Query 030165
Match_columns 182
No_of_seqs 219 out of 1864
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 09:33:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 100.0 1.4E-31 3.1E-36 197.5 13.3 108 75-182 42-149 (150)
2 PRK10996 thioredoxin 2; Provis 100.0 3.4E-28 7.5E-33 180.6 17.1 138 31-181 2-139 (139)
3 cd03065 PDI_b_Calsequestrin_N 99.9 5.5E-27 1.2E-31 169.7 13.2 107 75-182 8-120 (120)
4 cd02954 DIM1 Dim1 family; Dim1 99.9 7.6E-26 1.7E-30 161.9 11.1 88 83-170 2-90 (114)
5 PHA02278 thioredoxin-like prot 99.9 2.3E-25 5.1E-30 157.4 13.0 94 82-176 3-100 (103)
6 cd03006 PDI_a_EFP1_N PDIa fami 99.9 2.2E-25 4.9E-30 159.9 12.2 102 76-177 9-113 (113)
7 PF00085 Thioredoxin: Thioredo 99.9 1E-24 2.2E-29 151.9 14.9 103 78-180 1-103 (103)
8 COG3118 Thioredoxin domain-con 99.9 2.3E-25 5.1E-30 180.4 11.4 106 76-181 23-130 (304)
9 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 7.9E-25 1.7E-29 154.0 11.8 101 77-177 2-104 (104)
10 PRK09381 trxA thioredoxin; Pro 99.9 3.1E-24 6.8E-29 152.3 14.4 108 75-182 2-109 (109)
11 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 9.6E-25 2.1E-29 153.0 11.5 99 77-176 2-100 (101)
12 cd02956 ybbN ybbN protein fami 99.9 6.3E-24 1.4E-28 147.2 12.5 94 85-178 2-96 (96)
13 cd02985 TRX_CDSP32 TRX family, 99.9 1.5E-23 3.2E-28 148.0 13.4 96 82-179 2-101 (103)
14 cd02963 TRX_DnaJ TRX domain, D 99.9 7.9E-24 1.7E-28 151.3 12.1 102 79-180 7-111 (111)
15 cd02948 TRX_NDPK TRX domain, T 99.9 1.9E-23 4.1E-28 147.1 13.5 97 81-180 5-102 (102)
16 KOG0907 Thioredoxin [Posttrans 99.9 9.2E-24 2E-28 149.7 11.3 89 90-180 17-105 (106)
17 PLN00410 U5 snRNP protein, DIM 99.9 3.2E-23 7E-28 153.6 13.5 101 81-181 9-120 (142)
18 cd02965 HyaE HyaE family; HyaE 99.9 3.2E-23 6.9E-28 147.5 12.2 98 77-175 11-110 (111)
19 cd02996 PDI_a_ERp44 PDIa famil 99.9 4.3E-23 9.3E-28 146.3 11.9 100 77-177 2-108 (108)
20 cd03002 PDI_a_MPD1_like PDI fa 99.9 6.1E-23 1.3E-27 145.2 11.7 101 78-178 2-109 (109)
21 cd03005 PDI_a_ERp46 PDIa famil 99.9 1.4E-22 3.1E-27 141.4 12.5 98 78-177 2-102 (102)
22 cd02994 PDI_a_TMX PDIa family, 99.9 2E-22 4.2E-27 141.0 12.5 99 77-179 2-101 (101)
23 TIGR01068 thioredoxin thioredo 99.9 4.6E-22 9.9E-27 137.9 13.4 101 81-181 1-101 (101)
24 cd03001 PDI_a_P5 PDIa family, 99.9 3.2E-22 6.9E-27 139.8 12.4 100 78-177 2-102 (103)
25 PTZ00443 Thioredoxin domain-co 99.9 3.5E-22 7.6E-27 158.9 13.9 107 75-181 29-139 (224)
26 cd02989 Phd_like_TxnDC9 Phosdu 99.9 5.4E-22 1.2E-26 142.4 13.6 91 76-168 4-95 (113)
27 cd02999 PDI_a_ERp44_like PDIa 99.9 1.4E-22 3E-27 142.4 10.1 84 92-177 16-100 (100)
