BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030162
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 209 bits (531), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/183 (56%), Positives = 137/183 (74%), Gaps = 7/183 (3%)
Query: 1 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRG-SVIQPPSARFITFPNGKDDLMN 59
MIKLF +K++++E + ++ KK SA +LR+ + + + P I+F + DDL+N
Sbjct: 3 MIKLFSLKQQKKEEEKGSS-----KKASAAQLRIQKDINELNLPKTCDISFSD-PDDLLN 56
Query: 60 FEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDW 119
F++ I PDEG+Y G FVF+F+V YPH+ PKVKC+T VYHPNIDLEGNV LNILREDW
Sbjct: 57 FKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDW 116
Query: 120 KPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFI 179
KPVL IN+IIYGL +LF +PN EDPLN EAA VL++N +LFE NV+R+M GGY+G T+F
Sbjct: 117 KPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFE 176
Query: 180 RCI 182
RC+
Sbjct: 177 RCL 179
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 195 bits (495), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 94/156 (60%), Positives = 120/156 (76%), Gaps = 2/156 (1%)
Query: 28 SAGELRLHRG-SVIQPPSARFITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIY 86
SA +LR+ + + + P I+F + DDL+NF++ I PDEG+Y G FVF+F+V Y
Sbjct: 5 SAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGY 63
Query: 87 PHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLN 146
PH+ PKVKC+T VYHPNIDLEGNVCLNILREDWKPVL IN+IIYGL +LF +PN EDPLN
Sbjct: 64 PHDPPKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLN 123
Query: 147 HEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 182
EAA VL++N +LFE NV+R+ GGY+G T+F RC+
Sbjct: 124 KEAAEVLQNNRRLFEQNVQRSXRGGYIGSTYFERCL 159
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 149 bits (377), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 111/179 (62%), Gaps = 8/179 (4%)
Query: 1 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRG--SVIQPPSARF--ITFPNGKDD 56
M+KL ++++K+++ EN++ P SA +RL R S+ PP+ IT P+ D
Sbjct: 3 MLKLRQLQKKKQKENENSSSIQP--NLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADR 60
Query: 57 LMN--FEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNI 114
+ EV +RPDEGYY G+ F + +YP E PKV C K++HPNIDL+GNVCLNI
Sbjct: 61 SQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNI 120
Query: 115 LREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYV 173
LREDW P L++ +II GL LF +PN DPLN +AA +L + K F VR M+GG +
Sbjct: 121 LREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGSI 179
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 96.7 bits (239), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 55 DDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLN 113
DD+ ++ +I PD+ Y GG F YP +AP+V TKVYHPNI+ G +CL+
Sbjct: 31 DDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLD 90
Query: 114 ILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
IL++ W P L ++ ++ + L T PN DPL+ E A VLR N K FE R
Sbjct: 91 ILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAR 142
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 68/115 (59%), Gaps = 8/115 (6%)
Query: 43 PSARFITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHP 102
P + FP+ + L F++++ PDEGYY GG F F +V Y PKVKC TK++HP
Sbjct: 31 PCTCKVHFPD-PNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHP 89
Query: 103 NIDLEGNVCLNILRED------WKPVLNINTIIYGLFHLFTQ-PNYEDPLNHEAA 150
NI G +CL++LRE W P + +++GL LFT N++DPLN EAA
Sbjct: 90 NITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAA 144
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 9/121 (7%)
Query: 43 PSARFITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHP 102
P + FP+ + L F++++ PDEGYY GG F F +V Y PKVKC TK++HP
Sbjct: 31 PCTCKVHFPD-PNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHP 89
Query: 103 NIDLEGNVCLNILRED------WKPVLNINTIIYGLFHLFTQ-PNYEDPLNHEAAA-VLR 154
NI G +CL++LRE W P + +++GL LFT N++DPLN EAA LR
Sbjct: 90 NITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLR 149
Query: 155 D 155
D
Sbjct: 150 D 150
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 55 DDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLN 113
DDL +++ +I P + Y GG F + YP + PKV T++YHPNI+ G++CL+
Sbjct: 28 DDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLD 87
Query: 114 ILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
ILR+ W P L I+ ++ + L T PN +DPL E A V + + +E + R
Sbjct: 88 ILRDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAR 139
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 55 DDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLN 113
DDL +++ SI P + Y GG F + YP + PK+ TK+YHPNI+ GN+CL+
Sbjct: 29 DDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLD 88
Query: 114 ILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRR 166
IL++ W P L ++ ++ + L T N +DPL E A + + + +E+ R
Sbjct: 89 ILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATARE 141
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 4/136 (2%)
Query: 24 VKKQSAGELRLHR--GSVIQPPSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTF 80
V + S R+H+ + + P A+ P G DD+ +++ +I P++ Y GG F T
Sbjct: 14 VPRGSMALKRIHKELNDLARDPPAQCSAGPVG-DDMFHWQATIMGPNDSPYQGGVFFLTI 72
Query: 81 QVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPN 140
YP + PKV T++YHPNI+ G++CL+ILR W P L I+ ++ + L PN
Sbjct: 73 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPN 132
Query: 141 YEDPLNHEAAAVLRDN 156
+DPL E A + + +
Sbjct: 133 PDDPLVPEIARIYKTD 148
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 43 PSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 101
P A+ P G DDL +++ +I P E Y GG F T YP + PKV T++YH
Sbjct: 20 PPAQCSAGPVG-DDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH 78
Query: 102 PNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 156
PNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E A + + +
Sbjct: 79 PNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTD 133
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Query: 33 RLHR--GSVIQPPSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHE 89
R+H+ + + P A+ P G DD+ +++ +I P++ Y GG F T YP +
Sbjct: 10 RIHKELNDLARDPPAQCSAGPVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 68
Query: 90 APKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEA 149
PKV T++YHPNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 69 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 128
Query: 150 AAVLRDN 156
A + + +
Sbjct: 129 ARIYKTD 135
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Query: 33 RLHR--GSVIQPPSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHE 89
R+H+ + + P A+ P G DD+ +++ +I P++ Y GG F T YP +
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 90 APKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEA 149
PKV T++YHPNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 150 AAVLRDN 156
A + + +
Sbjct: 126 ARIYKTD 132
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 55 DDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLN 113
DD+ +++ +I P++ Y GG F YP + PKV TK+YHPNI+ +G +CL+
Sbjct: 48 DDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLD 107
Query: 114 ILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRR 166
