Query 030162
Match_columns 182
No_of_seqs 134 out of 1151
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 09:30:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030162.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030162hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 2.7E-51 5.9E-56 301.8 13.1 142 30-173 2-147 (148)
2 COG5078 Ubiquitin-protein liga 100.0 1.3E-50 2.8E-55 304.2 15.3 144 29-173 5-152 (153)
3 KOG0420 Ubiquitin-protein liga 100.0 2.1E-47 4.5E-52 285.6 15.2 181 1-182 1-184 (184)
4 KOG0419 Ubiquitin-protein liga 100.0 2.4E-47 5.3E-52 273.7 14.0 147 26-174 1-151 (152)
5 PTZ00390 ubiquitin-conjugating 100.0 9.8E-47 2.1E-51 285.6 15.8 146 29-176 2-151 (152)
6 PLN00172 ubiquitin conjugating 100.0 1.1E-45 2.3E-50 278.7 15.8 141 30-172 2-146 (147)
7 KOG0425 Ubiquitin-protein liga 100.0 2.6E-42 5.5E-47 254.6 14.5 142 30-172 6-164 (171)
8 KOG0424 Ubiquitin-protein liga 100.0 6.6E-42 1.4E-46 249.1 14.5 148 26-173 1-157 (158)
9 PF00179 UQ_con: Ubiquitin-con 100.0 2.8E-41 6.1E-46 252.7 12.6 135 33-168 1-140 (140)
10 KOG0418 Ubiquitin-protein liga 100.0 8.2E-41 1.8E-45 253.5 12.4 143 30-174 4-154 (200)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 3.3E-40 7.1E-45 247.2 14.1 135 32-168 2-141 (141)
12 KOG0426 Ubiquitin-protein liga 100.0 3.9E-40 8.4E-45 236.7 13.0 144 27-171 2-162 (165)
13 smart00212 UBCc Ubiquitin-conj 100.0 2E-39 4.3E-44 244.0 14.9 140 32-172 1-145 (145)
14 KOG0421 Ubiquitin-protein liga 100.0 6.6E-40 1.4E-44 238.6 11.8 143 25-170 25-171 (175)
15 KOG0416 Ubiquitin-protein liga 100.0 1.4E-37 3.1E-42 232.3 9.1 144 29-175 3-150 (189)
16 KOG0422 Ubiquitin-protein liga 100.0 1.1E-36 2.5E-41 220.6 12.5 146 29-174 2-150 (153)
17 KOG0423 Ubiquitin-protein liga 100.0 5.3E-32 1.2E-36 202.9 8.0 144 26-171 7-154 (223)
18 KOG0427 Ubiquitin conjugating 99.9 1.2E-27 2.6E-32 172.0 9.8 120 25-147 11-136 (161)
19 KOG0894 Ubiquitin-protein liga 99.9 1.4E-26 3E-31 179.4 10.4 109 27-139 3-118 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 4.2E-23 9.1E-28 160.6 12.2 136 33-170 23-167 (258)
21 KOG0428 Non-canonical ubiquiti 99.9 2.6E-21 5.6E-26 152.8 8.9 109 26-137 8-121 (314)
22 KOG0895 Ubiquitin-conjugating 99.6 3.9E-15 8.5E-20 137.3 5.6 108 29-138 851-971 (1101)
23 KOG0896 Ubiquitin-conjugating 99.5 1.4E-13 3E-18 100.0 8.1 107 31-138 7-123 (138)
24 KOG0895 Ubiquitin-conjugating 99.5 1.8E-13 3.8E-18 126.6 10.9 116 22-139 275-405 (1101)
25 KOG0897 Predicted ubiquitin-co 98.6 1.5E-07 3.3E-12 66.8 6.2 93 76-173 13-115 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.6 2E-07 4.3E-12 69.1 6.7 67 72-138 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.2 5.2E-06 1.1E-10 60.6 6.2 79 56-138 31-117 (121)
28 KOG2391 Vacuolar sorting prote 97.4 0.00052 1.1E-08 57.6 6.8 75 65-140 57-139 (365)
29 PF08694 UFC1: Ubiquitin-fold 96.1 0.0097 2.1E-07 44.2 4.4 99 27-129 22-135 (161)
30 smart00591 RWD domain in RING 94.9 0.18 3.9E-06 34.9 7.3 27 72-98 39-65 (107)
31 PF14457 Prok-E2_A: Prokaryoti 94.6 0.061 1.3E-06 41.2 4.5 62 77-138 56-126 (162)
32 PF14462 Prok-E2_E: Prokaryoti 94.2 0.48 1E-05 34.6 8.1 79 57-137 23-120 (122)
33 PF05773 RWD: RWD domain; Int 93.7 0.22 4.7E-06 34.7 5.5 44 56-99 28-74 (113)
34 PF09765 WD-3: WD-repeat regio 79.0 3.1 6.8E-05 34.8 4.1 87 28-136 98-186 (291)
35 KOG3357 Uncharacterized conser 77.2 6.9 0.00015 28.8 4.9 96 26-127 24-136 (167)
36 KOG4018 Uncharacterized conser 76.3 4.5 9.7E-05 32.3 4.1 20 75-94 50-69 (215)
37 KOG0309 Conserved WD40 repeat- 64.0 24 0.00052 33.5 6.5 39 59-98 450-491 (1081)
38 PF06113 BRE: Brain and reprod 62.1 21 0.00047 30.4 5.5 65 58-133 54-121 (333)
39 PF14460 Prok-E2_D: Prokaryoti 62.1 13 0.00028 28.6 3.9 40 96-138 89-131 (175)
40 TIGR03737 PRTRC_B PRTRC system 46.9 32 0.00069 27.8 4.0 39 97-139 131-173 (228)
41 cd00421 intradiol_dioxygenase 41.7 35 0.00077 25.3 3.3 24 73-96 65-89 (146)
42 KOG1047 Bifunctional leukotrie 41.1 25 0.00054 32.2 2.8 30 68-98 247-279 (613)
43 cd03457 intradiol_dioxygenase_ 40.2 38 0.00082 26.5 3.4 24 73-96 86-109 (188)
44 PRK05414 urocanate hydratase; 38.4 65 0.0014 29.3 4.9 26 146-171 281-306 (556)
45 PF06113 BRE: Brain and reprod 35.1 45 0.00097 28.5 3.2 24 75-98 307-330 (333)
46 TIGR01228 hutU urocanate hydra 34.9 84 0.0018 28.5 5.0 26 146-171 272-297 (545)
47 cd03459 3,4-PCD Protocatechuat 33.2 58 0.0013 24.7 3.4 24 73-96 72-100 (158)
48 PF13950 Epimerase_Csub: UDP-g 31.8 50 0.0011 20.8 2.4 19 118-136 37-55 (62)
49 KOG4445 Uncharacterized conser 31.6 55 0.0012 27.8 3.1 25 74-98 45-69 (368)
50 KOG0662 Cyclin-dependent kinas 31.5 51 0.0011 26.3 2.8 55 88-142 167-225 (292)
51 KOG0177 20S proteasome, regula 26.9 67 0.0014 25.3 2.7 27 107-133 135-161 (200)
52 cd05845 Ig2_L1-CAM_like Second 26.0 1.3E+02 0.0028 20.7 3.8 26 71-98 16-41 (95)
53 PF01175 Urocanase: Urocanase; 25.8 82 0.0018 28.7 3.4 26 146-171 271-296 (546)
54 PF12884 TORC_N: Transducer of 24.6 17 0.00037 23.6 -0.7 10 158-167 21-30 (67)
55 TIGR02423 protocat_alph protoc 21.4 1.2E+02 0.0025 23.8 3.2 24 73-96 96-124 (193)
56 PF11333 DUF3135: Protein of u 21.2 1.6E+02 0.0035 19.8 3.5 25 146-170 6-30 (83)
57 COG2987 HutU Urocanate hydrata 21.0 1.9E+02 0.0041 26.1 4.7 25 147-171 282-306 (561)
58 PF03366 YEATS: YEATS family; 20.6 2.8E+02 0.006 18.6 5.2 42 58-101 2-44 (84)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-51 Score=301.75 Aligned_cols=142 Identities=30% Similarity=0.637 Sum_probs=136.0
Q ss_pred HHHHHHhh-hCC--CCCCCceEEccCCCCCceEEEEEE-eCCCCCCCCCEEEEEEEcCCCCCCCCCceeeeccccccccc
Q 030162 30 GELRLHRG-SVI--QPPSARFITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID 105 (182)
Q Consensus 30 ~~~RL~~E-~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~ 105 (182)
+.+||.+| +++ +++++|++. +. ++|+++|+++| ||.+||||||+|++.|.||++||++||+|+|.|+||||||+
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~-~~-~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~ 79 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAG-PV-GDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNID 79 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccC-CC-CCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcC
Confidence 35699999 888 778999886 66 79999999999 99999999999999999999999999999999999999999
Q ss_pred CCCceEcccccCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030162 106 LEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYV 173 (182)
Q Consensus 106 ~~G~vc~~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 173 (182)
.+|.||+|+|++.|+|+.+|.+||.+|++||.+||+++|++.++|.+|+.|+.+|++.||+|+++++.