28 cd02957 Phd_like Phosducin (Ph 99.9 7.2E-23 1.6E-27 146.7 8.5 91 76-168 4-96 (113)
29 cd02950 TxlA TRX-like protein 99.9 8E-22 1.7E-26 146.9 13.2 99 83-182 10-111 (142)
30 cd02997 PDI_a_PDIR PDIa family 99.9 1.1E-21 2.3E-26 137.3 12.4 99 78-177 2-104 (104)
31 cd02986 DLP Dim1 family, Dim1- 99.9 1.8E-21 3.9E-26 138.6 13.0 98 83-180 2-110 (114)
32 TIGR01126 pdi_dom protein disu 99.9 1.6E-21 3.5E-26 135.6 11.6 100 81-181 1-102 (102)
33 cd02949 TRX_NTR TRX domain, no 99.9 3.5E-21 7.7E-26 134.1 12.8 93 86-178 5-97 (97)
34 cd02984 TRX_PICOT TRX domain, 99.9 3.4E-21 7.4E-26 133.4 12.4 95 82-177 1-96 (97)
35 cd02962 TMX2 TMX2 family; comp 99.9 3.5E-21 7.5E-26 144.8 13.4 91 76-166 28-126 (152)
36 cd02995 PDI_a_PDI_a'_C PDIa fa 99.9 2.7E-21 5.8E-26 135.1 10.9 99 78-177 2-104 (104)
37 cd02998 PDI_a_ERp38 PDIa famil 99.9 3E-21 6.5E-26 134.9 10.7 100 78-177 2-105 (105)
38 cd02987 Phd_like_Phd Phosducin 99.9 7.5E-21 1.6E-25 146.3 13.1 103 75-179 61-173 (175)
39 cd02953 DsbDgamma DsbD gamma f 99.9 3.1E-21 6.7E-26 135.8 9.3 94 84-178 2-104 (104)
40 cd02975 PfPDO_like_N Pyrococcu 99.8 1.8E-20 3.9E-25 134.5 11.6 91 91-182 19-111 (113)
41 PTZ00051 thioredoxin; Provisio 99.8 3.3E-20 7.2E-25 128.8 12.5 93 79-174 3-96 (98)
42 cd02993 PDI_a_APS_reductase PD 99.8 2.6E-20 5.7E-25 132.5 11.6 101 77-177 2-109 (109)
43 cd03000 PDI_a_TMX3 PDIa family 99.8 3.5E-20 7.6E-25 130.5 11.8 94 84-180 7-103 (104)
44 TIGR01295 PedC_BrcD bacterioci 99.8 6.1E-20 1.3E-24 133.5 13.2 100 76-178 6-121 (122)
45 KOG0908 Thioredoxin-like prote 99.8 2.2E-20 4.8E-25 147.6 10.1 102 78-181 3-106 (288)
46 cd02961 PDI_a_family Protein D 99.8 3.5E-20 7.6E-25 127.6 10.0 97 80-177 2-101 (101)
47 cd02951 SoxW SoxW family; SoxW 99.8 2.3E-19 5.1E-24 130.2 12.2 97 85-182 5-120 (125)
48 cd02988 Phd_like_VIAF Phosduci 99.8 2.7E-19 5.8E-24 139.5 12.4 101 75-179 81-190 (192)
49 cd02992 PDI_a_QSOX PDIa family 99.8 5E-19 1.1E-23 127.1 9.6 83 77-159 2-89 (114)
50 KOG0190 Protein disulfide isom 99.8 3.2E-19 6.9E-24 154.4 9.8 106 74-180 23-131 (493)
51 cd02947 TRX_family TRX family; 99.8 2.6E-18 5.7E-23 115.9 12.2 92 85-178 2-93 (93)
52 TIGR01130 ER_PDI_fam protein d 99.8 2E-18 4.3E-23 149.3 13.8 104 77-181 2-109 (462)
53 TIGR00424 APS_reduc 5'-adenyly 99.8 1.8E-18 3.9E-23 150.0 13.0 106 75-180 350-462 (463)
54 PTZ00102 disulphide isomerase; 99.8 1.9E-18 4.1E-23 150.7 12.5 107 75-181 356-465 (477)
55 PTZ00102 disulphide isomerase; 99.8 4.6E-18 9.9E-23 148.3 14.2 104 76-181 32-138 (477)
56 cd03007 PDI_a_ERp29_N PDIa fam 99.8 1.9E-18 4.1E-23 124.1 9.4 99 77-180 2-115 (116)
