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-----------CCEEEEEeCCHHHHHHHHHhcCCCccCCc
Q 030155 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----------RNFAFVQFETQEEATKALESTDRSKLVDR 70 (182)
Q Consensus 2 ~~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-----------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 70 (182)
+.......|.|.|| ...++.+++..||...|+|.++.|. .-.|||.|.+.+.+..|.. |.+++|-+.
T Consensus 2 ~gg~~~~vIqvani-spsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdr 79 (479)
T KOG4676|consen 2 VGGSSLGVIQVANI-SPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDR 79 (479)
T ss_pred CCCCCCceeeeccc-CchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeee
Confidence 34455568999999 4589999999999999999998872 3589999999999988875 677776666
Q ss_pred EEEEEE
Q 030155 71 VISVEY 76 (182)
Q Consensus 71 ~l~V~~ 76 (182)
.|.|-.
T Consensus 80 aliv~p 85 (479)
T KOG4676|consen 80 ALIVRP 85 (479)
T ss_pred eEEEEe
Confidence 555543
No 113
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.83 E-value=5.4e-05 Score=65.71 Aligned_cols=56 Identities=25% Similarity=0.465 Sum_probs=48.7
Q ss_pred HHHHHhhccCCceEEEEEe-----------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030155 23 RDIKRHFEPYGNVLHVRIR-----------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 23 ~~L~~~F~~~G~i~~~~i~-----------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
++|+.-+.+||.|..|.|+ .|..||+|.+.++|+.|+++|+|.+|.|+.|...|..
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 3456668899999999983 4678999999999999999999999999999888754
No 114
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=8.7e-05 Score=63.87 Aligned_cols=56 Identities=21% Similarity=0.416 Sum_probs=46.1
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE----------eCC---EEEEEeCCHHHHHHHHHhcC
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----------RRN---FAFVQFETQEEATKALESTD 63 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i----------~~g---~afV~f~~~~~a~~Ai~~l~ 63 (182)
..+||||+| |+.++|++|...|..||.+.--+= ++| |+|+.|+++..++..|.++.
T Consensus 259 S~KVFvGGl-p~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 259 SRKVFVGGL-PWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccceeecCC-CccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 678999999 899999999999999997542111 467 99999999999888776543
No 115
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.77 E-value=9.9e-06 Score=64.04 Aligned_cols=57 Identities=25% Similarity=0.391 Sum_probs=49.5
Q ss_pred HHHHHhhc-cCCceEEEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeec
Q 030155 23 RDIKRHFE-PYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (182)
Q Consensus 23 ~~L~~~F~-~~G~i~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 79 (182)
++|...|+ +||+|+++.| ..|-++|.|...++|++|++.||+-.|.|++|..++..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 45555666 8999999877 467899999999999999999999999999999998763
No 116
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.76 E-value=1.9e-05 Score=65.04 Aligned_cols=68 Identities=12% Similarity=0.244 Sum_probs=55.8
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCC--ceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYG--NVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G--~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
.-++||||| -|.||.+||.+.+...| .|.++++ .+|||+|...+...+++.++.|...+|.|+.-.|.
T Consensus 80 k~~~YvGNL-~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNL-LWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecce-eEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 347899999 89999999999988877 3444433 58999999999999999999999999988755554
No 117
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.68 E-value=4.7e-05 Score=64.23 Aligned_cols=74 Identities=20% Similarity=0.292 Sum_probs=61.7
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccC--CceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCC-ccCCcEEEEEEeecCCC
Q 030155 8 KTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRS-KLVDRVISVEYALKDDS 82 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~--G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~-~~~g~~l~V~~a~~~~~ 82 (182)
..||++|| ...++..+|+.+|... +--..+.|..|||||.+.+...|.+|++.|+|+ ++.|..+.|++..++..
T Consensus 2 nklyignL-~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNL-SPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred Cccccccc-CCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 46899999 5689999999999854 333455567899999999999999999999985 68999999999876543
No 118
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.64 E-value=0.00018 Score=64.14 Aligned_cols=68 Identities=34% Similarity=0.465 Sum_probs=58.6
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceE-EEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030155 8 KTLFVINFDPIRTRERDIKRHFEPYGNVL-HVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~-~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
+.|-|-|+ |++++-+||.+||.-|-.+- .|.| +.|-|.|.|++.++|..|+..|++.+|..++|.|.+
T Consensus 868 ~V~~~~n~-Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNF-PFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCC-CccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 36778899 99999999999999997553 3333 578999999999999999999999999999988865
No 119
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.61 E-value=6.9e-05 Score=68.19 Aligned_cols=78 Identities=21% Similarity=0.335 Sum_probs=67.9
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--CCEEEEEeCCHHHHHHHHHhcCCCccCC--cEEEEEEeec
Q 030155 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVD--RVISVEYALK 79 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--~g~afV~f~~~~~a~~Ai~~l~g~~~~g--~~l~V~~a~~ 79 (182)
..+++.+||++| ..++....|..+|..||.|..|.+- ..||+|+|++...|+.|+..|-|..|.+ +.|.|.+|..
T Consensus 452 st~ttr~~sggl-g~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 452 STPTTRLQSGGL-GPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred cccceeeccCCC-CCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 346789999999 6678899999999999999999985 4599999999999999999999999975 5799999886
Q ss_pred CCC
Q 030155 80 DDS 82 (182)
Q Consensus 80 ~~~ 82 (182)
...
T Consensus 531 ~~~ 533 (975)
T KOG0112|consen 531 PGA 533 (975)
T ss_pred CCC
Confidence 543
No 120
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.53 E-value=0.00059 Score=45.27 Aligned_cols=56 Identities=21% Similarity=0.468 Sum_probs=45.8
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCC
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 64 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g 64 (182)
....||+ + |.+....||.++|..||.|.--+|...-|||...+.+.|..|+..+.-
T Consensus 9 dHVFhlt-F-PkeWK~~DI~qlFspfG~I~VsWi~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-F-PKEWKTSDIYQLFSPFGQIYVSWINDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE----TT--HHHHHHHCCCCCCEEEEEECTTEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-C-chHhhhhhHHHHhccCCcEEEEEEcCCcEEEEeecHHHHHHHHHHhcc
Confidence 4566666 7 778889999999999999998899899999999999999999988764
No 121
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.48 E-value=0.0001 Score=61.51 Aligned_cols=72 Identities=18% Similarity=0.250 Sum_probs=60.4
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCc-eEE--EEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGN-VLH--VRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~-i~~--~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
+..+|-+.+| |+..+.++|.+||..|.. |.. |+| +.|-|||+|.+.+.|-.|....|++.+..+.|.|-
T Consensus 279 ~kdcvRLRGL-Py~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 279 SKDCVRLRGL-PYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCCeeEecCC-ChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 3567889999 999999999999999873 433 555 46899999999999999999999888888888887
Q ss_pred Eee
Q 030155 76 YAL 78 (182)
Q Consensus 76 ~a~ 78 (182)
.+.
T Consensus 358 p~S 360 (508)
T KOG1365|consen 358 PCS 360 (508)
T ss_pred ecc
Confidence 654
No 122
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.46 E-value=7.3e-05 Score=59.20 Aligned_cols=65 Identities=17% Similarity=0.310 Sum_probs=56.5
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe------------CC--------EEEEEeCCHHHHHHHHHhcCCC
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------------RN--------FAFVQFETQEEATKALESTDRS 65 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~------------~g--------~afV~f~~~~~a~~Ai~~l~g~ 65 (182)
.+-.||+++| |..+...-|.+||..||+|-.|.|. +| -+.|+|.+...|..+...||+.
T Consensus 73 k~GVvylS~I-Pp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNI-PPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccC-CCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 4568999999 7789999999999999999999881 11 3789999999999999999999
Q ss_pred ccCCcE
Q 030155 66 KLVDRV 71 (182)
Q Consensus 66 ~~~g~~ 71 (182)
.|.|..
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 998863
No 123
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.43 E-value=0.001 Score=41.80 Aligned_cols=53 Identities=26% Similarity=0.411 Sum_probs=43.1
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccC----CceEEE-EEeCCEEEEEeCCHHHHHHHHHhc
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPY----GNVLHV-RIRRNFAFVQFETQEEATKALEST 62 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~----G~i~~~-~i~~g~afV~f~~~~~a~~Ai~~l 62 (182)
...|+|.|++ +++.++|+.+|..| ++ ..| +|.-.-|-|.|.+.+.|..||.+|
T Consensus 5 peavhirGvd--~lsT~dI~~y~~~y~~~~~~-~~IEWIdDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD--ELSTDDIKAYFSEYFDEEGP-FRIEWIDDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC--CCCHHHHHHHHHHhcccCCC-ceEEEecCCcEEEEECCHHHHHHHHHcC
Confidence 4579999994 78999999999999 43 344 345567889999999999999865
No 124
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.34 E-value=0.00048 Score=55.73 Aligned_cols=57 Identities=33% Similarity=0.360 Sum_probs=48.9
Q ss_pred HHHHHHhhccCCceEEEEEe---------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030155 22 ERDIKRHFEPYGNVLHVRIR---------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 22 e~~L~~~F~~~G~i~~~~i~---------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
++++++.+++||.|..|.|. .--.||+|+..++|.+|+-.|||..|.|+.+...|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 35678889999999988871 2358999999999999999999999999998887754
No 125
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=97.25 E-value=0.0015 Score=42.56 Aligned_cols=59 Identities=29% Similarity=0.330 Sum_probs=39.4
Q ss_pred CCCCHHHHHHhhccCC-----ceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 18 IRTRERDIKRHFEPYG-----NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 18 ~~~~e~~L~~~F~~~G-----~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
..++..+|..+|...+ .|-.|.|...|+||+... +.|+.++..|++..+.|+.|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4788999999998764 466788899999999985 5889999999999999999999875
No 126
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.13 E-value=0.002 Score=52.36 Aligned_cols=67 Identities=21% Similarity=0.314 Sum_probs=53.2
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--CCEEEEEeCCHHHHHHHHHhcCCCccCCcE-EEEEE
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRV-ISVEY 76 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~-l~V~~ 76 (182)
...|-|-++ + ......|..+|.+||+|++.... -.+-+|-|.+..+|++||. .||+.|+|.. |-|.-
T Consensus 197 D~WVTVfGF-p-pg~~s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGF-P-PGQVSIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEecc-C-ccchhHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeee
Confidence 566777888 4 35667889999999999988773 4589999999999999997 5999998754 34444
No 127
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.07 E-value=0.0042 Score=45.40 Aligned_cols=74 Identities=18% Similarity=0.294 Sum_probs=55.4
Q ss_pred CCCCCCEEEEccCCCCCCC-HHH---HHHhhccCCceEEEEE-eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 3 NQRPTKTLFVINFDPIRTR-ERD---IKRHFEPYGNVLHVRI-RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~-e~~---L~~~F~~~G~i~~~~i-~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
..+|-.+|.|.=| ..++. .+| |...++.||+|..|.+ .+.-|+|.|.+..+|-+|+.+++. ..-|.-+...|.
T Consensus 82 kepPMsTIVVRWl-kknm~~~edl~sV~~~Ls~fGpI~SVT~cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 82 KEPPMSTIVVRWL-KKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCCceeEEeehh-hhcCChHHHHHHHHHHHHhcCCcceeeecCCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 3567778888766 45543 244 4455778999999987 467899999999999999999886 455666777665
Q ss_pred e
Q 030155 78 L 78 (182)
Q Consensus 78 ~ 78 (182)
.
T Consensus 160 q 160 (166)
T PF15023_consen 160 Q 160 (166)
T ss_pred c
Confidence 3
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.92 E-value=0.00042 Score=62.90 Aligned_cols=74 Identities=18% Similarity=0.251 Sum_probs=65.1
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeec
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 79 (182)
...|||.|+ |+..|.++|+.+|.++|.++.+.+ ++|.|||.|.+..+|..++..++...+....+.|+++.+
T Consensus 736 K~~v~i~g~-pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGP-PFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCC-CCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 457899999 899999999999999999988866 589999999999999999998888888888888888665
Q ss_pred CC
Q 030155 80 DD 81 (182)
Q Consensus 80 ~~ 81 (182)
..
T Consensus 815 ~~ 816 (881)
T KOG0128|consen 815 ER 816 (881)
T ss_pred cc
Confidence 43
No 129
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.92 E-value=0.0022 Score=49.14 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=45.1
Q ss_pred CHHHHHHhhccCCceEEEEEeCC--EEEEEeCCHHHHHHHHHhcC--CCccCCcEEEEEEeecC
Q 030155 21 RERDIKRHFEPYGNVLHVRIRRN--FAFVQFETQEEATKALESTD--RSKLVDRVISVEYALKD 80 (182)
Q Consensus 21 ~e~~L~~~F~~~G~i~~~~i~~g--~afV~f~~~~~a~~Ai~~l~--g~~~~g~~l~V~~a~~~ 80 (182)
..+.|+++|..|+.+..+.+.+. =.+|.|.+.+.|+.|...|+ +..|.|..|+|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 56889999999998877776554 47899999999999999999 99999999999998543
No 130
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.73 E-value=0.00086 Score=59.92 Aligned_cols=72 Identities=21% Similarity=0.216 Sum_probs=58.2
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEE-EEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH-VRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~-~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
..+.+|||..| |..+++.++.++|.+.-.|++ |.| ..+.|||+|..++++..|+..-+.+-+..+.|+|.-
T Consensus 432 ~ag~~lyv~~l-P~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQL-PVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccC-CccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 34678999999 999999999999998777776 666 257899999999999998876566666777888864
Q ss_pred e
Q 030155 77 A 77 (182)
Q Consensus 77 a 77 (182)
.
T Consensus 511 i 511 (944)
T KOG4307|consen 511 I 511 (944)
T ss_pred h
Confidence 3
No 131
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.68 E-value=0.0023 Score=48.76 Aligned_cols=78 Identities=17% Similarity=0.264 Sum_probs=49.5
Q ss_pred CCCCCCCCEEEEccCCCCCCCHHHHHHhhcc-CCce---EEEE--E--------eCCEEEEEeCCHHHHHHHHHhcCCCc
Q 030155 1 MANQRPTKTLFVINFDPIRTRERDIKRHFEP-YGNV---LHVR--I--------RRNFAFVQFETQEEATKALESTDRSK 66 (182)
Q Consensus 1 s~~~~~~~~l~V~nL~p~~~~e~~L~~~F~~-~G~i---~~~~--i--------~~g~afV~f~~~~~a~~Ai~~l~g~~ 66 (182)
|.......+|.|.+| |.++||+++.+.+.. ++.. ..+. + .-.-|+|.|.+.+++...+..++|+.
T Consensus 1 ~~~~~~~~KvVIR~L-PP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~ 79 (176)
T PF03467_consen 1 MKKEKEGTKVVIRRL-PPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHV 79 (176)
T ss_dssp --------EEEEEEE--TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEE
T ss_pred CCCcccCceEEEeCC-CCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcE
Confidence 455667789999999 789999999987776 6544 2332 1 12359999999999999999999988
Q ss_pred cCC-----cEEEEEEeec
Q 030155 67 LVD-----RVISVEYALK 79 (182)
Q Consensus 67 ~~g-----~~l~V~~a~~ 79 (182)
|.+ ....|++|.-
T Consensus 80 F~D~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 80 FVDSKGNEYPAVVEFAPY 97 (176)
T ss_dssp EE-TTS-EEEEEEEE-SS
T ss_pred EECCCCCCcceeEEEcch
Confidence 732 2456667654
No 132
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.66 E-value=0.00027 Score=64.47 Aligned_cols=72 Identities=24% Similarity=0.355 Sum_probs=60.8
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
..+.+||+||| ...+++.+|..+|..+|.|..|.|. ..||||.|.+...+..|+..|.+..|....+++.+.
T Consensus 370 ~atrTLf~Gnl-~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNL-DSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCc-ccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 35789999999 6789999999999999999999983 359999999999999999989888775555555554
No 133
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.62 E-value=0.059 Score=48.88 Aligned_cols=62 Identities=8% Similarity=0.199 Sum_probs=51.1
Q ss_pred CCCCHHHHHHhhccCCce-----EEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030155 18 IRTRERDIKRHFEPYGNV-----LHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 18 ~~~~e~~L~~~F~~~G~i-----~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
..++..+|..++..-+.| -.|.|...|.||+.. ...|...+..|++..+.|+.|.|+.+...
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLLGDA 563 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEeCCceEEEcC-hhhHHHHHHHhccccccCCceEEEECCCC
Confidence 478888998888876644 457778899999998 56688999999999999999999988533
No 134
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.60 E-value=0.0033 Score=54.94 Aligned_cols=67 Identities=15% Similarity=0.233 Sum_probs=50.6
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhcc--CCceEEEEE-eCCEEEEEeCCHHHHHHHHHhcCC--CccCCcEEE
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEP--YGNVLHVRI-RRNFAFVQFETQEEATKALESTDR--SKLVDRVIS 73 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~--~G~i~~~~i-~~g~afV~f~~~~~a~~Ai~~l~g--~~~~g~~l~ 73 (182)
.-|.|+|.-| |+.+-+++|+.||.. +-.+..|.+ ...-=||+|++.++|+.|.+.|.. ++|.|+.|.
T Consensus 174 kRcIvilREI-pettp~e~Vk~lf~~encPk~iscefa~N~nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 174 KRCIVILREI-PETTPIEVVKALFKGENCPKVISCEFAHNDNWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred ceeEEEEeec-CCCChHHHHHHHhccCCCCCceeeeeeecCceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 4567778899 888899999999985 556777777 355569999999999999876643 345554443
No 135
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.56 E-value=0.0013 Score=56.33 Aligned_cols=59 Identities=24% Similarity=0.413 Sum_probs=51.7
Q ss_pred CHHHHHHhhccCCceEEEEE--eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030155 21 RERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 21 ~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
+-++|..+|.+||+|..|.+ .--.|+|+|.+..+|-.|.. .++..|+++.|+|.|-++.
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 46889999999999999988 34579999999999977765 6999999999999998863
No 136
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.51 E-value=0.0009 Score=55.03 Aligned_cols=73 Identities=14% Similarity=0.300 Sum_probs=55.8
Q ss_pred CEEEEccCCCCCCCHHHHH--HhhccCCceEEEEEeC-----------CEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030155 8 KTLFVINFDPIRTRERDIK--RHFEPYGNVLHVRIRR-----------NFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~--~~F~~~G~i~~~~i~~-----------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
.-+||-+|++....+..|+ +.|.+||.|..|.+.+ .-++|+|+..++|..||...+|..++|+.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 3467777743334555554 5699999999998832 23799999999999999999999999998777
Q ss_pred EEeecC
Q 030155 75 EYALKD 80 (182)
Q Consensus 75 ~~a~~~ 80 (182)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776543
No 137
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.46 E-value=0.0025 Score=53.46 Aligned_cols=62 Identities=29% Similarity=0.376 Sum_probs=43.9
Q ss_pred EEEccCCCCCCCHHHHHHhhccCCc-------eEEEEE----eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 030155 10 LFVINFDPIRTRERDIKRHFEPYGN-------VLHVRI----RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (182)
Q Consensus 10 l~V~nL~p~~~~e~~L~~~F~~~G~-------i~~~~i----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 73 (182)
|-+.+| |+++++.++.+||..--. |..|.- +.|-|||.|..+++|+.||.+ |...|.-+-|.
T Consensus 164 vRmRGL-Pfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIE 236 (508)
T KOG1365|consen 164 VRMRGL-PFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIE 236 (508)
T ss_pred EEecCC-CCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHH
Confidence 334789 999999999999974322 222222 368999999999999999975 55444444333
No 138
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.46 E-value=0.0017 Score=57.57 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=62.3
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
..++.-+|||+|| ...+..+-++.++..+|.|..+...+ |+|.+|..+..+..|+..|+-..++|..|.+...
T Consensus 36 ~~~~~~~vfv~~~-~~~~s~~~~~~il~~~g~v~s~kr~~-fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 36 PLPPRDTVFVGNI-SYLVSQEFWKSILAKSGFVPSWKRDK-FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCCCceeEecch-hhhhhHHHHHHHHhhCCcchhhhhhh-hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 3456789999999 77888888999999999888776544 9999999999999999999999998888777663
No 139
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=96.38 E-value=0.024 Score=36.11 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=45.7
Q ss_pred CCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030155 19 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 19 ~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
.++-++|+..|.+|+ ...|...+--=||.|.+..+|++|....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 578999999999997 3555555555689999999999999999999988877765
No 140
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.09 E-value=0.0038 Score=56.96 Aligned_cols=70 Identities=21% Similarity=0.252 Sum_probs=58.1
Q ss_pred EEccCCCCCCCHHHHHHhhccCCceEEEEEeC--CEEEEEeCCHHHHHHHHHhcCCCcc--CCcEEEEEEeecCC
Q 030155 11 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRR--NFAFVQFETQEEATKALESTDRSKL--VDRVISVEYALKDD 81 (182)
Q Consensus 11 ~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~--g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~~a~~~~ 81 (182)
++.|. +-+++...|..+|.+||.|..+++.+ ..|.|+|...+.|..|+.+|+|+++ .|.+.+|.+|+...
T Consensus 302 ~~~nn-~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 302 SLENN-AVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhcc-cccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 34444 44566778999999999999998844 5799999999999999999999876 68889999998654
No 141
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.03 E-value=0.0005 Score=62.46 Aligned_cols=61 Identities=30% Similarity=0.410 Sum_probs=51.1
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccC
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLV 68 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 68 (182)
..++||.|| +..+.+.+|...|..+|.|..+.+ .+|+|+|+|...+.|.+||....++.+.
T Consensus 667 ~~~~fvsnl-~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNL-SPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhc-chhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 357899999 778999999999999998776655 4799999999999999999866655554
No 142
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.74 E-value=0.016 Score=50.72 Aligned_cols=76 Identities=18% Similarity=0.317 Sum_probs=49.4
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhc-cCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCcc----CCcEE
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFE-PYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKL----VDRVI 72 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~-~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~----~g~~l 72 (182)
+-+++.|.|+ +..-|...|.+.-. ..|.-..+.| ..|||||.|.+.+++..+.+++||+.+ ..+.+
T Consensus 387 ~rtt~~ikni-pNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia 465 (549)
T KOG4660|consen 387 PRTTLMIKNI-PNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIA 465 (549)
T ss_pred chhhhHhhcc-CchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeee
Confidence 3445566666 54444444433322 2344334443 368999999999999999999999875 34567
Q ss_pred EEEEeecCCC
Q 030155 73 SVEYALKDDS 82 (182)
Q Consensus 73 ~V~~a~~~~~ 82 (182)
.|.||.-+..