T Consensus 80 ~~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 80 SNGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred ccccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999874
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-50 Score=304.22 Aligned_cols=144 Identities=36% Similarity=0.678 Sum_probs=136.4
Q ss_pred HHHHHHHhh-hCC--CCCCCceEEccCCCCCceEEEEEE-eCCCCCCCCCEEEEEEEcCCCCCCCCCceeeecccccccc
Q 030162 29 AGELRLHRG-SVI--QPPSARFITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNI 104 (182)
Q Consensus 29 ~~~~RL~~E-~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI 104 (182)
.+.+||++| +.+ .+++++++. |..++|+++|+++| ||.+|||+||+|++.|.||++||++||+|+|.|+||||||
T Consensus 5 ~a~~RL~kE~~~l~~~~~~~~~a~-p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV 83 (153)
T COG5078 5 SALKRLLKELKKLQKDPPPGISAG-PVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNV 83 (153)
T ss_pred hHHHHHHHHHHHHhcCCCCceEEE-ECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCc
Confidence 389999999 988 456788885 66455999999999 9999999999999999999999999999999999999999
Q ss_pred cCCCceEcccccCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030162 105 DLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYV 173 (182)
Q Consensus 105 ~~~G~vc~~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 173 (182)
|.+|+||+++|++.|+|++++++||.+|+++|.+||+++|+|.|||++|+.|+++|.++||+++++++.
T Consensus 84 ~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 84 DPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999998864
No 3
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-47 Score=285.60 Aligned_cols=181 Identities=62% Similarity=1.042 Sum_probs=170.9
Q ss_pred CcchhhHHHHHHHHHhhhcCCCCCCCCcHHHHHHHhh-hCCCCCCCceEEccCCCCCceE--EEEEEeCCCCCCCCCEEE
Q 030162 1 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRG-SVIQPPSARFITFPNGKDDLMN--FEVSIRPDEGYYVGGTFV 77 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~RL~~E-~~l~~~~~~~~~~~~~~~n~~~--w~~~igp~~tpy~gg~f~ 77 (182)
|++||+++|+++++.++.+. ++....|.++-||++| .+++.|++++..++...+++.. ++++|.|.++.|+||.|.
T Consensus 1 M~~L~~~~~k~~~~~~~~~~-~~~~~~s~a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~PdEGyY~gGkf~ 79 (184)
T KOG0420|consen 1 MIKLFKLKKKKREEEQSRYT-STRKKVSAALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTITPDEGYYQGGKFR 79 (184)
T ss_pred CccHHHHHHhhhhhcccccc-cccccccHHHHHHHhhhhhccCCCccccccccCCcccccceEEEEEccCcceecCceEE
Confidence 89999999999988775533 6678899999999999 9999999999988886666655 999999999999999999
Q ss_pred EEEEcCCCCCCCCCceeeecccccccccCCCceEcccccCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHhCH
Q 030162 78 FTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNP 157 (182)
Q Consensus 78 ~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~G~vc~~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~a~~~~~~~~ 157 (182)
|.+.+|+.||++||+|.++|+|||||||.+|.||+.+|+++|+|..++.+|+.+|+.||.+|+++||+|.+||.++..|+
T Consensus 80 F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~ 159 (184)
T KOG0420|consen 80 FKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNR 159 (184)
T ss_pred EEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccccCC
Q 030162 158 KLFESNVRRAMAGGYVGQTFFIRCI 182 (182)
Q Consensus 158 ~~f~~~~r~~~~~~~~~~~~~~~~~ 182 (182)
+.|+.+||..+.+|+++...|++||
T Consensus 160 e~F~~~Vr~~m~gg~v~~~~f~~~~ 184 (184)
T KOG0420|consen 160 EGFENNVRRAMSGGCVGQTSFDRCM 184 (184)
T ss_pred HHHHHHHHHHHhcCccCceeccccC
Confidence 9999999999999999999999986
No 4
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-47 Score=273.72 Aligned_cols=147 Identities=28% Similarity=0.646 Sum_probs=140.2
Q ss_pred CCcHHHHHHHhh-hCC--CCCCCceEEccCCCCCceEEEEEE-eCCCCCCCCCEEEEEEEcCCCCCCCCCceeeeccccc
Q 030162 26 KQSAGELRLHRG-SVI--QPPSARFITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 101 (182)
Q Consensus 26 ~~s~~~~RL~~E-~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 101 (182)
|+.+|-+||++| +++ +++.|++.. |. ++|++.|.++| ||.+|||+||+|++.|.|+++||.+||.|+|++.+||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~-P~-~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFH 78 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAA-PV-ENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFH 78 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCC-CC-ccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccC
Confidence 567899999999 999 667888774 77 89999999999 9999999999999999999999999999999999999
Q ss_pred ccccCCCceEcccccCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHhcCCCC
Q 030162 102 PNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVG 174 (182)
Q Consensus 102 PnI~~~G~vc~~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~ 174 (182)
|||+.+|.+|+|+|...|+|.|++.+||.+||+||.+|++++|+|.+||++|.+|+.+|+++++..+.++++.
T Consensus 79 PNvya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw~~ 151 (152)
T KOG0419|consen 79 PNVYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQSWSD 151 (152)
T ss_pred CCcCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988764
No 5
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=9.8e-47 Score=285.61 Aligned_cols=146 Identities=29% Similarity=0.560 Sum_probs=137.6
Q ss_pred HHHHHHHhh-hCC--CCCCCceEEccCCCCCceEEEEEE-eCCCCCCCCCEEEEEEEcCCCCCCCCCceeeecccccccc
Q 030162 29 AGELRLHRG-SVI--QPPSARFITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNI 104 (182)
Q Consensus 29 ~~~~RL~~E-~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI 104 (182)
++++||++| +++ ++++++.+. +. ++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 2 ~~~kRl~~E~~~l~~~~~~~i~~~-~~-~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV 79 (152)
T PTZ00390 2 SISKRIEKETQNLANDPPPGIKAE-PD-PGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNI 79 (152)
T ss_pred cHHHHHHHHHHHHHhCCCCCeEEE-EC-CCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceE
Confidence 368999999 999 567788774 66 68999999999 9999999999999999999999999999999999999999
Q ss_pred cCCCceEcccccCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHhcCCCCCc
Q 030162 105 DLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQT 176 (182)
Q Consensus 105 ~~~G~vc~~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~~~ 176 (182)
+.+|.||+++|.++|+|++|+.+||.+|+++|.+|++++|+|.+||.+|.+|+++|+++||+|+.+++.+..
T Consensus 80 ~~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~~~ 151 (152)
T PTZ00390 80 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKHNK 151 (152)
T ss_pred CCCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999887543
No 6
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.1e-45 Score=278.66 Aligned_cols=141 Identities=34% Similarity=0.704 Sum_probs=133.8
Q ss_pred HHHHHHhh-hCC--CCCCCceEEccCCCCCceEEEEEE-eCCCCCCCCCEEEEEEEcCCCCCCCCCceeeeccccccccc
Q 030162 30 GELRLHRG-SVI--QPPSARFITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID 105 (182)
Q Consensus 30 ~~~RL~~E-~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~ 105 (182)
+.+||++| +++ ++++++.+. +. ++|+++|+++| ||++|||+||.|++.|.||++||++||+|+|.|+||||||+
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~-~~-~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~ 79 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAG-PS-DENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNIN 79 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEE-EC-CCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceEC
Confidence 46899999 999 557777775 55 68999999999 99999999999999999999999999999999999999999
Q ss_pred CCCceEcccccCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030162 106 LEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGY 172 (182)
Q Consensus 106 ~~G~vc~~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 172 (182)
.+|.||+++|.++|+|++|+++||.+|+++|.+|++++|+|.+||.+|.+|+++|+++||+|+.+++
T Consensus 80 ~~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 80 SNGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred CCCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999998775
No 7
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-42 Score=254.65 Aligned_cols=142 Identities=30% Similarity=0.622 Sum_probs=130.2
Q ss_pred HHHHHHhh-hCC--CCCCCceEEccCCCCCceEEEEEE-eCCCCCCCCCEEEEEEEcCCCCCCCCCceeeeccccccccc
Q 030162 30 GELRLHRG-SVI--QPPSARFITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID 105 (182)
Q Consensus 30 ~~~RL~~E-~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~ 105 (182)
+..-|+++ ++| .+..+.+++.-+ +.|++.|.|.| ||++|+|+||+|+..+.||.+||.+||+++|.|.+|||||+
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd-~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy 84 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVD-DSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVY 84 (171)
T ss_pred hHHHHHHHHHHHhcCCCCcccccccc-CCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcC
Confidence 45566777 777 456788887444 67999999999 99999999999999999999999999999999999999999
Q ss_pred CCCceEccccc-------------CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030162 106 LEGNVCLNILR-------------EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGY 172 (182)
Q Consensus 106 ~~G~vc~~~l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 172 (182)
++|+||+++|. +.|.|.+|+++||++|.+||.+||.++|+|-|||..|+.|+++|.+++++|+++..