57 PLN02309 5'-adenylylsulfate re 99.8 4.6E-18 1E-22 147.4 13.3 105 76-180 345-456 (457)
58 cd02982 PDI_b'_family Protein 99.8 5.8E-18 1.3E-22 118.4 9.8 89 93-181 11-103 (103)
59 TIGR00411 redox_disulf_1 small 99.8 1.5E-17 3.2E-22 111.6 11.3 81 97-181 2-82 (82)
60 PTZ00062 glutaredoxin; Provisi 99.8 1.4E-17 3.1E-22 130.6 12.0 90 81-180 4-93 (204)
61 cd02952 TRP14_like Human TRX-r 99.7 2.5E-17 5.4E-22 119.0 9.2 96 81-177 7-118 (119)
62 cd02959 ERp19 Endoplasmic reti 99.7 1.6E-17 3.4E-22 119.9 6.9 94 88-181 13-113 (117)
63 TIGR02187 GlrX_arch Glutaredox 99.7 2E-16 4.4E-21 125.3 10.9 87 95-181 20-111 (215)
64 TIGR01130 ER_PDI_fam protein d 99.7 1.8E-16 3.8E-21 137.1 11.4 105 75-181 345-454 (462)
65 PF13098 Thioredoxin_2: Thiore 99.7 1.7E-16 3.7E-21 112.6 6.2 86 92-177 3-112 (112)
66 PRK15412 thiol:disulfide inter 99.6 2.2E-15 4.7E-20 116.8 11.9 87 92-181 66-176 (185)
67 PHA02125 thioredoxin-like prot 99.6 1.8E-15 3.9E-20 100.7 9.9 71 98-177 2-73 (75)
68 TIGR00412 redox_disulf_2 small 99.6 1.5E-15 3.2E-20 101.4 9.4 73 98-177 2-75 (76)
69 TIGR02187 GlrX_arch Glutaredox 99.6 2.7E-15 5.9E-20 118.8 12.4 96 79-179 118-214 (215)
70 TIGR02738 TrbB type-F conjugat 99.6 2.3E-15 4.9E-20 113.4 11.3 87 93-181 49-153 (153)
71 cd02955 SSP411 TRX domain, SSP 99.6 2.8E-15 6E-20 109.2 11.0 98 82-180 4-118 (124)
72 PRK11509 hydrogenase-1 operon 99.6 6.6E-15 1.4E-19 107.8 12.9 105 77-182 18-125 (132)
73 PRK00293 dipZ thiol:disulfide 99.6 1.7E-15 3.6E-20 135.4 11.6 99 82-181 459-570 (571)
74 PRK14018 trifunctional thiored 99.6 1.8E-15 3.9E-20 133.0 11.0 90 90-179 52-171 (521)
75 TIGR00385 dsbE periplasmic pro 99.6 6.6E-15 1.4E-19 112.8 11.4 88 92-182 61-172 (173)
76 KOG0190 Protein disulfide isom 99.6 8.5E-16 1.8E-20 133.2 7.1 102 76-179 366-471 (493)
77 TIGR02740 TraF-like TraF-like 99.6 1.5E-14 3.3E-19 118.3 13.2 87 93-181 165-264 (271)
78 cd03010 TlpA_like_DsbE TlpA-li 99.6 9.2E-15 2E-19 106.0 9.5 79 93-173 24-126 (127)
79 KOG0912 Thiol-disulfide isomer 99.6 5.2E-15 1.1E-19 120.3 8.6 99 82-181 2-106 (375)
80 PRK03147 thiol-disulfide oxido 99.6 5.6E-14 1.2E-18 106.8 12.3 102 78-180 46-171 (173)
81 PLN02919 haloacid dehalogenase 99.6 2.2E-14 4.8E-19 135.8 12.3 89 93-181 419-536 (1057)
82 KOG0191 Thioredoxin/protein di 99.6 1.4E-14 3.1E-19 123.8 10.0 105 77-181 30-134 (383)
83 cd03008 TryX_like_RdCVF Trypar 99.6 2.9E-14 6.2E-19 106.6 9.7 71 93-163 24-128 (146)
84 cd03009 TryX_like_TryX_NRX Try 99.5 3E-14 6.5E-19 104.0 8.9 72 93-164 17-116 (131)
85 KOG4277 Uncharacterized conser 99.5 8.4E-15 1.8E-19 119.2 6.2 98 78-179 30-130 (468)