T Consensus 466 ~itYArIQGk 475 (549)
T KOG4660|consen 466 SITYARIQGK 475 (549)
T ss_pred eeehhhhhch
Confidence 7777775543
No 143
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=0.072 Score=47.04 Aligned_cols=76 Identities=25% Similarity=0.380 Sum_probs=59.4
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccC----CceEEEEE-----------------e----------------------
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPY----GNVLHVRI-----------------R---------------------- 41 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~----G~i~~~~i-----------------~---------------------- 41 (182)
..++.|-|.||+=..+...+|..+|..| |.|..|.| +
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 4678999999953346778999998876 57888887 1
Q ss_pred ----------------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030155 42 ----------------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 42 ----------------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
.-||+|+|.+++.|.+..+.|+|.+|....+.+.+-.-+
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 127999999999999999999999997666666555433
No 144
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.56 E-value=0.25 Score=34.70 Aligned_cols=59 Identities=20% Similarity=0.252 Sum_probs=43.0
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCC-ceEEEEEe------CCEEEEEeCCHHHHHHHHHhcCCCccC
Q 030155 9 TLFVINFDPIRTRERDIKRHFEPYG-NVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLV 68 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G-~i~~~~i~------~g~afV~f~~~~~a~~Ai~~l~g~~~~ 68 (182)
.+.+... |+-++.++|..+.+.+- .|..+.|. +-.++|.|.+.++|+...+.+||+.|.
T Consensus 15 ~~~l~vp-~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVP-PYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeC-cccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3444445 66666677776666664 45666662 336899999999999999999999874
No 145
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.45 E-value=0.016 Score=46.25 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=53.0
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEE-------eCCEEEEEeCCHHHHHHHHHhcCC----CccCCcEEEEEE
Q 030155 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDR----SKLVDRVISVEY 76 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g----~~~~g~~l~V~~ 76 (182)
..|||.|| ...++.+.|+..|..||+|....+ +.+-++|+|...-.|.+|+..+.- .++.+....|+.
T Consensus 32 a~l~V~nl-~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNL-MQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEec-chhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 67999999 667899999999999999865444 356789999999999999987742 234555555544
Q ss_pred e
Q 030155 77 A 77 (182)
Q Consensus 77 a 77 (182)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 3
No 146
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=93.71 E-value=0.03 Score=45.87 Aligned_cols=72 Identities=17% Similarity=0.119 Sum_probs=55.8
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
..+++||+++ .+.+.+.++..+|.++|.+..+.+ .++++.|.|...+.+..||.......+.+..+...+.
T Consensus 87 ~~~~~f~g~~-s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGEL-SENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccc-ccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 3678999999 788888888999999997766554 4899999999999999999854444666655555444
Q ss_pred e
Q 030155 78 L 78 (182)
Q Consensus 78 ~ 78 (182)
.
T Consensus 166 ~ 166 (285)
T KOG4210|consen 166 T 166 (285)
T ss_pred c
Confidence 3
No 147
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.90 E-value=0.32 Score=41.91 Aligned_cols=64 Identities=17% Similarity=0.348 Sum_probs=53.2
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCC-ceEEEEEe------CCEEEEEeCCHHHHHHHHHhcCCCccCC
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVD 69 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G-~i~~~~i~------~g~afV~f~~~~~a~~Ai~~l~g~~~~g 69 (182)
.++..|+|-.+ |..++-.||..|+..+- .|..+.|. +-.++|.|.+.++|....+.+||..|.-
T Consensus 72 ~~~~mLcilaV-P~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 72 SSSTMLCILAV-PAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCcEEEEEec-cccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 34788999999 88899999999998764 67777773 2368999999999999999999998843
No 148
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=91.82 E-value=2.6 Score=33.01 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=17.0
Q ss_pred EEEEeCCHHHHHHHHH--hcCCCcc
Q 030155 45 AFVQFETQEEATKALE--STDRSKL 67 (182)
Q Consensus 45 afV~f~~~~~a~~Ai~--~l~g~~~ 67 (182)
-|-.=.+.++|.+||. .|+|.+|
T Consensus 61 rf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 61 RFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred EeeecchHHHHHHhhcceeecccee
Confidence 3455578889998885 5788777
No 149
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=89.86 E-value=0.44 Score=36.25 Aligned_cols=74 Identities=9% Similarity=0.126 Sum_probs=51.8
Q ss_pred CCEEEEccCCCCCC-CH----HHHHHhhccCCceEEEEEeC--CEEEEEeCCHHHHHHHHHhcCCCccCCc-EEEEEEee
Q 030155 7 TKTLFVINFDPIRT-RE----RDIKRHFEPYGNVLHVRIRR--NFAFVQFETQEEATKALESTDRSKLVDR-VISVEYAL 78 (182)
Q Consensus 7 ~~~l~V~nL~p~~~-~e----~~L~~~F~~~G~i~~~~i~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~-~l~V~~a~ 78 (182)
...|+++++ ...+ ++ ...+.+|.+|-+.....+.+ ++.-|.|.+.+.|..|...++...|.|. .|+..++.
T Consensus 10 p~~~~~c~i-~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 10 PTAIIACDI-HEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred cceeeeecc-cHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 345777877 3333 22 23456666666655555544 4566799999999999999999999887 88888887
Q ss_pred cCC
Q 030155 79 KDD 81 (182)
Q Consensus 79 ~~~ 81 (182)
...
T Consensus 89 ~~~ 91 (193)
T KOG4019|consen 89 PGH 91 (193)
T ss_pred CCC
Confidence 543
No 150
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=89.78 E-value=0.13 Score=41.74 Aligned_cols=61 Identities=26% Similarity=0.524 Sum_probs=41.2
Q ss_pred CCCEEEEccCCCCC------------CCHHHHHHhhccCCceEEEEEe------------------CCE---------EE
Q 030155 6 PTKTLFVINFDPIR------------TRERDIKRHFEPYGNVLHVRIR------------------RNF---------AF 46 (182)
Q Consensus 6 ~~~~l~V~nL~p~~------------~~e~~L~~~F~~~G~i~~~~i~------------------~g~---------af 46 (182)
-..+||+.+| |.. -+++-|...|..||+|..|.|+ .|| ||
T Consensus 148 rpdti~la~i-p~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 148 RPDTIHLAGI-PCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCceeecCC-cceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 3567888887 532 2456799999999999988872 233 34
Q ss_pred EEeCCHHHHHHHHHhcCCCcc
Q 030155 47 VQFETQEEATKALESTDRSKL 67 (182)
Q Consensus 47 V~f~~~~~a~~Ai~~l~g~~~ 67 (182)
|+|........|+.+|.|.++
T Consensus 227 vqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchH
Confidence 555555555667777777654
No 151
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=89.21 E-value=1.2 Score=36.44 Aligned_cols=56 Identities=16% Similarity=0.295 Sum_probs=41.4
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCce-EEEEE--eCCEEEEEeCCHH-------HHHHHHHhcC
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGNV-LHVRI--RRNFAFVQFETQE-------EATKALESTD 63 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i-~~~~i--~~g~afV~f~~~~-------~a~~Ai~~l~ 63 (182)
..-|+|+|| +.++.-.||+..+.+.+.+ ..+.+ ..+-||+.|.+.. ++.+++..+|
T Consensus 330 ~~di~~~nl-~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 330 KTDIKLTNL-SRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred ccceeeccC-ccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 456999999 8999999999999988743 44544 4678999998653 4455555443
No 152
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=87.62 E-value=0.018 Score=49.02 Aligned_cols=72 Identities=15% Similarity=0.282 Sum_probs=58.8
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-----CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeec
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-----~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 79 (182)
.++|-|.|+ |....|+.|..++..||.|..|... ....-|+|...+.+..||..|+|..|.+..++|.|-..
T Consensus 80 srk~Qirni-ppql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 80 SRKIQIRNI-PPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred hhhhhHhcC-CHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 456778899 7789999999999999999887652 12334678888999999999999999999999988643
No 153
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=87.57 E-value=2.5 Score=36.30 Aligned_cols=67 Identities=28% Similarity=0.443 Sum_probs=51.6
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccC----CceEEEEE---------e-----------------------------
Q 030155 4 QRPTKTLFVINFDPIRTRERDIKRHFEPY----GNVLHVRI---------R----------------------------- 41 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~----G~i~~~~i---------~----------------------------- 41 (182)
-.++..|-|-||+=..+...+|..+|+.| |.|..|.| +
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 45678899999953346778899888765 46777776 0
Q ss_pred ----------------C-------------------CEEEEEeCCHHHHHHHHHhcCCCccCCc
Q 030155 42 ----------------R-------------------NFAFVQFETQEEATKALESTDRSKLVDR 70 (182)
Q Consensus 42 ----------------~-------------------g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 70 (182)
. -||+|++.+.+.+.....+++|+++...
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~s 286 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENS 286 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccc
Confidence 0 1699999999999999999999988544
No 154
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=84.52 E-value=1.8 Score=30.67 Aligned_cols=50 Identities=14% Similarity=0.341 Sum_probs=25.7
Q ss_pred EEEEccCCCCC---------CCHHHHHHhhccCCceEEEEE-----eCCEEEEEeCCH-HHHHHHH
Q 030155 9 TLFVINFDPIR---------TRERDIKRHFEPYGNVLHVRI-----RRNFAFVQFETQ-EEATKAL 59 (182)
Q Consensus 9 ~l~V~nL~p~~---------~~e~~L~~~F~~~G~i~~~~i-----~~g~afV~f~~~-~~a~~Ai 59 (182)
+++|-|+ +.. ++.++|.+.|..|..+.-..+ ..++++|+|... .-...|+
T Consensus 10 mgIi~N~-~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNI-PTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE-----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcC-ccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHH
Confidence 5667777 432 345789999999987654444 468999999854 3334444
No 155
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=80.76 E-value=15 Score=26.35 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=52.1
Q ss_pred CCCEEEEccCCCCC---CCHHHHHHhhccCC-ceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030155 6 PTKTLFVINFDPIR---TRERDIKRHFEPYG-NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 6 ~~~~l~V~nL~p~~---~~e~~L~~~F~~~G-~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
+...|.|.+. ... .+...|++++.+-| .++.+....+-..|.|.+.++..+|.+.|....-.+..|.+..+.
T Consensus 34 edpavQIs~~-~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 34 QESTLAIRAV-HQGASLPDGFYVYQHLDANGIHIKSITPENDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred CCceEEEecC-CCCCccchHHHHHHHHHHCCCCcceEEeeCCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 3445667655 222 45678888898888 677888778899999999999988888777655555566666554
No 156
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.48 E-value=3.9 Score=35.06 Aligned_cols=54 Identities=24% Similarity=0.429 Sum_probs=42.5
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCc-eEEE-EEeCCEEEEEeCCHHHHHHHHHh
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGN-VLHV-RIRRNFAFVQFETQEEATKALES 61 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~-i~~~-~i~~g~afV~f~~~~~a~~Ai~~ 61 (182)
.+.|-|.++ |.....+||..+|+.|++ -..| ||-.-.||..|.+...|..||-.
T Consensus 391 pHVlEIydf-p~efkteDll~~f~~yq~kgfdIkWvDdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDF-PDEFKTEDLLKAFETYQNKGFDIKWVDDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccC-chhhccHHHHHHHHHhhcCCceeEEeecceeEEeecchHHHHHHhhc
Confidence 467888999 777778899999999974 2333 33467899999999999999863
No 157
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=79.39 E-value=22 Score=27.19 Aligned_cols=8 Identities=38% Similarity=0.542 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 030155 52 QEEATKAL 59 (182)
Q Consensus 52 ~~~a~~Ai 59 (182)
.++|..+|
T Consensus 60 A~DAvr~L 67 (195)
T KOG0107|consen 60 AEDAVRYL 67 (195)
T ss_pred HHHHHhhc
Confidence 34444444
No 158
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=77.52 E-value=3.5 Score=34.94 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=44.9
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCc-eEEEEE----------eCCEEEEEeCCHHHHHHHHHhcCCCcc
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGN-VLHVRI----------RRNFAFVQFETQEEATKALESTDRSKL 67 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~-i~~~~i----------~~g~afV~f~~~~~a~~Ai~~l~g~~~ 67 (182)
.....|.|.+| |...++++|.+-+..|-+ |....+ ..+.|+|.|...++.+.....++|++|
T Consensus 5 ~~~~Kvv~rrl-pp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 5 EAKVKVVVRRL-PPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ccceeeeeecC-CCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 34567888999 667888887776666532 222222 245799999999999999999999876
No 159
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=76.03 E-value=3.1 Score=34.23 Aligned_cols=35 Identities=31% Similarity=0.294 Sum_probs=26.2
Q ss_pred EEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecCC
Q 030155 45 AFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 81 (182)
Q Consensus 45 afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 81 (182)
|||+|++..+|+.|++.+..... ..+.|+.|..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCcc
Confidence 79999999999999986555443 455777776543
No 160
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=75.99 E-value=12 Score=22.55 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=37.7
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCCH----HHHHHHHHh
Q 030155 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQ----EEATKALES 61 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~~----~~a~~Ai~~ 61 (182)
+|.|.|| ....-...|++.+.+.-.|..+.+ ..+.+-|+|... ++..++|+.
T Consensus 1 t~~v~~m-~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGM-TCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEEST-TSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCc-ccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 5788888 444456788999998877887776 468888888744 556666654
No 161
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=75.67 E-value=1.9 Score=38.03 Aligned_cols=7 Identities=71% Similarity=0.767 Sum_probs=2.9
Q ss_pred CCCCCCC
Q 030155 170 RYRSRSP 176 (182)
Q Consensus 170 r~rsrsp 176 (182)
++||||+
T Consensus 461 rsRsRs~ 467 (653)
T KOG2548|consen 461 RSRSRSE 467 (653)
T ss_pred hhhhccc
Confidence 3444444
No 162
>PRK02886 hypothetical protein; Provisional
Probab=75.01 E-value=9.4 Score=25.59 Aligned_cols=54 Identities=15% Similarity=0.301 Sum_probs=36.2
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCcc
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 67 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~ 67 (182)
..+-.||+-+| .. . .-+.+||.|..+.=...|+++ |-+.++|++.++.|....|
T Consensus 5 R~glIVyl~~~-k~---~----r~LrkyG~I~Y~Skr~kYvvl-Yvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 5 RQGIIVWLHSL-KQ---A----KQLRKFGNVHYVSKRLKYAVL-YCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred eeEEEEEEeec-Hh---H----HHHhhcCcEEEEeccccEEEE-EECHHHHHHHHHHHhcCCC
Confidence 34456677666 32 2 235689999988654556654 6678899998888877554
No 163
>KOG4357 consensus Uncharacterized conserved protein (involved in mesoderm differentiation in humans) [General function prediction only]
Probab=70.82 E-value=22 Score=25.55 Aligned_cols=64 Identities=25% Similarity=0.257 Sum_probs=42.1
Q ss_pred CCCEEEEccCCCCCCCHHHH-------H-----HhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCC
Q 030155 6 PTKTLFVINFDPIRTRERDI-------K-----RHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L-------~-----~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 69 (182)
.+-.+||+-.+|..-++.++ . .+|...-.+....|--.-|+.-|.+-+.|-.|...|-|..++.
T Consensus 65 ktlmlfv~v~~psqp~~kd~rpftee~tqiwq~qlfn~~~dlq~fii~ddraifm~kdge~a~e~k~fll~qd~~a 140 (164)
T KOG4357|consen 65 KTLMLFVGVSDPSQPDEKDIRPFTEEITQIWQGQLFNAHVDLQRFIIDDDRAIFMFKDGEQAFEAKDFLLGQDFCA 140 (164)
T ss_pred ceEEEEEEecCCCCCChhhccchhHHHHHHHHHHhhccccceEEEEecCCeEEEEEeChhHHHHHHHHhhccchhe
Confidence 45567888766555555444 2 2333333444444456678889999999999999888887754
No 164
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=70.62 E-value=10 Score=24.39 Aligned_cols=39 Identities=13% Similarity=0.424 Sum_probs=29.5
Q ss_pred hhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCcc
Q 030155 28 HFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 67 (182)
Q Consensus 28 ~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~ 67 (182)
-+.+||.|..+.=...|+++ |-+.++|+..++.|....|
T Consensus 16 ~L~kfG~i~Y~Skk~kYvvl-Yvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSKKMKYVVL-YVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEECCccEEEE-EECHHHHHHHHHHHhcCCC
Confidence 46689999988655566654 6678999999888877655
No 165
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.51 E-value=0.53 Score=40.55 Aligned_cols=70 Identities=4% Similarity=-0.070 Sum_probs=54.3
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeec
Q 030155 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 79 (182)
...|+..| +..+++.+|..+|+-||-|..+.+. +..+||... ..+|+.||..+.-..+.|..+.|.++..
T Consensus 4 ~~~~l~d~-~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~-~~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDS-VASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAK-KANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhc-ccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeee-ccCcccccCHHHHhhhhhhhhhhhcCch
Confidence 34567778 7788999999999999998887772 336777665 4677888887777788888888888764
No 166
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=70.23 E-value=0.68 Score=40.96 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=50.4
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcE
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRV 71 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 71 (182)
..++.|||.|+ +.+++-.+|+.++..+--+..+.+. ..+++|+|.--.....|+.+||+..+....
T Consensus 229 hke~sll~rni-~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 229 HKECSLLVRNI-LPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred hHHHHHHHhcc-CCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 34678999999 6689999999999998766666662 346788998777777777778887665443
No 167
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=69.82 E-value=5.6 Score=30.48 Aligned_cols=36 Identities=22% Similarity=0.558 Sum_probs=30.8
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE
Q 030155 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI 40 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i 40 (182)
......+++.++ +..++..++..+|..+|.+..+.+
T Consensus 222 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 257 (306)
T COG0724 222 LEKSDNLYVGNL-PLKTAEEELADLFKSRGDIVRASL 257 (306)
T ss_pred ccccceeecccc-ccccchhHHHHhccccccceeeec
Confidence 345678899999 889999999999999999977666
No 168
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=68.35 E-value=2.8 Score=30.34 Aligned_cols=70 Identities=14% Similarity=0.192 Sum_probs=46.0
Q ss_pred CEEEEccC-CCCCCCHHHHHHhh----ccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030155 8 KTLFVINF-DPIRTRERDIKRHF----EPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 8 ~~l~V~nL-~p~~~~e~~L~~~F----~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
....||.+ ++..++.+.|...+ ...+.+.-..|..++.+++|.+.++++.++. .....+.+..|.++.-.
T Consensus 16 ~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 16 QLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWS 90 (153)
T ss_pred CeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhc
Confidence 34555554 22235555555554 4456667677788999999999999999986 35566777666665433
No 169
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=67.94 E-value=1.5 Score=36.67 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=37.1
Q ss_pred CHHHHHHhhccCCceEEEEE----eCCEEEEEeCCHHHHHHHHHhcCCC
Q 030155 21 RERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRS 65 (182)
Q Consensus 21 ~e~~L~~~F~~~G~i~~~~i----~~g~afV~f~~~~~a~~Ai~~l~g~ 65 (182)
+...|.+++++.|+|..-.| +-|.+||.+-..++++++++.|.+.
T Consensus 274 ~~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 274 PPPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 35778888899998776554 6788999999999999999988764
No 170
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=65.62 E-value=4 Score=32.49 Aligned_cols=36 Identities=25% Similarity=0.495 Sum_probs=29.5
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE
Q 030155 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI 40 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i 40 (182)
.....+||+-|| |..++++.|..+..+.|-+..+.+
T Consensus 37 ~~eKd~lfl~Nv-p~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 37 SNEKDCLFLVNV-PLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccccceeeecc-cccccHHHHHHHHHHhhhhhheec
Confidence 345678999999 888999999999999986665554
No 171
>PF14893 PNMA: PNMA
Probab=65.51 E-value=7.5 Score=32.63 Aligned_cols=49 Identities=20% Similarity=0.421 Sum_probs=33.8
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhcc-CCceEEEEE---------eCCEEEEEeCCH
Q 030155 3 NQRPTKTLFVINFDPIRTRERDIKRHFEP-YGNVLHVRI---------RRNFAFVQFETQ 52 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~-~G~i~~~~i---------~~g~afV~f~~~ 52 (182)
+.++-+.|.|.+| |.++++++|++.+.. +-++-...| ...-|+|+|...
T Consensus 14 ~~~~~r~lLv~gi-P~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 14 GVDPQRALLVLGI-PEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred CcChhhhheeecC-CCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 4456678999999 999999998888764 323333333 244688888753
No 172
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=64.19 E-value=12 Score=23.39 Aligned_cols=18 Identities=17% Similarity=0.514 Sum_probs=15.5
Q ss_pred HHHHHhhccCCceEEEEE
Q 030155 23 RDIKRHFEPYGNVLHVRI 40 (182)
Q Consensus 23 ~~L~~~F~~~G~i~~~~i 40 (182)
++|+++|+..|+|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 679999999999887765
No 173
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=62.23 E-value=13 Score=28.13 Aligned_cols=7 Identities=71% Similarity=0.743 Sum_probs=3.0
Q ss_pred CCCCCCC
Q 030155 172 RSRSPVR 178 (182)
Q Consensus 172 rsrsp~~ 178 (182)
+|+|+.+
T Consensus 101 rSRS~~R 107 (182)
T PF06495_consen 101 RSRSRHR 107 (182)
T ss_pred hccCccc
Confidence 4444443
No 174
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=61.82 E-value=34 Score=22.86 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=30.0
Q ss_pred HHHHHHhhccCC-ceEEEEEeCC----EEEEEeCCHHHHHHHHHhc
Q 030155 22 ERDIKRHFEPYG-NVLHVRIRRN----FAFVQFETQEEATKALEST 62 (182)
Q Consensus 22 e~~L~~~F~~~G-~i~~~~i~~g----~afV~f~~~~~a~~Ai~~l 62 (182)
.+.++++++++| +|+.+.+..| ..++++.+.+.|.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHH
Confidence 356778888876 7777777544 5778999999888776444
No 175
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=61.32 E-value=18 Score=32.05 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=44.7
Q ss_pred CCCEEEEccCCCCCCC---HHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEE
Q 030155 6 PTKTLFVINFDPIRTR---ERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 72 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~---e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 72 (182)
|..-=+|||| +.-.. ...|.++=++||+|-.++|. ..-.|...+.+.|++|+.. |+..+.++..
T Consensus 31 P~~lPiIGnl-~~l~~~~~h~~~~~ls~~yGpi~tl~lG-~~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 31 PPPLPIIGNL-HQLGSLPPHRSFRKLSKKYGPVFTLRLG-SVPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred CCCCCccccH-HHcCCCchhHHHHHHHHHhCCeEEEEec-CceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 3444568998 43222 23455666689999988772 2246777889999999985 8899988875
No 176
>PRK02302 hypothetical protein; Provisional
Probab=59.84 E-value=20 Score=24.14 Aligned_cols=38 Identities=18% Similarity=0.462 Sum_probs=28.6
Q ss_pred hccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCcc
Q 030155 29 FEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 67 (182)
Q Consensus 29 F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~ 67 (182)
+.+||.|..+.=...|+++ |-+.++|++.++.|....|
T Consensus 23 LrkfG~I~Y~Skk~kYvvl-Yvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 23 LSKYGDIVYHSKRSRYLVL-YVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred HhhcCcEEEEeccccEEEE-EECHHHHHHHHHHHhcCCC
Confidence 5689999988654556654 6678999999888877554
No 177
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=59.78 E-value=26 Score=23.25 Aligned_cols=50 Identities=22% Similarity=0.323 Sum_probs=34.4
Q ss_pred EEccCCCCCCCHHHHHHhhcc-CC-ceEEEEE---eCC--EEEEEeCCHHHHHHHHHh
Q 030155 11 FVINFDPIRTRERDIKRHFEP-YG-NVLHVRI---RRN--FAFVQFETQEEATKALES 61 (182)
Q Consensus 11 ~V~nL~p~~~~e~~L~~~F~~-~G-~i~~~~i---~~g--~afV~f~~~~~a~~Ai~~ 61 (182)
|+--+ ...++..+|++.+++ || .|..|.. +.+ -|||.+....+|.+....