T Consensus 85 ~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s~ 164 (171)
T KOG0425|consen 85 EDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRSQ 164 (171)
T ss_pred CCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 99999999994 46999999999999999999999999999999999999999999999999998754
No 8
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-42 Score=249.10 Aligned_cols=148 Identities=28% Similarity=0.499 Sum_probs=135.9
Q ss_pred CCcHHHHHHHhh-hCC--CCCCCceEE---ccCCCCCceEEEEEE-eCCCCCCCCCEEEEEEEcCCCCCCCCCceeeecc
Q 030162 26 KQSAGELRLHRG-SVI--QPPSARFIT---FPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTK 98 (182)
Q Consensus 26 ~~s~~~~RL~~E-~~l--~~~~~~~~~---~~~~~~n~~~w~~~i-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 98 (182)
|++.+..||+.| +.+ +++-|.... ..++..|+..|++.| |+.+|+||||.|.+++.||++||++||+++|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 456789999999 999 778887764 222234899999999 9999999999999999999999999999999999
Q ss_pred cccccccCCCceEcccccCc--cCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030162 99 VYHPNIDLEGNVCLNILRED--WKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYV 173 (182)
Q Consensus 99 i~HPnI~~~G~vc~~~l~~~--W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 173 (182)
+|||||+.+|.||+++|+++ |+|+.||.+||.+|+.||.+||+.+|+|.||...|..|+.+|+++||.++.+++.
T Consensus 81 l~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 81 LFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred CcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999864 9999999999999999999999999999999999999999999999999988764
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=2.8e-41 Score=252.66 Aligned_cols=135 Identities=36% Similarity=0.723 Sum_probs=121.8
Q ss_pred HHHhh-hCC--CCCCCceEEccCCCCCceEEEEEE-eCCCCCCCCCEEEEEEEcCCCCCCCCCceeeecccccccccCCC
Q 030162 33 RLHRG-SVI--QPPSARFITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEG 108 (182)
Q Consensus 33 RL~~E-~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~G 108 (182)
||++| +++ +++.|+.+.... ++|+++|+++| ||++|||+||.|++.|.||++||++||+|+|.|+||||||+.+|
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~-~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G 79 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSE-DDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENG 79 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEES-TTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTS
T ss_pred CHHHHHHHHhhCCCCCEEEEECC-CCChheEEEEEeccCccceecccccccccccccccccccccccccccccccccccc
Confidence 89999 988 778899886433 45999999999 99999999999999999999999999999999999999999999
Q ss_pred ceEcccccC-ccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHH
Q 030162 109 NVCLNILRE-DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAM 168 (182)
Q Consensus 109 ~vc~~~l~~-~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~ 168 (182)
.||+++|.. .|+|++++.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|+++||+|.
T Consensus 80 ~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 80 RICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred cchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 999999985 599999999999999999999999999999999999999999999999983
No 10
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-41 Score=253.52 Aligned_cols=143 Identities=28% Similarity=0.529 Sum_probs=132.3
Q ss_pred HHHHHHhh-hCC--CC---CCCceEEccCCCCCceEEEEEE-eCCCCCCCCCEEEEEEEcCCCCCCCCCceeeecccccc
Q 030162 30 GELRLHRG-SVI--QP---PSARFITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHP 102 (182)
Q Consensus 30 ~~~RL~~E-~~l--~~---~~~~~~~~~~~~~n~~~w~~~i-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 102 (182)
+.+||++| +++ +. ..++.+. ..++|+.+..+.| ||+|||||||+|.++|.+|++|||+||+|+|.|+||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve--~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHP 81 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVE--MVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHP 81 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEE--EccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecC
Confidence 78999999 888 22 3455453 3368999999999 99999999999999999999999999999999999999
Q ss_pred cccC-CCceEcccccCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHhcCCCC
Q 030162 103 NIDL-EGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVG 174 (182)
Q Consensus 103 nI~~-~G~vc~~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~ 174 (182)
||++ +|.||+|++++.|.+++|+..+|.+|+++|..|++.+|.+..+|++|.+|++.|.+.||.|...++-+
T Consensus 82 nVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 82 NVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred CCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 9998 99999999999999999999999999999999999999999999999999999999999998887766
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=3.3e-40 Score=247.24 Aligned_cols=135 Identities=35% Similarity=0.702 Sum_probs=126.9
Q ss_pred HHHHhh-hCC--CCCCCceEEccCCCCCceEEEEEE-eCCCCCCCCCEEEEEEEcCCCCCCCCCceeeecccccccccCC
Q 030162 32 LRLHRG-SVI--QPPSARFITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLE 107 (182)
Q Consensus 32 ~RL~~E-~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~ 107 (182)
+||++| +.+ +.+.|+.+. +. ++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.+++|||||+.+
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~-~~-~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~ 79 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAE-PV-EENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDEN 79 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEE-EC-CCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCC
Confidence 799999 999 446677774 55 67999999999 9999999999999999999999999999999999999999999
Q ss_pred CceEcccccCc-cCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHH
Q 030162 108 GNVCLNILRED-WKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAM 168 (182)
Q Consensus 108 G~vc~~~l~~~-W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~ 168 (182)
|.||++++..+ |+|++++++||.+|+++|.+|+.++|+|.+||.+|++|+++|+++|++|+
T Consensus 80 G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 80 GKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CCCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 99999999877 99999999999999999999999999999999999999999999999874
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-40 Score=236.74 Aligned_cols=144 Identities=27% Similarity=0.565 Sum_probs=136.0
Q ss_pred CcHHHHHHHhh-hCC--CCCCCceEEccCCCCCceEEEEEE-eCCCCCCCCCEEEEEEEcCCCCCCCCCceeeecccccc
Q 030162 27 QSAGELRLHRG-SVI--QPPSARFITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHP 102 (182)
Q Consensus 27 ~s~~~~RL~~E-~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 102 (182)
+..|+|||++| ++| +.|+|+... |.++||+++|.+.| ||++|+|+||+|..++.||.+||.+||+++|...+|||
T Consensus 2 ~~~AlkRLm~EykqLt~~~P~GIvAg-P~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 2 AGTALKRLMAEYKQLTLNPPEGIVAG-PINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred chhHHHHHHHHHHHHccCCCCcceeC-CCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 45789999999 999 778888775 88799999999999 99999999999999999999999999999999999999
Q ss_pred cccCCCceEccccc-------------CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHh
Q 030162 103 NIDLEGNVCLNILR-------------EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMA 169 (182)
Q Consensus 103 nI~~~G~vc~~~l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~ 169 (182)
||+.+|+||+++|. +.|+|.++++.||+++.+||.+||.++.+|.+|+.+.++|+++|++.||..+.
T Consensus 81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvr 160 (165)
T KOG0426|consen 81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVR 160 (165)
T ss_pred cccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999994 57999999999999999999999999999999999999999999999999987
Q ss_pred cC
Q 030162 170 GG 171 (182)
Q Consensus 170 ~~ 171 (182)
+.
T Consensus 161 Kt 162 (165)
T KOG0426|consen 161 KT 162 (165)
T ss_pred Hh
Confidence 63
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=2e-39 Score=244.04 Aligned_cols=140 Identities=34% Similarity=0.684 Sum_probs=130.6
Q ss_pred HHHHhh-hCC--CCCCCceEEccCCCCCceEEEEEE-eCCCCCCCCCEEEEEEEcCCCCCCCCCceeeecccccccccCC
Q 030162 32 LRLHRG-SVI--QPPSARFITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLE 107 (182)
Q Consensus 32 ~RL~~E-~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~ 107 (182)
+||++| +.+ +.++++.+ ++..++|+++|+++| ||.+|||+||.|++.|.||++||.+||+|+|.++++||||+.+
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v-~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~ 79 (145)
T smart00212 1 KRLLKELKELLKDPPPGISA-YPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSS 79 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEE-EECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCC
Confidence 599999 888 45667776 466345999999999 9999999999999999999999999999999999999999999
Q ss_pred CceEccccc-CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030162 108 GNVCLNILR-EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGY 172 (182)
Q Consensus 108 G~vc~~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 172 (182)
|.||++++. ++|+|++++++||.+|+++|.+|+.++|+|.+|+.+|.+|++.|+++|++++.+++
T Consensus 80 G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 80 GEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999998 89999999999999999999999999999999999999999999999999998764
No 14
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-40 Score=238.64 Aligned_cols=143 Identities=27% Similarity=0.545 Sum_probs=134.0
Q ss_pred CCCcHHHHHHHhh-hCC--CCCCCceEEccCCCCCceEEEEEE-eCCCCCCCCCEEEEEEEcCCCCCCCCCceeeecccc
Q 030162 25 KKQSAGELRLHRG-SVI--QPPSARFITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVY 100 (182)
Q Consensus 25 ~~~s~~~~RL~~E-~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 100 (182)
...-+..+||++| ..| ...+|++. +|. +||++.|.++| ||.+|+|+|-.|++.+.||.+||++||+|+|+|++|
T Consensus 25 ~~~~~V~KRLq~ELm~Lmms~~~gISA-FP~-~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~ 102 (175)
T KOG0421|consen 25 VDGHSVTKRLQSELMGLMMSNTPGISA-FPE-SDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCF 102 (175)
T ss_pred ccCchHHHHHHHHHHHHHhcCCCCccc-CcC-cCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeecccc
Confidence 3466789999999 888 66788888 788 78999999999 999999999999999999999999999999999999
Q ss_pred cccccCCCceEcccccCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHhc
Q 030162 101 HPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAG 170 (182)
Q Consensus 101 HPnI~~~G~vc~~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~ 170 (182)
|||||..|.||+|+|++.|+..|+++.||++|++||-+||.++|+|..||.+.. |+++|++.+.++..+
T Consensus 103 HPNVD~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 103 HPNVDLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE 171 (175)
T ss_pred CCCccccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999887 999999998877654
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-37 Score=232.31 Aligned_cols=144 Identities=29% Similarity=0.558 Sum_probs=129.5
Q ss_pred HHHHHHHhh-hCCCCCCCceEEccCCCCCceEEEEEE-eCCCCCCCCCEEEEEEEcCCCCCCCCCceeeecccccccccC
Q 030162 29 AGELRLHRG-SVIQPPSARFITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDL 106 (182)
Q Consensus 29 ~~~~RL~~E-~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~ 106 (182)
+.-|||..| ..|- .++..+.+ . ++++.+++|.+ ||.+|||+||++++.+.+|++||++.|.|.|.++|||||||.