86 PF13905 Thioredoxin_8: Thiore 99.5 5.5E-14 1.2E-18 96.9 9.1 66 94-159 1-94 (95)
87 cd03011 TlpA_like_ScsD_MtbDsbE 99.5 2E-13 4.2E-18 98.2 10.6 95 79-176 6-121 (123)
88 cd02964 TryX_like_family Trypa 99.5 1.1E-13 2.3E-18 101.5 9.1 72 93-164 16-116 (132)
89 cd02973 TRX_GRX_like Thioredox 99.5 1.3E-13 2.8E-18 89.3 8.3 61 97-160 2-62 (67)
90 cd03026 AhpF_NTD_C TRX-GRX-lik 99.5 3.1E-13 6.7E-18 92.9 10.4 78 92-174 9-87 (89)
91 PRK13728 conjugal transfer pro 99.5 3.2E-13 6.9E-18 104.0 11.4 83 98-182 73-172 (181)
92 cd02958 UAS UAS family; UAS is 99.5 4.8E-13 1E-17 95.7 11.7 94 88-181 11-111 (114)
93 KOG1731 FAD-dependent sulfhydr 99.5 3.5E-14 7.6E-19 123.6 4.1 107 75-181 38-153 (606)
94 cd02966 TlpA_like_family TlpA- 99.5 6.1E-13 1.3E-17 92.8 9.3 74 93-166 18-116 (116)
95 KOG0191 Thioredoxin/protein di 99.4 5.5E-13 1.2E-17 114.0 9.6 105 77-181 145-252 (383)
96 cd02967 mauD Methylamine utili 99.4 1.3E-12 2.9E-17 92.7 8.8 70 93-162 20-110 (114)
97 PTZ00056 glutathione peroxidas 99.4 1.7E-12 3.6E-17 101.9 9.5 90 93-182 38-179 (199)
98 PF08534 Redoxin: Redoxin; In 99.4 2.8E-12 6E-17 95.0 10.1 94 81-175 16-144 (146)
99 PLN02399 phospholipid hydroper 99.4 2.7E-12 5.8E-17 103.0 10.6 104 78-182 84-235 (236)
100 cd03012 TlpA_like_DipZ_like Tl 99.4 4.6E-12 1E-16 91.9 9.7 75 93-167 22-125 (126)
101 COG0526 TrxA Thiol-disulfide i 99.3 9.7E-12 2.1E-16 85.9 8.5 87 94-180 32-123 (127)
102 TIGR01626 ytfJ_HI0045 conserve 99.3 1.6E-11 3.4E-16 95.0 9.5 82 92-176 57-175 (184)
103 cd02960 AGR Anterior Gradient 99.3 1.1E-11 2.3E-16 90.8 7.7 80 88-168 17-100 (130)
104 smart00594 UAS UAS domain. 99.3 4.5E-11 9.8E-16 86.7 10.9 93 85-177 18-121 (122)
105 PLN02412 probable glutathione 99.3 3.1E-11 6.7E-16 92.1 10.5 90 93-182 28-165 (167)
106 TIGR02661 MauD methylamine deh 99.3 2.7E-11 5.8E-16 94.2 10.0 84 93-180 73-178 (189)
107 COG4232 Thiol:disulfide interc 99.3 1.3E-11 2.8E-16 108.5 8.3 102 79-181 457-568 (569)
108 cd02969 PRX_like1 Peroxiredoxi 99.3 9.1E-11 2E-15 89.4 11.6 90 93-182 24-153 (171)
109 TIGR02540 gpx7 putative glutat 99.3 5.1E-11 1.1E-15 89.4 9.9 89 93-181 21-153 (153)
110 PF13899 Thioredoxin_7: Thiore 99.2 5.6E-11 1.2E-15 80.1 6.9 67 89-156 12-81 (82)
111 cd00340 GSH_Peroxidase Glutath 99.2 1.3E-10 2.8E-15 87.1 7.5 83 93-176 21-151 (152)
112 KOG2501 Thioredoxin, nucleored 99.1 2.2E-10 4.7E-15 85.8 8.2 72 92-163 31-131 (157)
113 PTZ00256 glutathione peroxidas 99.1 6.2E-10 1.3E-14 86.1 10.8 90 93-182 39-182 (183)
114 COG2143 Thioredoxin-related pr 99.1 9E-10 2E-14 82.0 10.7 89 90-178 38-146 (182)