T Consensus 24 y~F~V-~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 24 LTFIV-DRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEE-CCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 33344 346889999988887 55 4555544 233 599999988888877554
No 178
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=59.43 E-value=29 Score=20.38 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=30.3
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHH
Q 030155 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEE 54 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~ 54 (182)
..++|.+. ....+.++|.+++..+|......+.....+|.+.+...
T Consensus 2 ~~~~i~g~-~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~ 47 (72)
T cd00027 2 LTFVITGD-LPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAG 47 (72)
T ss_pred CEEEEEec-CCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCC
Confidence 46777777 33678899999999998644334444555555554443
No 179
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=59.01 E-value=32 Score=21.81 Aligned_cols=39 Identities=18% Similarity=0.327 Sum_probs=28.6
Q ss_pred HHHHHhhccCCceEEEEE--e--CCEEEEEeCCHHHHHHHHHhc
Q 030155 23 RDIKRHFEPYGNVLHVRI--R--RNFAFVQFETQEEATKALEST 62 (182)
Q Consensus 23 ~~L~~~F~~~G~i~~~~i--~--~g~afV~f~~~~~a~~Ai~~l 62 (182)
.+|.+++.++| +..+.| . -++.|+.+.+.+.++++++.|
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 45777788888 444555 3 457888888999988888765
No 180
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=58.38 E-value=31 Score=21.75 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=32.2
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCC
Q 030155 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET 51 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~ 51 (182)
.+|.|.++ ...--...++..+.+...|..+.+ ..+.++|+|++
T Consensus 4 ~~l~v~~M-tC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGM-TCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDS 48 (71)
T ss_pred EEEEECCc-CcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcC
Confidence 46778888 444445778888888877777665 57779999997
No 181
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=57.38 E-value=37 Score=27.28 Aligned_cols=72 Identities=13% Similarity=0.192 Sum_probs=39.5
Q ss_pred CCCEEEEccCCCCCCC----HHHHHHhhccCC-ceEEEEEe---CCEEEEEe-CCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030155 6 PTKTLFVINFDPIRTR----ERDIKRHFEPYG-NVLHVRIR---RNFAFVQF-ETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~----e~~L~~~F~~~G-~i~~~~i~---~g~afV~f-~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
....||||+| ....- .+.|...+-+.+ .|+.+.+. .||+.-.. .+.++.+.+|+.+.+..+....+-|-+
T Consensus 36 ~~~vvfiGGL-gdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL~Gh 114 (299)
T KOG4840|consen 36 SVKVVFIGGL-GDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVLVGH 114 (299)
T ss_pred EEEEEEEccc-CCCccccccHHHHHHHHhhccceeeeeeccccccccccccccccHHHHHHHHHHhhccCcccceEEEec
Confidence 3567999998 43332 345555555444 45555553 34443222 256667777776666665444444444
Q ss_pred ee
Q 030155 77 AL 78 (182)
Q Consensus 77 a~ 78 (182)
+.
T Consensus 115 ST 116 (299)
T KOG4840|consen 115 ST 116 (299)
T ss_pred Cc
Confidence 43
No 182
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=57.07 E-value=18 Score=29.76 Aligned_cols=71 Identities=14% Similarity=0.247 Sum_probs=51.1
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe---------------CCEEEEEeCCHHHHHHH----HHhcCC--C
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---------------RNFAFVQFETQEEATKA----LESTDR--S 65 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~---------------~g~afV~f~~~~~a~~A----i~~l~g--~ 65 (182)
++.|.+.|| ...++-..+...|.+||+|+.|.|. .....+.|-+.+.|-.. ++.|.. +
T Consensus 15 TRSLLfeNv-~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 15 TRSLLFENV-NNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eHHHHHhhc-cccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 556778899 4678888888999999999999883 24578899888877653 233322 3
Q ss_pred ccCCcEEEEEEee
Q 030155 66 KLVDRVISVEYAL 78 (182)
Q Consensus 66 ~~~g~~l~V~~a~ 78 (182)
.+....|.|.+..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 4566677777765
No 183
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=54.74 E-value=8.8 Score=25.77 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=20.2
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhc
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFE 30 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~ 30 (182)
...++|.|.|| |..+.+++|++.++
T Consensus 50 vs~rtVlvsgi-p~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGI-PDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCC-CCCCChhhheeeEE
Confidence 35678999999 88899999887654
No 184
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.89 E-value=7.2 Score=30.57 Aligned_cols=30 Identities=30% Similarity=0.694 Sum_probs=19.6
Q ss_pred HHHHHhhc-cCCceEEEEEeCCEEEEEeCCH
Q 030155 23 RDIKRHFE-PYGNVLHVRIRRNFAFVQFETQ 52 (182)
Q Consensus 23 ~~L~~~F~-~~G~i~~~~i~~g~afV~f~~~ 52 (182)
++|.+.|. .||.-..-.+.+.||||+|.+.
T Consensus 89 edL~~EF~~~~~~~~~~~~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 89 EDLAQEFDKSYGKNIIQPASRPYAFIEFDTF 119 (216)
T ss_pred HHHHHHHHHhcccccCCccCCCeeEEehhHH
Confidence 56655554 4664333334689999999864
No 185
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=53.37 E-value=41 Score=24.71 Aligned_cols=31 Identities=10% Similarity=0.266 Sum_probs=25.0
Q ss_pred eEEEEE---eCCEEEEEeCCHHHHHHHHHhcCCC
Q 030155 35 VLHVRI---RRNFAFVQFETQEEATKALESTDRS 65 (182)
Q Consensus 35 i~~~~i---~~g~afV~f~~~~~a~~Ai~~l~g~ 65 (182)
|..|.+ .+||.||+....+++..+|..+.+.
T Consensus 36 i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPELKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCCCCcEEEEEEEChHHHHHHHhcCCCE
Confidence 556655 3799999999889999999888764
No 186
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=53.05 E-value=16 Score=23.36 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=34.3
Q ss_pred HHHHHhhccCC-ceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030155 23 RDIKRHFEPYG-NVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 23 ~~L~~~F~~~G-~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
++|++.|.+.| ++..+.-+ -..-||+.....+... .|+-+.|+|..+.|+-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888888 66666542 2356677665433333 456678899998887654
No 187
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=53.00 E-value=24 Score=22.35 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=34.8
Q ss_pred HHHHHhhccCC-ceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeec
Q 030155 23 RDIKRHFEPYG-NVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (182)
Q Consensus 23 ~~L~~~F~~~G-~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 79 (182)
++|.+.|...| +|..+.-+ -..-||+++...+ ..+.|+=..|++..|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCCC
Confidence 46777787777 56665431 2366777775544 2334566778899988887654
No 188
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=52.34 E-value=34 Score=22.41 Aligned_cols=33 Identities=12% Similarity=0.354 Sum_probs=23.7
Q ss_pred ceEEEEE---eCCEEEEEeCCHHHHHHHHHhcCCCc
Q 030155 34 NVLHVRI---RRNFAFVQFETQEEATKALESTDRSK 66 (182)
Q Consensus 34 ~i~~~~i---~~g~afV~f~~~~~a~~Ai~~l~g~~ 66 (182)
.|..+.. .+||-|||=.+..++..|+..+.+..
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 3445444 48999999999999999998876643
No 189
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=51.52 E-value=9.9 Score=21.07 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=10.5
Q ss_pred CCCCHHHHHHhhccCCc
Q 030155 18 IRTRERDIKRHFEPYGN 34 (182)
Q Consensus 18 ~~~~e~~L~~~F~~~G~ 34 (182)
..+++++|+++|.+...
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 36889999999988653
No 190
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=50.56 E-value=35 Score=22.68 Aligned_cols=64 Identities=23% Similarity=0.258 Sum_probs=25.1
Q ss_pred EEEccCCCCCCCHHHHHHhhccCCceEEEEEe--CCEEEEEeCC----HHHHHHHHHhcCCCccCCcEEEEE
Q 030155 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFET----QEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 10 l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--~g~afV~f~~----~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
|-.|+|+|..+. +++--+++-..|-.+.|+ ...|||.|.. .+..-++++.|....+....|.|+
T Consensus 3 lkfg~It~eeA~--~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~kpEVi~ek~lTve 72 (88)
T PF11491_consen 3 LKFGNITPEEAM--VKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFKPEVIEEKELTVE 72 (88)
T ss_dssp EE--S-TTTTTH--HHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTTT-SS-------S
T ss_pred cccCCCCHHHHH--HHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcChhheeeccccHH
Confidence 445788554333 334446666667666663 3358999984 477777888888888877777765
No 191
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=50.46 E-value=22 Score=22.49 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=18.9
Q ss_pred CEEEEEeCCHHHHHHHHHhcCCCcc
Q 030155 43 NFAFVQFETQEEATKALESTDRSKL 67 (182)
Q Consensus 43 g~afV~f~~~~~a~~Ai~~l~g~~~ 67 (182)
.+.+|.|.+..+|.+|-+.|....|
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 4678999999999888777665443
No 192
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=49.41 E-value=3.8 Score=32.35 Aligned_cols=65 Identities=28% Similarity=0.342 Sum_probs=46.6
Q ss_pred CCCCEEEEcc----CCCCCCCHHHHHHhhccCCceEEEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCc
Q 030155 5 RPTKTLFVIN----FDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDR 70 (182)
Q Consensus 5 ~~~~~l~V~n----L~p~~~~e~~L~~~F~~~G~i~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 70 (182)
+...+++.|+ | -..++++.++.+|...|.|..+.+ +..++|+.+.-....-.|+...++..+.-.
T Consensus 78 e~q~~~r~G~shapl-d~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~ 153 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPL-DERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQK 153 (267)
T ss_pred hhhcccccCCCcchh-hhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCC
Confidence 3445666677 6 356778888888999888888777 356889988877777777776666554433
No 193
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=48.71 E-value=60 Score=19.70 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=29.2
Q ss_pred CHHHHHHhhccCC-ceEEEEE----eCCEEEEEeCCHHHHHHHHHhcCCCc
Q 030155 21 RERDIKRHFEPYG-NVLHVRI----RRNFAFVQFETQEEATKALESTDRSK 66 (182)
Q Consensus 21 ~e~~L~~~F~~~G-~i~~~~i----~~g~afV~f~~~~~a~~Ai~~l~g~~ 66 (182)
.-.+|-++|.+.| .|..+.+ .+++.-+.+.+.+.|.++|+. +|.+
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH-CCCE
Confidence 4577888888877 6776655 134445566777777777764 4443
No 194
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=47.76 E-value=63 Score=28.65 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=30.8
Q ss_pred HHHHHHhhc----cCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcC
Q 030155 22 ERDIKRHFE----PYGNVLHVRIR-------RNFAFVQFETQEEATKALESTD 63 (182)
Q Consensus 22 e~~L~~~F~----~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~ 63 (182)
.-+|..+|. .+|-|+++.|. ....++.|.+.++|..|+..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 346777665 57778888771 3456789999999999987754
No 195
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=47.64 E-value=36 Score=21.97 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=19.9
Q ss_pred EEEEeCCEEEEEeCCHHHHHHHHHhcCCCcc
Q 030155 37 HVRIRRNFAFVQFETQEEATKALESTDRSKL 67 (182)
Q Consensus 37 ~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~ 67 (182)
.+.+..+..+|.|+..++-++|.. |.|..|
T Consensus 49 ~~~~~~~~~i~~~~gi~~r~~Ae~-l~g~~l 78 (84)
T PF01782_consen 49 SVRPHGKSLIVKFEGIDDREAAEA-LRGCEL 78 (84)
T ss_dssp EEEEETTEEEEEETT--SHHHHHT-TTT-EE
T ss_pred EEEEeCCEEEEEEcCCCCHHHHHh-hCCCEE
Confidence 333467899999999999988865 666543
No 196
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=44.79 E-value=14 Score=32.91 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=34.9
Q ss_pred eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030155 41 RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 41 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
+..++++.|++...+.+|+..++|..+.+..+.|..+...
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 3579999999999999999999999998888888777644
No 197
>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]
Probab=42.75 E-value=70 Score=26.36 Aligned_cols=57 Identities=25% Similarity=0.241 Sum_probs=37.8
Q ss_pred CCCEEEEc---cCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCC
Q 030155 6 PTKTLFVI---NFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS 65 (182)
Q Consensus 6 ~~~~l~V~---nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~ 65 (182)
.-+.+|+. |-+...+.+++|+++++...++.-| -..|||+|.-.+++..-++++.+.
T Consensus 160 ~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVV---vDEAYidFsg~~S~~~lV~kYpNL 219 (375)
T KOG0633|consen 160 KIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVV---VDEAYIDFSGVESRMKLVKKYPNL 219 (375)
T ss_pred cceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEE---EeeeeEeeccccccchHhHhCCce
Confidence 34566664 4333456788999999887432222 246999999888887777776653
No 198
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.54 E-value=84 Score=23.71 Aligned_cols=46 Identities=17% Similarity=0.136 Sum_probs=37.8
Q ss_pred cCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhc
Q 030155 14 NFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALEST 62 (182)
Q Consensus 14 nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l 62 (182)
+| +..+.++-|.++-+-+|.|.+. -...-.+-|.+.+..+.||+.|
T Consensus 118 ~l-~~~i~~erl~ei~E~~gvI~Ef--ee~~~V~I~Gdke~Ik~aLKe~ 163 (169)
T PF09869_consen 118 KL-KKPIQEERLQEISEWHGVIFEF--EEDDKVVIEGDKERIKKALKEF 163 (169)
T ss_pred ec-CccchHHHHHHHHHHhceeEEe--cCCcEEEEeccHHHHHHHHHHH
Confidence 67 6789999999999999988776 3344577899999999999875
No 199
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=38.90 E-value=67 Score=27.29 Aligned_cols=51 Identities=14% Similarity=0.041 Sum_probs=36.2
Q ss_pred CHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcE
Q 030155 21 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 71 (182)
Q Consensus 21 ~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 71 (182)
+-++|+.+|.+---+..++.-..--||.|.+..+.++-|...|+..+.+..
T Consensus 263 ~Y~~Le~HF~~~hy~ct~qtc~~~k~~vf~~~~el~~h~~~~h~~~~~~~~ 313 (493)
T COG5236 263 SYEDLEAHFRNAHYCCTFQTCRVGKCYVFPYHTELLEHLTRFHKVNARLSE 313 (493)
T ss_pred CHHHHHHHhhcCceEEEEEEEecCcEEEeccHHHHHHHHHHHhhcccccCc
Confidence 347788888876555555543444578899999988888888887765543
No 200
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=38.47 E-value=10 Score=23.97 Aligned_cols=38 Identities=18% Similarity=0.324 Sum_probs=26.0
Q ss_pred HHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhc
Q 030155 23 RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALEST 62 (182)
Q Consensus 23 ~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l 62 (182)
++|.+.|..+.....+ .+-.+|.-|.+.++|-.++..+
T Consensus 27 ~~v~~~~~~~~~f~k~--vkL~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKI--VKLKAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhh--hhhhhccCCCCHHHHHHHHHHh
Confidence 5777777765433332 2345999999999888877654
No 201
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=38.22 E-value=34 Score=25.30 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=32.5
Q ss_pred EEEEccCCCCCCCHHHHHHhhcc-CCc-eEEEEE----eCCEEEEEeCCHHHHHHHHHhcCC
Q 030155 9 TLFVINFDPIRTRERDIKRHFEP-YGN-VLHVRI----RRNFAFVQFETQEEATKALESTDR 64 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~-~G~-i~~~~i----~~g~afV~f~~~~~a~~Ai~~l~g 64 (182)
.+|+|+|.-+..+-++|+..+.. |+. +..+.. +-+-+.|+|.-+.+|...|..|-.
T Consensus 6 la~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~~~~~~~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 6 LAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVRKVEPWNSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred EEEECChhhhHHHHHHHHHHHHHHHhcccccceeeccccCceEEEEEechHHHHHHHHHHhh
Confidence 35668883222223445444443 222 223333 346899999999999888776643
No 202
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=37.85 E-value=95 Score=19.38 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=29.0
Q ss_pred CCceEEEEEeCCEEEEEeCCH-HHH---HHHHHhcCC--CccCCcEEEEEEeecC
Q 030155 32 YGNVLHVRIRRNFAFVQFETQ-EEA---TKALESTDR--SKLVDRVISVEYALKD 80 (182)
Q Consensus 32 ~G~i~~~~i~~g~afV~f~~~-~~a---~~Ai~~l~g--~~~~g~~l~V~~a~~~ 80 (182)
.|.|+.....+||+||+-.+. +++ ..||.. .+ ..-.|..|..++....
T Consensus 3 ~G~Vk~f~~~kGfGFI~~~~g~~dvfvH~s~~~~-~g~~~l~~G~~V~f~~~~~~ 56 (68)
T TIGR02381 3 IGIVKWFNNAKGFGFICPEGVDGDIFAHYSTIQM-DGYRTLKAGQKVQFEVVQGP 56 (68)
T ss_pred CeEEEEEeCCCCeEEEecCCCCccEEEEHHHhhh-cCCCCCCCCCEEEEEEEECC
Confidence 477777777899999977652 332 233432 23 2335777777766644
No 203
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=37.84 E-value=54 Score=27.78 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=16.1
Q ss_pred CCCCCHHHHHHhhccC-CceEEEEE
Q 030155 17 PIRTRERDIKRHFEPY-GNVLHVRI 40 (182)
Q Consensus 17 p~~~~e~~L~~~F~~~-G~i~~~~i 40 (182)
...++.++|+++|.+| ..-..|.|
T Consensus 254 ~~~~t~~~i~~~y~~~Y~~epfVrv 278 (349)
T COG0002 254 KDLVTLEELHAAYEEFYAGEPFVRV 278 (349)
T ss_pred CCCCCHHHHHHHHHHHhCCCCeEEE
Confidence 4457899999999874 43334443
No 204
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=37.44 E-value=29 Score=28.17 Aligned_cols=69 Identities=22% Similarity=0.335 Sum_probs=45.4
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhc--------CCCccCCcEEEEEEeec
Q 030155 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALEST--------DRSKLVDRVISVEYALK 79 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l--------~g~~~~g~~l~V~~a~~ 79 (182)
-.|+|-+|| .++.+++.++|...-.+.. .+++.||---+.+...+|++.- ++..+..+.|.+.+.-+
T Consensus 174 iViiIDdLD--R~~~~~i~~~l~~ik~~~~---~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP 248 (325)
T PF07693_consen 174 IVIIIDDLD--RCSPEEIVELLEAIKLLLD---FPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLP 248 (325)
T ss_pred EEEEEcchh--cCCcHHHHHHHHHHHHhcC---CCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeC
Confidence 456678884 5677766666665332222 2677888777888888888764 33455667778877776
Q ss_pred CC
Q 030155 80 DD 81 (182)
Q Consensus 80 ~~ 81 (182)
..
T Consensus 249 ~~ 250 (325)
T PF07693_consen 249 PP 250 (325)
T ss_pred CC
Confidence 54
No 205
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=37.40 E-value=53 Score=25.21 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=31.0
Q ss_pred CCHHHHHHhhccC-CceEEEEE---------eCCEEEEEeCCHHHHHHHHHhcCCCcc
Q 030155 20 TRERDIKRHFEPY-GNVLHVRI---------RRNFAFVQFETQEEATKALESTDRSKL 67 (182)
Q Consensus 20 ~~e~~L~~~F~~~-G~i~~~~i---------~~g~afV~f~~~~~a~~Ai~~l~g~~~ 67 (182)
+++++|..+.... |.+..|.+ -+|-.||+|...+.|.++++. +....
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~ 174 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKG 174 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhc
Confidence 3444444443322 68888887 157789999999999998764 44333
No 206
>PRK12450 foldase protein PrsA; Reviewed
Probab=37.34 E-value=66 Score=26.53 Aligned_cols=43 Identities=23% Similarity=0.503 Sum_probs=32.1
Q ss_pred CCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcC--CCcc
Q 030155 19 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD--RSKL 67 (182)
Q Consensus 19 ~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~--g~~~ 67 (182)
.+|+++|+++|..|.+ .+.+ .+|.+.+.+.|+.++..|. |..|
T Consensus 132 ~Vtd~evk~~y~~~~~--~~~~----~~I~~~~~~~A~~i~~~l~~~G~dF 176 (309)
T PRK12450 132 TISKKDYRQAYDAYTP--TMTA----EIMQFEKEEDAKAALEAVKAEGADF 176 (309)
T ss_pred CCCHHHHHHHHHHhCc--ccee----EEEEeCCHHHHHHHHHHHHhcCCCH
Confidence 4799999999998753 2222 3578899999999999885 4444
No 207
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=37.23 E-value=36 Score=28.25 Aligned_cols=57 Identities=18% Similarity=0.295 Sum_probs=27.8
Q ss_pred CCCCEEEEccCCCCCC-C---HHHHHHhhccCC-ceEEEEE---eCCEEEEEeC-CHHHHHHHHHhc
Q 030155 5 RPTKTLFVINFDPIRT-R---ERDIKRHFEPYG-NVLHVRI---RRNFAFVQFE-TQEEATKALEST 62 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~-~---e~~L~~~F~~~G-~i~~~~i---~~g~afV~f~-~~~~a~~Ai~~l 62 (182)
.++..||||+| .... + -.+|.+.+.+-+ .|..+.| -.||++-..+ +.++..++|+.|
T Consensus 32 ~~~~llfIGGL-tDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL~~D~~eI~~~v~yl 97 (303)
T PF08538_consen 32 APNALLFIGGL-TDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSLDRDVEEIAQLVEYL 97 (303)
T ss_dssp SSSEEEEE--T-T--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--HHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCC-CCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchhhhHHHHHHHHHHHH
Confidence 57789999998 4322 1 467877786554 4556666 2566655444 344555555533
No 208
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=37.09 E-value=86 Score=22.54 Aligned_cols=47 Identities=23% Similarity=0.195 Sum_probs=29.7
Q ss_pred CCceEEEEE---eCCEEEEEeCC--------HHHHHHHHHhcCCCccCCcEEEEEEee
Q 030155 32 YGNVLHVRI---RRNFAFVQFET--------QEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 32 ~G~i~~~~i---~~g~afV~f~~--------~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
.|.+..-.| ..--|||+|++ -+-|...++.+|.+.--|..+.|++-.