T Consensus 3 ~~~rRid~Dv~KL~-~s~yeV~~-i-nd~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe 79 (189)
T KOG0416|consen 3 SGKRRIDTDVMKLL-MSDYEVTI-I-NDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDE 79 (189)
T ss_pred CcccchhhHHHHHH-hcCCeEEE-e-cCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchh
Confidence 456888888 6661 23444542 2 56799999999 999999999999999999999999999999999999999999
Q ss_pred -CCceEcccccCccCCCCCHHHHHHH-HHHhhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHhcCCCCC
Q 030162 107 -EGNVCLNILREDWKPVLNINTIIYG-LFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQ 175 (182)
Q Consensus 107 -~G~vc~~~l~~~W~p~~~i~~iL~~-i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~~ 175 (182)
+|.||+|.++..|+|.+.+..|+.. |-.||..||+.+|+|.+||.+|.+++++|++++|+++.+|+...
T Consensus 80 ~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~ 150 (189)
T KOG0416|consen 80 ASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPE 150 (189)
T ss_pred ccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChh
Confidence 9999999999999999999999987 45899999999999999999999999999999999999998755
No 16
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-36 Score=220.65 Aligned_cols=146 Identities=30% Similarity=0.519 Sum_probs=131.5
Q ss_pred HHHHHHHhh-hCCC-CCCCceEEccCCCCCceEEEEEEeCCCCCCCCCEEEEEEEcCCCCCCCCCceeeecccccccccC
Q 030162 29 AGELRLHRG-SVIQ-PPSARFITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDL 106 (182)
Q Consensus 29 ~~~~RL~~E-~~l~-~~~~~~~~~~~~~~n~~~w~~~igp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~ 106 (182)
.+.+||.+| ++|. ......=.+...++|++.|++.|-|.+-||..|.|+++|.||.+|||+||+|.|.|+|||||||+
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~llipd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLIPDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEecCCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 367999999 9982 22111112445477999999999999999999999999999999999999999999999999999
Q ss_pred CCceEccccc-CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHhcCCCC
Q 030162 107 EGNVCLNILR-EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVG 174 (182)
Q Consensus 107 ~G~vc~~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~ 174 (182)
.|.||+.++. ++|.|+++.++||..|..++.+|+++.|++.|+|..|.+|+..|.++|.+++.+++..
T Consensus 82 ~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~ 150 (153)
T KOG0422|consen 82 KGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEK 150 (153)
T ss_pred CCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCc
Confidence 9999999985 8999999999999999999999999999999999999999999999999999998754
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.3e-32 Score=202.90 Aligned_cols=144 Identities=28% Similarity=0.510 Sum_probs=133.8
Q ss_pred CCcHHHHHHHhh-hCC--CCCCCceEEccCCCCCceEEEEEE-eCCCCCCCCCEEEEEEEcCCCCCCCCCceeeeccccc
Q 030162 26 KQSAGELRLHRG-SVI--QPPSARFITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 101 (182)
Q Consensus 26 ~~s~~~~RL~~E-~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 101 (182)
-.....+.+.+| +.+ .+|.|+.| ++. ++|+...++.| ||.||||++|.|+..+.+..+||.+||+-.|+|+|||
T Consensus 7 lpp~vik~~~kEl~~l~~~PPdGIKV-~~N-eeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFH 84 (223)
T KOG0423|consen 7 LPPNVIKQLAKELKSLDESPPDGIKV-VVN-EEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFH 84 (223)
T ss_pred CChHHHHHHHHHHHhcccCCCCceEE-ecC-hHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeecc
Confidence 345667889999 999 67888888 455 78899999999 9999999999999999999999999999999999999
Q ss_pred ccccCCCceEcccccCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHhcC
Q 030162 102 PNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGG 171 (182)
Q Consensus 102 PnI~~~G~vc~~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~ 171 (182)
|||-.+|.||...|+.+|+|..+|..||..|.+||..|++++.+|++|..++.+|.++|.+.||-+..-+
T Consensus 85 PNVaaNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIH 154 (223)
T KOG0423|consen 85 PNVAANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIH 154 (223)
T ss_pred CCcccCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999886543
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-27 Score=172.05 Aligned_cols=120 Identities=21% Similarity=0.484 Sum_probs=106.3
Q ss_pred CCCcHHHHHHHhh-hCC--CCCCCceEEccCCCCCceEEEEEE-eCCCCCCCCCEEEEEEEcCCCCCCCCCceeeeccc-
Q 030162 25 KKQSAGELRLHRG-SVI--QPPSARFITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKV- 99 (182)
Q Consensus 25 ~~~s~~~~RL~~E-~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i- 99 (182)
..+..+.+||++| .++ ++|.|.... . .+|+.+|.+.+ |-+||.|+|..|.+.++||+.||+..|.|.|..++
T Consensus 11 ~ls~~at~RLqKEl~e~q~~pP~G~~~~--v-~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P 87 (161)
T KOG0427|consen 11 ALSKIATNRLQKELSEWQNNPPTGFKHR--V-TDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAP 87 (161)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcceee--c-ccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCC
Confidence 3567899999999 999 667777775 3 68999999999 99999999999999999999999999999999775
Q ss_pred ccccccCCCceEcccccCccCCCCCHHHHHHHHHHhhcC-CCCCCcccH
Q 030162 100 YHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQ-PNYEDPLNH 147 (182)
Q Consensus 100 ~HPnI~~~G~vc~~~l~~~W~p~~~i~~iL~~i~~ll~~-p~~~~p~n~ 147 (182)
.||||+.||.||+++|.++|+|++++.+|.++|.+||.+ .....|.+.
T Consensus 88 ~HPHiYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~Dn 136 (161)
T KOG0427|consen 88 LHPHIYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPTDN 136 (161)
T ss_pred CCCceecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCCcc
Confidence 699999999999999999999999999999999999985 444445443
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-26 Score=179.39 Aligned_cols=109 Identities=23% Similarity=0.514 Sum_probs=94.3
Q ss_pred CcHHHHHHHhh-hCC--CCCCCceEEccCCCCCceEEEEEE-eCCCCCCCCCEEEEEEEcCCCCCCCCCceeeecccccc
Q 030162 27 QSAGELRLHRG-SVI--QPPSARFITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHP 102 (182)
Q Consensus 27 ~s~~~~RL~~E-~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 102 (182)
+.++.+||++| +.| ++.+++.. -|. ++|+.+||.++ ||++|||+||.|+.+|.||.+||++||.|+++|| ..
T Consensus 3 ~k~a~kRl~keY~~l~k~Pv~~i~A-~P~-p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--NG 78 (244)
T KOG0894|consen 3 SKAAVKRLQKEYRALCKDPVPYIVA-RPN-PNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--NG 78 (244)
T ss_pred chHHHHHHHHHHHHHHhCCchhhcc-CCC-ccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC--CC
Confidence 45789999999 888 66677666 366 89999999999 9999999999999999999999999999999987 22
Q ss_pred cccCCCceEccccc---CccCCCCCHHHHHHHHHHhhcCC
Q 030162 103 NIDLEGNVCLNILR---EDWKPVLNINTIIYGLFHLFTQP 139 (182)
Q Consensus 103 nI~~~G~vc~~~l~---~~W~p~~~i~~iL~~i~~ll~~p 139 (182)
-+-.+.++|+++-. +.|.|++++.+||.+|.++|.+.
T Consensus 79 RFktntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~ 118 (244)
T KOG0894|consen 79 RFKTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTED 118 (244)
T ss_pred ceecCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcC
Confidence 22335589998874 78999999999999999999863
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.2e-23 Score=160.55 Aligned_cols=136 Identities=22% Similarity=0.398 Sum_probs=120.4
Q ss_pred HHHhh-hCC--CCCCCceEEccCCCCCceEEEEEEeCCCCCCCCCEEEEEEEcCCCCCC--CCCceeeecccccccccC-
Q 030162 33 RLHRG-SVI--QPPSARFITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPH--EAPKVKCKTKVYHPNIDL- 106 (182)
Q Consensus 33 RL~~E-~~l--~~~~~~~~~~~~~~~n~~~w~~~igp~~tpy~gg~f~~~i~fp~~YP~--~pP~v~f~t~i~HPnI~~- 106 (182)
-|..| ..+ ++.+|+++ +|. ..|-+.|-++|....+.|.||+|+|+|.+|++||. ..|+|.|.+.++||+|.+
T Consensus 23 ~llAEf~lV~~ekL~gIyv-iPS-yan~l~WFGViFvr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ 100 (258)
T KOG0429|consen 23 ALLAEFVLVCREKLDGIYV-IPS-YANKLLWFGVIFVRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK 100 (258)
T ss_pred HHHHHHHHHHhccCCceEE-ccc-ccccceEEEEEEEecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence 45556 444 67889999 588 77888999999777788999999999999999996 689999999999999999
Q ss_pred CCceEcccccCccCCC-CCHHHHHHHHHHhhcCCCCCCc--ccHHHHHHHHhCHHHHHHHHHHHHhc
Q 030162 107 EGNVCLNILREDWKPV-LNINTIIYGLFHLFTQPNYEDP--LNHEAAAVLRDNPKLFESNVRRAMAG 170 (182)
Q Consensus 107 ~G~vc~~~l~~~W~p~-~~i~~iL~~i~~ll~~p~~~~p--~n~~a~~~~~~~~~~f~~~~r~~~~~ 170 (182)
++.+|+......|+.. .+|+++|.+|+.+|++|+.+.+ .|++|+.+|.+++++|.++|++|+..