115 TIGR02196 GlrX_YruB Glutaredox 99.1 5.8E-10 1.3E-14 72.3 8.4 69 98-178 2-74 (74)
116 cd03017 PRX_BCP Peroxiredoxin 99.1 1.1E-09 2.3E-14 80.3 10.0 85 93-177 22-139 (140)
117 PF02114 Phosducin: Phosducin; 99.1 8.3E-10 1.8E-14 90.1 9.6 103 75-179 124-236 (265)
118 KOG1672 ATP binding protein [P 99.1 5E-10 1.1E-14 86.1 7.6 91 76-168 66-157 (211)
119 KOG0914 Thioredoxin-like prote 99.0 8.9E-10 1.9E-14 86.2 5.9 92 75-166 123-223 (265)
120 TIGR02200 GlrX_actino Glutared 99.0 1.3E-09 2.8E-14 71.7 5.1 70 98-178 2-76 (77)
121 cd01659 TRX_superfamily Thiore 98.9 5.3E-09 1.2E-13 64.3 7.5 60 98-158 1-63 (69)
122 PF13192 Thioredoxin_3: Thiore 98.9 1.1E-08 2.4E-13 68.0 9.5 73 99-178 3-76 (76)
123 PRK09437 bcp thioredoxin-depen 98.9 1.5E-08 3.2E-13 75.8 10.6 87 93-179 29-151 (154)
124 PF13728 TraF: F plasmid trans 98.9 2.1E-08 4.5E-13 79.6 11.5 83 93-177 119-214 (215)
125 PF14595 Thioredoxin_9: Thiore 98.9 5.3E-09 1.2E-13 76.6 7.2 95 81-178 28-126 (129)
126 cd03015 PRX_Typ2cys Peroxiredo 98.9 3.3E-08 7.1E-13 75.6 11.2 88 93-180 28-156 (173)
127 PF03190 Thioredox_DsbH: Prote 98.9 2E-08 4.4E-13 76.1 9.4 98 81-180 25-140 (163)
128 PRK00522 tpx lipid hydroperoxi 98.9 2.2E-08 4.8E-13 76.3 9.7 73 93-166 43-149 (167)
129 cd03018 PRX_AhpE_like Peroxire 98.9 3.7E-08 8E-13 72.9 10.6 83 95-177 29-147 (149)
130 cd02991 UAS_ETEA UAS family, E 98.9 8.2E-08 1.8E-12 69.1 11.9 94 88-182 11-114 (116)
131 KOG0913 Thiol-disulfide isomer 98.9 6.4E-10 1.4E-14 87.8 0.9 99 77-179 25-124 (248)
132 PF00578 AhpC-TSA: AhpC/TSA fa 98.8 2.6E-08 5.7E-13 71.2 9.0 70 93-162 24-123 (124)
133 cd03014 PRX_Atyp2cys Peroxired 98.8 3.1E-08 6.8E-13 73.0 9.5 84 93-177 25-141 (143)
134 TIGR03137 AhpC peroxiredoxin. 98.8 7.6E-08 1.6E-12 74.7 11.4 87 93-179 30-154 (187)
135 PRK10606 btuE putative glutath 98.8 2.4E-08 5.3E-13 77.3 8.4 89 93-182 24-182 (183)
136 cd02970 PRX_like2 Peroxiredoxi 98.8 7E-08 1.5E-12 71.1 10.2 73 94-166 23-148 (149)
137 TIGR02739 TraF type-F conjugat 98.8 1.4E-07 3.1E-12 76.5 11.9 87 93-181 149-248 (256)
138 TIGR02180 GRX_euk Glutaredoxin 98.8 2.7E-08 5.8E-13 66.5 6.6 59 98-160 1-64 (84)
139 PRK10877 protein disulfide iso 98.7 7.5E-08 1.6E-12 77.3 9.7 81 93-180 106-230 (232)
140 PF06110 DUF953: Eukaryotic pr 98.7 1.1E-07 2.3E-12 68.7 9.0 75 84-158 6-99 (119)
141 KOG3414 Component of the U4/U6 98.7 3.4E-07 7.4E-12 65.9 11.2 98 82-179 10-118 (142)
142 cd02971 PRX_family Peroxiredox 98.7 1.2E-07 2.6E-12 69.2 9.1 77 93-169 21-131 (140)
143 KOG0911 Glutaredoxin-related p 98.7 1.2E-08 2.6E-13 80.2 3.8 81 93-174 16-96 (227)
