BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030161
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IEM|A Chain A, Solution Structure Of An Oxidized Form (Cys51-Cys198) Of
E. Coli Methionine Sulfoxide Reductase A (Msra)
Length = 211
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 84/146 (57%), Gaps = 8/146 (5%)
Query: 43 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYD 98
++ A+FA+G FW E +F L GV T GY GG NP +R + GD HAE+V++ YD
Sbjct: 42 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVSSGDTGHAEAVRIVYD 101
Query: 99 PRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSK 158
P VI++ QLL+VFW +HD Q QG D G QYRS I+ E+ A S ER Q
Sbjct: 102 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAML 161
Query: 159 SSI----VTTQIQQLVAFYPAEPEHQ 180
++ +TT+I FY AE +HQ
Sbjct: 162 AADDDRHITTEIANATPFYYAEDDHQ 187
>pdb|1FF3|A Chain A, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
pdb|1FF3|B Chain B, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
pdb|1FF3|C Chain C, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
Length = 211
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 84/146 (57%), Gaps = 8/146 (5%)
Query: 43 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYD 98
++ A+FA+G FW E +F L GV T GY GG NP +R + GD HAE+V++ YD
Sbjct: 42 MEIAIFAMGXFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYD 101
Query: 99 PRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSK 158
P VI++ QLL+VFW +HD Q QG D G QYRS I+ E+ A S ER Q
Sbjct: 102 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAML 161
Query: 159 SSI----VTTQIQQLVAFYPAEPEHQ 180
++ +TT+I FY AE +HQ
Sbjct: 162 AADDDRHITTEIANATPFYYAEDDHQ 187
>pdb|2GT3|A Chain A, Solution Structure And Dynamics Of The Reduced Form Of
Methionine Sulfoxide Reductase A From Escherichia Coli,
A 23 Kda Protein
Length = 212
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 84/146 (57%), Gaps = 8/146 (5%)
Query: 43 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYD 98
++ A+FA+G FW E +F L GV T GY GG NP +R + GD HAE+V++ YD
Sbjct: 43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYD 102
Query: 99 PRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSK 158
P VI++ QLL+VFW +HD Q QG D G QYRS I+ E+ A S ER Q
Sbjct: 103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAML 162
Query: 159 SSI----VTTQIQQLVAFYPAEPEHQ 180
++ +TT+I FY AE +HQ
Sbjct: 163 AADDDRHITTEIANATPFYYAEDDHQ 188
>pdb|2L90|A Chain A, Solution Structure Of Murine Myristoylated Msra
Length = 212
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 77/144 (53%), Gaps = 7/144 (4%)
Query: 44 KAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDP 99
+ AVF +G FW +E F L GV T VG+AGG NP ++ + HAE V+V Y P
Sbjct: 43 QMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGHTRNPTYKEVCSEKTGHAEVVRVVYRP 102
Query: 100 RVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQM---K 156
I+F +LL+VFW +HD Q QG D G QYRS ++ + A SKE Q K
Sbjct: 103 EHISFEELLKVFWENHDPTQGMRQGNDFGTQYRSAVYPTSAVQMEAALRSKEEYQKVLSK 162
Query: 157 SKSSIVTTQIQQLVAFYPAEPEHQ 180
+TT I++ FY AE HQ
Sbjct: 163 HNFGPITTDIREGQVFYYAEDYHQ 186
>pdb|1FVA|A Chain A, Crystal Structure Of Bovine Methionine Sulfoxide Reductase
pdb|1FVA|B Chain B, Crystal Structure Of Bovine Methionine Sulfoxide Reductase
Length = 217
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 79/144 (54%), Gaps = 7/144 (4%)
Query: 44 KAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDP 99
+ AVF +G FW +E F L GV T VG+AGG NP ++ + HAE V+V + P
Sbjct: 52 QMAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQP 111
Query: 100 RVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQM---K 156