T Consensus 101 skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~ 167 (258)
T KOG0429|consen 101 SKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKA 167 (258)
T ss_pred ccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999998877779765 6799999999999999987765 49999999999999999999999865
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.6e-21 Score=152.79 Aligned_cols=109 Identities=21% Similarity=0.479 Sum_probs=96.2
Q ss_pred CCcHHHHHHHhh-hCCCCCCCceEEccCCCCCceEEEEEE-eCCCCCCCCCEEEEEEEcCCCCCCCCCceeeeccccccc
Q 030162 26 KQSAGELRLHRG-SVIQPPSARFITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPN 103 (182)
Q Consensus 26 ~~s~~~~RL~~E-~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 103 (182)
-.+++.|||++| ++++.|...+...|. ++|+++||++| ||.+|-|+||+|+.+|.||.+||++||.+-.+|+ +.-
T Consensus 8 ~KnpaVkRlmkEa~El~~Ptd~yha~pl-EdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGR 84 (314)
T KOG0428|consen 8 LKNPAVKRLMKEAAELKDPTDHYHAQPL-EDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGR 84 (314)
T ss_pred ccCHHHHHHHHHHHHhcCchhhhhhccc-hhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCc
Confidence 356899999999 999777777777788 89999999999 9999999999999999999999999999998887 233
Q ss_pred ccCCCceEccccc---CccCCCCCHHHHHHHHHHhhc
Q 030162 104 IDLEGNVCLNILR---EDWKPVLNINTIIYGLFHLFT 137 (182)
Q Consensus 104 I~~~G~vc~~~l~---~~W~p~~~i~~iL~~i~~ll~ 137 (182)
+..+.+||+++.. +.|-|+|+|..-|..|..+|-
T Consensus 85 FE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmP 121 (314)
T KOG0428|consen 85 FEVNKKICLSISGYHPETWQPSWSIRTALLALIGFMP 121 (314)
T ss_pred eeeCceEEEEecCCCccccCcchhHHHHHHHHHcccc
Confidence 4446789999885 789999999999999998885
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.9e-15 Score=137.33 Aligned_cols=108 Identities=25% Similarity=0.463 Sum_probs=92.3
Q ss_pred HHHHHHHhh-hCC--CCCCCceEEccCCCCCceEEEEEE-eCCCCCCCCCEEEEEEEcCCCCCCCCCceeeecc--cccc
Q 030162 29 AGELRLHRG-SVI--QPPSARFITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTK--VYHP 102 (182)
Q Consensus 29 ~~~~RL~~E-~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HP 102 (182)
..++..+.| ..+ ..|.++.+. ..++.+....+.| |+.+|||..|.|.|++.||.+||.+||.+...+. .++|
T Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~vr--~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~np 928 (1101)
T KOG0895|consen 851 QWAKKVQTEWKILPLSLPSGIFVR--AYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNP 928 (1101)
T ss_pred HHHHHHHHHHHhhhccCCCceEEE--echHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCc
Confidence 555666666 666 557777774 4477777789999 9999999999999999999999999999999875 6899
Q ss_pred cccCCCceEccccc-------CccCCCCCHHHHHHHHHHhhcC
Q 030162 103 NIDLEGNVCLNILR-------EDWKPVLNINTIIYGLFHLFTQ 138 (182)
Q Consensus 103 nI~~~G~vc~~~l~-------~~W~p~~~i~~iL~~i~~ll~~ 138 (182)
|.+.+|+||+++|+ +-|+|+-++.++|.+|+.|+-+
T Consensus 929 nly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 929 NLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred ccccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence 99999999999996 5699999999999999998764
No 23
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.4e-13 Score=99.96 Aligned_cols=107 Identities=19% Similarity=0.313 Sum_probs=85.6
Q ss_pred HHHHHhh-hCCCC---CCCceEEccCCCCC--ceEEEEEE-eCCCCCCCCCEEEEEEEcCCCCCCCCCceeeeccccccc
Q 030162 31 ELRLHRG-SVIQP---PSARFITFPNGKDD--LMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPN 103 (182)
Q Consensus 31 ~~RL~~E-~~l~~---~~~~~~~~~~~~~n--~~~w~~~i-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 103 (182)
-.||.+| ..-+. +..++....+ .+| +..|..+| ||+.|+||+.+|.++|.+.++||..||.|+|.+++--+.
T Consensus 7 nfrlleele~g~kg~g~~~~s~gl~d-~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~g 85 (138)
T KOG0896|consen 7 NFRLLEELEEGEKGIGDGTVSWGLED-DDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNG 85 (138)
T ss_pred chhhhhhhccccccccCceeeccccC-CCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecc
Confidence 3467777 44422 3344554444 344 56899999 999999999999999999999999999999999999999
Q ss_pred ccC-CCceEccccc--CccCCCCCHHHHHHHHHHhhcC
Q 030162 104 IDL-EGNVCLNILR--EDWKPVLNINTIIYGLFHLFTQ 138 (182)
Q Consensus 104 I~~-~G~vc~~~l~--~~W~p~~~i~~iL~~i~~ll~~ 138 (182)
|+. +|.|.-..+. .+|.-.++++.+|..+..+|..
T Consensus 86 vn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 86 VNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMS 123 (138)
T ss_pred cccCCCccCccccchhhcccccchhhHHHHhhhHHHHH
Confidence 988 7787764443 7999999999999999976643
No 24
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.8e-13 Score=126.59 Aligned_cols=116 Identities=24% Similarity=0.483 Sum_probs=101.9
Q ss_pred CCCCCCcHHHHHHHhh-hCC--CCCCCceEEccCCCCCceEEEEEE-eCCCCCCCCCEEEEEEEcCCCCCCCCCceeeec
Q 030162 22 TPVKKQSAGELRLHRG-SVI--QPPSARFITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKT 97 (182)
Q Consensus 22 ~~~~~~s~~~~RL~~E-~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 97 (182)
+....+....+|+++| +-+ +.+.++.+. +. +..+...++.| |+.+|||++|+|.|.|.||..||..||.+.++|
T Consensus 275 ~~k~hs~~~skrv~ke~~llskdlpEgifvr-p~-e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt 352 (1101)
T KOG0895|consen 275 SSKPHSKNWSKKVAKELKLLSKDLPEGIFVR-PD-EGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLT 352 (1101)
T ss_pred CCCccchhhHHHHHHHhhhhcccCCCCcccc-cc-ccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEee
Confidence 3445677889999999 888 667887774 66 67888899999 999999999999999999999999999999998
Q ss_pred c---cccccccCCCceEccccc-------CccCCC-CCHHHHHHHHHHhhcCC
Q 030162 98 K---VYHPNIDLEGNVCLNILR-------EDWKPV-LNINTIIYGLFHLFTQP 139 (182)
Q Consensus 98 ~---i~HPnI~~~G~vc~~~l~-------~~W~p~-~~i~~iL~~i~~ll~~p 139 (182)
. .+.||.+.+|+||+++|. +.|+|. .+|.++|..|+.++.+-
T Consensus 353 ~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 353 GGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred ccceeecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 7 689999999999999883 579998 88999999999998853
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.5e-07 Score=66.76 Aligned_cols=93 Identities=17% Similarity=0.362 Sum_probs=67.8
Q ss_pred EEEEEEcCCCCCCCCCceeeeccccccccc-----CCCceEccccc-CccCCCCCHHHHHHHHHHhhcCCC--CCCcccH
Q 030162 76 FVFTFQVSPIYPHEAPKVKCKTKVYHPNID-----LEGNVCLNILR-EDWKPVLNINTIIYGLFHLFTQPN--YEDPLNH 147 (182)
Q Consensus 76 f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~-----~~G~vc~~~l~-~~W~p~~~i~~iL~~i~~ll~~p~--~~~p~n~ 147 (182)
.-+.+.|+++||+.||.+|.. +|+++ .+|.||+.++. ++|+.+++++.++.+|-..+.... ...+++.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv----~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k 88 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVV----KPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEK 88 (122)
T ss_pred eEeeeecccCCCCCCCcceee----eecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcch
Confidence 456788999999999999854 55555 48999999995 789999999999999999998754 3345544
Q ss_pred HHHHHHHh--CHHHHHHHHHHHHhcCCC
Q 030162 148 EAAAVLRD--NPKLFESNVRRAMAGGYV 173 (182)
Q Consensus 148 ~a~~~~~~--~~~~f~~~~r~~~~~~~~ 173 (182)
+-. +|.. -.+.|+..++..-.-++.