IL++ W P L I+ ++ + L T PN +DPL E A + + + ++ R
Sbjct: 108 ILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTARE 160
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Query: 33 RLHR--GSVIQPPSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHE 89
R+H+ + + P A+ P G DD+ +++ +I P++ Y GG F T YP +
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 90 APKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEA 149
PKV T++YHPNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 150 AAVLRDN 156
A + + +
Sbjct: 126 ARIYKTD 132
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Query: 33 RLHR--GSVIQPPSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHE 89
R+H+ + + P A+ P G DD+ +++ +I P++ Y GG F T YP +
Sbjct: 5 RIHKELNDLARDPPAQCSAGPVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 90 APKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEA 149
PKV T++YHPNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 150 AAVLRDN 156
A + + +
Sbjct: 124 ARIYKTD 130
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 43 PSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 101
P A P G DDL +++ +I P + Y GG F T YP + PK+ TK+YH
Sbjct: 35 PPAHCSAGPVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYH 93
Query: 102 PNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFE 161
PNI+ G++CL+ILR W P L ++ ++ + L PN +DPL + A + + + + +
Sbjct: 94 PNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYN 153
Query: 162 SNVR 165
+ R
Sbjct: 154 RHAR 157
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 2/125 (1%)
Query: 43 PSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 101
P A P G DDL +++ +I P + Y GG F T YP + PK+ TK+YH
Sbjct: 19 PPAHCSAGPVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYH 77
Query: 102 PNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFE 161
PNI+ G++CL+ILR W P L ++ ++ + L PN +DPL + A + + + + +
Sbjct: 78 PNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYN 137
Query: 162 SNVRR 166
+ R
Sbjct: 138 RHARE 142
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 2/125 (1%)
Query: 43 PSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 101
P A P G DDL +++ +I P + Y GG F T YP + PK+ TK+YH
Sbjct: 23 PPAHCSAGPVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYH 81
Query: 102 PNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFE 161
PNI+ G++CL+ILR W P L ++ ++ + L PN +DPL + A + + + + +
Sbjct: 82 PNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYN 141
Query: 162 SNVRR 166
+ R
Sbjct: 142 RHARE 146
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 86.3 bits (212), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Query: 33 RLHR--GSVIQPPSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHE 89
R+H+ + + P A+ P G DD+ +++ +I P++ Y GG F T YP +
Sbjct: 15 RIHKELNDLARDPPAQCSAGPVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 73
Query: 90 APKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEA 149
PKV T++YHPNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 74 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 133
Query: 150 AAVLRDN 156
A + + +
Sbjct: 134 ARIYQTD 140
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Query: 33 RLHR--GSVIQPPSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHE 89
R+H+ + + P A+ P G DD+ +++ +I P++ Y GG F T YP +
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 90 APKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEA 149
PKV T++YHPNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 150 AAVLRDN 156
A + + +
Sbjct: 126 ARIYKTD 132
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 43 PSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 101
P A+ P G DDL +++ +I P + Y GG F T YP + PKV TK+YH
Sbjct: 22 PPAQCSAGPVG-DDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYH 80
Query: 102 PNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 156
PNI+ G++CL+ILR W P L ++ ++ + L PN +DPL + A + + +
Sbjct: 81 PNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAHIYKSD 135
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 43 PSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 101
P A+ P G DD+ +++ +I P++ Y GG F T YP + PKV T++YH
Sbjct: 19 PPAQCSAGPVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH 77
Query: 102 PNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 156
PNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E A + + +
Sbjct: 78 PNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTD 132
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 43 PSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 101
P A+ P G DD+ +++ +I P++ Y GG F T YP + PKV T++YH
Sbjct: 27 PPAQCSAGPVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH 85
Query: 102 PNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 156
PNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E A + + +
Sbjct: 86 PNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTD 140
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 43 PSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 101
P A+ P G DD+ +++ +I P++ Y GG F T YP + PKV T++YH
Sbjct: 25 PPAQCSAGPVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH 83
Query: 102 PNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 156
PNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E A + + +
Sbjct: 84 PNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTD 138
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 43 PSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 101
P A+ P G DD+ +++ +I P++ Y GG F T YP + PKV T++YH
Sbjct: 16 PPAQCSAGPVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH 74
Query: 102 PNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 156
PNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E A + + +
Sbjct: 75 PNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTD 129
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Query: 48 ITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDL 106
IT D+L F+V+I P++ Y G F + YP EAPKV+ TK+YHPNID
Sbjct: 25 ITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR 84
Query: 107 EGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAA 150
G +CL++L+ +W P L I T++ + L PN DPL ++ A
Sbjct: 85 LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVA 128
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Query: 48 ITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDL 106
IT D+L F+V+I P++ Y G F + YP EAPKV+ TK+YHPNID
Sbjct: 23 ITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR 82
Query: 107 EGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAA 150
G +CL++L+ +W P L I T++ + L PN DPL ++ A
Sbjct: 83 LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVA 126
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Query: 33 RLHR--GSVIQPPSARFITFPNGKDDLMNFEVS-IRPDEGYYVGGTFVFTFQVSPIYPHE 89
R+H+ + + P A+ P G DD+ +++ + + P++ Y GG F T YP +
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVG-DDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 90 APKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEA 149
PKV T++YHPNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 150 AAVLRDN 156