T Consensus 5 vG~~l~GkItgI~~yGAFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~ 62 (129)
T COG1098 5 VGSKLKGKITGITPYGAFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLD 62 (129)
T ss_pred ccceEEEEEEeeEecceEEEecCCCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEEe
Confidence 355554444 23347888886 245666777777766677777777644
No 209
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=37.05 E-value=95 Score=27.95 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=26.4
Q ss_pred CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030155 42 RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 42 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
+|-| +.|+++++|.+||. ++..-.|..|.|.+.=++
T Consensus 383 ~G~A-~VF~see~a~~ai~--~g~i~~gdVvViRyeGPk 418 (535)
T TIGR00110 383 EGPA-KVFESEEEALEAIL--GGKIKEGDVVVIRYEGPK 418 (535)
T ss_pred EEeE-EEECCHHHHHHHHh--cCCCCCCeEEEEeCCCCC
Confidence 3444 45999999999995 566667777777776554
No 210
>PF05274 Baculo_E25: Occlusion-derived virus envelope protein E25; InterPro: IPR007938 This family consists of several nucleopolyhedrovirus occlusion-derived virus envelope E25 proteins. The N terminus of this protein is extremely hydrophobic, studies suggest that this defined hydrophobic domain is sufficient to direct the protein to induced membrane microvesicles within a baculovirus-infected cell nucleus and the viral envelope. In addition, movement of the protein into the nuclear envelope may initiate through cytoplasmic membranes, such as endoplasmic reticulum, and that transport into the nucleus may be mediated through the outer and inner nuclear membrane [].; GO: 0019031 viral envelope, 0042025 host cell nucleus
Probab=36.57 E-value=46 Score=25.15 Aligned_cols=33 Identities=9% Similarity=0.206 Sum_probs=25.7
Q ss_pred CEEEEEeCCHHHHHHHHHhcCCCccC-CcEEEEE
Q 030155 43 NFAFVQFETQEEATKALESTDRSKLV-DRVISVE 75 (182)
Q Consensus 43 g~afV~f~~~~~a~~Ai~~l~g~~~~-g~~l~V~ 75 (182)
.|+++.|.+-..||..|++.+-.+|. ...|-|+
T Consensus 143 sypi~VyT~Ns~aQl~LkEw~YtqiNd~~TlfvK 176 (182)
T PF05274_consen 143 SYPITVYTNNSSAQLKLKEWGYTQINDSGTLFVK 176 (182)
T ss_pred cccEEEEEcChHHhHHHHhcCceEEcccceEEEe
Confidence 47888999999999999988877774 3455554
No 211
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=36.21 E-value=60 Score=20.40 Aligned_cols=27 Identities=33% Similarity=0.616 Sum_probs=20.7
Q ss_pred CHHHHHHhhccCCceEEEEE------eCCEEEE
Q 030155 21 RERDIKRHFEPYGNVLHVRI------RRNFAFV 47 (182)
Q Consensus 21 ~e~~L~~~F~~~G~i~~~~i------~~g~afV 47 (182)
-+.+|+.+|-+--+|.++.| .+|-|||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 35678888888888988887 3677776
No 212
>PRK11901 hypothetical protein; Reviewed
Probab=35.96 E-value=1.2e+02 Score=25.43 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=35.2
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE----eCC---EE--EEEeCCHHHHHHHHHhcCCCc
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----RRN---FA--FVQFETQEEATKALESTDRSK 66 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i----~~g---~a--fV~f~~~~~a~~Ai~~l~g~~ 66 (182)
.-+|-|..+ ..++.|..|..+++ +..+++ ..| |. +-.|.+.++|..||..|-...
T Consensus 245 ~YTLQL~Aa----s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 245 HYTLQLSSA----SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CeEEEeecC----CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 334555444 35788888887775 333433 223 33 337999999999999887543
No 213
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=35.42 E-value=1.4e+02 Score=20.27 Aligned_cols=58 Identities=9% Similarity=0.219 Sum_probs=40.1
Q ss_pred CCEEEEccCC-CCCC-CHHHHHHhhccCC-ceEEEEEeCCEEEEEeCCHHHHHHHHHhcCC
Q 030155 7 TKTLFVINFD-PIRT-RERDIKRHFEPYG-NVLHVRIRRNFAFVQFETQEEATKALESTDR 64 (182)
Q Consensus 7 ~~~l~V~nL~-p~~~-~e~~L~~~F~~~G-~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g 64 (182)
...|.|.... ...+ +...|...+.+-| .++.+....+-..|.|.+.++-.+|.+.|..
T Consensus 31 ~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i~~~~~~llirf~~~~~Ql~Ak~~L~~ 91 (101)
T PF13721_consen 31 DPAVQISASSAGVQLPDAFQVEQALKAAGIAVKSIEQEGDSLLIRFDSTDQQLKAKDVLSK 91 (101)
T ss_pred CCcEEEecCCCCccCChHHHHHHHHHHCCCCcceEEeeCCEEEEEECCHHHHHHHHHHHHH
Confidence 4456665531 1111 2358889998888 6677777788899999999888877776554
No 214
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=34.98 E-value=58 Score=26.41 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=22.6
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCce
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGNV 35 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i 35 (182)
.....|+|| |++++..-|.+++...-.+
T Consensus 95 ~~~~vVaNl-PY~Isspii~kll~~~~~~ 122 (259)
T COG0030 95 QPYKVVANL-PYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCCEEEEcC-CCcccHHHHHHHHhccCcc
Confidence 345679999 9999999999888876544
No 215
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.97 E-value=1.1e+02 Score=18.58 Aligned_cols=46 Identities=15% Similarity=0.277 Sum_probs=26.8
Q ss_pred CHHHHHHhhccCC-ceEEEEE----eCCEEEE--EeC--CHHHHHHHHHhcCCCcc
Q 030155 21 RERDIKRHFEPYG-NVLHVRI----RRNFAFV--QFE--TQEEATKALESTDRSKL 67 (182)
Q Consensus 21 ~e~~L~~~F~~~G-~i~~~~i----~~g~afV--~f~--~~~~a~~Ai~~l~g~~~ 67 (182)
.-..|.++|.++| .|..+.. ..+.++| .++ +.+.+.++|+. +|.++
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~-~G~~v 68 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRR-AGYEV 68 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHH-CCCee
Confidence 4567888898887 6766644 1245444 443 55566666654 45443
No 216
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=34.96 E-value=1.2e+02 Score=21.06 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=27.0
Q ss_pred HHHHhhccCCceE--EEEE---e------------------CCEEEEEeCCHHHHHHHHHhc
Q 030155 24 DIKRHFEPYGNVL--HVRI---R------------------RNFAFVQFETQEEATKALEST 62 (182)
Q Consensus 24 ~L~~~F~~~G~i~--~~~i---~------------------~g~afV~f~~~~~a~~Ai~~l 62 (182)
...++|..||.+. +|+- + --|.+|+|.+.+..+++..++
T Consensus 24 ~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 24 KAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp HHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 4567899999654 4432 1 128999999999988887654
No 217
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=34.26 E-value=1.3e+02 Score=21.64 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=20.7
Q ss_pred eCCEEEEEeCCHHHHHHHHHhcCCC
Q 030155 41 RRNFAFVQFETQEEATKALESTDRS 65 (182)
Q Consensus 41 ~~g~afV~f~~~~~a~~Ai~~l~g~ 65 (182)
-+||-||++....+...+|..+.|.
T Consensus 37 fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 37 LKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred CCcEEEEEEECcHHHHHHHhCCCCE
Confidence 4899999999888888888877764
No 218
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=34.23 E-value=96 Score=17.89 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=25.0
Q ss_pred CHHHHHHhhccCC-ceEEEEEe-----CCEEEEEeCCHHHHHHHH
Q 030155 21 RERDIKRHFEPYG-NVLHVRIR-----RNFAFVQFETQEEATKAL 59 (182)
Q Consensus 21 ~e~~L~~~F~~~G-~i~~~~i~-----~g~afV~f~~~~~a~~Ai 59 (182)
.-.+|..+|.+.| .|..+.+. .....+.+++.+.|.+++
T Consensus 11 ~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 11 RLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred hHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 3456677787776 67666551 345556777877777665
No 219
>PF06804 Lipoprotein_18: NlpB/DapX lipoprotein; InterPro: IPR010653 This entry consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be non-essential [].; PDB: 2YH6_A 3TGO_D 2YH5_A 2LAF_A 2LAE_A 3SNS_A.
Probab=34.01 E-value=70 Score=26.34 Aligned_cols=49 Identities=10% Similarity=0.250 Sum_probs=35.1
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCC-ceEEEEEeCCEEEEEeCCHHHH
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRIRRNFAFVQFETQEEA 55 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G-~i~~~~i~~g~afV~f~~~~~a 55 (182)
.+..++|-+. +++..|..|-.+|.+.| .|.+..-..|.-||.|...++.
T Consensus 197 ~g~~~l~~~~-~fd~aW~rl~~aL~~~gf~V~d~drs~G~~~v~y~~~~~~ 246 (303)
T PF06804_consen 197 NGQPALILRA-PFDRAWRRLGLALDRLGFTVEDRDRSQGVYYVRYKPPDSE 246 (303)
T ss_dssp TS-EEEEEES--HHHHHHHHHHHHHHTTEEEEEEETTTTEEEEEE----HH
T ss_pred CCceEEEECC-cHHHHHHHHHHHHHhCCCEEEecccccEEEEEEEcCCChh
Confidence 3455667777 78889999999999999 6777777899999999876544
No 220
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=33.34 E-value=1.2e+02 Score=25.97 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=30.4
Q ss_pred CCHHHHHHhhcc----CCceEEEEE-------eCCEEEEEeCCHHHHHHHHHhc
Q 030155 20 TRERDIKRHFEP----YGNVLHVRI-------RRNFAFVQFETQEEATKALEST 62 (182)
Q Consensus 20 ~~e~~L~~~F~~----~G~i~~~~i-------~~g~afV~f~~~~~a~~Ai~~l 62 (182)
...-+|..+|.. +|-|+++.| ...+.++.|.+.++|.+|+..+
T Consensus 144 ~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 144 VAGYDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred CCCCChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHH
Confidence 334467777753 677888877 1346678999999999988554
No 221
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.17 E-value=1.6e+02 Score=21.84 Aligned_cols=47 Identities=21% Similarity=0.307 Sum_probs=34.1
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccC---CceEEEEEe-----------------CC-EEEEEeCCHHH
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPY---GNVLHVRIR-----------------RN-FAFVQFETQEE 54 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~---G~i~~~~i~-----------------~g-~afV~f~~~~~ 54 (182)
..+||+..+ ...+++++..++..+- +++..|.|. +. |-+|.|++-..
T Consensus 87 ~~KI~~k~a-sqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 87 DGKIYSKKA-SQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CCeEEEEeh-hcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 368889899 7899999988888765 456666661 22 77788876543
No 222
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=33.07 E-value=75 Score=21.09 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=32.4
Q ss_pred HHHHHHhhccCC--ceEEEEEeCCEEEEEeC-CHHHHHHHHHhcCCCccCCcEE
Q 030155 22 ERDIKRHFEPYG--NVLHVRIRRNFAFVQFE-TQEEATKALESTDRSKLVDRVI 72 (182)
Q Consensus 22 e~~L~~~F~~~G--~i~~~~i~~g~afV~f~-~~~~a~~Ai~~l~g~~~~g~~l 72 (182)
-+.|+..+...| .|..+.+.+-|-|.-=. +.+.|...++.|....|.+-.|
T Consensus 19 G~ti~~aL~~lg~~~V~~vR~gK~~el~ld~~~~e~a~~~v~~mcekLLaNpVI 72 (83)
T COG1828 19 GETIEKALHRLGYNEVSDVRVGKVIELELDAESEEKAEEEVKEMCEKLLANPVI 72 (83)
T ss_pred hHHHHHHHHHcCCcccceeeeeeEEEEEecCcchhHHHHHHHHHHHHHhCCCce
Confidence 355666666555 68999887766654333 5667777777766655555433
No 223
>PF15063 TC1: Thyroid cancer protein 1
Probab=32.64 E-value=24 Score=22.98 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=20.0
Q ss_pred EEccCCCCCCCHHHHHHhhccCCce
Q 030155 11 FVINFDPIRTRERDIKRHFEPYGNV 35 (182)
Q Consensus 11 ~V~nL~p~~~~e~~L~~~F~~~G~i 35 (182)
-+.|| -.+++...|..+|++-|..
T Consensus 29 asaNI-Fe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 29 ASANI-FENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhh-hhccCHHHHHHHHHHccch
Confidence 35688 5789999999999999963
No 224
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=32.61 E-value=1.1e+02 Score=20.05 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=32.2
Q ss_pred EEEEccCCCCCCC--HHHHHHhhccCC--ceEEEEEeCCEEE-EEeCCHHHHHHHHHhcCCCccCC
Q 030155 9 TLFVINFDPIRTR--ERDIKRHFEPYG--NVLHVRIRRNFAF-VQFETQEEATKALESTDRSKLVD 69 (182)
Q Consensus 9 ~l~V~nL~p~~~~--e~~L~~~F~~~G--~i~~~~i~~g~af-V~f~~~~~a~~Ai~~l~g~~~~g 69 (182)
.|+|..- +.-.+ -+.++..+...| .|..|.+.+-|-| ++-.+.+.|.+-++.|....|.+
T Consensus 4 ~V~V~~K-~gvlDPqG~ai~~al~~lG~~~v~~Vr~GK~~~l~~~~~~~e~a~~~v~~i~~~LLaN 68 (80)
T PF02700_consen 4 RVEVTLK-PGVLDPQGEAIKRALHRLGYDGVKDVRVGKYIELELEADDEEEAEEQVEEICEKLLAN 68 (80)
T ss_dssp EEEEEE--TTS--HHHHHHHHHHHHTT-TTEEEEEEEEEEEEEEE-SSHHHHHHHHHHHHHHTTS-
T ss_pred EEEEEEC-CCCcCcHHHHHHHHHHHcCCcccCcEEEEEEEEEEEeCCCHHHHHHHHHHHHHHhcCC
Confidence 4666554 32222 234555555444 6899988766654 55566777777666555444433
No 225
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=32.60 E-value=51 Score=27.74 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=17.9
Q ss_pred CCEEEEEeCCHHHHHHHHHhcCCC
Q 030155 42 RNFAFVQFETQEEATKALESTDRS 65 (182)
Q Consensus 42 ~g~afV~f~~~~~a~~Ai~~l~g~ 65 (182)
-.|++|.|.|+++|.+..+. +++
T Consensus 212 ~~y~DiifgNe~EA~af~~~-~~~ 234 (343)
T KOG2854|consen 212 LPYADIIFGNEDEAAAFARA-HGW 234 (343)
T ss_pred cCcceEEEcCHHHHHHHHHh-hCC
Confidence 46899999999999887664 443
No 226
>PF14268 YoaP: YoaP-like
Probab=32.53 E-value=31 Score=19.97 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=24.8
Q ss_pred EEEEEeCCHHHHHHHHHhcCCCcc--CCcEEEEEEe
Q 030155 44 FAFVQFETQEEATKALESTDRSKL--VDRVISVEYA 77 (182)
Q Consensus 44 ~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~~a 77 (182)
+-+|.+++.+.|+.|-.-++...| +|..|.+++-
T Consensus 2 ~~~i~i~t~e~Aq~~P~pft~yalFYnGkfiT~eil 37 (44)
T PF14268_consen 2 FKLIKIDTLEKAQNAPCPFTTYALFYNGKFITNEIL 37 (44)
T ss_pred cEEEEeccHHHHhcCCCceeEEEEEECCEEEEeecc
Confidence 357888999999988766666443 7888877763
No 227
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=32.48 E-value=20 Score=33.81 Aligned_cols=30 Identities=47% Similarity=0.632 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 030155 152 YDRRRSPDYGRNRSPNFGRYRSRSPVRRSR 181 (182)
Q Consensus 152 ~~r~rs~~~~R~rs~~~~r~rsrsp~~r~r 181 (182)
++|-|+|-+.|++-++..|-+-++|.|+.|
T Consensus 333 r~RERspqr~rsr~rs~rRErer~prRr~R 362 (1194)
T KOG4246|consen 333 RDRERSPQRERSRQRSRRRERERIPRRRER 362 (1194)
T ss_pred hhhhcccccccccccccchhhhcchHhhhh
Confidence 344455555555555555556666666544
No 228
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=32.45 E-value=97 Score=20.16 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=34.7
Q ss_pred EEEccCCCCCCCHHHHHHhhcc-CC-ceEEEEE---eCC--EEEEEeCCHHHHHHHHHh
Q 030155 10 LFVINFDPIRTRERDIKRHFEP-YG-NVLHVRI---RRN--FAFVQFETQEEATKALES 61 (182)
Q Consensus 10 l~V~nL~p~~~~e~~L~~~F~~-~G-~i~~~~i---~~g--~afV~f~~~~~a~~Ai~~ 61 (182)
-|+-.+ ...++..+|++.+++ |+ .|..|.. +.+ -|||.+...+.|.+.-..
T Consensus 16 ~y~F~V-~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIV-DRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEE-CCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 445555 347899999988887 55 4555544 233 599999988888776544
No 229
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=32.28 E-value=1.5e+02 Score=19.39 Aligned_cols=59 Identities=17% Similarity=0.343 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHh-hccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030155 17 PIRTRERDIKRH-FEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 17 p~~~~e~~L~~~-F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
+-.+.-+||... -..||.-..+.....--.|-..+.++.++||+.|+. ....+-|+|-+
T Consensus 17 ~RPvkf~dl~~kv~~afGq~mdl~ytn~eL~iPl~~Q~DLDkAie~ld~-s~~~ksLRilL 76 (79)
T cd06405 17 PRPVKFKDLQQKVTTAFGQPMDLHYTNNELLIPLKNQEDLDRAIELLDR-SPHMKSLRILL 76 (79)
T ss_pred CCCccHHHHHHHHHHHhCCeeeEEEecccEEEeccCHHHHHHHHHHHcc-CccccceeEeE
Confidence 444666666544 457898888887777788889999999999998776 33334455543
No 230
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.25 E-value=1.2e+02 Score=22.52 Aligned_cols=46 Identities=13% Similarity=0.165 Sum_probs=35.1
Q ss_pred cCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhc
Q 030155 14 NFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALEST 62 (182)
Q Consensus 14 nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l 62 (182)
.| +..+.++-|.++.+..|.|.+.. .--..+.|.+.+.+.+||+.+
T Consensus 118 ~L-~epl~~eRlqDi~E~hgvIiE~~--E~D~V~i~Gd~drVk~aLke~ 163 (170)
T COG4010 118 HL-REPLAEERLQDIAETHGVIIEFE--EYDLVAIYGDSDRVKKALKEI 163 (170)
T ss_pred ec-CchhHHHHHHHHHHhhheeEEee--eccEEEEeccHHHHHHHHHHH
Confidence 35 66778888999999999887654 223456788999999999865
No 231
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=32.03 E-value=56 Score=24.61 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=30.4
Q ss_pred CCCEEEEccCCCC--CC-CHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHH
Q 030155 6 PTKTLFVINFDPI--RT-RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALE 60 (182)
Q Consensus 6 ~~~~l~V~nL~p~--~~-~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~ 60 (182)
.-..+||-+. +. +. ..+.|.+...+||.|..+.+.-.|.-+.+......+-+.+
T Consensus 20 ~~~~~FvvG~-~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~~ 76 (195)
T PF01762_consen 20 RVKVVFVVGE-SPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWASK 76 (195)
T ss_pred cEEEEEEEec-CCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHHh
Confidence 3456787777 33 22 2345788888999998887743333333333333333333
No 232
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=31.97 E-value=36 Score=20.79 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=26.8
Q ss_pred CceEEEEEeCCEEEEEeCC-HHHH---HHHHHhc-CCCccCCcEEEEEEeec
Q 030155 33 GNVLHVRIRRNFAFVQFET-QEEA---TKALEST-DRSKLVDRVISVEYALK 79 (182)
Q Consensus 33 G~i~~~~i~~g~afV~f~~-~~~a---~~Ai~~l-~g~~~~g~~l~V~~a~~ 79 (182)
|.|+.....+||+||+-.+ .++. ..++... ......|..|..++...
T Consensus 3 G~Vk~~~~~kGfGFI~~~~~g~diffh~~~~~~~~~~~~~~G~~V~f~~~~~ 54 (65)
T cd04458 3 GTVKWFDDEKGFGFITPDDGGEDVFVHISALEGDGFRSLEEGDRVEFELEEG 54 (65)
T ss_pred EEEEEEECCCCeEEEecCCCCcCEEEEhhHhhccCCCcCCCCCEEEEEEEEC
Confidence 5666665568999998776 3332 2233321 12234567777766654
No 233
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=31.49 E-value=40 Score=20.62 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=24.7
Q ss_pred CceEEEEEeCCEEEEEeCCHHH-HHHHHHhcCCC---c-cCCcEEEEEEee
Q 030155 33 GNVLHVRIRRNFAFVQFETQEE-ATKALESTDRS---K-LVDRVISVEYAL 78 (182)
Q Consensus 33 G~i~~~~i~~g~afV~f~~~~~-a~~Ai~~l~g~---~-~~g~~l~V~~a~ 78 (182)
|.|+.....+||+||+-.+... +--=+..|.+. . -.|..|...+..
T Consensus 3 G~V~~~~~~kgyGFI~~~~~~~diFfh~s~~~~~~~~~l~~G~~V~F~~~~ 53 (66)
T PF00313_consen 3 GTVKWFDDEKGYGFITSDDGGEDIFFHISDLSGNGFRSLKEGDRVEFEVEE 53 (66)
T ss_dssp EEEEEEETTTTEEEEEETTSSSEEEEEGGGBCSSSSTS--TTSEEEEEEEE
T ss_pred EEEEEEECCCCceEEEEcccceeEEeccccccccccccCCCCCEEEEEEEE
Confidence 5566665568999998876431 10001122222 2 256677766665
No 234
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=31.28 E-value=1.3e+02 Score=20.19 Aligned_cols=58 Identities=14% Similarity=0.038 Sum_probs=31.7
Q ss_pred CCHHHHHHhhccCCceEE----EEEeCCEEEEEeCCHHHHHHHHHhcCCCcc--CCcEEEEEEee
Q 030155 20 TRERDIKRHFEPYGNVLH----VRIRRNFAFVQFETQEEATKALESTDRSKL--VDRVISVEYAL 78 (182)
Q Consensus 20 ~~e~~L~~~F~~~G~i~~----~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~~a~ 78 (182)
..++.|...++..-.+.. ....+. .++-|-+..++..||+.++.+.. +|.+|.|-+..
T Consensus 18 YdK~wLl~~iq~~c~v~F~Pv~fh~~~~-~a~FfV~D~~tA~aLk~vsrkI~~~dg~Ki~I~V~p 81 (88)
T PF09162_consen 18 YDKDWLLNSIQSHCSVPFTPVDFHYEKN-RAQFFVEDASTASALKDVSRKICDEDGFKISIFVNP 81 (88)
T ss_dssp S-HHHHHHHHHHHSSS----EEEEEETT-EEEEEESSHHHHHHHHTTTTTEEBTTSBEE--EEEE
T ss_pred cCHHHHHHHHHHHCCCCeeeeeeeeeCC-EEEEEeCCHHHHHHHHHCCCceECCCCCEEEEEEcC
Confidence 456666666655433222 222344 45556666777778888877655 57777776554
No 235
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=30.83 E-value=1.3e+02 Score=18.27 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=33.3
Q ss_pred HHHHHHhhccCCceEEEEEeCC----EEEEEeCCHHHHHHHHHh
Q 030155 22 ERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALES 61 (182)
Q Consensus 22 e~~L~~~F~~~G~i~~~~i~~g----~afV~f~~~~~a~~Ai~~ 61 (182)
.+++.+.+...-+|..|....| .+.|.+.+.++.+..+..