T Consensus 89 ~sk-~~s~~qa~~sfksLv~~heksg~~ 115 (122)
T KOG0897|consen 89 SSK-LYSHSQAQQSFKSLVQIHEKSGWV 115 (122)
T ss_pred hhh-HhhHHHHHHHHHHHHHHHHhcCCc
Confidence 433 4544 335666666665555543
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.56 E-value=2e-07 Score=69.09 Aligned_cols=67 Identities=21% Similarity=0.478 Sum_probs=60.8
Q ss_pred CCCEEEEEEEcCCCCCCCCCceeeeccc---ccccccCCCceEc---ccccCccCCCCCHHHHHHHHHHhhcC
Q 030162 72 VGGTFVFTFQVSPIYPHEAPKVKCKTKV---YHPNIDLEGNVCL---NILREDWKPVLNINTIIYGLFHLFTQ 138 (182)
Q Consensus 72 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPnI~~~G~vc~---~~l~~~W~p~~~i~~iL~~i~~ll~~ 138 (182)
.|+.+.+.|.+|+.||..||.|....+. +=|||+.+|.+|+ ...-+.|.|.-.+.++|.....+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988654 6899999999999 66668899999999999999999984
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.18 E-value=5.2e-06 Score=60.60 Aligned_cols=79 Identities=24% Similarity=0.415 Sum_probs=53.6
Q ss_pred CceEEEEEEeCCCCCCCCCEE--EEEEEcCCCCCCCCCceeeecccc-----cccccCCCceEcccccCccCC-CCCHHH
Q 030162 56 DLMNFEVSIRPDEGYYVGGTF--VFTFQVSPIYPHEAPKVKCKTKVY-----HPNIDLEGNVCLNILREDWKP-VLNINT 127 (182)
Q Consensus 56 n~~~w~~~igp~~tpy~gg~f--~~~i~fp~~YP~~pP~v~f~t~i~-----HPnI~~~G~vc~~~l~~~W~p-~~~i~~ 127 (182)
.+....++| .-.|+|..| .+.|.+|.+||..||.+....... +.+||.+|+|.+..|. +|.+ ..++.+
T Consensus 31 ~LL~L~Gti---pi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~-~W~~~~s~L~~ 106 (121)
T PF05743_consen 31 LLLCLYGTI---PITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQ-NWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEE---EECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHH-T--TTTS-HHH
T ss_pred eEEEEecCc---ccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhc-cCCCCCCCHHH
Confidence 344455555 223777767 678889999999999998864322 4499999999998884 7866 788999
Q ss_pred HHHHHHHhhcC
Q 030162 128 IIYGLFHLFTQ 138 (182)
Q Consensus 128 iL~~i~~ll~~ 138 (182)
++..+...|.+
T Consensus 107 lv~~l~~~F~~ 117 (121)
T PF05743_consen 107 LVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHCCCH
T ss_pred HHHHHHHHHhH
Confidence 99999888763
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.00052 Score=57.64 Aligned_cols=75 Identities=23% Similarity=0.365 Sum_probs=59.4
Q ss_pred eCCCCCCCCCEE--EEEEEcCCCCCCCCCceeeecc-----cccccccCCCceEcccccCccC-CCCCHHHHHHHHHHhh
Q 030162 65 RPDEGYYVGGTF--VFTFQVSPIYPHEAPKVKCKTK-----VYHPNIDLEGNVCLNILREDWK-PVLNINTIIYGLFHLF 136 (182)
Q Consensus 65 gp~~tpy~gg~f--~~~i~fp~~YP~~pP~v~f~t~-----i~HPnI~~~G~vc~~~l~~~W~-p~~~i~~iL~~i~~ll 136 (182)
|-.-.+|.|..| .+.|.+.+.||..||.+..... --|-|||.+|.|.+..|. +|. |+.++..++..|...|
T Consensus 57 GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv~Liq~l~a~f 135 (365)
T KOG2391|consen 57 GTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH-NWDPPSSDLVGLIQELIAAF 135 (365)
T ss_pred CcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc-cCCCccchHHHHHHHHHHHh
Confidence 444456777776 5778899999999999866522 139999999999999996 675 5688999999999999
Q ss_pred cCCC
Q 030162 137 TQPN 140 (182)
Q Consensus 137 ~~p~ 140 (182)
.++.
T Consensus 136 ~~~p 139 (365)
T KOG2391|consen 136 SEDP 139 (365)
T ss_pred cCCC
Confidence 8754
No 29
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=96.13 E-value=0.0097 Score=44.21 Aligned_cols=99 Identities=14% Similarity=0.204 Sum_probs=46.5
Q ss_pred CcHHHHHHHhh-hCC-C------CCCCceEEccCCCCCceEEEEEE-eC-CCCCCCCCEEEEEEEcCCCCCCCCCceeee
Q 030162 27 QSAGELRLHRG-SVI-Q------PPSARFITFPNGKDDLMNFEVSI-RP-DEGYYVGGTFVFTFQVSPIYPHEAPKVKCK 96 (182)
Q Consensus 27 ~s~~~~RL~~E-~~l-~------~~~~~~~~~~~~~~n~~~w~~~i-gp-~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~ 96 (182)
......||..| ..| . ....-++.+.. +.+=+.|.+.- .- ..-- -.|.+++.+|..||..||.|..-
T Consensus 22 ~~~W~~RLKEEy~aLI~Yv~~nK~~DndWF~les-n~~GT~W~GkCW~~h~l~k---YEF~~eFdIP~tYP~t~pEi~lP 97 (161)
T PF08694_consen 22 GDLWVQRLKEEYQALIKYVENNKENDNDWFRLES-NKEGTRWFGKCWYIHNLLK---YEFDLEFDIPVTYPTTAPEIALP 97 (161)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTT---EEEEE--TTSSEEEEEEEEEETTEE---EEEEEEEE--TTTTTS----B-G
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCeEEecc-CCCCCccccEEEEEeeeee---EEEeeecCCCccCCCCCcceecc
Confidence 36889999999 776 1 11222233233 23334555544 22 1111 24677888999999999999764
Q ss_pred ccc-ccccccCCCceEccccc-Ccc---CCCCCHHHHH
Q 030162 97 TKV-YHPNIDLEGNVCLNILR-EDW---KPVLNINTII 129 (182)
Q Consensus 97 t~i-~HPnI~~~G~vc~~~l~-~~W---~p~~~i~~iL 129 (182)
.-- -..-.+..|+||++.=. .-| .|.++|...|
T Consensus 98 eLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 98 ELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp GGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred ccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 210 12234568999997543 446 5667776554
No 30
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=94.92 E-value=0.18 Score=34.89 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=22.7
Q ss_pred CCCEEEEEEEcCCCCCCCCCceeeecc
Q 030162 72 VGGTFVFTFQVSPIYPHEAPKVKCKTK 98 (182)
Q Consensus 72 ~gg~f~~~i~fp~~YP~~pP~v~f~t~ 98 (182)
..-.+.+.+.||++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999987654
No 31
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=94.62 E-value=0.061 Score=41.18 Aligned_cols=62 Identities=21% Similarity=0.380 Sum_probs=49.0
Q ss_pred EEEEEcCCCCCCCCCceeeecccc---cccccCC-----CceEccccc-CccCCCCCHHHHHHHHHHhhcC
Q 030162 77 VFTFQVSPIYPHEAPKVKCKTKVY---HPNIDLE-----GNVCLNILR-EDWKPVLNINTIIYGLFHLFTQ 138 (182)
Q Consensus 77 ~~~i~fp~~YP~~pP~v~f~t~i~---HPnI~~~-----G~vc~~~l~-~~W~p~~~i~~iL~~i~~ll~~ 138 (182)
.+.|.|+.+||..+|.+.++-..| +||++.. ..+|+..-. ..|.+..++..+|..|..-|.+
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 467899999999999877765433 6888775 679985443 5799999999999999988764
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=94.18 E-value=0.48 Score=34.57 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=51.4
Q ss_pred ceEEEEEE--eCCCCCCCCCEEEEEEEcCCCCCCCCCceeeecccccccccCCCce--Ecccc--------------cCc
Q 030162 57 LMNFEVSI--RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNV--CLNIL--------------RED 118 (182)
Q Consensus 57 ~~~w~~~i--gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~G~v--c~~~l--------------~~~ 118 (182)
-..|.++= ..+.+.|.+..-.+-|.+|..||..+|...+..|-.... ..|.+ |-+.. ...
T Consensus 23 ~~~~lii~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~~wQrWSRH~~~ 100 (122)
T PF14462_consen 23 GRRWLIIKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGRTWQRWSRHNNP 100 (122)
T ss_pred CccEEEEeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCeeeeeecCCCCC
Confidence 34566644 457778999999999999999999988776654432111 01222 22211 135
Q ss_pred cCCCC-CHHHHHHHHHHhhc
Q 030162 119 WKPVL-NINTIIYGLFHLFT 137 (182)
Q Consensus 119 W~p~~-~i~~iL~~i~~ll~ 137 (182)
|.|.. ++.+.|..|...|.
T Consensus 101 W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 101 WRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred CCCCCCcHHHHHHHHHHHHh
Confidence 88864 58888888877663
No 33
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=93.68 E-value=0.22 Score=34.71 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=27.9
Q ss_pred CceEEEEEE-e--CCCCCCCCCEEEEEEEcCCCCCCCCCceeeeccc
Q 030162 56 DLMNFEVSI-R--PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKV 99 (182)
Q Consensus 56 n~~~w~~~i-g--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 99 (182)
+...+.+.+ . ...+.-....+.+.+.||++||..+|.|...+..