A + + +
Sbjct: 126 ARIYKTD 132
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 4/127 (3%)
Query: 33 RLHR--GSVIQPPSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHE 89
R+H+ + + P A+ P G DD+ +++ +I P++ Y GG F T YP +
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 90 APKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEA 149
PKV T++YHPNI+ G++CL+ LR W P L I+ ++ + L PN +DPL E
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 150 AAVLRDN 156
A + + +
Sbjct: 126 ARIYKTD 132
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Query: 24 VKKQSAGELRLHR--GSVIQPPSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTF 80
V + S R+H+ + + P A+ P G DD+ +++ +I P++ Y GG F T
Sbjct: 14 VPRGSMALKRIHKELNDLARDPPAQCSAGPVG-DDMFHWQATIMGPNDSPYQGGVFFLTI 72
Query: 81 QVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPN 140
YP + PKV T++YHPNI+ G++ L+ILR W P L I+ ++ + L PN
Sbjct: 73 HFPTDYPFKPPKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLLCDPN 132
Query: 141 YEDPLNHEAAAVLRDN 156
+DPL E A + + +
Sbjct: 133 PDDPLVPEIARIYKTD 148
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 29 AGELRLHR-----GSVIQPPSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQV 82
AG + L R + + P A+ P G DD+ +++ +I P++ Y GG F T
Sbjct: 1 AGSMALKRIHKELNDLARDPPAQCSAGPVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHF 59
Query: 83 SPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYE 142
YP + PKV T++YHPNI+ G++ L+ILR W P L I+ ++ + L PN +
Sbjct: 60 PTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPD 119
Query: 143 DPLNHEAAAVLRDN 156
DPL E A + + +
Sbjct: 120 DPLVPEIARIYKTD 133
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%)
Query: 66 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNI 125
P + + GGTF + YP APKV+ TK+YHPN+D G +CL+IL++ W P L I
Sbjct: 47 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 106
Query: 126 NTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 156
T++ + L + PN +DPL ++ A + N
Sbjct: 107 RTVLLSIQALLSAPNPDDPLANDVAEQWKTN 137
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%)
Query: 66 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNI 125
P + + GGTF + YP APKV+ TK+YHPN+D G +CL+IL++ W P L I
Sbjct: 44 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 103
Query: 126 NTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 156
T++ + L + PN +DPL ++ A + N
Sbjct: 104 RTVLLSIQALLSAPNPDDPLANDVAEQWKTN 134
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%)
Query: 66 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNI 125
P + + GGTF + YP APKV+ TK+YHPN+D G +CL+IL++ W P L I
Sbjct: 42 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 101
Query: 126 NTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 156
T++ + L + PN +DPL ++ A + N
Sbjct: 102 RTVLLSIQALLSAPNPDDPLANDVAEQWKTN 132
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%)
Query: 66 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNI 125
P + + GGTF + YP APKV+ TK+YHPN+D G +CL+IL++ W P L I
Sbjct: 40 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 99
Query: 126 NTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 156
T++ + L + PN +DPL ++ A + N
Sbjct: 100 RTVLLSIQALLSAPNPDDPLANDVAEQWKTN 130
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 9/147 (6%)
Query: 33 RLHR--GSVIQPPSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHE 89
R+H+ + + P A+ P G DD+ +++ +I P++ Y GG F T YP +
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 90 APKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEA 149
PKV T++YHPNI+ G++ L+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 66 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 150 AAVLRDNPKLF-----ESNVRRAMAGG 171
A + + + + + E + AM G
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYAMGGS 152
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%)
Query: 66 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNI 125
P + + GGTF + YP APKV+ TK+YHPN+D G +CL+IL++ W P L I
Sbjct: 45 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 104
Query: 126 NTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 156
T++ + L + PN +DPL ++ A + N
Sbjct: 105 RTVLLSIQALLSAPNPDDPLANDVAEQWKTN 135
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 4/127 (3%)
Query: 33 RLHR--GSVIQPPSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHE 89
R+H+ + + P A+ P G DD+ +++ +I P++ Y GG F T YP +
Sbjct: 4 RIHKELNDLARDPPAQCSAGPVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 90 APKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEA 149
PKV T++YHPNI+ G++ L+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 63 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVPEI 122
Query: 150 AAVLRDN 156
A + + +
Sbjct: 123 ARIYKTD 129
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 8/156 (5%)
Query: 21 KTPVKKQSAGELRLHRG--SVIQPPSARFITFPNGKDDLMNFEVSIRPDEGYYVGGTFVF 78
TP +K RL R + Q P A P + ++ V PD+ + GGTF
Sbjct: 2 STPARK------RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL 55
Query: 79 TFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQ 138
+ Q S YP++ P V+ ++++HPNI +G++CL+IL+ W P+ ++ I+ + L
Sbjct: 56 SLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCD 115
Query: 139 PNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVG 174
PN P N EAA + ++ + + VR + +
Sbjct: 116 PNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA 151
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Query: 48 ITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDL 106
IT D+L F+V+I P++ Y G F + YP EAPKV+ TK+YHPNID
Sbjct: 23 ITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR 82
Query: 107 EGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAA 150
G + L++L+ +W P L I T++ + L PN DPL ++ A
Sbjct: 83 LGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVA 126
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 43 PSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 101
P A+ P G DD+ +++ +I P++ Y GG F T YP + PKV T++YH
Sbjct: 17 PPAQCSAGPVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH 75
Query: 102 PNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 156
PNI+ G++ L+ILR W P L I+ ++ + L PN +DPL E A + + +
Sbjct: 76 PNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTD 130
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 55 DDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLN 113
DDL +++ +I P + Y GG F T YP + PK+ TK+YHPNI+ G++ L+
Sbjct: 34 DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSIKLD 93
Query: 114 ILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
ILR W P L ++ ++ + L PN +DPL + A + + + + + + R
Sbjct: 94 ILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAR 145
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 51 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 109
P+G +LMN+E +I +G + GG F YP PK K + ++HPN+ G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGT 94
Query: 110 VCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
VCL+IL E DW+P + I I+ G+ L +PN +DP EA + N +E VR
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 51 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 109
P+G +LMN+E +I +G + GG F YP PK K + ++HPN+ G