I+F +LL+VFW +HD Q QG D G+QYRS I+ E A SKE Q +
Sbjct: 112 EHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQKVLSE 171
Query: 157 SKSSIVTTQIQQLVAFYPAEPEHQ 180
++TT I++ FY AE HQ
Sbjct: 172 HGFGLITTDIREGQTFYYAEDYHQ 195
>pdb|4GWB|A Chain A, Crystal Structure Of Putative Peptide Methionine Sulfoxide
Reductase From Sinorhizobium Meliloti 1021
Length = 168
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 78/138 (56%), Gaps = 1/138 (0%)
Query: 44 KAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVIN 103
K AV A G FW + + L GV+ T VGY GG N +RN G HAE +++ +DP I+
Sbjct: 3 KRAVLAGGCFWGXQDLIRKLPGVIETRVGYTGGDVPNATYRNHGTHAEGIEIIFDPERIS 62
Query: 104 FRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHS-KEREQMKSKSSIV 162
+R++LE+F+ HD QG D+G YRS I+ E+ R+A + + E V
Sbjct: 63 YRRILELFFQIHDPTTKDRQGNDIGTSYRSAIYYVDDEQKRIAQETIADVEASGLWPGKV 122
Query: 163 TTQIQQLVAFYPAEPEHQ 180
T+++ + F+ AEPEHQ
Sbjct: 123 VTEVEPVRDFWEAEPEHQ 140
>pdb|1FVG|A Chain A, Crystal Structure Of Bovine Peptide Methionine Sulfoxide
Reductase
Length = 199
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 78/144 (54%), Gaps = 7/144 (4%)
Query: 44 KAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDP 99
+ AVF G FW +E F L GV T VG+AGG NP ++ + HAE V+V + P
Sbjct: 44 QXAVFGXGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQP 103
Query: 100 RVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQM---K 156
I+F +LL+VFW +HD Q QG D G+QYRS I+ E A SKE Q +
Sbjct: 104 EHISFEELLKVFWENHDPTQGXRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQKVLSE 163
Query: 157 SKSSIVTTQIQQLVAFYPAEPEHQ 180
++TT I++ FY AE HQ
Sbjct: 164 HGFGLITTDIREGQTFYYAEDYHQ 187
>pdb|2J89|A Chain A, Functional And Structural Aspects Of Poplar Cytosolic And
Plastidial Type A Methionine Sulfoxide Reductases
Length = 261
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 80/155 (51%), Gaps = 6/155 (3%)
Query: 31 VSTSINDELGRPLKA-AVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLG-- 87
+ +D+L P + A F G FW E F + GV +T VGY G NP + ++
Sbjct: 81 IPQGPDDDLPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYTQGLLHNPTYEDVXTG 140
Query: 88 --DHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRL 145
+H E V+V+YDP+ +F L++V W HD + QG DVG QYRS I+ E+ +
Sbjct: 141 TTNHNEVVRVQYDPKECSFDTLIDVLWARHDPTTLNRQGNDVGTQYRSGIYYYTPEQEKA 200
Query: 146 AAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQ 180
A S ER+Q IV T+I FY AE HQ
Sbjct: 201 AKESLERQQKLLNRKIV-TEILPAKKFYRAEEYHQ 234
>pdb|1NWA|A Chain A, Structure Of Mycobacterium Tuberculosis Methionine
Sulfoxide Reductase A In Complex With Protein-Bound
Methionine
Length = 203
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 75/138 (54%), Gaps = 1/138 (0%)
Query: 44 KAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVIN 103
+ A+ A G FW + + GVV T VGY+GG+ N +RN G HAE+V++ +DP V +
Sbjct: 26 QKAILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHGTHAEAVEIIFDPTVTD 85
Query: 104 FRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHS-KEREQMKSKSSIV 162
+R LLE F+ HD QG D G YRS IF ++ R+A + + E V
Sbjct: 86 YRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEASGLWPGKV 145
Query: 163 TTQIQQLVAFYPAEPEHQ 180
T++ F+ AEPEHQ
Sbjct: 146 VTEVSPAGDFWEAEPEHQ 163
>pdb|3BQF|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria
Meningitidis Pilb (Complex With A Substrate)
Length = 194
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 72/137 (52%), Gaps = 5/137 (3%)
Query: 48 FALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLG----DHAESVQVEYDPRVIN 103
A GSFW EA F ++GVV GYA G+ NP + ++ HAE+V+V YD ++