T Consensus 28 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 28 SPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp SSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred CCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 344455555 1 2333444568999999999999999999877653
No 34
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=78.96 E-value=3.1 Score=34.82 Aligned_cols=87 Identities=16% Similarity=0.272 Sum_probs=55.7
Q ss_pred cHHHHHHHhh-hCCCCCCCceEEccCCCCCceEEEEEEeCCCCCCCCCEEEEEEEcCCCCCCCCCceeeecccccccccC
Q 030162 28 SAGELRLHRG-SVIQPPSARFITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDL 106 (182)
Q Consensus 28 s~~~~RL~~E-~~l~~~~~~~~~~~~~~~n~~~w~~~igp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~ 106 (182)
+....+|.+| ..+.....+.+.+ ++++...++.+... .....++|.+|.+||.++|.+...-++
T Consensus 98 ~~~ys~ll~EIe~IGW~kl~~i~~---d~~ls~i~l~~~D~-----~R~H~l~l~l~~~yp~~~p~~~~~~P~------- 162 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGWDKLVQIQF---DDDLSTIKLKIFDS-----SRQHYLELKLPSNYPFEPPSCSLDLPI------- 162 (291)
T ss_dssp -GGC-CHHHHHHHHHCGCCEEEEE----CCCSEEEEEEETT-----CEEEEEEEETTTTTTTSEEEECS-TTS-------
T ss_pred cHHHHHHHHHHHHhccccceEEec---CCCccEEEEEEEcC-----CceEEEEEEECCCCCCCCceeeCCCCc-------
Confidence 5567788899 8885555666642 45777777777332 156789999999999999975432221
Q ss_pred CCceEcccccCccCC-CCCHHHHHHHHHHhh
Q 030162 107 EGNVCLNILREDWKP-VLNINTIIYGLFHLF 136 (182)
Q Consensus 107 ~G~vc~~~l~~~W~p-~~~i~~iL~~i~~ll 136 (182)
.+...|.+ ..++.+++...+..+
T Consensus 163 -------~~~~~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 163 -------PFSLSWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp --------HHHHHHCHT-SHHHHHHHHHHHH
T ss_pred -------chhhhhcccccCHHHHHHHHHHHH
Confidence 11247888 778877777666554
No 35
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.17 E-value=6.9 Score=28.82 Aligned_cols=96 Identities=18% Similarity=0.332 Sum_probs=53.5
Q ss_pred CCcHHHHHHHhh-hCCCCCCCceEEccCCCCCceEEEEEE-eCCCCCCCCC----------EEEEEEEcCCCCCCCCCce
Q 030162 26 KQSAGELRLHRG-SVIQPPSARFITFPNGKDDLMNFEVSI-RPDEGYYVGG----------TFVFTFQVSPIYPHEAPKV 93 (182)
Q Consensus 26 ~~s~~~~RL~~E-~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v 93 (182)
.-....+||..| +.|-. ++ ..+.++-..|.-.- -+.||-|-|. .|.+++.+|-.||..+|.|
T Consensus 24 d~~~wvqrlkeey~sli~----yv--qnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapei 97 (167)
T KOG3357|consen 24 DGDLWVQRLKEEYQSLIA----YV--QNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEI 97 (167)
T ss_pred cchHHHHHHHHHHHHHHH----HH--HhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccc
Confidence 455678999999 77700 01 01011112232222 4566666663 4566777899999999998
Q ss_pred eeeccc-ccccccCCCceEcc-cccCccC---CCCCHHH
Q 030162 94 KCKTKV-YHPNIDLEGNVCLN-ILREDWK---PVLNINT 127 (182)
Q Consensus 94 ~f~t~i-~HPnI~~~G~vc~~-~l~~~W~---p~~~i~~ 127 (182)
..-.-- -.-..+..|+||+. .++.-|. |.++|..
T Consensus 98 alpeldgktakmyrggkiclt~hfkplwarn~pkfgiah 136 (167)
T KOG3357|consen 98 ALPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAH 136 (167)
T ss_pred cccccCchhhhhhcCceEeeccccchhhhhcCcchhHHH
Confidence 643100 01123457999984 4455573 4455543
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=76.32 E-value=4.5 Score=32.27 Aligned_cols=20 Identities=35% Similarity=0.873 Sum_probs=18.7
Q ss_pred EEEEEEEcCCCCCCCCCcee
Q 030162 75 TFVFTFQVSPIYPHEAPKVK 94 (182)
Q Consensus 75 ~f~~~i~fp~~YP~~pP~v~ 94 (182)
.+.+.+.++++||..+|-|.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred cEEEEEEccCCCCCCCccee
Confidence 88899999999999999994
No 37
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=64.04 E-value=24 Score=33.55 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=26.8
Q ss_pred EEEEEE-eCCCCCCCCCEE-EEEEEcCCCCCCC-CCceeeecc
Q 030162 59 NFEVSI-RPDEGYYVGGTF-VFTFQVSPIYPHE-APKVKCKTK 98 (182)
Q Consensus 59 ~w~~~i-gp~~tpy~gg~f-~~~i~fp~~YP~~-pP~v~f~t~ 98 (182)
.-.+.+ +|-. +-.|-+| ++.|.||.+||.+ +|.++|..+
T Consensus 450 sctvsln~p~~-~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 450 SCTVSLNCPNH-RVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred eEEEEecCCCC-ccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 345556 5432 2344444 8999999999994 799999754
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=62.15 E-value=21 Score=30.44 Aligned_cols=65 Identities=22% Similarity=0.354 Sum_probs=42.5
Q ss_pred eEEEEEEeCCCCCCCCCEEEEEEEcCCCCCCCCCceeee-cccccccccCCCceEcccccCccCCCC--CHHHHHHHHH
Q 030162 58 MNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCK-TKVYHPNIDLEGNVCLNILREDWKPVL--NINTIIYGLF 133 (182)
Q Consensus 58 ~~w~~~igp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~-t~i~HPnI~~~G~vc~~~l~~~W~p~~--~i~~iL~~i~ 133 (182)
..+.+.| ||.|-..+-+|.|...||..||-+.|. ..-|+|-... +..+ .+|.+.- ++..++..|.
T Consensus 54 DRF~l~I-----Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~-----l~~L-~~Wd~~dp~~Ll~li~EL~ 121 (333)
T PF06113_consen 54 DRFKLLI-----PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSK-----LPSL-VNWDPSDPNCLLNLISELR 121 (333)
T ss_pred ceEEEEe-----eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhh-----cchh-hcCCCCCchHHHHHHHHHH
Confidence 3455554 688889999999999999999999996 3347774311 1111 4787653 3444444443
No 39
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=62.08 E-value=13 Score=28.59 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=24.8
Q ss_pred eccccc---ccccCCCceEcccccCccCCCCCHHHHHHHHHHhhcC
Q 030162 96 KTKVYH---PNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQ 138 (182)
Q Consensus 96 ~t~i~H---PnI~~~G~vc~~~l~~~W~p~~~i~~iL~~i~~ll~~ 138 (182)
.|+.|| +||..+|.||..... .|.......+..+...+.+
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~ 131 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFN 131 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhC
Confidence 355666 488889999997643 3444444556666554443
No 40
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=46.86 E-value=32 Score=27.84 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=26.4
Q ss_pred cccccc---cccCCCceEcccccCccCCC-CCHHHHHHHHHHhhcCC
Q 030162 97 TKVYHP---NIDLEGNVCLNILREDWKPV-LNINTIIYGLFHLFTQP 139 (182)
Q Consensus 97 t~i~HP---nI~~~G~vc~~~l~~~W~p~-~~i~~iL~~i~~ll~~p 139 (182)
|+.||+ ||+.+|+||+.... .|. .++.+ +......|.+-
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S 173 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSS 173 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCC
Confidence 456654 88889999997654 454 45566 77777766653
No 41
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=41.73 E-value=35 Score=25.28 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=21.8
Q ss_pred CCEEEEEEEcCCCCC-CCCCceeee
Q 030162 73 GGTFVFTFQVSPIYP-HEAPKVKCK 96 (182)
Q Consensus 73 gg~f~~~i~fp~~YP-~~pP~v~f~ 96 (182)
.|.|.|.-.+|-.|| ..||.|.|.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 389999999999999 999999876
No 42
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=41.09 E-value=25 Score=32.17 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=24.9
Q ss_pred CCCCCCCEEEEEEEcCCCCCC---CCCceeeecc
Q 030162 68 EGYYVGGTFVFTFQVSPIYPH---EAPKVKCKTK 98 (182)
Q Consensus 68 ~tpy~gg~f~~~i~fp~~YP~---~pP~v~f~t~ 98 (182)
.+||.=|.|-+ +.+|++||+ +-|.++|+|+
T Consensus 247 ~GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 247 FGPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred cCCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 45777788875 568999999 6799999988
No 43
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=40.17 E-value=38 Score=26.48 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.9
Q ss_pred CCEEEEEEEcCCCCCCCCCceeee
Q 030162 73 GGTFVFTFQVSPIYPHEAPKVKCK 96 (182)
Q Consensus 73 gg~f~~~i~fp~~YP~~pP~v~f~ 96 (182)
.|.|.|.=.+|--||..+|.|-|.