Sbjct: 33 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 92
Query: 110 VCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
VCL+IL E DW+P + I I+ G+ L +PN +DP EA + N +E VR
Sbjct: 93 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 150
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 51 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 109
P+G +LMN+E +I +G + GG F YP PK K + ++HPN+ G
Sbjct: 34 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 93
Query: 110 VCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
VCL+IL E DW+P + I I+ G+ L +PN +DP EA + N +E VR
Sbjct: 94 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 151
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 51 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 109
P+G +LMN+E +I +G + GG F YP PK K + ++HPN+ G
Sbjct: 37 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 96
Query: 110 VCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
VCL+IL E DW+P + I I+ G+ L +PN +DP EA + N +E VR
Sbjct: 97 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 154
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 51 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 109
P+G +LMN+E +I +G + GG F YP PK K + ++HPN+ G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 110 VCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
VCL+IL E DW+P + I I+ G+ L +PN +DP EA + N +E VR
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 51 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 109
P+G +LMN+E +I +G + GG F YP PK K + ++HPN+ G
Sbjct: 32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 110 VCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
VCL+IL E DW+P + I I+ G+ L +PN +DP EA + N +E VR
Sbjct: 92 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 51 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 109
P+G +LMN+E +I +G + GG F YP PK K + ++HPN+ G
Sbjct: 34 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 93
Query: 110 VCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
VCL+IL E DW+P + I I+ G+ L +PN +DP EA + N +E VR
Sbjct: 94 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 151
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%)
Query: 66 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNI 125
PD Y GGT+ + YP E PKV+ TK+YHPNID G +CL+IL++ W P L I
Sbjct: 40 PDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQI 99
Query: 126 NTIIYGLFHLFTQPNYEDPLNHEAA 150
T++ + L + P +DPL+ + A
Sbjct: 100 RTVLLSIQALLSSPEPDDPLDSKVA 124
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 33 RLHR--GSVIQPPSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHE 89
R+H+ + + P A+ P G DD+ +++ +I P++ Y GG F T YP +
Sbjct: 5 RIHKELNDLARDPPAQCRAGPVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 90 APKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEA 149
PKV T++YHP I+ G++ L+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 64 PPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 150 AAVLRDN 156
A + + +
Sbjct: 124 ARIYKTD 130
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%)
Query: 66 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNI 125
PD Y GGT+ + YP E PKV+ TK+YHPNID G +CL+IL++ W P L I
Sbjct: 40 PDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQI 99
Query: 126 NTIIYGLFHLFTQPNYEDPLNHEAA 150
T++ + L + P +DPL+ + A
Sbjct: 100 RTVLLSIQALLSSPEPDDPLDSKVA 124
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 48 ITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDL 106
IT D+L F+V+I P++ Y G F + YP EAPKV+ TK+YHP ID
Sbjct: 23 ITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDR 82
Query: 107 EGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAA 150
G + L++L+ +W P L I T++ + L PN DPL ++ A
Sbjct: 83 LGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVA 126
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 51 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 109
P+G +LMN+E +I +G + GG F YP PK K + ++HP + G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGT 94
Query: 110 VCLNILRED--WKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
VCL+IL ED W+P + I I+ G+ L +PN +DP EA + N +E VR
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 14/157 (8%)
Query: 26 KQSAGELRLHRGSVIQPPSARFITFPNGKDDLMNFEV-SIRPDEGYYVGGTFVFTFQVSP 84
+QS+ L+ + + P F +D+ +EV I P + Y GG F
Sbjct: 2 EQSSLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPR 61
Query: 85 IYPHEAPKVKCKTKVYHPNIDLEGNVCLNIL-------------REDWKPVLNINTIIYG 131
YP + PK+K ++++HPNID EGNVC++IL E W PV + TI+
Sbjct: 62 DYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLS 121
Query: 132 LFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAM 168
+ + T PN+E P N +AA + R+N F+ V + +
Sbjct: 122 VISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCV 158
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 51 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 109
P+G +LMN+E +I +G + GG F YP PK K + ++HPN+ G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 110 VCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
VCL+IL E DW+P + I I+ G+ L +PN + P EA + N +E VR
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 51 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 109
P+G +LMN+E +I +G + GG F YP PK K + ++HPN+ G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 110 VCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
VCL+IL E DW+P + I I+ G+ L +PN + P EA + N +E VR
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 54 KDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCL 112
+D+++ +E I P E + GTF + + + YP++ P VK +K++HPN+ +G++CL
Sbjct: 33 EDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICL 92
Query: 113 NILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGY 172
+IL+ W P ++ I+ + L +PN P N AA + ++N + +E V++ + +
Sbjct: 93 DILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQSW 152
Query: 173 V 173
+
Sbjct: 153 L 153
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 54 KDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCL 112
+D+++ +E I P E + GTF + + + YP++ P VK +K++HPN+ +G++CL
Sbjct: 30 EDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICL 89
Query: 113 NILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGY 172
+IL+ W P ++ I+ + L +PN P N AA + ++N + +E V++ + +
Sbjct: 90 DILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQSW 149
Query: 173 V 173
+
Sbjct: 150 L 150
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 51 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 109
P+G +LMN+E +I +G + GG F YP PK K + ++HPN+ G
Sbjct: 32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 110 VCLNILRED--WKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
V L+IL ED W+P + I I+ G+ L +PN +DP EA + N +E VR
Sbjct: 92 VXLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVR 149
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 51 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 109
P+G +LMN+E +I +G + GG F YP PK K + ++HPN+ G
Sbjct: 32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 110 VCLNILRED--WKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