T Consensus 12 ~~~~~~~l~~~p~V~~~~~vtG~~d~~~~v~~~d~~~l~~~i~~ 55 (74)
T PF01037_consen 12 YDEFAEALAEIPEVVECYSVTGEYDLILKVRARDMEELEEFIRE 55 (74)
T ss_dssp HHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEEeCCCCEEEEEEECCHHHHHHHHHH
Confidence 6788889999999999988655 678899999999998544
No 236
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=30.11 E-value=51 Score=22.26 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=29.4
Q ss_pred CCCHHHHHHhhccCCc-eEEEEE----eCCEEEEEeCCHHHHHHHHHhcC
Q 030155 19 RTRERDIKRHFEPYGN-VLHVRI----RRNFAFVQFETQEEATKALESTD 63 (182)
Q Consensus 19 ~~~e~~L~~~F~~~G~-i~~~~i----~~g~afV~f~~~~~a~~Ai~~l~ 63 (182)
.++...|..-|.--|. -+...+ =+.+|.|+|.+.+.+..|.+.|-
T Consensus 23 ~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 23 NLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred ccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 4566666655655552 112222 15689999999999999887664
No 237
>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=30.10 E-value=50 Score=29.17 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=41.0
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccC----CceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCc
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPY----GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 70 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~----G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 70 (182)
...+.|+|..|. ..--+.|+++|.+. |+++.|..+-.-..-.|.+....++|+..|--..+...
T Consensus 352 ~~~kaVlVtSL~--~~yye~lr~~Y~~~~t~tGe~V~V~QpShe~~Q~~~~~~h~~kAlaEmyLLS~sD~ 419 (476)
T PF03254_consen 352 QKSKAVLVTSLY--SEYYEKLRNMYWEHPTVTGEVVGVHQPSHEEYQQFGDNMHNQKALAEMYLLSLSDV 419 (476)
T ss_pred CceEEEEEEeCC--HHHHHHHHHHHhcCCCcCCcEEEEECCCCcccccccccchHHHHHHHHHHHHhccc
Confidence 456789999993 33457799998765 56666665555555556666666777766544333333
No 238
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=30.02 E-value=23 Score=29.35 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=31.7
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHH
Q 030155 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQE 53 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~ 53 (182)
.+++..|+|.+=+ ..--..++++|++||.+..+.....+.+..|...+
T Consensus 63 ~~~g~~i~v~g~~--~~g~~s~~k~l~~~~~~~~~~~a~~~~~~~~~~~~ 110 (300)
T COG2813 63 LPPGGEIVVVGEK--RDGVRSAEKMLEKYGGPTKTDSARHCMRLHYYSEN 110 (300)
T ss_pred CCCCCeEEEEecc--cchHHHHHHHHHHhcCccccchHhhcceeEeecCC
Confidence 3556777776652 34456788899999988887775555555554443
No 239
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=29.95 E-value=1.6e+02 Score=19.02 Aligned_cols=61 Identities=15% Similarity=0.231 Sum_probs=30.1
Q ss_pred EEEEccCCCCCCCH--HHHHHhhc--cCCceEEEEEeCCEEE-EEeCCHHHHHHHHHhcCCCccCCc
Q 030155 9 TLFVINFDPIRTRE--RDIKRHFE--PYGNVLHVRIRRNFAF-VQFETQEEATKALESTDRSKLVDR 70 (182)
Q Consensus 9 ~l~V~nL~p~~~~e--~~L~~~F~--~~G~i~~~~i~~g~af-V~f~~~~~a~~Ai~~l~g~~~~g~ 70 (182)
.|.|+.. |.-++. +.+...+. .|+.|..+.+.+.|-| ++-.+.++|...++.+....|.+.
T Consensus 4 ~I~V~~k-~gV~Dp~G~ti~~~l~~lg~~~v~~Vr~~k~~~l~~~~~~~~~a~~~v~~i~~~lL~Np 69 (80)
T TIGR00302 4 EVYIRLK-KGVLDPEGAAIQRALALLGYNEVKDVRTGKVIELTIEADSEEAVEREVEEMCEKLLANP 69 (80)
T ss_pred EEEEEEC-CCCcChHHHHHHHHHHHcCCCCcceEEEEEEEEEEEcCCChhhHHHHHHHHHHHhcCCc
Confidence 5777766 432222 33333333 4556778877666655 222344444444444444334443
No 240
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=29.64 E-value=1.4e+02 Score=22.68 Aligned_cols=53 Identities=15% Similarity=0.158 Sum_probs=35.3
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCc-eEEEEE------eCCEEEEEeCCHHHHHHHHHhc
Q 030155 9 TLFVINFDPIRTRERDIKRHFEPYGN-VLHVRI------RRNFAFVQFETQEEATKALEST 62 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~-i~~~~i------~~g~afV~f~~~~~a~~Ai~~l 62 (182)
.=||+|. +....-..|-+.|...|. |..|.= +.++-+|.|.+.++..+++..+
T Consensus 20 VR~ItN~-SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~ 79 (185)
T PF04127_consen 20 VRFITNR-SSGKMGAALAEEAARRGAEVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKEL 79 (185)
T ss_dssp SEEEEES---SHHHHHHHHHHHHTT-EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHH
T ss_pred ceEecCC-CcCHHHHHHHHHHHHCCCEEEEEecCccccccccceEEEecchhhhhhhhccc
Confidence 3477888 666667788888888884 333321 4578899999999998888754
No 241
>cd07052 BMC_like_1_repeat2 Bacterial Micro-Compartment (BMC)-like domain 1 repeat 2. BMC-like domains exist in cyanobacteria, proteobacteria, and actinobacteria and are homologs of the carboxysome shell proteins. They might be encoded from putative organelles involved in unknown metabolic process. Although it has been suggested that these carboxysome shell protein homologs form hexamers and further assemble into the flat facets of the polyhedral bacterial organelles shell at present no experimental evidence exists to directly support this view. Proteins in this CD contain two tandem BMC domains. This CD includes repeat 2 (the second BMC domain of BMC like 1 proteins).
Probab=29.58 E-value=1.6e+02 Score=19.34 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=17.4
Q ss_pred eEEEEEeCCEEEEEeC-CHHHHHHHHH
Q 030155 35 VLHVRIRRNFAFVQFE-TQEEATKALE 60 (182)
Q Consensus 35 i~~~~i~~g~afV~f~-~~~~a~~Ai~ 60 (182)
+.++.+.-|++|+.+. +..+++.|++
T Consensus 46 lv~v~~~Ggk~~~~ltGdva~V~~A~~ 72 (79)
T cd07052 46 LVDVRMVGAFGRLYLSGTEADVRAARD 72 (79)
T ss_pred EEEEEEeccEEEEEEeecHHHHHHHHH
Confidence 4566667889999887 4455555554
No 242
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=29.37 E-value=1.7e+02 Score=21.25 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=37.3
Q ss_pred HHHHhhccCCceEEEEEeC--------------------CEEEEEeCCH--HHHHHHHHhcCCCccCCcEEEEEE
Q 030155 24 DIKRHFEPYGNVLHVRIRR--------------------NFAFVQFETQ--EEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 24 ~L~~~F~~~G~i~~~~i~~--------------------g~afV~f~~~--~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
-..++|...|-|..+.+.. .-.+++|.+. +..+.++....|..+.+..|.|.-
T Consensus 60 r~L~~l~e~Glv~~~~~~~~~~~y~~~~~~~H~HliC~~CG~v~e~~~~~i~~~~~~~~~~~Gf~i~~~~l~~~G 134 (145)
T COG0735 60 RTLKLLEEAGLVHRLEFEGGKTRYELNSEPHHHHLICLDCGKVIEFEDDEIEALQEEIAKKLGFKLKDHTLEIYG 134 (145)
T ss_pred HHHHHHHHCCCEEEEEeCCCEEEEecCCCCcccEEEecCCCCEEEecchhHHHHHHHHHHhcCCeeeeeEEEEEE
Confidence 3456677788777776621 1145677776 677778888889999988888764
No 243
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=28.96 E-value=1.5e+02 Score=18.36 Aligned_cols=45 Identities=27% Similarity=0.347 Sum_probs=28.5
Q ss_pred CCHHHHHHhhccCC-ceEEEEE-e-C-----CEEEEEeCC---HHHHHHHHHhcCC
Q 030155 20 TRERDIKRHFEPYG-NVLHVRI-R-R-----NFAFVQFET---QEEATKALESTDR 64 (182)
Q Consensus 20 ~~e~~L~~~F~~~G-~i~~~~i-~-~-----g~afV~f~~---~~~a~~Ai~~l~g 64 (182)
-.-.++.++|+.+| .|..|.- + + -.-||+++. ....+.+++.|..
T Consensus 11 G~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 11 GALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred CHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 34577888999987 6666643 1 1 145677764 5566667766644
No 244
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=28.94 E-value=43 Score=26.73 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=29.4
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhc--cCCceEEEEEeCCEEEEEeCCHHHHHHHHH
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFE--PYGNVLHVRIRRNFAFVQFETQEEATKALE 60 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~--~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~ 60 (182)
...++|+|| |+.++..-|.+++. .||.+.-+ .+-..+.|+..+.
T Consensus 97 ~~~~vv~Nl-Py~is~~il~~ll~~~~~g~~~~~---------l~vq~e~a~rl~a 142 (262)
T PF00398_consen 97 QPLLVVGNL-PYNISSPILRKLLELYRFGRVRMV---------LMVQKEVAERLLA 142 (262)
T ss_dssp SEEEEEEEE-TGTGHHHHHHHHHHHGGGCEEEEE---------EEEEHHHHHHHHT
T ss_pred CceEEEEEe-cccchHHHHHHHhhcccccccceE---------EEEehhhhhhccC
Confidence 456889999 99999998888886 45533222 2223556666654
No 245
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.77 E-value=1.4e+02 Score=18.06 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=26.5
Q ss_pred EEccCCCCCCC-HHHHHHhhccCC-ceEEEEE-eCCEEEEEeCCHHHHHHHHHhcCCC
Q 030155 11 FVINFDPIRTR-ERDIKRHFEPYG-NVLHVRI-RRNFAFVQFETQEEATKALESTDRS 65 (182)
Q Consensus 11 ~V~nL~p~~~~-e~~L~~~F~~~G-~i~~~~i-~~g~afV~f~~~~~a~~Ai~~l~g~ 65 (182)
.||.+ ..... ...+...|.+.| +|.-+.. .....+..+-+.++++.|++.||..
T Consensus 6 vVG~~-~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v~~~~~~~av~~Lh~~ 62 (65)
T cd04918 6 LIGNV-QRSSLILERAFHVLYTKGVNVQMISQGASKVNISLIVNDSEAEGCVQALHKS 62 (65)
T ss_pred EECCC-CCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHH
Confidence 46776 33221 223444445555 3333332 2223333334567888888887754
No 246
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=28.71 E-value=82 Score=22.02 Aligned_cols=15 Identities=7% Similarity=-0.040 Sum_probs=7.2
Q ss_pred CCCCCHHHHHHhhcc
Q 030155 17 PIRTRERDIKRHFEP 31 (182)
Q Consensus 17 p~~~~e~~L~~~F~~ 31 (182)
|.+++-.++..++.+
T Consensus 48 p~~~tv~~f~~~irk 62 (112)
T cd01611 48 PSDLTVGQFVYIIRK 62 (112)
T ss_pred cCCCCHHHHHHHHHH
Confidence 444555555444443
No 247
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.64 E-value=1.3e+02 Score=17.60 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=25.0
Q ss_pred CHHHHHHhhccCC-ceEEEEE--e--CCEEEE--EeCCHHHHHHHHHhcCCC
Q 030155 21 RERDIKRHFEPYG-NVLHVRI--R--RNFAFV--QFETQEEATKALESTDRS 65 (182)
Q Consensus 21 ~e~~L~~~F~~~G-~i~~~~i--~--~g~afV--~f~~~~~a~~Ai~~l~g~ 65 (182)
.-.+|..+|.++| .|..+.. . .+.+.| ..++.+.+.++++. +|.
T Consensus 12 ~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~~-~G~ 62 (65)
T cd04882 12 GLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQE-RGV 62 (65)
T ss_pred HHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHHH-CCc
Confidence 3456778888876 5655543 1 244444 45566666666654 444
No 248
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=28.37 E-value=2e+02 Score=26.04 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=31.1
Q ss_pred CHHHHHHhhc----cCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcC
Q 030155 21 RERDIKRHFE----PYGNVLHVRIR-------RNFAFVQFETQEEATKALESTD 63 (182)
Q Consensus 21 ~e~~L~~~F~----~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~ 63 (182)
+.-+|..+|. .+|-|+++.|. ...+++.|.+.++|.+|+..+.
T Consensus 279 ~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 279 AGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred CCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHH
Confidence 3457777762 46788888772 3467889999999988876643
No 249
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=28.23 E-value=56 Score=24.30 Aligned_cols=38 Identities=24% Similarity=0.450 Sum_probs=25.9
Q ss_pred HHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhc
Q 030155 22 ERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALEST 62 (182)
Q Consensus 22 e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l 62 (182)
-++|+.+|..|-.+.. .+-.-|..|.+.+.|.++|+..
T Consensus 116 l~~I~~fF~~YK~le~---~k~~~~~g~~~~~~A~~~I~~~ 153 (155)
T cd00412 116 LDEIKHFFEHYKDLEG---KKEVKVAGWKDKEEALKIIKES 153 (155)
T ss_pred HHHHHHHHHHhcccCC---CCceEECcCcCHHHHHHHHHHH
Confidence 4678899998864432 1234455788888888888753
No 250
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=28.21 E-value=1.5e+02 Score=22.40 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHhcCCCccCCcEEEEE
Q 030155 50 ETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 50 ~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
.+.++.++|++.++.....|+.+.|.
T Consensus 90 Ps~~~i~~aVeFi~k~asLGktvYVH 115 (183)
T KOG1719|consen 90 PSLENIQKAVEFIHKNASLGKTVYVH 115 (183)
T ss_pred CCHHHHHHHHHHHHhccccCCeEEEE
Confidence 57888999999989888889877774
No 251
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=28.17 E-value=75 Score=29.18 Aligned_cols=59 Identities=19% Similarity=0.344 Sum_probs=38.3
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--CCEEEEEeC-----CHHHHHHHHHhcC
Q 030155 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFE-----TQEEATKALESTD 63 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--~g~afV~f~-----~~~~a~~Ai~~l~ 63 (182)
-|.+.|...+++|.--+.-.+..-+...|.++.+.|. -..+|+.|. ..+.++.||+.|.
T Consensus 787 LPp~~i~ac~mDP~LDD~vmfA~kLr~lG~~v~l~vle~lPHGFLnft~ls~E~~~~~~~CI~rl~ 852 (880)
T KOG4388|consen 787 LPPVHIVACAMDPMLDDSVMFARKLRNLGQPVTLRVLEDLPHGFLNFTALSRETRQAAELCIERLR 852 (880)
T ss_pred CCCceEEEeccCcchhHHHHHHHHHHhcCCceeehhhhcCCccceeHHhhCHHHHHHHHHHHHHHH
Confidence 3566777788876422223445556678988888773 346777776 4567777887654
No 252
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.00 E-value=1.9e+02 Score=19.25 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=26.3
Q ss_pred CHHHHHHhhccCC-ceEEEEE-e---C--C-EEEEEeCC--HHHHHHHHHhcCC
Q 030155 21 RERDIKRHFEPYG-NVLHVRI-R---R--N-FAFVQFET--QEEATKALESTDR 64 (182)
Q Consensus 21 ~e~~L~~~F~~~G-~i~~~~i-~---~--g-~afV~f~~--~~~a~~Ai~~l~g 64 (182)
.-.++..+|+.+| .++.|.- + . . +-||+|+- .+..++||+.|..
T Consensus 27 sL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~ 80 (90)
T cd04931 27 ALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRN 80 (90)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHH
Confidence 4567888898887 5566543 1 1 1 34677763 3455567766543
No 253
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=27.91 E-value=1.6e+02 Score=20.08 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=32.2
Q ss_pred CCHHHHHHhhccCCceEEEEE-eCC----EEEEEeCCHHHHHHHHHhcCC
Q 030155 20 TRERDIKRHFEPYGNVLHVRI-RRN----FAFVQFETQEEATKALESTDR 64 (182)
Q Consensus 20 ~~e~~L~~~F~~~G~i~~~~i-~~g----~afV~f~~~~~a~~Ai~~l~g 64 (182)
-.+++|..+...-|.|.+|.+ ... -+.+...+..+++..++.|+.
T Consensus 9 ~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 9 EIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 356778888776678899888 333 356778899999999887754
No 254
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=27.87 E-value=68 Score=28.54 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=31.3
Q ss_pred CCHHHHHHhhccCCceEEE---EEeCCEEEEEeCCHHHHHHHHHhcCCC
Q 030155 20 TRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRS 65 (182)
Q Consensus 20 ~~e~~L~~~F~~~G~i~~~---~i~~g~afV~f~~~~~a~~Ai~~l~g~ 65 (182)
+.+++|.+-|.-+-.-.++ .+..+++=+.|.++++|++..+.++..
T Consensus 90 iWdqELY~nf~y~q~r~ffhtFegddc~aGLnF~~E~EA~~F~k~V~~r 138 (569)
T KOG3671|consen 90 IWDQELYQNFEYRQPRTFFHTFEGDDCQAGLNFASEEEAQKFRKKVQDR 138 (569)
T ss_pred eehHHhhhhceeccCccceeeeccccceeeecccCHHHHHHHHHHHHHH
Confidence 4567788777755432222 224667778999999999988776543
No 255
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=27.86 E-value=34 Score=21.06 Aligned_cols=36 Identities=8% Similarity=0.229 Sum_probs=25.6
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCC
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN 43 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g 43 (182)
.+.+++|.++ + ....++|..+..++|....-.+...
T Consensus 7 ~g~~f~i~~~-~-~~~~~~l~~~i~~~GG~v~~~~~~~ 42 (78)
T PF00533_consen 7 EGCTFCISGF-D-SDEREELEQLIKKHGGTVSNSFSKK 42 (78)
T ss_dssp TTEEEEESST-S-SSHHHHHHHHHHHTTEEEESSSSTT
T ss_pred CCEEEEEccC-C-CCCHHHHHHHHHHcCCEEEeecccC
Confidence 5678889777 3 5788999999999996554333333
No 256
>smart00457 MACPF membrane-attack complex / perforin.
Probab=27.85 E-value=1.1e+02 Score=23.20 Aligned_cols=27 Identities=15% Similarity=0.377 Sum_probs=21.2
Q ss_pred ccCCCCCCCHHHHHHhhccCCc--eEEEEE
Q 030155 13 INFDPIRTRERDIKRHFEPYGN--VLHVRI 40 (182)
Q Consensus 13 ~nL~p~~~~e~~L~~~F~~~G~--i~~~~i 40 (182)
.+| |...+..++..||..||. |..+.+
T Consensus 31 ~~L-p~~~~~~~~~~fi~~yGTH~i~s~~~ 59 (194)
T smart00457 31 RDL-PDQYNRGAYARFIDKYGTHYITSATL 59 (194)
T ss_pred HhC-ccccCHHHHHHHHHHhCCeEEEeeee
Confidence 367 777788889999999994 666666
No 257
>PF09250 Prim-Pol: Bifunctional DNA primase/polymerase, N-terminal; InterPro: IPR015330 Members of this family adopt a structure consisting of a core of antiparallel beta sheets. They are found in various bacterial hypothetical proteins, and have been shown to harbour both primase and polymerase activities []. ; PDB: 1RO0_A 1RNI_A 1RO2_A 3M1M_A.
Probab=27.81 E-value=92 Score=22.44 Aligned_cols=34 Identities=15% Similarity=0.442 Sum_probs=22.3
Q ss_pred CCHHHHHHhhccC-CceEEEEE-eCCEEEEEeCCHH
Q 030155 20 TRERDIKRHFEPY-GNVLHVRI-RRNFAFVQFETQE 53 (182)
Q Consensus 20 ~~e~~L~~~F~~~-G~i~~~~i-~~g~afV~f~~~~ 53 (182)
++.++|..+|..+ +.-.-|.+ ..++..|.++..+
T Consensus 32 ~~~~~i~~~~~~~~~~~igl~~~~~gl~viDiD~~~ 67 (163)
T PF09250_consen 32 TDPEQIERWWRRYPGANIGLVLGPSGLVVIDIDNKD 67 (163)
T ss_dssp THHHHHHHHHH--TT-EEEEESSGGGEEEEEES-HH
T ss_pred CCHHHHHHHHhhCCCceEEEEecCCceEEEECCCcc
Confidence 4678899999876 33334444 4789999999887
No 258
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=27.58 E-value=1.2e+02 Score=24.94 Aligned_cols=30 Identities=27% Similarity=0.590 Sum_probs=21.1
Q ss_pred CCCCCEEEEcc--CCCCCCCHHHHHHhhccCC
Q 030155 4 QRPTKTLFVIN--FDPIRTRERDIKRHFEPYG 33 (182)
Q Consensus 4 ~~~~~~l~V~n--L~p~~~~e~~L~~~F~~~G 33 (182)
++.+++|.+.. +||..-.|..++-+|++||
T Consensus 98 dp~~~KiLLTePPmNP~kNREKm~evMFEkY~ 129 (389)
T KOG0677|consen 98 DPTNCKILLTEPPMNPTKNREKMIEVMFEKYG 129 (389)
T ss_pred CCccCeEEeeCCCCCccccHHHHHHHHHHHcC
Confidence 45567788875 4454455778899999986
No 259
>COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]
Probab=27.24 E-value=2.1e+02 Score=21.46 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=19.3
Q ss_pred CCEEEEEeCCHHHHHHHHHhcCC
Q 030155 42 RNFAFVQFETQEEATKALESTDR 64 (182)
Q Consensus 42 ~g~afV~f~~~~~a~~Ai~~l~g 64 (182)
....|+.|+++++|..+++....
T Consensus 76 ~~~v~ll~~~p~d~~~lve~gv~ 98 (159)
T COG3444 76 GQKVFLLFENPQDVLRLVEGGVP 98 (159)
T ss_pred CeEEEEEECCHHHHHHHHhcCCC
Confidence 45799999999999999986554
No 260
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=27.22 E-value=1.6e+02 Score=25.07 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=30.5
Q ss_pred CCHHHHHHhhccCC-ceE----EEEE------eCCEEEEEeCCHHHHHHHHHhcC
Q 030155 20 TRERDIKRHFEPYG-NVL----HVRI------RRNFAFVQFETQEEATKALESTD 63 (182)
Q Consensus 20 ~~e~~L~~~F~~~G-~i~----~~~i------~~g~afV~f~~~~~a~~Ai~~l~ 63 (182)
.+..+++++|..-- .|. .+.| +.-+-||+..+.+++..||+.|.