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEE
Confidence 489999999999999999999886
No 44
>PRK05414 urocanate hydratase; Provisional
Probab=38.36 E-value=65 Score=29.32 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.3
Q ss_pred cHHHHHHHHhCHHHHHHHHHHHHhcC
Q 030162 146 NHEAAAVLRDNPKLFESNVRRAMAGG 171 (182)
Q Consensus 146 n~~a~~~~~~~~~~f~~~~r~~~~~~ 171 (182)
-.|+..+...||+.|.+.|+++++++
T Consensus 281 ~ee~~~lr~~dp~~~~~~~~~Sm~rh 306 (556)
T PRK05414 281 LEEAAELRAEDPEEFVKAAKASMARH 306 (556)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 45788888999999999999998764
No 45
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=35.10 E-value=45 Score=28.55 Aligned_cols=24 Identities=17% Similarity=0.490 Sum_probs=21.3
Q ss_pred EEEEEEEcCCCCCCCCCceeeecc
Q 030162 75 TFVFTFQVSPIYPHEAPKVKCKTK 98 (182)
Q Consensus 75 ~f~~~i~fp~~YP~~pP~v~f~t~ 98 (182)
.|-+.|.+|..||...|.++|.+-
T Consensus 307 ~flvHi~Lp~~FP~~qP~ltlqS~ 330 (333)
T PF06113_consen 307 TFLVHISLPIQFPKDQPSLTLQSV 330 (333)
T ss_pred EEEEEEeccCCCCCcCCeEEEEee
Confidence 478889999999999999999863
No 46
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=34.94 E-value=84 Score=28.51 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=22.2
Q ss_pred cHHHHHHHHhCHHHHHHHHHHHHhcC
Q 030162 146 NHEAAAVLRDNPKLFESNVRRAMAGG 171 (182)
Q Consensus 146 n~~a~~~~~~~~~~f~~~~r~~~~~~ 171 (182)
-.|+..+...||+.|.+.|+++++++
T Consensus 272 ~ee~~~lr~~dp~~~~~~~~~Sm~rh 297 (545)
T TIGR01228 272 VEDADKLRQEEPEAYVKAAKQSMAKH 297 (545)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 45788888899999999999998764
No 47
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=33.22 E-value=58 Score=24.65 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=21.5
Q ss_pred CCEEEEEEEcCCCCC-----CCCCceeee
Q 030162 73 GGTFVFTFQVSPIYP-----HEAPKVKCK 96 (182)
Q Consensus 73 gg~f~~~i~fp~~YP-----~~pP~v~f~ 96 (182)
.|.|.|.-.+|--|| ..||.|.|.
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 389999999999999 899999876
No 48
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=31.77 E-value=50 Score=20.78 Aligned_cols=19 Identities=21% Similarity=0.581 Sum_probs=12.3
Q ss_pred ccCCCCCHHHHHHHHHHhh
Q 030162 118 DWKPVLNINTIIYGLFHLF 136 (182)
Q Consensus 118 ~W~p~~~i~~iL~~i~~ll 136 (182)
+|.|.++|.++|.......
T Consensus 37 gW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp ----SSSHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHH
Confidence 7999999999998876543
No 49
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=31.56 E-value=55 Score=27.76 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.8
Q ss_pred CEEEEEEEcCCCCCCCCCceeeecc
Q 030162 74 GTFVFTFQVSPIYPHEAPKVKCKTK 98 (182)
Q Consensus 74 g~f~~~i~fp~~YP~~pP~v~f~t~ 98 (182)
-.+.+.+..++.||...|.|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 6788999999999999999999876
No 50
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=31.48 E-value=51 Score=26.27 Aligned_cols=55 Identities=20% Similarity=0.399 Sum_probs=44.5
Q ss_pred CCCCceeeecccccccccC--CCceEcccccCcc--CCCCCHHHHHHHHHHhhcCCCCC
Q 030162 88 HEAPKVKCKTKVYHPNIDL--EGNVCLNILREDW--KPVLNINTIIYGLFHLFTQPNYE 142 (182)
Q Consensus 88 ~~pP~v~f~t~i~HPnI~~--~G~vc~~~l~~~W--~p~~~i~~iL~~i~~ll~~p~~~ 142 (182)
..||.|-|-.+.|...||- -|.|--.+.+.+| -|+-++.+-|..|..++-.|+.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 4799999999999999985 4655556666777 68889999999999999887654
No 51
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=26.93 E-value=67 Score=25.29 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=21.0
Q ss_pred CCceEcccccCccCCCCCHHHHHHHHH
Q 030162 107 EGNVCLNILREDWKPVLNINTIIYGLF 133 (182)
Q Consensus 107 ~G~vc~~~l~~~W~p~~~i~~iL~~i~ 133 (182)
.+.+|++++...|+|.+|.+.-+.-++
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmk 161 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMK 161 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHH
Confidence 457999999999999999765544444
No 52
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=26.03 E-value=1.3e+02 Score=20.69 Aligned_cols=26 Identities=8% Similarity=0.018 Sum_probs=20.1
Q ss_pred CCCCEEEEEEEcCCCCCCCCCceeeecc
Q 030162 71 YVGGTFVFTFQVSPIYPHEAPKVKCKTK 98 (182)
Q Consensus 71 y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 98 (182)
-+|.-+.|...-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 45777778777789999 588888865
No 53
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=25.77 E-value=82 Score=28.66 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=21.9
Q ss_pred cHHHHHHHHhCHHHHHHHHHHHHhcC
Q 030162 146 NHEAAAVLRDNPKLFESNVRRAMAGG 171 (182)
Q Consensus 146 n~~a~~~~~~~~~~f~~~~r~~~~~~ 171 (182)
-.|+..+...||+.|.+.++++++++
T Consensus 271 ~eea~~l~~~dp~~~~~~v~~Sl~rh 296 (546)
T PF01175_consen 271 FEEANELRAEDPEEFKERVQESLARH 296 (546)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 35778888899999999999998764
No 54
>PF12884 TORC_N: Transducer of regulated CREB activity, N terminus; InterPro: IPR024783 This entry represents the N-terminal domain of TORC proteins. TORC (transducer of regulated CREB activity) is a protein family of coactivators that enhances the activity of CRE-dependent transcription via a phosphorylation-independent interaction with the bZIP DNA binding/dimerisation domain of CREB (cAMP Response Element-Binding) []. The proteins display a highly conserved predicted N-terminal coiled-coil domain and an invariant sequence matching a protein kinase A (PKA) phosphorylation consensus sequence (RKXS) []. The coiled-coil structure interacts with the bZIP domain of CREB []. This interaction may occur via ionic bonds because it is disrupted under high-salt conditions []. In addition to CREB-binding, the N-terminal domain plays a role in the tetramer formation of TORCs [], but the physiological function of the multimeric complex has not been clarified yet.; GO: 0008140 cAMP response element binding protein binding, 0051289 protein homotetramerization
Probab=24.65 E-value=17 Score=23.55 Aligned_cols=10 Identities=20% Similarity=0.375 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 030162 158 KLFESNVRRA 167 (182)
Q Consensus 158 ~~f~~~~r~~ 167 (182)
..|++..++.
T Consensus 21 aaFE~iM~ev 30 (67)
T PF12884_consen 21 AAFEEIMKEV 30 (67)
T ss_pred HHHHHHHHHH
Confidence 3454444443
No 55
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=21.42 E-value=1.2e+02 Score=23.84 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=20.2
Q ss_pred CCEEEEEEEcCCCCCC-----CCCceeee
Q 030162 73 GGTFVFTFQVSPIYPH-----EAPKVKCK 96 (182)
Q Consensus 73 gg~f~~~i~fp~~YP~-----~pP~v~f~ 96 (182)
.|.|.|.-..|-.||. .||.|-|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3889999999999998 78877665
No 56
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=21.22 E-value=1.6e+02 Score=19.79 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=19.4
Q ss_pred cHHHHHHHHhCHHHHHHHHHHHHhc
Q 030162 146 NHEAAAVLRDNPKLFESNVRRAMAG 170 (182)
Q Consensus 146 n~~a~~~~~~~~~~f~~~~r~~~~~ 170 (182)
-.+...++++||++|+...++.+..
T Consensus 6 FD~L~~LA~~dPe~fe~lr~~~~ee 30 (83)
T PF11333_consen 6 FDELKELAQNDPEAFEQLRQELIEE 30 (83)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3467788999999999877766544
No 57
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=21.01 E-value=1.9e+02 Score=26.12 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.1
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHhcC
Q 030162 147 HEAAAVLRDNPKLFESNVRRAMAGG 171 (182)
Q Consensus 147 ~~a~~~~~~~~~~f~~~~r~~~~~~ 171 (182)
.++..+-..|++.|.+.|+..++.+
T Consensus 282 ee~~~lr~~d~~~~~~~a~~sm~~h 306 (561)
T COG2987 282 EEADELREEDPDKYRKLARASMARH 306 (561)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 5777788889999999999988764
No 58
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=20.57 E-value=2.8e+02 Score=18.58 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=26.7
Q ss_pred eEEEEEE-eCCCCCCCCCEEEEEEEcCCCCCCCCCceeeeccccc
Q 030162 58 MNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 101 (182)
Q Consensus 58 ~~w~~~i-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 101 (182)
++|.+-+ ++.+.--..-+=++...+.+.|+. |...+..+.|.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFe 44 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFE 44 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCE
Confidence 6799999 776654444555788888888876 66666665443
Done!