144 cd02968 SCO SCO (an acronym fo 98.7 7.9E-08 1.7E-12 70.5 8.0 44 93-136 21-69 (142)
145 PRK13190 putative peroxiredoxi 98.7 3E-07 6.5E-12 72.2 11.2 89 93-181 26-154 (202)
146 PRK10382 alkyl hydroperoxide r 98.7 6.6E-07 1.4E-11 69.6 12.3 88 93-180 30-155 (187)
147 PF13848 Thioredoxin_6: Thiore 98.6 7.2E-07 1.6E-11 67.9 11.9 107 72-179 73-184 (184)
148 PRK13703 conjugal pilus assemb 98.6 5.2E-07 1.1E-11 72.9 11.3 87 93-181 142-241 (248)
149 PRK11200 grxA glutaredoxin 1; 98.6 4.4E-07 9.5E-12 61.4 9.1 76 97-181 2-83 (85)
150 cd03020 DsbA_DsbC_DsbG DsbA fa 98.6 1.5E-07 3.2E-12 73.4 7.5 77 93-177 76-197 (197)
151 cd02976 NrdH NrdH-redoxin (Nrd 98.6 4E-07 8.6E-12 58.7 8.4 68 98-177 2-73 (73)
152 PRK15000 peroxidase; Provision 98.6 1.1E-06 2.4E-11 69.0 11.7 88 93-180 33-161 (200)
153 TIGR03143 AhpF_homolog putativ 98.6 5.7E-07 1.2E-11 80.6 11.3 96 76-177 458-554 (555)
154 PF02966 DIM1: Mitosis protein 98.5 3.8E-06 8.2E-11 61.1 12.6 97 82-179 7-115 (133)
155 PF01216 Calsequestrin: Calseq 98.5 1.4E-06 3E-11 72.7 11.6 105 75-182 33-145 (383)
156 cd03072 PDI_b'_ERp44 PDIb' fam 98.5 1.2E-06 2.5E-11 62.5 9.5 102 78-182 1-109 (111)
157 PRK11657 dsbG disulfide isomer 98.5 5.9E-07 1.3E-11 72.9 8.7 85 93-179 116-250 (251)
158 cd03023 DsbA_Com1_like DsbA fa 98.5 9.1E-07 2E-11 65.2 8.6 80 93-178 4-154 (154)
159 PF07449 HyaE: Hydrogenase-1 e 98.5 9.7E-07 2.1E-11 62.4 8.1 95 76-172 9-106 (107)
160 KOG3425 Uncharacterized conser 98.5 6.6E-07 1.4E-11 63.9 7.2 74 84-157 13-104 (128)
161 cd03016 PRX_1cys Peroxiredoxin 98.4 3E-06 6.5E-11 66.6 10.4 86 95-180 26-153 (203)
162 PRK13599 putative peroxiredoxi 98.4 4.2E-06 9.1E-11 66.4 11.2 87 94-180 28-155 (215)
163 PF13462 Thioredoxin_4: Thiore 98.4 3.3E-06 7.1E-11 63.0 9.8 82 93-179 11-162 (162)
164 PRK13189 peroxiredoxin; Provis 98.4 5.2E-06 1.1E-10 66.2 11.0 88 93-180 34-162 (222)
165 PRK15317 alkyl hydroperoxide r 98.3 5E-06 1.1E-10 73.9 11.2 99 75-179 97-196 (517)
166 cd03019 DsbA_DsbA DsbA family, 98.3 2.9E-06 6.2E-11 64.4 8.2 40 93-132 14-53 (178)
167 cd02983 P5_C P5 family, C-term 98.3 1.5E-05 3.3E-10 58.4 11.7 105 77-182 3-116 (130)
168 PRK13191 putative peroxiredoxi 98.3 8.7E-06 1.9E-10 64.6 11.2 88 93-180 32-160 (215)
169 TIGR02183 GRXA Glutaredoxin, G 98.3 5.3E-06 1.2E-10 56.3 8.4 74 98-180 2-81 (86)
170 PTZ00137 2-Cys peroxiredoxin; 98.3 1E-05 2.2E-10 66.0 11.4 88 93-180 97-224 (261)
171 PF00462 Glutaredoxin: Glutare 98.2 6.8E-06 1.5E-10 51.7 7.1 55 98-160 1-59 (60)
172 TIGR02194 GlrX_NrdH Glutaredox 98.2 9E-06 1.9E-10 53.2 7.8 68 98-176 1-71 (72)