T Consensus 3 ~~~~~~~~~~~~~~~~i~~~~~~l~~lDq~~lP~~~~~~~~~~~~~v~~aI~~M~ 57 (363)
T PRK05772 3 LTVKEVKELFKPKLLPIIWKDNTLTLLDQSLLPFETVYVDLKTVEEVALAIRNMQ 57 (363)
T ss_pred chHHHHHHHhCCCCceEEecCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCc
Confidence 46678888887531 111 1111 45689999999999999998764
No 261
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.03 E-value=1.9e+02 Score=19.09 Aligned_cols=29 Identities=38% Similarity=0.436 Sum_probs=21.3
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEE
Q 030155 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVR 39 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~ 39 (182)
+.|+||+. +..+..+++++.++|--..+.
T Consensus 1 ~vliVGG~---~~~~~~~~~~~~~~G~~~~~h 29 (97)
T PF10087_consen 1 SVLIVGGR---EDRERRYKRILEKYGGKLIHH 29 (97)
T ss_pred CEEEEcCC---cccHHHHHHHHHHcCCEEEEE
Confidence 36889998 246888999999998543333
No 262
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=26.93 E-value=71 Score=22.11 Aligned_cols=24 Identities=8% Similarity=0.364 Sum_probs=17.1
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhcc
Q 030155 4 QRPTKTLFVINFDPIRTRERDIKRHFEP 31 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~ 31 (182)
...++.++++.| | +.+|+++|+..
T Consensus 61 ekeg~~i~~g~l-P---t~~eVe~Fl~~ 84 (105)
T PF09702_consen 61 EKEGNYIIVGYL-P---TDEEVEDFLDD 84 (105)
T ss_pred cCCCCEEecCCC-C---ChHHHHHHHHH
Confidence 345678999999 6 46777777654
No 263
>PRK15464 cold shock-like protein CspH; Provisional
Probab=26.83 E-value=48 Score=21.08 Aligned_cols=48 Identities=10% Similarity=-0.004 Sum_probs=28.6
Q ss_pred CCceEEEEEeCCEEEEEeCCH-HHH---HHHHHhcCCC--ccCCcEEEEEEeecC
Q 030155 32 YGNVLHVRIRRNFAFVQFETQ-EEA---TKALESTDRS--KLVDRVISVEYALKD 80 (182)
Q Consensus 32 ~G~i~~~~i~~g~afV~f~~~-~~a---~~Ai~~l~g~--~~~g~~l~V~~a~~~ 80 (182)
.|.|+...-.+||+||+=.+- +++ ..||+. ++. ...|..|..++....
T Consensus 6 ~G~Vk~fn~~KGfGFI~~~~g~~DvFvH~s~l~~-~g~~~l~~G~~V~f~v~~~~ 59 (70)
T PRK15464 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTP-RDAEVLIPGLRVEFCRVNGL 59 (70)
T ss_pred eEEEEEEECCCCeEEEccCCCCccEEEEehhehh-cCCCCCCCCCEEEEEEEECC
Confidence 366776666799999976652 222 233432 232 346777777777644
No 264
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=26.64 E-value=1.2e+02 Score=20.24 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=22.3
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccC---CceEEEEE---eCCEEEEEeC
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPY---GNVLHVRI---RRNFAFVQFE 50 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~---G~i~~~~i---~~g~afV~f~ 50 (182)
...-|||||+ ...+-+ .|.+...++ |.+.-+.- ..||+|-++.
T Consensus 24 i~~GVyVg~~-s~rVRe-~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNV-SARVRE-RLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCC-CHHHHH-HHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 4556999999 444544 444444333 22222211 3577776663
No 265
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=26.55 E-value=16 Score=34.00 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=18.1
Q ss_pred eCCEEEEEeCCHHHHHHHHHh
Q 030155 41 RRNFAFVQFETQEEATKALES 61 (182)
Q Consensus 41 ~~g~afV~f~~~~~a~~Ai~~ 61 (182)
..|||||+|+.+..+..|++.
T Consensus 380 ~SgfC~vTFteHts~Vt~v~f 400 (893)
T KOG0291|consen 380 QSGFCFVTFTEHTSGVTAVQF 400 (893)
T ss_pred cCceEEEEeccCCCceEEEEE
Confidence 479999999999998888763
No 266
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=26.50 E-value=55 Score=21.02 Aligned_cols=48 Identities=15% Similarity=0.215 Sum_probs=26.9
Q ss_pred CceEEEEEeCCEEEEEeCCH-HHHH---HHHHhcCC--CccCCcEEEEEEeecCC
Q 030155 33 GNVLHVRIRRNFAFVQFETQ-EEAT---KALESTDR--SKLVDRVISVEYALKDD 81 (182)
Q Consensus 33 G~i~~~~i~~g~afV~f~~~-~~a~---~Ai~~l~g--~~~~g~~l~V~~a~~~~ 81 (182)
|.|+.....+||+||+=.+- +++- .+|.. .+ ....|..|..++.....
T Consensus 4 G~Vkwfn~~KGfGFI~~~~gg~dVFvH~s~i~~-~g~~~l~~G~~V~f~~~~~~~ 57 (74)
T PRK09937 4 GTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQM-DGYRTLKAGQSVQFDVHQGPK 57 (74)
T ss_pred eEEEEEeCCCCeEEEeeCCCCccEEEEEeeccc-cCCCCCCCCCEEEEEEEECCC
Confidence 66666666799999966542 2211 22321 22 23367777777766543
No 267
>PLN02373 soluble inorganic pyrophosphatase
Probab=26.43 E-value=69 Score=24.67 Aligned_cols=37 Identities=27% Similarity=0.410 Sum_probs=26.4
Q ss_pred HHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhc
Q 030155 22 ERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALEST 62 (182)
Q Consensus 22 e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l 62 (182)
-++|+.+|..|-.+. .+.+.+..|.+.+.|.++|+..
T Consensus 138 l~~I~~fF~~YK~le----gK~v~v~g~~~~~~A~~~I~~~ 174 (188)
T PLN02373 138 LAEIRRFFEDYKKNE----NKEVAVNDFLPAEAAIEAIQYS 174 (188)
T ss_pred HHHHHHHHHHhcccC----CCeEEeCCccCHHHHHHHHHHH
Confidence 467888999886433 2345567888899988888654
No 268
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=26.32 E-value=82 Score=29.73 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=24.5
Q ss_pred CEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030155 43 NFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 43 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
+.|||+|++...|+.|.+..-+..+.+.. +|+.|.
T Consensus 358 ~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~-~v~iap 392 (827)
T COG5594 358 KSGFITFKSQASAQIAAQSQIYSRVLGKL-KVEIAP 392 (827)
T ss_pred ccEEEEEehhHHHHHHHHhhhhhhhhcce-eeeecC
Confidence 48999999999999998865444444332 455543
No 269
>PRK10162 acetyl esterase; Provisional
Probab=26.26 E-value=1.7e+02 Score=23.94 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=34.7
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--CCEEEEEeC-CHHHHHHHHHh
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFE-TQEEATKALES 61 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--~g~afV~f~-~~~~a~~Ai~~ 61 (182)
+...|+++..++..-.-..+.+.+.+.|.-.++.+- -..+|+.|. ..++|+.|+..
T Consensus 249 Pp~~i~~g~~D~L~de~~~~~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~ 307 (318)
T PRK10162 249 PPCFIAGAEFDPLLDDSRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRD 307 (318)
T ss_pred CCeEEEecCCCcCcChHHHHHHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHH
Confidence 445566677766533446678888888855555442 346777775 34666666654
No 270
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=26.04 E-value=1.2e+02 Score=21.60 Aligned_cols=29 Identities=45% Similarity=0.497 Sum_probs=20.2
Q ss_pred CCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCC
Q 030155 20 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 64 (182)
Q Consensus 20 ~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g 64 (182)
++++||+-+.++.|. +.++|.+||+..+|
T Consensus 83 i~eeDIkLV~eQa~V----------------sreeA~kAL~e~~G 111 (122)
T COG1308 83 ISEEDIKLVMEQAGV----------------SREEAIKALEEAGG 111 (122)
T ss_pred CCHHHHHHHHHHhCC----------------CHHHHHHHHHHcCC
Confidence 556666666666552 67899999988665
No 271
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=26.01 E-value=46 Score=28.23 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=38.3
Q ss_pred EEEEccCCCC--CCCHH----HHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcC
Q 030155 9 TLFVINFDPI--RTRER----DIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 63 (182)
Q Consensus 9 ~l~V~nL~p~--~~~e~----~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~ 63 (182)
..++|||+|. ..+++ +.+.++..++......++.||++.-....+.++..++..+
T Consensus 286 ~~lqGNldP~lL~~~~~~i~~~~~~iL~~~~~~~~~IfnlGhGI~P~tp~e~v~~lve~v~ 346 (352)
T COG0407 286 VALQGNLDPALLYAPPEAIKEEVKRILEDGGDGSGYIFNLGHGILPETPPENVKALVEAVH 346 (352)
T ss_pred ceEEeccChHhhcCCHHHHHHHHHHHHHHhccCCCceecCCCCcCCCCCHHHHHHHHHHHH
Confidence 5788999872 22334 4456777777765555678999988888888887776554
No 272
>PF09078 CheY-binding: CheY binding; InterPro: IPR015162 The CheY binding domain is found in the response regulator histidine kinase CheA. It adopts a secondary structure consisting of an open-face beta/alpha sandwich, with four antiparallel beta-strands and two alpha-helices. It binds to a corresponding domain on CheY, with subsequent phosphorylation of the CheY Asp57 residue, and activation of CheY, which then affects flagellar rotation []. ; PDB: 1FWP_A 1EAY_C 1A0O_D 1FFG_B 1FFS_B 1FFW_D.
Probab=25.88 E-value=1.8e+02 Score=18.35 Aligned_cols=63 Identities=13% Similarity=0.032 Sum_probs=33.2
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030155 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
+|-+.+| + .-..+-|.+.+...|.|.......+---|...+...++..+..|. ..+...+|.+
T Consensus 2 rI~L~~l-~-~kd~~lL~eELgnLG~v~~~~~~~~~l~~~L~T~~s~DDI~AV~C-FVid~dQI~i 64 (65)
T PF09078_consen 2 RITLSGL-K-EKDVDLLLEELGNLGTVSDQEKGGDSLEVWLETSVSADDIIAVCC-FVIDPDQISI 64 (65)
T ss_dssp EEEEES----TTHHHHHHHHHHHHS--EEEEEESSEEEEEE-STSSHHHHHHHHT-TTS-GGGEEE
T ss_pred eEEecCC-C-HHHHHHHHHHHhcCccEEEEecCCCeEEEEECCCCChhhEEEEEE-EEEcHHHeEE
Confidence 3556667 3 234566788899999999888766655556655555544433222 3344444443
No 273
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=25.85 E-value=1.8e+02 Score=23.56 Aligned_cols=70 Identities=21% Similarity=0.324 Sum_probs=36.8
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCC--ceEEEEE-----------------eCCEEEEEeCCHHHHH--HHHHhc--
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYG--NVLHVRI-----------------RRNFAFVQFETQEEAT--KALEST-- 62 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G--~i~~~~i-----------------~~g~afV~f~~~~~a~--~Ai~~l-- 62 (182)
+++++|+ +| +..++++-|+-+...+| .|..... ...||.|.|+...+.+ .+|..|
T Consensus 157 ~nr~aY~-~l-S~Rad~~lLe~fc~~~gy~~vvf~qT~de~g~PiYHTNVmMaige~favic~~~i~~~~R~~vir~L~~ 234 (318)
T COG4874 157 PNRTAYA-GL-SQRADRELLEVFCEQIGYSRVVFFQTRDESGSPIYHTNVMMAIGEHFAVICDEAIPEYERRFVIRSLAK 234 (318)
T ss_pred cchhhhh-hh-hcccCHHHHHHHHHHcCCceeeeeeeccccCCcceehhHHHHhhhheeeeeccccccHHHHHHHHHHHh
Confidence 4556666 34 34566655555555555 4444422 1458888777544332 233333
Q ss_pred CCCc-----------cCCcEEEEEEe
Q 030155 63 DRSK-----------LVDRVISVEYA 77 (182)
Q Consensus 63 ~g~~-----------~~g~~l~V~~a 77 (182)
+|++ |+|..|.++-+
T Consensus 235 dgkeiv~is~~Q~~hF~GN~ieL~~~ 260 (318)
T COG4874 235 DGKEIVSISIEQMNHFCGNIIELETA 260 (318)
T ss_pred CCCeEEEeeHHHHHHhhccceEeecc
Confidence 3433 36777766654
No 274
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.78 E-value=3.9e+02 Score=24.37 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=36.7
Q ss_pred HHHHHhhccCCceEEEEEeC-CEEEEEeCCHHHHHHHHHhcC--CC-----cc-CCcEEEEEEeecCCCC
Q 030155 23 RDIKRHFEPYGNVLHVRIRR-NFAFVQFETQEEATKALESTD--RS-----KL-VDRVISVEYALKDDSE 83 (182)
Q Consensus 23 ~~L~~~F~~~G~i~~~~i~~-g~afV~f~~~~~a~~Ai~~l~--g~-----~~-~g~~l~V~~a~~~~~~ 83 (182)
++|.+.|..-+.|..|.+.. ||-++.+....-++..+..+. +. .+ .|.+|.|++..+...+
T Consensus 61 ~~i~~~l~~~~~~~~veiaGpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptk 130 (577)
T COG0018 61 EEIAEKLDTDEIIEKVEIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTG 130 (577)
T ss_pred HHHHHhccccCcEeEEEEcCCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCCC
Confidence 45666666655677888754 777666665444444433333 22 12 5789999998766543
No 275
>PHA03008 hypothetical protein; Provisional
Probab=25.74 E-value=1.2e+02 Score=23.75 Aligned_cols=44 Identities=14% Similarity=0.164 Sum_probs=31.8
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCC
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFET 51 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~ 51 (182)
+..+||.|+ ..--+..-++.+|.+|..+.++.+..|--=|.|.+
T Consensus 21 ~d~~~~sni-t~~h~~n~i~~ff~~~d~~~~~ifvpg~~dilfd~ 64 (234)
T PHA03008 21 CDIAFISNI-THIHDHNIIKIFFDKFDDFDEIIFVPGDIDILFDD 64 (234)
T ss_pred ccEEEEecc-cccccccHHHHHHhhccccceEEEccCCcceEecC
Confidence 456889999 44566778899999999998887765544444443
No 276
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=25.71 E-value=54 Score=20.66 Aligned_cols=48 Identities=17% Similarity=0.233 Sum_probs=26.9
Q ss_pred CCceEEEEEeCCEEEEEeCCHH-HH---HHHHHhcCC-C-ccCCcEEEEEEeecC
Q 030155 32 YGNVLHVRIRRNFAFVQFETQE-EA---TKALESTDR-S-KLVDRVISVEYALKD 80 (182)
Q Consensus 32 ~G~i~~~~i~~g~afV~f~~~~-~a---~~Ai~~l~g-~-~~~g~~l~V~~a~~~ 80 (182)
.|.|+...-.+||+||+=.+-. ++ ..+|.. .+ . ...|..|..++....
T Consensus 5 ~G~Vk~f~~~kGyGFI~~~~g~~dvfvH~s~l~~-~g~~~l~~G~~V~f~~~~~~ 58 (69)
T PRK09507 5 KGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQT-NGFKTLAEGQRVEFEITNGA 58 (69)
T ss_pred ceEEEEEeCCCCcEEEecCCCCeeEEEEeecccc-cCCCCCCCCCEEEEEEEECC
Confidence 3666666667999999765532 21 123322 22 2 235667777666544
No 277
>PRK14998 cold shock-like protein CspD; Provisional
Probab=25.69 E-value=59 Score=20.80 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=27.9
Q ss_pred CCceEEEEEeCCEEEEEeCCH-HHHH---HHHHhcCC--CccCCcEEEEEEeecCC
Q 030155 32 YGNVLHVRIRRNFAFVQFETQ-EEAT---KALESTDR--SKLVDRVISVEYALKDD 81 (182)
Q Consensus 32 ~G~i~~~~i~~g~afV~f~~~-~~a~---~Ai~~l~g--~~~~g~~l~V~~a~~~~ 81 (182)
.|.|+.....+||+||+=.+- +++- .+|+. ++ ....|..|..++.....
T Consensus 3 ~G~Vkwfn~~kGfGFI~~~~g~~dVFvH~s~l~~-~g~~~l~~G~~V~f~~~~~~~ 57 (73)
T PRK14998 3 TGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQM-DGYRTLKAGQSVRFDVHQGPK 57 (73)
T ss_pred CeEEEEEeCCCceEEEecCCCCccEEEEeeeecc-cCCCCCCCCCEEEEEEEECCC
Confidence 367777766799999976542 2221 23322 22 23357777777766543
No 278
>PF13037 DUF3898: Domain of unknown function (DUF3898)
Probab=25.29 E-value=91 Score=20.90 Aligned_cols=42 Identities=19% Similarity=0.514 Sum_probs=29.3
Q ss_pred HHHHHHhhccCCceEEE-EE---------------eCCEEEEEeCCHHHHHHHHHhcC
Q 030155 22 ERDIKRHFEPYGNVLHV-RI---------------RRNFAFVQFETQEEATKALESTD 63 (182)
Q Consensus 22 e~~L~~~F~~~G~i~~~-~i---------------~~g~afV~f~~~~~a~~Ai~~l~ 63 (182)
.-+++.+++-||.-..+ ++ -+|+.=|+|-.+++.+..++.+.
T Consensus 33 ~~~Vk~lLaDfG~~iHiAKv~~RYv~liEgd~~~FEKG~SPVEflkP~~l~~V~eri~ 90 (91)
T PF13037_consen 33 HTTVKGLLADFGETIHIAKVNDRYVLLIEGDSLQFEKGFSPVEFLKPEDLQEVIERIK 90 (91)
T ss_pred ceehhHHHHhhccceeEEEECCEEEEEEEcceEEEccCCCceeeeCchhHHHHHHHhc
Confidence 34577778888853322 22 37888899999999998887653
No 279
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.23 E-value=44 Score=28.55 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=23.8
Q ss_pred ceEEEEEe-CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030155 34 NVLHVRIR-RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 34 ~i~~~~i~-~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
.|..|.++ -|--+..|++.-.|...|..-+|..|..+.|.|.-+
T Consensus 168 ~i~NIVfMGMGEPL~NydnV~~ai~il~d~~g~~is~R~ITVST~ 212 (371)
T PRK14461 168 RVTNLVFMGMGEPFANYDRWWQAVERLHDPQGFNLGARSMTVSTV 212 (371)
T ss_pred ceeeEEEEccCCchhhHHHHHHHHHHhcCccccCcCCCceEEEee
Confidence 46666653 455555555444444444333555666677666543
No 280
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=25.22 E-value=1.2e+02 Score=29.18 Aligned_cols=28 Identities=11% Similarity=0.266 Sum_probs=23.8
Q ss_pred eCCEEEEEeCCHHHHHHHHHhcCCCccC
Q 030155 41 RRNFAFVQFETQEEATKALESTDRSKLV 68 (182)
Q Consensus 41 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 68 (182)
.+||-|||-.....+..||+.|-+.-+.
T Consensus 209 lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 209 LKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred cceeEEEEechhHHHHHHHhhhhhheec
Confidence 4899999999999999999988775544
No 281
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=24.85 E-value=88 Score=24.73 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=20.0
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCC
Q 030155 9 TLFVINFDPIRTRERDIKRHFEPYG 33 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G 33 (182)
.++|+|| |+.++...|.+++..+|
T Consensus 96 ~~vvsNl-Py~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 96 LKVVSNL-PYNISSPLIFKLLEKPK 119 (253)
T ss_pred ceEEEcC-ChhhHHHHHHHHhccCC
Confidence 3789999 89999999999997554
No 282
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=24.81 E-value=2e+02 Score=19.97 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=11.1
Q ss_pred EEEEccCCCCCCCHHHHH
Q 030155 9 TLFVINFDPIRTRERDIK 26 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~ 26 (182)
.||||++ |...+.+.|+
T Consensus 7 ~l~~G~~-~~~~~~~~l~ 23 (138)
T smart00195 7 HLYLGSY-SSALNLALLK 23 (138)
T ss_pred CeEECCh-hHcCCHHHHH
Confidence 5999999 6544444443
No 283
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=24.80 E-value=1.5e+02 Score=19.59 Aligned_cols=15 Identities=0% Similarity=-0.022 Sum_probs=7.0
Q ss_pred CCCCCHHHHHHhhcc
Q 030155 17 PIRTRERDIKRHFEP 31 (182)
Q Consensus 17 p~~~~e~~L~~~F~~ 31 (182)
|.+.+-.++..++.+
T Consensus 23 ~~~~tv~~~~~~lrk 37 (87)
T cd01612 23 SATQSFQAVIDFLRK 37 (87)
T ss_pred CCCCCHHHHHHHHHH
Confidence 334445555544443
No 284
>PRK15463 cold shock-like protein CspF; Provisional
Probab=24.79 E-value=56 Score=20.71 Aligned_cols=50 Identities=8% Similarity=-0.067 Sum_probs=28.9
Q ss_pred CCceEEEEEeCCEEEEEeCCH-HHH---HHHHHhc-CCCccCCcEEEEEEeecCC
Q 030155 32 YGNVLHVRIRRNFAFVQFETQ-EEA---TKALEST-DRSKLVDRVISVEYALKDD 81 (182)
Q Consensus 32 ~G~i~~~~i~~g~afV~f~~~-~~a---~~Ai~~l-~g~~~~g~~l~V~~a~~~~ 81 (182)
.|.|+...-.+||+||+=.+- +++ ..||... ....-.|..|..++.....
T Consensus 6 ~G~Vk~fn~~kGfGFI~~~~g~~DvFvH~sal~~~g~~~l~~G~~V~f~v~~~~~ 60 (70)
T PRK15463 6 TGIVKTFDGKSGKGLITPSDGRKDVQVHISALNLRDAEELTTGLRVEFCRINGLR 60 (70)
T ss_pred eEEEEEEeCCCceEEEecCCCCccEEEEehhhhhcCCCCCCCCCEEEEEEEECCC
Confidence 366776666799999977642 222 2344332 1223367777777766443
No 285
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=24.70 E-value=38 Score=31.01 Aligned_cols=64 Identities=22% Similarity=0.237 Sum_probs=44.9
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030155 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
+||+.|- ....+..-|..++..+++++...+ ...-|+++|.-...|..|. .|.++.+....|++
T Consensus 513 ~i~~~~~-~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~-s~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 513 TIFVANG-HGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAK-SLPNKKFASKCLKS 584 (681)
T ss_pred ceecccc-cccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhh-ccccccccccceec
Confidence 7788776 455666778888888888776655 2446889999888877665 46777766555444
No 286
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=24.57 E-value=1.9e+02 Score=18.10 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=28.4
Q ss_pred CCHHHHHHhhccCC-ceEEEEE-e---CC---EEEEEeC-CHHHHHHHHHhcCC
Q 030155 20 TRERDIKRHFEPYG-NVLHVRI-R---RN---FAFVQFE-TQEEATKALESTDR 64 (182)
Q Consensus 20 ~~e~~L~~~F~~~G-~i~~~~i-~---~g---~afV~f~-~~~~a~~Ai~~l~g 64 (182)
..-.++.++|+.+| +++.|.- + .. +-||+|+ ..+..++||+.|..