Sbjct: 8 LAGGSFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLS 67
Query: 104 FRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVT 163
+L+ F+ D + QG D G QYRS ++ E + A + +REQ K + +V
Sbjct: 68 LDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLV- 126
Query: 164 TQIQQLVAFYPAEPEHQ 180
+ + L FY AE HQ
Sbjct: 127 VENEPLKNFYDAEEYHQ 143
>pdb|3BQG|A Chain A, Structure Of The Central Domain (msra) Of Neisseria
Meningitidis Pilb (sulfenic Acid Form)
Length = 194
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 5/137 (3%)
Query: 48 FALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLG----DHAESVQVEYDPRVIN 103
A G FW EA F ++GVV GYA G+ NP + ++ HAE+V+V YD ++
Sbjct: 8 LAGGXFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLS 67
Query: 104 FRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVT 163
+L+ F+ D + QG D G QYRS ++ E + A + +REQ K + +V
Sbjct: 68 LDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLV- 126
Query: 164 TQIQQLVAFYPAEPEHQ 180
+ + L FY AE HQ
Sbjct: 127 VENEPLKNFYDAEEYHQ 143
>pdb|3BQE|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria
Meningitidis Pilb (Reduced Form)
Length = 194
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 5/137 (3%)
Query: 48 FALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLG----DHAESVQVEYDPRVIN 103
A G FW EA F ++GVV GYA G+ NP + ++ HAE+V+V YD ++
Sbjct: 8 LAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLS 67
Query: 104 FRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVT 163
+L+ F+ D + QG D G QYRS ++ E + A + +REQ K + +V
Sbjct: 68 LDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLV- 126
Query: 164 TQIQQLVAFYPAEPEHQ 180
+ + L FY AE HQ
Sbjct: 127 VENEPLKNFYDAEEYHQ 143
>pdb|3BQH|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria
Meningitidis Pilb (Oxidized Form)
Length = 193
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 5/137 (3%)
Query: 48 FALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLG----DHAESVQVEYDPRVIN 103
A G FW EA F ++GVV GYA G+ NP + ++ HAE+V+V YD ++
Sbjct: 7 LAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLS 66
Query: 104 FRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVT 163
+L+ F+ D + QG D G QYRS ++ E + A + +REQ K + +V
Sbjct: 67 LDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLV- 125
Query: 164 TQIQQLVAFYPAEPEHQ 180
+ + L FY AE HQ
Sbjct: 126 VENEPLKNFYDAEEYHQ 142
>pdb|3PIN|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 183
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 13/150 (8%)
Query: 44 KAAVFALGSFWRSEAVF-GCLNG-VVRTTVGYAGGSKTNPE------FRNLG----DHAE 91
K A GSFW +E ++ LN +V + VGYA G ++ + ++ + D AE
Sbjct: 16 KLITLASGSFWGTEHMYRKYLNDRIVDSKVGYANGEESKKDSPSSVSYKRVSGGDTDFAE 75
Query: 92 SVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKE 151
+QV Y+P+VI R+L + F+ HD QGPD G QYRS +F + + + A KE
Sbjct: 76 VLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKE 135
Query: 152 REQMKSKSSIVTTQIQQLVAFYPAEPEHQV 181
Q K + I T I+ + FY AE HQ+
Sbjct: 136 EWQPKWGNKIATV-IEPIKNFYDAEEYHQL 164
>pdb|3PIL|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Reduced Form
pdb|3PIL|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Reduced Form
Length = 184
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 75/150 (50%), Gaps = 13/150 (8%)
Query: 44 KAAVFALGSFWRSEAVF-GCLNG-VVRTTVGYAGGSKTNPEF-------RNLG---DHAE 91
K A G FW +E ++ LN +V VGYA G ++ + R G D AE
Sbjct: 17 KLITLACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAE 76
Query: 92 SVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKE 151
+QV Y+P+VI R+L + F+ HD QGPD G QYRS +F + + + A KE
Sbjct: 77 VLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKE 136