V L+IL ED W+P + I I+ G+ L +PN +DP EA + N +E VR
Sbjct: 92 VSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 6/128 (4%)
Query: 24 VKKQSAGELRLHRGSVIQPPSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQV 82
V K+ ELR +++ FP+G D+L + ++ P + Y + T +
Sbjct: 10 VSKRLQQELR----TLLMSGDPGITAFPDG-DNLFKWVATLDGPKDTVYESLKYKLTLEF 64
Query: 83 SPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYE 142
YP++ P VK T +HPN+D GN+CL+IL+E+W ++ TI+ L L +PN
Sbjct: 65 PSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNA 124
Query: 143 DPLNHEAA 150
PLN +AA
Sbjct: 125 SPLNAQAA 132
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 50 FPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEG 108
FPN ++DL + +V+I EG Y GG F + +P PK TK++HPN+ G
Sbjct: 36 FPN-EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANG 94
Query: 109 NVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
+C+N+L+ DW L I ++ + L PN E LN EA +L +N + + + R
Sbjct: 95 EICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARAR 151
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 2/137 (1%)
Query: 10 KQRENAENANGKTPVKKQSAGELRLHRGSVIQPPSARFITFPNGKDDLMNFEVSIR-PDE 68
K++E+ + + + + SA ++ + P P G D++ + +I P
Sbjct: 31 KKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKG-DNIYEWRSTILGPPG 89
Query: 69 GYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTI 128
Y GG F +P YP + PKV +T++YH NI+ +G +CL+IL+++W P L I+ +
Sbjct: 90 SVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKV 149
Query: 129 IYGLFHLFTQPNYEDPL 145
+ + L T N DPL
Sbjct: 150 LLSICSLLTDCNPADPL 166
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 66 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLE-GNVCLNILREDWKPVLN 124
P+ Y GG F + YP+ PK+K TK++HPNI + G +CL++L+ +W P L
Sbjct: 62 PEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALT 121
Query: 125 INTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLF 160
I T + + L + P +DP + E A + ++N LF
Sbjct: 122 IRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALF 157
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 53 GKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVC 111
++++M + I EG + GTF + S YP++ P V+ +K++HPN+ +G++C
Sbjct: 29 SENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSIC 88
Query: 112 LNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNV 164
L+IL+ W P ++++I+ + L +PN P N +AA + ++N + +E V
Sbjct: 89 LDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 77/153 (50%), Gaps = 9/153 (5%)
Query: 12 RENAENANG--KTPVKKQSAGELRLHRGSVIQPPSARFITFPNGKDDLMNFEVSIRPDEG 69
R+ AE + G + PV K+ EL +++ FP D+L + +I G
Sbjct: 17 RKGAEPSGGAARGPVGKRLQQELM----TLMMSGDKGISAFPE-SDNLFKWVGTIHGAAG 71
Query: 70 -YYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTI 128
Y + + + YP+ AP VK T YHPN+D +GN+ L+IL+E W + ++ TI
Sbjct: 72 TVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTI 131
Query: 129 IYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFE 161
+ + L +PN + PLN AA + + NP F+
Sbjct: 132 LLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFK 163
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 42 PPSARFITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 101
PP R ++ + +++ + + PD+ Y F P YP + P +K TK+YH
Sbjct: 21 PPYLRNLS--SDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYH 78
Query: 102 PNIDLEGNVCLNIL-REDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLF 160
PN+D G +CL I+ E+WKP ++ L L +PN +PL + A +L NP+LF
Sbjct: 79 PNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELF 138
Query: 161 ESNV 164
N
Sbjct: 139 RKNA 142
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 28 SAGELRLHRGSVIQPPSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIY 86
SA ++ + P P G D++ + +I P Y GG F SP Y
Sbjct: 4 SAKRIQKELAEITLDPPPNCSAGPKG-DNIYEWRSTILGPPGSVYEGGVFFLDITFSPDY 62
Query: 87 PHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPL 145
P + PKV +T++YH NI+ +G +CL+IL+++W P L I+ ++ + L T N DPL
Sbjct: 63 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 121
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 71 YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLE-GNVCLNILREDWKPVLNINTII 129
Y GG F + P YP+ PK+K TK++HPNI + G +CL+IL+ +W P L I T +
Sbjct: 89 YEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTAL 148
Query: 130 YGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
+ + P DP + E A ++ +N LF +
Sbjct: 149 LSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAK 184
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 42 PPSARFITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 101
PP R ++ + +++ + + PD+ Y F P YP + P +K TK+YH
Sbjct: 18 PPYLRNLS--SDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYH 75
Query: 102 PNIDLEGNVCLNIL-REDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLF 160
PN+D G +CL I+ E+WKP ++ L L +PN +PL + A +L NP+LF
Sbjct: 76 PNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELF 135
Query: 161 ESNV 164
N
Sbjct: 136 RKNA 139
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%)
Query: 64 IRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVL 123
I P + Y GTF + YP++ P VK ++++HPN+ G +CL+IL+ W P
Sbjct: 41 IGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTY 100
Query: 124 NINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGY 172
++ +I+ + LF PN P N EAA + +D+ + V+ + +
Sbjct: 101 DVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 10/147 (6%)
Query: 27 QSAGELR--LHRGSVIQPPSARFITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVS 83
Q A L+ LH + PP IT KD + + I Y G F +
Sbjct: 4 QRASRLKRELHMLATEPPPG---ITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIP 60
Query: 84 PIYPHEAPKVKCKTKVYHPNIDLEGNVCLNIL----REDWKPVLNINTIIYGLFHLFTQP 139
YP E P+++ T +YHPNID G +CL++L + W+P LNI T++ + L ++P
Sbjct: 61 ERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEP 120
Query: 140 NYEDPLNHEAAAVLRDNPKLFESNVRR 166
N +DPL + ++ + N F N R+
Sbjct: 121 NPDDPLMADISSEFKYNKPAFLKNARQ 147
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 56 DLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNIL 115
+L+ ++ I PD Y G F YP + PK+ KTK+YHPNID +G VCL ++
Sbjct: 33 NLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVI 92
Query: 116 R-EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNV 164
E+WKP + +I L L P E PL + A + K F N
Sbjct: 93 SAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNA 142
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 52 NGKDDLMNFEVSI--RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 109
+G DLMN++V I +P + GG + T YP PK + ++HPN+ G
Sbjct: 39 DGGLDLMNWKVGIPGKPKTSW-EGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGT 97
Query: 110 VCLNILRED--WKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
VCL+IL E+ WKP + I I+ G+ L PN P EA + + + +E VR
Sbjct: 98 VCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVR 155
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 56 DLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNIL 115
+L+ ++ I PD Y G F YP + PK+ KTK+YHPNID +G VCL ++
Sbjct: 31 NLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVI 90
Query: 116 R-EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNV 164
E+WKP + +I L L P E PL + A + K F N