173 TIGR02190 GlrX-dom Glutaredoxi 98.2 7.7E-06 1.7E-10 54.5 7.4 60 93-160 5-67 (79)
174 cd03073 PDI_b'_ERp72_ERp57 PDI 98.2 9.6E-06 2.1E-10 57.9 8.3 99 80-181 3-111 (111)
175 KOG2603 Oligosaccharyltransfer 98.2 1.3E-05 2.7E-10 66.1 9.7 107 73-180 37-165 (331)
176 cd03419 GRX_GRXh_1_2_like Glut 98.2 6.4E-06 1.4E-10 54.7 6.7 57 98-160 2-63 (82)
177 PRK10954 periplasmic protein d 98.2 7.2E-06 1.6E-10 64.5 8.0 41 94-134 37-80 (207)
178 PTZ00253 tryparedoxin peroxida 98.2 1.9E-05 4.2E-10 61.7 9.9 86 93-178 35-161 (199)
179 PF05768 DUF836: Glutaredoxin- 98.2 1.5E-05 3.4E-10 53.4 8.0 76 98-178 2-81 (81)
180 PF11009 DUF2847: Protein of u 98.1 4.1E-05 8.9E-10 54.0 10.0 92 82-173 6-104 (105)
181 TIGR03140 AhpF alkyl hydropero 98.1 2.8E-05 6.2E-10 69.1 11.3 99 75-179 98-197 (515)
182 cd02981 PDI_b_family Protein D 98.1 4.9E-05 1.1E-09 52.1 9.4 92 80-179 3-96 (97)
183 cd02066 GRX_family Glutaredoxi 98.1 2.1E-05 4.6E-10 50.1 7.1 57 98-162 2-62 (72)
184 PRK10329 glutaredoxin-like pro 98.0 9.4E-05 2E-09 49.7 9.5 70 98-179 3-75 (81)
185 cd03029 GRX_hybridPRX5 Glutare 98.0 8.6E-05 1.9E-09 48.3 8.6 66 98-177 3-71 (72)
186 cd03418 GRX_GRXb_1_3_like Glut 98.0 7E-05 1.5E-09 48.8 7.8 55 98-160 2-61 (75)
187 TIGR03143 AhpF_homolog putativ 97.9 0.00011 2.4E-09 65.9 11.3 95 86-181 357-454 (555)
188 PHA03050 glutaredoxin; Provisi 97.9 9E-05 2E-09 52.6 8.3 65 90-161 9-80 (108)
189 TIGR02181 GRX_bact Glutaredoxi 97.9 6.1E-05 1.3E-09 49.8 6.6 55 98-160 1-59 (79)
190 cd02972 DsbA_family DsbA famil 97.9 6.7E-05 1.5E-09 50.4 6.6 58 98-155 1-90 (98)
191 TIGR02189 GlrX-like_plant Glut 97.8 9E-05 1.9E-09 51.7 6.6 56 98-161 10-72 (99)
192 cd03027 GRX_DEP Glutaredoxin ( 97.8 0.0002 4.4E-09 46.7 7.7 56 98-161 3-62 (73)
193 PF07912 ERp29_N: ERp29, N-ter 97.8 0.00073 1.6E-08 48.7 10.9 101 77-180 5-118 (126)
194 COG0695 GrxC Glutaredoxin and 97.7 0.00047 1E-08 46.2 8.3 66 98-174 3-74 (80)
195 KOG3170 Conserved phosducin-li 97.5 0.00058 1.3E-08 53.3 8.2 101 75-179 90-199 (240)
196 TIGR00365 monothiol glutaredox 97.5 0.0011 2.5E-08 45.9 8.5 58 95-160 12-77 (97)
197 PF00837 T4_deiodinase: Iodoth 97.4 0.0014 2.9E-08 52.6 9.4 108 73-180 79-236 (237)
198 PRK10638 glutaredoxin 3; Provi 97.3 0.0013 2.8E-08 44.0 7.1 56 98-161 4-63 (83)
199 cd03028 GRX_PICOT_like Glutare 97.3 0.0013 2.9E-08 44.8 7.2 58 95-160 8-73 (90)
200 KOG3171 Conserved phosducin-li 97.3 0.00079 1.7E-08 53.1 6.4 87 76-164 138-227 (273)
201 PF13848 Thioredoxin_6: Thiore 97.3 0.0023 4.9E-08 48.4 8.7 65 112-180 8-74 (184)
202 COG1225 Bcp Peroxiredoxin [Pos 97.2 0.0067 1.5E-07 45.8 10.4 91 91-181 27-156 (157)