T Consensus 12 G~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 12 GALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred cHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 34577888898887 5565543 1 11 3467776 45566777777654
No 287
>PRK10943 cold shock-like protein CspC; Provisional
Probab=24.54 E-value=58 Score=20.50 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=28.0
Q ss_pred CCceEEEEEeCCEEEEEeCCH-HHH---HHHHHhcCC--CccCCcEEEEEEeecC
Q 030155 32 YGNVLHVRIRRNFAFVQFETQ-EEA---TKALESTDR--SKLVDRVISVEYALKD 80 (182)
Q Consensus 32 ~G~i~~~~i~~g~afV~f~~~-~~a---~~Ai~~l~g--~~~~g~~l~V~~a~~~ 80 (182)
.|.|+...-.+||+||+=.+- +++ ..||+. .+ ....|..|..++....
T Consensus 5 ~G~Vk~f~~~kGfGFI~~~~g~~dvFvH~s~l~~-~g~~~l~~G~~V~f~~~~~~ 58 (69)
T PRK10943 5 KGQVKWFNESKGFGFITPADGSKDVFVHFSAIQG-NGFKTLAEGQNVEFEIQDGQ 58 (69)
T ss_pred ceEEEEEeCCCCcEEEecCCCCeeEEEEhhHccc-cCCCCCCCCCEEEEEEEECC
Confidence 466776666799999976542 222 233432 22 2336777777776644
No 288
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=24.48 E-value=1.6e+02 Score=20.48 Aligned_cols=36 Identities=11% Similarity=0.236 Sum_probs=23.6
Q ss_pred HHHHHhhccCCceEEE--EE----eCCEEEEEeCCHHHHHHHH
Q 030155 23 RDIKRHFEPYGNVLHV--RI----RRNFAFVQFETQEEATKAL 59 (182)
Q Consensus 23 ~~L~~~F~~~G~i~~~--~i----~~g~afV~f~~~~~a~~Ai 59 (182)
-+|.+++.+.| |..- .| ..-||++++.+.+...++|
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEENLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCcccEEEEEEEcChHHHHHHH
Confidence 46888888888 3333 33 2348999999666655554
No 289
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=24.32 E-value=36 Score=28.69 Aligned_cols=12 Identities=33% Similarity=0.695 Sum_probs=7.0
Q ss_pred CHHHHHHhhccC
Q 030155 21 RERDIKRHFEPY 32 (182)
Q Consensus 21 ~e~~L~~~F~~~ 32 (182)
...+|..+|+.|
T Consensus 170 pp~dLw~WyEpy 181 (453)
T KOG2888|consen 170 PPADLWDWYEPY 181 (453)
T ss_pred ChhHHHHHhhhh
Confidence 345566666665
No 290
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=24.18 E-value=70 Score=25.71 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=31.8
Q ss_pred CCHHHHHHhhccCCceE-EEEEe-------------CCEEE--EEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030155 20 TRERDIKRHFEPYGNVL-HVRIR-------------RNFAF--VQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 20 ~~e~~L~~~F~~~G~i~-~~~i~-------------~g~af--V~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
++.+++++.|.+||.+. .|.+. ..+|| |...-.+....||+.|-.....|-.|.|
T Consensus 140 ~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~ 210 (248)
T PF05711_consen 140 VSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIF 210 (248)
T ss_dssp HHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred cCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEE
Confidence 35678889999998422 23331 22444 4445667777788777666666655544
No 291
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=24.13 E-value=56 Score=27.03 Aligned_cols=53 Identities=11% Similarity=0.030 Sum_probs=22.9
Q ss_pred CEEEEccCCCC----CCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHH
Q 030155 8 KTLFVINFDPI----RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALE 60 (182)
Q Consensus 8 ~~l~V~nL~p~----~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~ 60 (182)
+.+++|||+|. .-|.++|.+...+.-+-....+..||++..-...+..++.++
T Consensus 277 ~~~i~Gnidp~~ll~~gt~eeI~~~v~~~l~~~~~Il~~gcgi~~~tp~eni~a~v~ 333 (340)
T TIGR01463 277 QASLVGNLSPFSTLMNGTPEKVKKLAKEVLYNGGDIVMPGCDIDWMTPLENLKAMIE 333 (340)
T ss_pred ceEEEecCChHHHhcCCCHHHHHHHHHHHHHcCCeEECCCCCCCCCCCHHHHHHHHH
Confidence 45667777542 124455444433321101112344555544444444444443
No 292
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=24.03 E-value=58 Score=26.55 Aligned_cols=21 Identities=10% Similarity=0.214 Sum_probs=12.9
Q ss_pred CCCCCHHHHHHhhccCCceEE
Q 030155 17 PIRTRERDIKRHFEPYGNVLH 37 (182)
Q Consensus 17 p~~~~e~~L~~~F~~~G~i~~ 37 (182)
+.+|.++.|..|++.|-+|+.
T Consensus 77 ~KnTp~eHl~~FY~tfeeVk~ 97 (307)
T COG1897 77 SKNTPAEHLNSFYCTFEEVKD 97 (307)
T ss_pred CCCCcHHHHHHHhhcHHHHhh
Confidence 455666666666666655544
No 293
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=23.60 E-value=2.1e+02 Score=21.09 Aligned_cols=51 Identities=20% Similarity=0.423 Sum_probs=32.0
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhcc-CC-ceEEEEE---eCC--EEEEEeCCHHHHHHHHH
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEP-YG-NVLHVRI---RRN--FAFVQFETQEEATKALE 60 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~-~G-~i~~~~i---~~g--~afV~f~~~~~a~~Ai~ 60 (182)
+.-+|+-.+ ..+..+|++.+++ |+ .|..|.. +.| -|||.+....+|.+...
T Consensus 83 N~yvF~Vd~---kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQ---RANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcC---CCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 344444444 6889999988886 55 4445443 333 59999987776655443
No 294
>PF13773 DUF4170: Domain of unknown function (DUF4170)
Probab=23.55 E-value=1.2e+02 Score=19.30 Aligned_cols=30 Identities=10% Similarity=-0.004 Sum_probs=23.6
Q ss_pred EEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030155 47 VQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 47 V~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
--|.+.++|.+|++..-..++++..++--+
T Consensus 30 G~fp~y~~A~~aWrakAq~TVDnA~mRYfI 59 (69)
T PF13773_consen 30 GIFPDYASAYAAWRAKAQRTVDNAHMRYFI 59 (69)
T ss_pred ecCCChHHHHHHHHHHHhCchhcceeeEEE
Confidence 358899999999999888888886655433
No 295
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=23.25 E-value=2e+02 Score=18.03 Aligned_cols=44 Identities=25% Similarity=0.337 Sum_probs=27.8
Q ss_pred CHHHHHHhhccCC-ceEEEEE-e----CC--EEEEEeCC---HHHHHHHHHhcCC
Q 030155 21 RERDIKRHFEPYG-NVLHVRI-R----RN--FAFVQFET---QEEATKALESTDR 64 (182)
Q Consensus 21 ~e~~L~~~F~~~G-~i~~~~i-~----~g--~afV~f~~---~~~a~~Ai~~l~g 64 (182)
.-.+|.++|.++| +|..+.. + .. .-||+++. .++.+++++.|..
T Consensus 14 ~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 14 ALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4577888999987 6766654 1 11 34566663 5666777776655
No 296
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=23.22 E-value=87 Score=23.80 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=35.5
Q ss_pred CCCCCCHHHHHHhhccCCceEEEEE---eCC--E-EEEEeCCHHH---HHHHHHhcCCCccCCcEEEEEEeecC
Q 030155 16 DPIRTRERDIKRHFEPYGNVLHVRI---RRN--F-AFVQFETQEE---ATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 16 ~p~~~~e~~L~~~F~~~G~i~~~~i---~~g--~-afV~f~~~~~---a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
||..++-++|.++|-+.-.-+.+.- -.| | .-|.+.+.++ |++.++.|+...+.+.+|.+++...+
T Consensus 65 Dp~~isy~~LL~~ff~ihDPT~~nrQGnD~GtqYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~IvteI~p~~ 138 (174)
T COG0225 65 DPKVISYEELLEVFFEIHDPTSLNRQGNDRGTQYRSAIYYTNEEQKAIAEASIEELQASGYFKKPIVTEIEPAK 138 (174)
T ss_pred CCccccHHHHHHHHheecCCCCCCccCCcccccceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEEeeccc
Confidence 3667888888887766432222111 011 2 2344455544 44455566665666777888776543
No 297
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=23.20 E-value=2.3e+02 Score=26.15 Aligned_cols=6 Identities=0% Similarity=0.440 Sum_probs=2.6
Q ss_pred EEEEcc
Q 030155 9 TLFVIN 14 (182)
Q Consensus 9 ~l~V~n 14 (182)
.|.|..
T Consensus 41 SiViSD 46 (1027)
T KOG3580|consen 41 SIVISD 46 (1027)
T ss_pred eEEEee
Confidence 444443
No 298
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=23.02 E-value=2.3e+02 Score=20.42 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=31.5
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCC
Q 030155 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 64 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g 64 (182)
.|-||+- .+|++++.++.+.-..++.+. -.+..| +++++.++++.|..
T Consensus 76 ~lalGd~---~Ls~eEf~~L~~~~~~LV~~r--g~WV~l---d~~~l~~~~~~~~~ 123 (141)
T PF12419_consen 76 ELALGDE---ELSEEEFEQLVEQKRPLVRFR--GRWVEL---DPEELRRALAFLEK 123 (141)
T ss_pred EEEECCE---ECCHHHHHHHHHcCCCeEEEC--CEEEEE---CHHHHHHHHHHHHh
Confidence 3556665 478999999998887776652 223333 56777777766554
No 299
>PRK09890 cold shock protein CspG; Provisional
Probab=23.00 E-value=62 Score=20.43 Aligned_cols=48 Identities=13% Similarity=0.223 Sum_probs=27.0
Q ss_pred CCceEEEEEeCCEEEEEeCCH-HHH---HHHHHhcCC-Cc-cCCcEEEEEEeecC
Q 030155 32 YGNVLHVRIRRNFAFVQFETQ-EEA---TKALESTDR-SK-LVDRVISVEYALKD 80 (182)
Q Consensus 32 ~G~i~~~~i~~g~afV~f~~~-~~a---~~Ai~~l~g-~~-~~g~~l~V~~a~~~ 80 (182)
.|.|+...-.+||+||+=.+- +++ ..||+. ++ .. ..|..|..++...+
T Consensus 6 ~G~Vk~f~~~kGfGFI~~~~g~~dvFvH~s~l~~-~~~~~l~~G~~V~f~~~~~~ 59 (70)
T PRK09890 6 TGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQS-NEFRTLNENQKVEFSIEQGQ 59 (70)
T ss_pred eEEEEEEECCCCcEEEecCCCCceEEEEEeeecc-CCCCCCCCCCEEEEEEEECC
Confidence 466776666799999977643 222 123332 22 22 35777777666543
No 300
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=22.98 E-value=4.8e+02 Score=24.00 Aligned_cols=75 Identities=8% Similarity=0.111 Sum_probs=50.6
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCC-ceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecCC
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 81 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G-~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 81 (182)
...|.|.+......+.+.+++++++-+ ....+.+..+-..|.|.+.++..+|...|....-.+..+-+.++...+
T Consensus 40 ~pavqis~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~r~~~~~~q~~a~~~l~~~l~~~y~valnl~~~~P 115 (604)
T PRK12933 40 DAAVQVSAKAGLLLNVVELRQLLQAQGINVKRIDQKEGKTLIVLDDDSQQSQAKTLLSSMVKEPKELTLSLASAAP 115 (604)
T ss_pred CCeEEEecCCCCcchHHHHHHHHHHCCCCCceEEEeCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEecCccCc
Confidence 345666655223445678888888876 556666677889999999998888877666554445566666655433
No 301
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=22.89 E-value=2.2e+02 Score=19.44 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=14.5
Q ss_pred CCEEEEEeCCHHHHHHHH
Q 030155 42 RNFAFVQFETQEEATKAL 59 (182)
Q Consensus 42 ~g~afV~f~~~~~a~~Ai 59 (182)
....+|+|.+.+.|..+.
T Consensus 53 tr~vviEFps~~~ar~~y 70 (96)
T COG5470 53 TRNVVIEFPSLEAARDCY 70 (96)
T ss_pred ccEEEEEcCCHHHHHHHh
Confidence 457899999999887764
No 302
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=22.77 E-value=2.2e+02 Score=18.30 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=19.4
Q ss_pred EEEEccCCCCCCC--HHHHHHhhc--cCCceEEEEEeCCEEE
Q 030155 9 TLFVINFDPIRTR--ERDIKRHFE--PYGNVLHVRIRRNFAF 46 (182)
Q Consensus 9 ~l~V~nL~p~~~~--e~~L~~~F~--~~G~i~~~~i~~g~af 46 (182)
.|.|+.. |.-++ -+.+...+. .|+.|..+.+.+.|-|
T Consensus 4 ~V~V~~k-~gv~Dp~G~ai~~~l~~lg~~~v~~Vr~~k~~~l 44 (80)
T PRK05974 4 KVTVTLK-EGVLDPQGQAIKGALGSLGYDGVEDVRQGKYFEL 44 (80)
T ss_pred EEEEEEC-CCCcChHHHHHHHHHHHcCCCCcceEEEEEEEEE
Confidence 5677655 43222 133444443 4445777777665554
No 303
>PRK13828 rimM 16S rRNA-processing protein RimM; Provisional
Probab=22.55 E-value=1.1e+02 Score=22.55 Aligned_cols=31 Identities=10% Similarity=-0.023 Sum_probs=21.2
Q ss_pred eEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCc
Q 030155 35 VLHVRIRRNFAFVQFETQEEATKALESTDRSK 66 (182)
Q Consensus 35 i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~ 66 (182)
|..+.+.++..+|.|+...+.++|-+ |.|..
T Consensus 34 v~~~r~~~~~~lv~f~gi~dr~~Ae~-L~g~~ 64 (161)
T PRK13828 34 VALARPAKDGLVARLKGVATREAAEA-LRGLE 64 (161)
T ss_pred EEEEEEECCEEEEEECCCCCHHHHHH-hcCCE
Confidence 34444467888999998888877754 55543
No 304
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=22.52 E-value=29 Score=21.76 Aligned_cols=8 Identities=13% Similarity=-0.022 Sum_probs=3.2
Q ss_pred CCcEEEEE
Q 030155 68 VDRVISVE 75 (182)
Q Consensus 68 ~g~~l~V~ 75 (182)
.|..|.|.
T Consensus 48 ~g~~v~v~ 55 (78)
T cd04489 48 EGMEVLVR 55 (78)
T ss_pred CCCEEEEE
Confidence 34444433
No 305
>PLN02655 ent-kaurene oxidase
Probab=22.45 E-value=2e+02 Score=24.77 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=35.8
Q ss_pred EEEccCCCCC-C--CHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHh
Q 030155 10 LFVINFDPIR-T--RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 61 (182)
Q Consensus 10 l~V~nL~p~~-~--~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~ 61 (182)
=+|||| ..- . -...+.+++.+||+|..+.+ -+.-+|...+.+.++.++.+
T Consensus 8 P~iG~l-~~~~~~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvv~~pe~~k~il~~ 60 (466)
T PLN02655 8 PVIGNL-LQLKEKKPHRTFTKWSEIYGPIYTIRT-GASSVVVLNSTEVAKEAMVT 60 (466)
T ss_pred CccccH-HHcCCCchhHHHHHHHHHhCCeEEEEE-CCEeEEEeCCHHHHHHHHHh
Confidence 367886 321 1 24678888999999877775 34567778899999988864
No 306
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=22.39 E-value=1.8e+02 Score=23.33 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=35.9
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCC-ceEEEEE----------eCCEEEEEeCCHHHHHHHHHh
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRI----------RRNFAFVQFETQEEATKALES 61 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G-~i~~~~i----------~~g~afV~f~~~~~a~~Ai~~ 61 (182)
.-+|-|.-| |..-.++-++.+|+..| .|.--.+ ...|..|+.....-.++|+..
T Consensus 118 pL~v~~p~l-p~rGg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~S~y~~l~L~g~~rl~daL~H 182 (245)
T PF12623_consen 118 PLEVRLPAL-PCRGGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGDSRYVDLTLTGTVRLADALNH 182 (245)
T ss_pred ceEEEeeee-ecCCcHHHHHHhhcCcCceEEeEeccCCccCccccCCcceEEEEeeeEEHHHHHhh
Confidence 346778888 77788999999999999 3332222 134666666666666666553
No 307
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=22.37 E-value=2e+02 Score=25.21 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=35.0
Q ss_pred EEEccCCCCCC--CHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHh
Q 030155 10 LFVINFDPIRT--RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 61 (182)
Q Consensus 10 l~V~nL~p~~~--~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~ 61 (182)
-++||| ..-. ....+.++..+||.|..+.+. +.-+|...+.+.++.++..
T Consensus 40 Pl~G~l-~~~~~~~~~~~~~~~~~yG~i~~~~~g-~~~~vvv~dpe~~~~vl~~ 91 (504)
T PLN00110 40 PLLGAL-PLLGNMPHVALAKMAKRYGPVMFLKMG-TNSMVVASTPEAARAFLKT 91 (504)
T ss_pred Ceeech-hhcCCchHHHHHHHHHHhCCeEEEEcC-CccEEEECCHHHHHHHHHh
Confidence 356887 3222 245677888899998777652 2457888899999998864
No 308
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=22.31 E-value=1e+02 Score=24.82 Aligned_cols=22 Identities=18% Similarity=0.150 Sum_probs=18.4
Q ss_pred EEEEccCCCCCCCHHHHHHhhcc
Q 030155 9 TLFVINFDPIRTRERDIKRHFEP 31 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~ 31 (182)
.++|+|| |+.++..-|.+++..
T Consensus 107 ~~vv~Nl-PY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANL-PYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeC-CccchHHHHHHHHhc
Confidence 5789999 999998888888754
No 309
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=22.28 E-value=2.1e+02 Score=17.91 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=33.3
Q ss_pred EEEccCCCCCCCHHHHHHhhc-cCCce-EEEEE---eCCEEEEEeCCHHHHHHHHHhcC
Q 030155 10 LFVINFDPIRTRERDIKRHFE-PYGNV-LHVRI---RRNFAFVQFETQEEATKALESTD 63 (182)
Q Consensus 10 l~V~nL~p~~~~e~~L~~~F~-~~G~i-~~~~i---~~g~afV~f~~~~~a~~Ai~~l~ 63 (182)
++.-.| +..++-++|..... +|+.. ..+.| ...--+|.+.+.++.+.|+..+.
T Consensus 12 ~~~~~~-~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 12 TRRLSV-PRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEEEE-CCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHHHHHHHHHHHH
Confidence 334456 56788888776654 34421 23333 12234899999999999998654
No 310
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=22.00 E-value=1.9e+02 Score=25.42 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=36.5
Q ss_pred CEEEE-ccCCCCCCCHHHHHHhhccCC----c--eEEEEE--eC------------CEEEEEeCCHHHHHHHHHhcCCC
Q 030155 8 KTLFV-INFDPIRTRERDIKRHFEPYG----N--VLHVRI--RR------------NFAFVQFETQEEATKALESTDRS 65 (182)
Q Consensus 8 ~~l~V-~nL~p~~~~e~~L~~~F~~~G----~--i~~~~i--~~------------g~afV~f~~~~~a~~Ai~~l~g~ 65 (182)
.+|.+ |.. | -++.+.|++++.... . |..+.+ +. -.++||..+..++++.|+.+|.-
T Consensus 98 ~vLVl~GD~-P-Lit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~eek~I~eiNtG 174 (460)
T COG1207 98 DVLVLYGDV-P-LITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKEINTG 174 (460)
T ss_pred cEEEEeCCc-c-cCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHHhcCcEEeee
Confidence 34444 445 5 488898887776552 2 233333 21 16899999999999988877753
No 311
>COG4274 Uncharacterized conserved protein [Function unknown]
Probab=21.97 E-value=2.8e+02 Score=19.16 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=25.5
Q ss_pred HHHHHhhccCC-ceEEEEEeCC----EEEEEeCCHHHHHHHHHh
Q 030155 23 RDIKRHFEPYG-NVLHVRIRRN----FAFVQFETQEEATKALES 61 (182)
Q Consensus 23 ~~L~~~F~~~G-~i~~~~i~~g----~afV~f~~~~~a~~Ai~~ 61 (182)
+.++++|+++| .++.+.+..| .+++|-.+...+..+.-.
T Consensus 33 ~av~~~les~G~k~~~~y~T~GeYD~V~i~EapDda~~~~~~l~ 76 (104)
T COG4274 33 AAVRALLESMGGKVKEQYWTLGEYDVVAIVEAPDDAVATRFSLA 76 (104)
T ss_pred HHHHHHHHHcCcEEEEEEEeeccccEEEEEecCCHHHHHHHHHH
Confidence 56788999998 6666666444 356666666666555433
No 312
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=21.81 E-value=67 Score=20.22 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=25.9
Q ss_pred CCceEEEEEeCCEEEEEeCCH-HHH---HHHHHhcCC-C-ccCCcEEEEEEeecC
Q 030155 32 YGNVLHVRIRRNFAFVQFETQ-EEA---TKALESTDR-S-KLVDRVISVEYALKD 80 (182)
Q Consensus 32 ~G~i~~~~i~~g~afV~f~~~-~~a---~~Ai~~l~g-~-~~~g~~l~V~~a~~~ 80 (182)
.|.|+...-.+||+||+=.+- +++ ..||.. .+ . .-.|..|..++....
T Consensus 6 ~G~Vk~f~~~kGfGFI~~~~g~~dvfvH~s~l~~-~g~~~l~~G~~V~f~~~~~~ 59 (70)
T PRK10354 6 TGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQN-DGYKSLDEGQKVSFTIESGA 59 (70)
T ss_pred eEEEEEEeCCCCcEEEecCCCCccEEEEEeeccc-cCCCCCCCCCEEEEEEEECC
Confidence 466666665799999976542 221 123321 22 2 235666776666543
No 313
>PLN02936 epsilon-ring hydroxylase
Probab=21.79 E-value=87 Score=27.25 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=29.7
Q ss_pred HHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHh
Q 030155 22 ERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 61 (182)
Q Consensus 22 e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~ 61 (182)
...|.+++.+||+|..+.+ -+.-.|.+.+++.++.++..