Sbjct: 91 SAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNA 140
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 71 YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNI-DLEGNVCLNILREDWKPVLNINTII 129
Y GG FV +V YP + PK++ TKVYHPNI + G +CL+ILR W PV+ + + +
Sbjct: 47 YEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSAL 106
Query: 130 YGLFHLFTQPNYEDPLNHEAAA-VLRD 155
L L P DP + E A LRD
Sbjct: 107 ISLQALLQSPEPNDPQDAEVAQHYLRD 133
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 45 ARFITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPN 103
A+ + +G DL +E I EG + GG + T + YP + PKVK YHPN
Sbjct: 28 AKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPN 87
Query: 104 IDLEGNVCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFE 161
+ G +CL+IL E DW+P + + I+ G+ L PN P A N ++
Sbjct: 88 VYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYD 147
Query: 162 SNV 164
V
Sbjct: 148 KKV 150
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 45 ARFITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPN 103
A+ + +G DL +E I EG + GG + T + YP + PKVK YHPN
Sbjct: 26 AKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPN 85
Query: 104 IDLEGNVCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFE 161
+ G +CL+IL E DW+P + + I+ G+ L PN P A N ++
Sbjct: 86 VYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYD 145
Query: 162 SNV 164
V
Sbjct: 146 KKV 148
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 71 YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNI-DLEGNVCLNILREDWKPVLNINTII 129
Y GG FV +V YP + PK++ TKVYHPNI + G +CL+IL+ W PV+ + + +
Sbjct: 46 YEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSAL 105
Query: 130 YGLFHLFTQPNYEDPLNHEAAA-VLRD 155
L L P DP + E A LRD
Sbjct: 106 ISLQALLQSPEPNDPQDAEVAQHYLRD 132
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 56 DLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNI 114
DL N+EV+I P YY GG F + YP+ P + TK++HPNI G+VC++I
Sbjct: 36 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 95
Query: 115 LR-------------EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 154
L E W P N+ TI+ + L +PN P N +A+ + R
Sbjct: 96 LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYR 148
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 56 DLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNI 114
DL N+EV+I P YY GG F + YP+ P + TK++HPNI G+VC++I
Sbjct: 33 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 92
Query: 115 LR-------------EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 154
L E W P N+ TI+ + L +PN P N +A+ + R
Sbjct: 93 LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYR 145
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 14/116 (12%)
Query: 55 DDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLN 113
+DL +EV I P + Y GG F YP PK+K T+++HPN+D G+VC++
Sbjct: 45 NDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCIS 104
Query: 114 IL-------------REDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 156
IL E W P+ + TI+ + + PN + P N +AA R++
Sbjct: 105 ILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWRED 160
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 59 NFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID-LEGNVCLNILR 116
+F+V P+ Y GG + + YP +P + K+ HPN+D G+VCL+++
Sbjct: 30 DFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVIN 89
Query: 117 EDWKPVLN-INTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRR 166
+ W P+ + +N L L T PN DPLN +AA++L + ++E V+
Sbjct: 90 QTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKE 140
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 66 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID-LEGNVCLNILREDWKPVLN 124
P + Y GG + ++ YP PKV+ TK++HPNI + G +CL+IL++ W +
Sbjct: 63 PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMT 122
Query: 125 INTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
+ T++ L L +DP + A + NP++F+ R
Sbjct: 123 LRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 163
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 66 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID-LEGNVCLNILREDWKPVLN 124
P + Y GG + ++ YP PKV+ TK++HPNI + G +CL+IL++ W +
Sbjct: 50 PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMT 109
Query: 125 INTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
+ T++ L L +DP + A + NP++F+ R
Sbjct: 110 LRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 150
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 66 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID-LEGNVCLNILREDWKPVLN 124
P + Y GG + ++ YP PKV+ TK++HPNI + G +CL+IL++ W +
Sbjct: 99 PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMT 158
Query: 125 INTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
+ T++ L L +DP + A + NP++F+ R
Sbjct: 159 LRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 199
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 66 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID-LEGNVCLNILREDWKPVLN 124
P + Y GG + ++ YP PKV+ TK++HPNI + G +CL+IL++ W +
Sbjct: 47 PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMT 106
Query: 125 INTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
+ T++ L L +DP + A + NP++F+ R
Sbjct: 107 LRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 147
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 66 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID-LEGNVCLNILREDWKPVLN 124
P + Y GG + ++ YP PKV+ TK++HPNI + G +CL+IL++ W +
Sbjct: 48 PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMT 107
Query: 125 INTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
+ T++ L L +DP + A + NP++F+ R
Sbjct: 108 LRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 148
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 54 KDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID-LEGNVC 111
D + F V + EG Y GT++ Q+ YP ++P + ++ HPN+D G+VC
Sbjct: 34 SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVC 93
Query: 112 LNILREDWKPVLNINTII-YGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMA 169
L+++ + W P+ + I L L PN DPLN +AA +L + F++ +R ++
Sbjct: 94 LDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVS 152
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 71 YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID-LEGNVCLNILREDWKPVLNINTII 129
Y GG + + YP ++P + K++HPNID G VCL+++ + W + ++ I
Sbjct: 65 YEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIF 124
Query: 130 YGLF-HLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRR 166
L PN DPLN +AAA+ P+ ++ ++
Sbjct: 125 ESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKE 162
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 14/136 (10%)
Query: 47 FITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID 105
+ P ++++ ++ I+ P + Y G F + YP PK+ + HPNI
Sbjct: 24 IVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIY 83
Query: 106 LEGNVCLNIL-------------REDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAV 152
G VC++IL E W PV ++ I+ + + ++PN E N +A +
Sbjct: 84 PNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACIL 143
Query: 153 LRDNPKLFESNVRRAM 168