Query: 152 REQMKSKSSIVTTQIQQLVAFYPAEPEHQV 181
Q K + I T I+ + FY AE HQ+
Sbjct: 137 EWQPKWGNKIATV-IEPIKNFYDAEEYHQL 165
>pdb|3PIM|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Unusual Oxidized Form
pdb|3PIM|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Unusual Oxidized Form
pdb|3PIM|C Chain C, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Unusual Oxidized Form
Length = 187
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 75/150 (50%), Gaps = 13/150 (8%)
Query: 44 KAAVFALGSFWRSEAVF-GCLNG-VVRTTVGYAGGSKTNPEF-------RNLG---DHAE 91
K A G FW +E ++ LN +V VGYA G ++ + R G D AE
Sbjct: 20 KLITLACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAE 79
Query: 92 SVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKE 151
+QV Y+P+VI R+L + F+ HD QGPD G QYRS +F + + + A KE
Sbjct: 80 VLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKE 139
Query: 152 REQMKSKSSIVTTQIQQLVAFYPAEPEHQV 181
Q K + I T I+ + FY AE HQ+
Sbjct: 140 EWQPKWGNKIATV-IEPIKNFYDAEEYHQL 168
>pdb|3E0M|A Chain A, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|B Chain B, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|C Chain C, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|D Chain D, Crystal Structure Of Fusion Protein Of Msra And Msrb
Length = 313
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 5/136 (3%)
Query: 48 FALGSFWRSEAVFGCLNGVVRTTVGYAGG--SKTNPEFRNLGDHAESVQVEYDPRVINFR 105
A G FW E F ++GV+ T+VGYA G TN + DHAE+VQV YD + ++ R
Sbjct: 7 LAGGCFWGLEEYFSRISGVLETSVGYANGQVETTNYQLLKETDHAETVQVIYDEKEVSLR 66
Query: 106 QLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAA-HSKEREQMKSKSSIVTT 164
++L ++ D + QG D G QYR+ I+ +E+ L A ++ +EQ + +
Sbjct: 67 EILLYYFRVIDPLSINQQGNDRGRQYRTGIYYQ--DEADLPAIYTVVQEQERMLGRKIAV 124
Query: 165 QIQQLVAFYPAEPEHQ 180
+++QL + AE HQ
Sbjct: 125 EVEQLRHYILAEDYHQ 140
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 102 INFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEE-SRLAAHSKEREQMKSKSS 160
+NF++LL T+H C + Q + +I FT+GT ++A HS +K+K
Sbjct: 185 LNFKKLLNEASTTHHCVETGSQ------EASAIYFTSGTSGLPKMAEHSYSSLGLKAKMD 238
Query: 161 IVTTQIQ 167
T +Q
Sbjct: 239 AGWTGLQ 245
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 102 INFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEE-SRLAAHSKEREQMKSKSS 160
+NF++LL T+H C + Q + +I FT+GT ++A HS +K+K
Sbjct: 185 LNFKKLLNEASTTHHCVETGSQ------EASAIYFTSGTSGLPKMAEHSYSSLGLKAKMD 238
Query: 161 IVTTQIQ 167
T +Q
Sbjct: 239 AGWTGLQ 245
>pdb|2RFO|A Chain A, Crystral Structure Of The Nucleoporin Nic96
pdb|2RFO|B Chain B, Crystral Structure Of The Nucleoporin Nic96
Length = 651
Score = 27.3 bits (59), Expect = 5.4, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 104 FRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFT-NGTEESRLAAHSKEREQMKSK 158
F + + ++ RQ G D+ N++ SI+ + NGT ++L K E MKSK
Sbjct: 24 FENYARIVFQFNNSRQANGNF-DIANEFISILSSANGTRNAQLLESWKILESMKSK 78
>pdb|2QX5|A Chain A, Structure Of Nucleoporin Nic96
pdb|2QX5|B Chain B, Structure Of Nucleoporin Nic96
Length = 661
Score = 27.3 bits (59), Expect = 5.5, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 104 FRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFT-NGTEESRLAAHSKEREQMKSK 158
F + + ++ RQ G D+ N++ SI+ + NGT ++L K E MKSK
Sbjct: 34 FENYARIVFQFNNSRQANGNF-DIANEFISILSSANGTRNAQLLESWKILESMKSK 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,817,706
Number of Sequences: 62578
Number of extensions: 176368
Number of successful extensions: 366
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 325
Number of HSP's gapped (non-prelim): 21
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)