T Consensus 39 ~~~~~~~~~~yG~i~~~~~-g~~~~vvv~~pe~~~~il~~ 77 (489)
T PLN02936 39 FLPLFKWMNEYGPVYRLAA-GPRNFVVVSDPAIAKHVLRN 77 (489)
T ss_pred HHHHHHHHHHcCCEEEEcc-CCccEEEEcCHHHHHHHHHh
Confidence 4567888999999887765 23466778899999998864
No 314
>PRK10905 cell division protein DamX; Validated
Probab=21.65 E-value=2.5e+02 Score=23.63 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=35.5
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCc---eEEEEEeCC---E--EEEEeCCHHHHHHHHHhcCCC
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPYGN---VLHVRIRRN---F--AFVQFETQEEATKALESTDRS 65 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~---i~~~~i~~g---~--afV~f~~~~~a~~Ai~~l~g~ 65 (182)
..-+|-|+.+ . +++.|.+|..+.|- +....+..| | -+-.|.+.++|+.||..|-..
T Consensus 246 ~~YTLQL~A~-S---s~~~l~~fakKlgL~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 246 SHYTLQLSSS-S---NYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred CceEEEEEec-C---CHHHHHHHHHHcCCCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 3456667666 3 57788888777752 111122333 2 233789999999999988653
No 315
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.60 E-value=80 Score=20.84 Aligned_cols=23 Identities=22% Similarity=0.470 Sum_probs=13.0
Q ss_pred EEEccCCCCCCCHHHHHHhhccCC
Q 030155 10 LFVINFDPIRTRERDIKRHFEPYG 33 (182)
Q Consensus 10 l~V~nL~p~~~~e~~L~~~F~~~G 33 (182)
-||--| ....++++|+..|+..|
T Consensus 51 y~V~Fl-~~~~s~eev~~ele~mg 73 (88)
T COG4009 51 YYVVFL-EEVESEEEVERELEDMG 73 (88)
T ss_pred EEEEEE-eccCCHHHHHHHHHHhC
Confidence 334444 34456677777776665
No 316
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=21.40 E-value=1.1e+02 Score=20.29 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=18.9
Q ss_pred CCEEEEEeCCHHHHHHHHHhcCCC
Q 030155 42 RNFAFVQFETQEEATKALESTDRS 65 (182)
Q Consensus 42 ~g~afV~f~~~~~a~~Ai~~l~g~ 65 (182)
.||.||++.-.+.+..+|..+.|.
T Consensus 59 pGYvFv~~~~~~~~~~~i~~~~~v 82 (106)
T smart00738 59 PGYIFVEADLEDEVWTAIRGTPGV 82 (106)
T ss_pred CCEEEEEEEeCCcHHHHHhcCCCc
Confidence 499999998766667788777764
No 317
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=21.30 E-value=1.8e+02 Score=23.90 Aligned_cols=40 Identities=10% Similarity=0.299 Sum_probs=28.9
Q ss_pred CCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCC
Q 030155 19 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 64 (182)
Q Consensus 19 ~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g 64 (182)
.+|+++|+.+|..+.+ .+. ...|.+.+.+.|+.+++.|..
T Consensus 128 ~Vtd~ei~~~y~~~~~--~~~----v~hIlv~~~~~A~~v~~~l~~ 167 (298)
T PRK04405 128 KVTNSQLKKAWKSYQP--KVT----VQHILVSKKSTAETVIKKLKD 167 (298)
T ss_pred CCCHHHHHHHHHHhhh--hEE----EEEEEecChHHHHHHHHHHHC
Confidence 5799999999988753 222 245666788889888887643
No 318
>PRK00957 methionine synthase; Provisional
Probab=21.28 E-value=95 Score=25.31 Aligned_cols=56 Identities=14% Similarity=0.026 Sum_probs=31.5
Q ss_pred CCCEEEEccCCCCCC---CHHHHHHhhccCCc---eEEEEEeCCEEEEEeCCHHHHHHHHHhc
Q 030155 6 PTKTLFVINFDPIRT---RERDIKRHFEPYGN---VLHVRIRRNFAFVQFETQEEATKALEST 62 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~---~e~~L~~~F~~~G~---i~~~~i~~g~afV~f~~~~~a~~Ai~~l 62 (182)
....|.+|++++.++ +.++|.+.+.+.-+ ...+.|..+|+|-. ...+.+.+.|+.|
T Consensus 236 ~~k~l~~GvId~~~~~~e~~e~v~~~i~~~~~~~~~~~l~lsp~CGl~~-~~~~~~~~kL~~l 297 (305)
T PRK00957 236 IGKKIGFGCVDTKSKSVESVDEIKALIEEGIEILGAENILIDPDCGMRM-LPRDVAFEKLKNM 297 (305)
T ss_pred CCCEEEEEEEcCCCCCCCCHHHHHHHHHHHHHhcCHHHEEECCCcCCCc-CCHHHHHHHHHHH
Confidence 356788898865332 45666655554322 33466666677633 3455566555543
No 319
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=21.08 E-value=2.7e+02 Score=18.68 Aligned_cols=53 Identities=11% Similarity=0.290 Sum_probs=29.9
Q ss_pred CCCCEEEEccCCCCCCCHHHHH-------HhhccCC-ceEEEEE-------------eCC-EEEEEeCCHHHHHHHHH
Q 030155 5 RPTKTLFVINFDPIRTRERDIK-------RHFEPYG-NVLHVRI-------------RRN-FAFVQFETQEEATKALE 60 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~-------~~F~~~G-~i~~~~i-------------~~g-~afV~f~~~~~a~~Ai~ 60 (182)
..=.++||-+- +++++++. +++.+.| +|..+.. ..| |.++.|.-..++.+.++
T Consensus 6 r~YE~~~Il~p---~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 6 NKYETMYLLKP---DLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred cceeEEEEECC---CCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 33345666433 35555544 4455544 6666653 133 67888987667666665
No 320
>PHA01632 hypothetical protein
Probab=21.02 E-value=85 Score=19.18 Aligned_cols=19 Identities=11% Similarity=0.410 Sum_probs=14.6
Q ss_pred EccCCCCCCCHHHHHHhhcc
Q 030155 12 VINFDPIRTRERDIKRHFEP 31 (182)
Q Consensus 12 V~nL~p~~~~e~~L~~~F~~ 31 (182)
|..+ |..-|+++|++++.+
T Consensus 21 ieqv-p~kpteeelrkvlpk 39 (64)
T PHA01632 21 IEQV-PQKPTEEELRKVLPK 39 (64)
T ss_pred hhhc-CCCCCHHHHHHHHHH
Confidence 4567 778899999887655
No 321
>PRK07377 hypothetical protein; Provisional
Probab=21.01 E-value=1.6e+02 Score=22.66 Aligned_cols=31 Identities=13% Similarity=0.320 Sum_probs=22.2
Q ss_pred HHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHh
Q 030155 23 RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 61 (182)
Q Consensus 23 ~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~ 61 (182)
+.|+.+|++|.- ..-+|+|++.++.++|+..
T Consensus 97 ~~l~~~~~~y~~--------rlElv~y~~~~~l~~aL~~ 127 (184)
T PRK07377 97 DQLRTILDKYHL--------RLELVVYPDLQALEQALRD 127 (184)
T ss_pred HHHHHHHHHhCc--------eeeEEecCCHHHHHHHHhc
Confidence 345667777742 3457899999999999864
No 322
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=20.82 E-value=22 Score=25.09 Aligned_cols=11 Identities=27% Similarity=0.461 Sum_probs=8.7
Q ss_pred CCCEEEEccCCC
Q 030155 6 PTKTLFVINFDP 17 (182)
Q Consensus 6 ~~~~l~V~nL~p 17 (182)
....||||++ |
T Consensus 91 ~~~~lyvGG~-p 101 (131)
T PF00054_consen 91 VDGPLYVGGL-P 101 (131)
T ss_dssp ECSEEEESSS-S
T ss_pred cccCEEEccC-C
Confidence 3456999999 7
No 323
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=20.81 E-value=1.8e+02 Score=22.06 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=21.3
Q ss_pred CCCCHHHHHHhhccCCc-eEEEEEe-CCEE-EEEeC
Q 030155 18 IRTRERDIKRHFEPYGN-VLHVRIR-RNFA-FVQFE 50 (182)
Q Consensus 18 ~~~~e~~L~~~F~~~G~-i~~~~i~-~g~a-fV~f~ 50 (182)
..+|-++|.++|.+|+. |..-.|. -.|. +|.|+
T Consensus 107 hgcT~e~I~~~F~~ys~~~~~e~~~~~eFD~~i~Fe 142 (175)
T PF12993_consen 107 HGCTLEDILELFHKYSDNVHCEEMDNGEFDYLIYFE 142 (175)
T ss_pred CCcCHHHHHHHHHHhcCCeEEEeecCCCCCEEEEec
Confidence 46899999999999985 3333332 2343 34555
No 324
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=20.77 E-value=1.5e+02 Score=20.96 Aligned_cols=31 Identities=39% Similarity=0.437 Sum_probs=21.9
Q ss_pred CCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCC
Q 030155 19 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS 65 (182)
Q Consensus 19 ~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~ 65 (182)
.+++++|.-+.++.|. +.+.|.+||+..+|-
T Consensus 74 ~i~~edI~lv~~q~gv----------------s~~~A~~AL~~~~gD 104 (115)
T PRK06369 74 EIPEEDIELVAEQTGV----------------SEEEARKALEEANGD 104 (115)
T ss_pred CCCHHHHHHHHHHHCc----------------CHHHHHHHHHHcCCc
Confidence 3566666666666652 678999999987764
No 325
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=20.73 E-value=1.5e+02 Score=20.96 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=21.3
Q ss_pred CCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCC
Q 030155 20 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS 65 (182)
Q Consensus 20 ~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~ 65 (182)
+++++|.-+.++.|. +.+.|.+||+..+|-
T Consensus 77 i~~eDI~lV~eq~gv----------------s~e~A~~AL~~~~gD 106 (116)
T TIGR00264 77 ITEDDIELVMKQCNV----------------SKEEARRALEECGGD 106 (116)
T ss_pred CCHHHHHHHHHHhCc----------------CHHHHHHHHHHcCCC
Confidence 556666666666652 678999999987774
No 326
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=20.69 E-value=1.3e+02 Score=21.97 Aligned_cols=23 Identities=17% Similarity=0.106 Sum_probs=18.5
Q ss_pred CEEEEccCCCCCCCHHHHHHhhcc
Q 030155 8 KTLFVINFDPIRTRERDIKRHFEP 31 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~ 31 (182)
.-++|+|+ |+.++.+.|..++..
T Consensus 78 ~d~vi~n~-Py~~~~~~i~~~l~~ 100 (169)
T smart00650 78 PYKVVGNL-PYNISTPILFKLLEE 100 (169)
T ss_pred CCEEEECC-CcccHHHHHHHHHhc
Confidence 35778999 899988888888765
No 327
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=20.67 E-value=1.1e+02 Score=25.11 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=18.6
Q ss_pred EEEEccCCCCCCCHHHHHHhhcc
Q 030155 9 TLFVINFDPIRTRERDIKRHFEP 31 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~ 31 (182)
.+.|+|| |+.++...|.+++..
T Consensus 103 d~VvaNl-PY~Istpil~~ll~~ 124 (294)
T PTZ00338 103 DVCVANV-PYQISSPLVFKLLAH 124 (294)
T ss_pred CEEEecC-CcccCcHHHHHHHhc
Confidence 4778999 999999988888864
No 328
>TIGR02223 ftsN cell division protein FtsN. FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by Pfam model pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis.
Probab=20.56 E-value=2e+02 Score=23.84 Aligned_cols=64 Identities=9% Similarity=0.196 Sum_probs=41.0
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCC--E---EEEEeCCHHHHHHHHHhcCCCccCCcEE
Q 030155 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--F---AFVQFETQEEATKALESTDRSKLVDRVI 72 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g--~---afV~f~~~~~a~~Ai~~l~g~~~~g~~l 72 (182)
-.|-||-+ ....+.+.|..-+...|--..|....+ + -+--|.+.++|+.++..|...-|.+..|
T Consensus 228 ~~lQvGAF-~~~~~Ae~l~akL~~~G~~~~i~~~~g~~~yRV~vGPf~sr~~A~~~~~~Lk~~Gi~~~iv 296 (298)
T TIGR02223 228 AALQCGAY-ANKEQAESVRAKLAFLGISSKITTTDGGKWYRVVSGPYKNKDDAEKDLNKLKVAGVAGCII 296 (298)
T ss_pred EEEEEeec-CCHHHHHHHHHHHHhcCCceEEEecCCceEEEEEeCCCCCHHHHHHHHHHHHHcCCCCeEe
Confidence 34556777 555556677777777773233333333 2 1225778899999999998877777655
No 329
>PLN00168 Cytochrome P450; Provisional
Probab=20.48 E-value=2.8e+02 Score=24.30 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=39.0
Q ss_pred CCEEEEccCCCCCC-----CHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccC
Q 030155 7 TKTLFVINFDPIRT-----RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 68 (182)
Q Consensus 7 ~~~l~V~nL~p~~~-----~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 68 (182)
...-+|||| ..-. -...+.++..+||.|..+.+. +.-+|...+.+.++.++.. ++..+.
T Consensus 41 ~~~pl~G~l-~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g-~~~~vvv~dpe~~~~il~~-~~~~f~ 104 (519)
T PLN00168 41 PAVPLLGSL-VWLTNSSADVEPLLRRLIARYGPVVSLRVG-SRLSVFVADRRLAHAALVE-RGAALA 104 (519)
T ss_pred CCCcccccH-HhhccccccHHHHHHHHHHHhCCeEEEEcC-CccEEEECCHHHHHHHHHh-cCCccc
Confidence 345667887 4211 124567778899998887763 3567778899999998864 344343
No 330
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=20.46 E-value=2.2e+02 Score=23.05 Aligned_cols=56 Identities=16% Similarity=0.115 Sum_probs=26.4
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEE------EEe--CCHHHHHHHHHhcCC
Q 030155 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAF------VQF--ETQEEATKALESTDR 64 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~af------V~f--~~~~~a~~Ai~~l~g 64 (182)
+.|.|.++ ++..-...|++++..+..+.--..++.... |.. .+.+.|.+++..+.+
T Consensus 181 ~~~~~~gi-~ES~la~~L~~i~~~~~~~~i~s~p~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 244 (255)
T COG1058 181 RVLRVFGI-GESSLAPTLKDLQDEQPNVTIASYPKDGEVRLRELVIRAEARDEEEADALLRWLEG 244 (255)
T ss_pred EEEEEcCC-ChHHHHHHHHHHHhcCCCCEEEecCCCCceeccceEEEEecCCHHHHHHHHHHHHH
Confidence 34455555 444444555666665543333222222111 333 566666666665443
No 331
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=20.43 E-value=76 Score=26.10 Aligned_cols=9 Identities=22% Similarity=0.445 Sum_probs=4.1
Q ss_pred EEEEccCCC
Q 030155 9 TLFVINFDP 17 (182)
Q Consensus 9 ~l~V~nL~p 17 (182)
.+++|||+|
T Consensus 267 ~~i~Gnidp 275 (326)
T cd03307 267 AALIGNVSP 275 (326)
T ss_pred eEEEeCCCh
Confidence 344455533
No 332
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=20.38 E-value=1.3e+02 Score=20.55 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=23.2
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhcc-C--CceEEEEE---eCCEEEEEeCC
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEP-Y--GNVLHVRI---RRNFAFVQFET 51 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~-~--G~i~~~~i---~~g~afV~f~~ 51 (182)
...-||||++ ...+- +.|.+...+ + |.+.-+.- ..||+|.++..
T Consensus 26 v~~GVyVg~~-S~rVR-d~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~ 75 (97)
T PRK11558 26 VRAGVYVGDV-SRRIR-EMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGE 75 (97)
T ss_pred cCCCcEEcCC-CHHHH-HHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCC
Confidence 3456999999 44444 334333332 2 33333322 25788777664
No 333
>PRK14594 rimM 16S rRNA-processing protein RimM; Provisional
Probab=20.34 E-value=1.3e+02 Score=22.37 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=21.0
Q ss_pred eEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCc
Q 030155 35 VLHVRIRRNFAFVQFETQEEATKALESTDRSK 66 (182)
Q Consensus 35 i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~ 66 (182)
|..+.+.++..+|.|+..++.++|-+ |.|..
T Consensus 51 v~~~r~~~~~~lvkf~gi~dr~~Ae~-L~g~~ 81 (166)
T PRK14594 51 VEDVSLKNNSLLLKFEEFNAPEPIKP-LIGFE 81 (166)
T ss_pred EEEEEEECCEEEEEEcCCCCHHHHHH-hcCCE
Confidence 44445567888999998877777754 45433
No 334
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=20.33 E-value=4.1e+02 Score=20.45 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=19.7
Q ss_pred EEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecCC
Q 030155 46 FVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 81 (182)
Q Consensus 46 fV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 81 (182)
.+++-+.|.+..|++.|...-+. ..++|.++...+
T Consensus 132 V~naitlE~~~~a~~~~~~~g~~-ei~~v~is~~~~ 166 (187)
T COG2242 132 VANAITLETLAKALEALEQLGGR-EIVQVQISRGKP 166 (187)
T ss_pred EEEeecHHHHHHHHHHHHHcCCc-eEEEEEeeccee
Confidence 34455556666665555544444 667777776443
No 335
>PHA03048 IMV membrane protein; Provisional
Probab=20.26 E-value=6.5 Score=26.37 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=15.3
Q ss_pred CCEEEEEeCCHHHHHHHHHhcCC
Q 030155 42 RNFAFVQFETQEEATKALESTDR 64 (182)
Q Consensus 42 ~g~afV~f~~~~~a~~Ai~~l~g 64 (182)
.-||||+|........++.+|.+
T Consensus 26 CIfAfidfsK~k~~~~~wRalsi 48 (93)
T PHA03048 26 CIFAFVDFSKNKATVTVWRALSG 48 (93)
T ss_pred HHHhhhhhhcCCCcchhHHHHHH
Confidence 45899999876555555555543
No 336
>PF05727 UPF0228: Uncharacterised protein family (UPF0228); InterPro: IPR008887 This small family of proteins is currently restricted to Methanosarcina species. Members of this family are about 200 residues in length, except for Q8TMK1 from SWISSPROT that has two copies of this region. Although the function of this region is unknown the pattern of conservation suggests that this may be an enzyme, including multiple conserved aspartate and glutamate residues. The most conserved motif in these proteins is NEL/MEXNE/D, where X can be any amino acid, and is found at the C terminus of these proteins.
Probab=20.21 E-value=1.8e+02 Score=20.89 Aligned_cols=53 Identities=11% Similarity=0.351 Sum_probs=27.3
Q ss_pred CCHHHHHHhhccCC-ceEEEEEeCCEEEEEeCCHHH-----HHHHHHhcCCCccCCcEEEEEE
Q 030155 20 TRERDIKRHFEPYG-NVLHVRIRRNFAFVQFETQEE-----ATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 20 ~~e~~L~~~F~~~G-~i~~~~i~~g~afV~f~~~~~-----a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
+..+.+.+++.++- +|+.. -.|+|.|.+... -..|++.-|-.+.....|.|.+
T Consensus 64 i~d~~FL~iL~K~nLqvKKf----VwCyI~f~dgs~nywIpe~DAirIKnELE~NE~il~V~~ 122 (127)
T PF05727_consen 64 IEDKNFLEILEKYNLQVKKF----VWCYIRFGDGSKNYWIPEKDAIRIKNELEMNEKILIVYL 122 (127)
T ss_pred cCchhHHHHHHhcCcceeEE----EEEEEEcCCCCcccccchHHHHHHHHHHhcCCcEEEEEe
Confidence 44456777777775 33332 247777764332 1234433333444455666655
No 337
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=20.21 E-value=1.3e+02 Score=25.40 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=33.0
Q ss_pred CCCEEEEccCC-CC--CCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHH
Q 030155 6 PTKTLFVINFD-PI--RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKAL 59 (182)
Q Consensus 6 ~~~~l~V~nL~-p~--~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai 59 (182)
....|||.|-| |. -++.++|+.+...... .+.|.-.-||++|.. +++...+
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~--~~~vVvDEAY~eF~~-~~~~~l~ 198 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPE--GGLVVIDEAYIEFSP-ESSLELL 198 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEeCchhhcCC-chhhhhc
Confidence 46789998753 32 2567999999987655 222223569999998 4444433
No 338
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=20.20 E-value=1.5e+02 Score=24.92 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=17.9
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhc
Q 030155 7 TKTLFVINFDPIRTRERDIKRHFE 30 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~ 30 (182)
-.+||||+=+|.-++.++|.++|.
T Consensus 57 ~~tiy~GGGTPs~L~~~~l~~ll~ 80 (353)
T PRK05904 57 FKTIYLGGGTPNCLNDQLLDILLS 80 (353)
T ss_pred eEEEEECCCccccCCHHHHHHHHH
Confidence 468999887677778887777764
No 339
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.08 E-value=2.5e+02 Score=17.82 Aligned_cols=44 Identities=25% Similarity=0.356 Sum_probs=27.1
Q ss_pred CHHHHHHhhccCC-ceEEEEE-e---C---CEEEEEeC-CHHHHHHHHHhcCC
Q 030155 21 RERDIKRHFEPYG-NVLHVRI-R---R---NFAFVQFE-TQEEATKALESTDR 64 (182)
Q Consensus 21 ~e~~L~~~F~~~G-~i~~~~i-~---~---g~afV~f~-~~~~a~~Ai~~l~g 64 (182)
.-.++.++|+.+| .+..|.- + . -.-||+++ ..+..++|++.|..
T Consensus 13 ~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~ 65 (74)
T cd04929 13 GLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR 65 (74)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence 4567888899887 5666543 1 1 13456666 33466677776654
No 340
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=20.04 E-value=1.4e+02 Score=28.00 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=26.7
Q ss_pred CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030155 42 RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 42 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
.+.|||+|.+...|+.|.+..+.... ....+++|..+
T Consensus 305 ~~~aFVtf~sr~~A~~~aq~~~~~~~--~~w~~~~APeP 341 (728)
T KOG1134|consen 305 LPAAFVTFKSRYGAAVAAQTQQSLNP--TKWLTEFAPEP 341 (728)
T ss_pred CceEEEEEEeeHHHHHHHHhhhcCCC--CceEEEecCCc
Confidence 47899999999999999886444333 34666776544
No 341
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=20.03 E-value=1.6e+02 Score=19.67 Aligned_cols=44 Identities=16% Similarity=0.244 Sum_probs=23.1
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccC----CceEEEEE---eCCEEEEEeCC
Q 030155 6 PTKTLFVINFDPIRTRERDIKRHFEPY----GNVLHVRI---RRNFAFVQFET 51 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~----G~i~~~~i---~~g~afV~f~~ 51 (182)
...-||||++ ...+- +.|.+...+. |.+.-+.- ..||+|-++..
T Consensus 24 v~~GVyVg~~-s~rVR-e~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGV-SASVR-ERIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCC-CHHHH-HHHHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 3456999999 44443 3333333332 44333322 25777766653
Done!