RDN FE V+ ++
Sbjct: 144 WRDNRPEFERQVKLSI 159
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 35 HRGSVIQPPSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKV 93
++ + PP + P +++ +E I P++ + G F YP PK+
Sbjct: 18 YKQLTLNPPEG-IVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKM 76
Query: 94 KCKTKVYHPNIDLEGNVCLNILR-------------EDWKPVLNINTIIYGLFHLFTQPN 140
+ +++HPNI +G VC++IL E W PV ++ I+ + + +PN
Sbjct: 77 RFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPN 136
Query: 141 YEDPLNHEAAAVLRDNPKLF 160
E N +A+ + RD+ + F
Sbjct: 137 DESGANVDASKMWRDDREQF 156
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 35 HRGSVIQPPSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKV 93
++ + PP + P +++ +E I P++ + G F YP PK+
Sbjct: 12 YKQLTLNPPEG-IVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKM 70
Query: 94 KCKTKVYHPNIDLEGNVCLNILR-------------EDWKPVLNINTIIYGLFHLFTQPN 140
+ +++HPNI +G VC++IL E W PV ++ I+ + + +PN
Sbjct: 71 RFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPN 130
Query: 141 YEDPLNHEAAAVLRDNPKLF 160
E N +A+ + RD+ + F
Sbjct: 131 DESGANVDASKMWRDDREQF 150
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 35 HRGSVIQPPSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKV 93
++ + PP + P +++ +E I P++ + G F YP PK+
Sbjct: 15 YKQLTLNPPEG-IVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKM 73
Query: 94 KCKTKVYHPNIDLEGNVCLNILR-------------EDWKPVLNINTIIYGLFHLFTQPN 140
+ +++HPNI +G VC++IL E W PV ++ I+ + + +PN
Sbjct: 74 RFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPN 133
Query: 141 YEDPLNHEAAAVLRDNPKLF 160
E N +A+ + RD+ + F
Sbjct: 134 DESGANVDASKMWRDDREQF 153
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 35 HRGSVIQPPSARFITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKV 93
++ + PP + P +++ +E I P++ + G F YP PK+
Sbjct: 16 YKQLTLNPPEG-IVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKM 74
Query: 94 KCKTKVYHPNIDLEGNVCLNILR-------------EDWKPVLNINTIIYGLFHLFTQPN 140
+ +++HPNI +G VC++IL E W PV ++ I+ + + +PN
Sbjct: 75 RFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPN 134
Query: 141 YEDPLNHEAAAVLRDNPKLF 160
E N +A+ + RD+ + F
Sbjct: 135 DESGANVDASKMWRDDREQF 154
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Query: 32 LRLHRGSV-IQPPSARFITFPNGKDDLMNFEVSIRP-DEGYYVGGTFVFTFQVSPIYPHE 89
L LHR ++ + + IT +D+M +EV I + G F T + Y +
Sbjct: 26 LLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYA 85
Query: 90 APKVKCKTKVYHPNIDLE-GNVCLNILR--EDWKPVLNINTIIYGLFHLFTQPNYEDPLN 146
P VK T +HPN+D G C++ L E W +++I+ L + + P E+P+N
Sbjct: 86 PPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVN 145
Query: 147 HEAAAVLRDNPKLFESNVR 165
EAA +L + L+ + +R
Sbjct: 146 LEAARILVKDESLYRTILR 164
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 51 PNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVK-CKTKVYHPNI-DLE 107
P + DL +E I P + Y F +V YP PK+ + + H N+
Sbjct: 41 PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSAT 100
Query: 108 GNVCLNILR-EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 154
G +CLNIL+ E+W PV ++ ++ ++ L +P + PL+ + A++R
Sbjct: 101 GEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAIIR 148
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Query: 50 FPNGKDDLMNFEVSIR-PDEGYY--VGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDL 106
F D + N+ + ++ P + Y G T+ + S YPHE P V+ T VY P +
Sbjct: 42 FSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTG 101
Query: 107 EGNVCLNILREDWKPVLNINTII-YGLFHLFTQ--PNYEDPLNHEAAAVLRDNPKLFESN 163
EG +C ++ + W P + + +I L +F+Q +D +N EA L P+ F +
Sbjct: 102 EGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAAR 161
Query: 164 VRRA 167
VRR
Sbjct: 162 VRRG 165
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 51 PNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVK-CKTKVYHPNI-DLE 107
P + DL +E I P + Y F +V YP PK+ + + H N+
Sbjct: 41 PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSAT 100
Query: 108 GNVCLNILR-EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 154
G +CLNIL+ E+W PV ++ ++ ++ L +P + PL+ + ++R
Sbjct: 101 GEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGNIIR 148
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 51 PNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVK-CKTKVYHPNI-DLE 107
P + DL +E I P + Y F +V YP PK+ + + H N+
Sbjct: 41 PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSAT 100
Query: 108 GNVCLNILR-EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 154
G +CLNIL+ E+W PV ++ ++ ++ L +P + PL+ + ++R
Sbjct: 101 GEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIR 148
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 71 YVGGTFVFTFQVSPIYPHEAPKVKCKTK--VYHPNIDLEGNVCLNILREDWKPVLNINTI 128
Y G F F+ S YP ++P+V + HP++ G++CL+IL EDW P L++ ++
Sbjct: 68 YEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSV 127
Query: 129 IYGLFHLFT 137
+ + +
Sbjct: 128 CLSIISMLS 136
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 23/123 (18%)
Query: 66 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH-----PNIDLEGNVCLNIL----- 115
P + Y G F F YP P V +T H PN+ +G VCL+IL
Sbjct: 119 PADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHG 178
Query: 116 --REDWKP--------VLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 165
E W P ++++ ++I F +P YE + + + ++ N+R
Sbjct: 179 RPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGT---QSSREYDGNIR 235
Query: 166 RAM 168
+A
Sbjct: 236 QAT 238
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af
pdb|3I6D|B Chain B, Crystal Structure Of Ppo From Bacillus Subtilis With Af
Length = 470
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 86 YPHEAPKVKCKTKVY------HPNIDLEGNVCLNILREDWKPVLNIN 126
+PH AP+ K + Y +DL N +NI+ ED K V+NIN
Sbjct: 352 WPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKVMNIN 398
>pdb|2YZ0|A Chain A, Solution Structure Of RwdGI DOMAIN OF SACCHAROMYCES
Cerevisiae Gcn2
Length = 138
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 60 FEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDW 119
FE+++R + V + F ++P+YP+ AP+++ K N+ + L +L+ ++
Sbjct: 48 FEITLRSVDKEPVESSITLHFAMTPMYPYTAPEIEFK------NVQNVMDSQLQMLKSEF 101
Query: 120 KPVLNIN 126
K + N +
Sbjct: 102 KKIHNTS 108
>pdb|3PZ9|A Chain A, Native Structure Of Endo-1,4-Beta-D-Mannanase From
Thermotoga Petrophila Rku-1
pdb|3PZG|A Chain A, I222 Crystal Form Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1
pdb|3PZI|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Beta-D-Glucose
pdb|3PZM|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Three Glycerol Molecules
pdb|3PZN|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Citrate And Glycerol
pdb|3PZO|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Three Maltose Molecules
pdb|3PZQ|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Maltose And Glycerol
Length = 383
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 118 DWKPVLNINTIIYGLFHLFTQPNYEDPLNHE--AAAVLRDNPKL 159
DWK +L+I T+ +G FHL+ P N+ A + D+ K+
Sbjct: 252 DWKKLLSIETVDFGTFHLYPSHWGVSPENYAQWGAKWIEDHIKI 295
>pdb|2H3D|A Chain A, Crystal Structure Of Mouse Nicotinamide
PhosphoribosyltransferaseVISFATINPRE-B Cell Colony
Enhancing Factor In Complex With Nicotinamide
Mononuleotide
pdb|2H3D|B Chain B, Crystal Structure Of Mouse Nicotinamide
PhosphoribosyltransferaseVISFATINPRE-B Cell Colony
Enhancing Factor In Complex With Nicotinamide
Mononuleotide
Length = 494
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 23 PVKKQSAGELRLHRGSVIQPPSARFITFPNGKDDLMNF 60
P K+ G L LHR P+ F+T GK DL +
Sbjct: 424 PNKRSKKGRLSLHR-----TPAGNFVTLEEGKGDLEEY 456
>pdb|2GVL|A Chain A, Crystal Structure Of Murine Nmprtase
pdb|2GVL|B Chain B, Crystal Structure Of Murine Nmprtase
Length = 491
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 23 PVKKQSAGELRLHRGSVIQPPSARFITFPNGKDDLMNF 60
P K+ G L LHR P+ F+T GK DL +
Sbjct: 421 PNKRSKKGRLSLHR-----TPAGNFVTLEEGKGDLEEY 453
>pdb|2GVJ|A Chain A, Crystal Structure Of Human Nmprtase In Complex With Fk866
pdb|2GVJ|B Chain B, Crystal Structure Of Human Nmprtase In Complex With Fk866
Length = 491
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 23 PVKKQSAGELRLHRGSVIQPPSARFITFPNGKDDLMNF 60
P K+ G L LHR P+ F+T GK DL +
Sbjct: 421 PNKRSKKGRLSLHR-----TPAGNFVTLEEGKGDLEEY 453
>pdb|3DGR|A Chain A, Crystal Structure Of Human Nampt Complexed With Adp
Analogue
pdb|3DGR|B Chain B, Crystal Structure Of Human Nampt Complexed With Adp
Analogue
pdb|3DHD|A Chain A, Crystal Structure Of Human Nampt Complexed With
Nicotinamide Mononucleotide And Pyrophosphate
pdb|3DHD|B Chain B, Crystal Structure Of Human Nampt Complexed With
Nicotinamide Mononucleotide And Pyrophosphate
pdb|3DHF|A Chain A, Crystal Structure Of Phosphorylated Mimic Form Of Human
Nampt Complexed With Nicotinamide Mononucleotide And
Pyrophosphate
pdb|3DHF|B Chain B, Crystal Structure Of Phosphorylated Mimic Form Of Human
Nampt Complexed With Nicotinamide Mononucleotide And
Pyrophosphate
pdb|3DKJ|A Chain A, Crystal Structure Of Human Nampt Complexed With Benzamide
And Phosphoribosyl Pyrophosphate
pdb|3DKJ|B Chain B, Crystal Structure Of Human Nampt Complexed With Benzamide
And Phosphoribosyl Pyrophosphate
pdb|3DKL|A Chain A, Crystal Structure Of Phosphorylated Mimic Form Of Human
Nampt Complexed With Benzamide And Phosphoribosyl
Pyrophosphate
pdb|3DKL|B Chain B, Crystal Structure Of Phosphorylated Mimic Form Of Human
Nampt Complexed With Benzamide And Phosphoribosyl
Pyrophosphate
Length = 484
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 23 PVKKQSAGELRLHRGSVIQPPSARFITFPNGKDDLMNF 60
P K+ G L LHR P+ F+T GK DL +
Sbjct: 421 PNKRSKKGRLSLHR-----TPAGNFVTLEEGKGDLEEY 453
>pdb|2GVG|A Chain A, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|B Chain B, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|C Chain C, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|D Chain D, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|E Chain E, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|F Chain F, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
Length = 491
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 23 PVKKQSAGELRLHRGSVIQPPSARFITFPNGKDDLMNF 60
P K+ G L LHR P+ F+T GK DL +
Sbjct: 421 PNKRSKKGRLSLHR-----TPAGNFVTLEEGKGDLEEY 453
>pdb|2G95|A Chain A, Crystal Structure Of VisfatinPRE-B Cell Colony Enhancing
Factor 1NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE
pdb|2G95|B Chain B, Crystal Structure Of VisfatinPRE-B Cell Colony Enhancing
Factor 1NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE
pdb|2G96|A Chain A, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With Niconamide Mononucleotide
pdb|2G96|B Chain B, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With Niconamide Mononucleotide
pdb|2G97|A Chain A, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With The Specific Inhibitor Fk-866
pdb|2G97|B Chain B, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With The Specific Inhibitor Fk-866
pdb|3G8E|A Chain A, Crystal Structure Of Rattus Norvegicus VisfatinPBEFNAMPT
In Complex With An Fk866-Based Inhibitor
pdb|3G8E|B Chain B, Crystal Structure Of Rattus Norvegicus VisfatinPBEFNAMPT
In Complex With An Fk866-Based Inhibitor
Length = 491
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 23 PVKKQSAGELRLHRGSVIQPPSARFITFPNGKDDLMNF 60
P K+ G L LHR P+ F+T GK DL +
Sbjct: 421 PNKRSKKGRLSLHR-----TPAGTFVTLEEGKGDLEEY 453
>pdb|2E5B|A Chain A, Crystal Structure Of Human Nmprtase As Free-Form
pdb|2E5B|B Chain B, Crystal Structure Of Human Nmprtase As Free-Form
pdb|2E5C|A Chain A, Crystal Structure Of Human Nmprtase Complexed With
5'-Phosphoribosyl- 1'-Pyrophosphate
pdb|2E5C|B Chain B, Crystal Structure Of Human Nmprtase Complexed With
5'-Phosphoribosyl- 1'-Pyrophosphate
pdb|2E5D|A Chain A, Crystal Structure Of Human Nmprtase Complexed With
Nicotinamide
pdb|2E5D|B Chain B, Crystal Structure Of Human Nmprtase Complexed With
Nicotinamide
Length = 499
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 23 PVKKQSAGELRLHRGSVIQPPSARFITFPNGKDDLMNF 60
P K+ G L LHR P+ F+T GK DL +
Sbjct: 429 PNKRSKKGRLSLHR-----TPAGNFVTLEEGKGDLEEY 461
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Query: 64 IRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN--VCLNILR---ED 118
+ P EG Y G +F + +P + P + T PN + N +CL+I +
Sbjct: 55 MTPYEGGYYHGKLIFPRE----FPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDT 106
Query: 119 WKPVLNINTIIYGLFHLFTQ 138
W P +++TI+ GL +
Sbjct: 107 WNPAWSVSTILTGLLSFMVE 126
>pdb|2YP2|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus
pdb|2YP3|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus In Complex With
Human Receptor Analogue 6sln
pdb|2YP4|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
pdb|2YP5|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus In Complex With
Avian Receptor Analogue 3sln
Length = 503
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 15/97 (15%)
Query: 74 GTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLF 133
G F S I +AP KC ++ PN + + KP N+N I YG
Sbjct: 256 GYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPND----------KPFQNVNRITYGAC 305
Query: 134 HLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAG 170
P Y + A +R+ P+ + A+AG
Sbjct: 306 -----PRYVKQNTLKLATGMRNVPEKQTQGIFGAIAG 337
>pdb|2YP7|A Chain A, Haemagglutinin Of 2005 Human H3n2 Virus
pdb|2YP8|A Chain A, Haemagglutinin Of 2005 Human H3n2 Virus In Complex With
Human Receptor Analogue 6sln
pdb|2YP9|A Chain A, Haemagglutinin Of 2005 Human H3n2 Virus In Complex With
Avian Receptor Analogue 3sln
Length = 503
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 15/97 (15%)
Query: 74 GTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLF 133
G F S I +AP KC ++ PN + + KP N+N I YG
Sbjct: 256 GYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPND----------KPFQNVNRITYGAC 305
Query: 134 HLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAG 170
P Y + A +R+ P+ + A+AG
Sbjct: 306 -----PRYVKQNTLKLATGMRNVPEKQTQGIFGAIAG 337
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,915,425
Number of Sequences: 62578
Number of extensions: 251572
Number of successful extensions: 661
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 504
Number of HSP's gapped (non-prelim): 118
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)