203 PF13743 Thioredoxin_5: Thiore 97.2 0.001 2.3E-08 51.1 5.7 33 100-132 2-34 (176)
204 cd03067 PDI_b_PDIR_N PDIb fami 97.0 0.0083 1.8E-07 41.9 8.3 95 82-178 8-109 (112)
205 KOG1752 Glutaredoxin and relat 97.0 0.0045 9.9E-08 43.6 7.1 58 98-161 16-78 (104)
206 PRK10824 glutaredoxin-4; Provi 97.0 0.0035 7.7E-08 45.0 6.5 51 104-162 28-82 (115)
207 COG1331 Highly conserved prote 96.9 0.0045 9.8E-08 56.2 8.1 83 79-162 29-123 (667)
208 PF01323 DSBA: DSBA-like thior 96.9 0.018 3.9E-07 43.9 10.4 35 140-178 159-193 (193)
209 cd03013 PRX5_like Peroxiredoxi 96.6 0.022 4.8E-07 42.7 9.1 75 94-168 29-141 (155)
210 COG1651 DsbG Protein-disulfide 96.5 0.02 4.4E-07 45.7 8.5 38 139-181 206-243 (244)
211 PRK12759 bifunctional gluaredo 96.5 0.012 2.5E-07 51.2 7.4 55 98-160 4-70 (410)
212 cd03066 PDI_b_Calsequestrin_mi 96.4 0.075 1.6E-06 36.8 10.2 94 79-179 3-99 (102)
213 PTZ00062 glutaredoxin; Provisi 96.4 0.021 4.5E-07 45.1 8.1 50 104-161 126-179 (204)
214 cd03069 PDI_b_ERp57 PDIb famil 96.0 0.13 2.8E-06 35.8 9.6 90 82-180 7-103 (104)
215 KOG2640 Thioredoxin [Function 95.8 0.0036 7.7E-08 51.9 1.1 86 94-181 76-162 (319)
216 cd02974 AhpF_NTD_N Alkyl hydro 95.3 0.52 1.1E-05 32.4 10.3 84 85-181 9-94 (94)
217 TIGR02742 TrbC_Ftype type-F co 95.3 0.063 1.4E-06 39.3 6.0 46 133-178 56-112 (130)
218 COG0386 BtuE Glutathione perox 95.2 0.24 5.2E-06 37.3 8.8 103 78-182 10-161 (162)
219 PF09673 TrbC_Ftype: Type-F co 95.2 0.11 2.4E-06 37.0 6.8 61 111-173 36-108 (113)
220 cd03031 GRX_GRX_like Glutaredo 95.1 0.13 2.9E-06 38.4 7.4 56 98-161 2-71 (147)
221 cd02978 KaiB_like KaiB-like fa 95.0 0.11 2.4E-06 34.1 5.9 59 97-155 3-62 (72)
222 cd02990 UAS_FAF1 UAS family, F 94.9 1.1 2.4E-05 33.1 12.2 91 91-181 18-133 (136)
223 COG2761 FrnE Predicted dithiol 94.8 0.062 1.3E-06 42.9 5.1 39 140-182 176-214 (225)
224 PRK15317 alkyl hydroperoxide r 94.8 0.33 7.1E-06 43.3 10.3 86 84-181 8-94 (517)
225 COG3019 Predicted metal-bindin 94.2 0.6 1.3E-05 34.6 8.7 73 96-179 26-102 (149)
226 TIGR03140 AhpF alkyl hydropero 94.1 0.64 1.4E-05 41.4 10.5 87 84-181 8-95 (515)
227 PHA03075 glutaredoxin-like pro 93.8 0.83 1.8E-05 32.7 8.4 30 95-124 2-31 (123)
228 PF09822 ABC_transp_aux: ABC-t 93.4 3.2 7E-05 33.6 12.7 72 76-148 7-88 (271)
229 TIGR02654 circ_KaiB circadian 92.5 0.73 1.6E-05 31.3 6.4 74 95-169 3-77 (87)
230 COG1999 Uncharacterized protei 92.4 2.2 4.7E-05 33.6 10.0 104 78-182 52-205 (207)
231 KOG2507 Ubiquitin regulatory p 92.3 1.5 3.3E-05 38.2 9.4 90 92-181 16-111 (506)
232 PRK09301 circadian clock prote 91.9 1.1 2.4E-05 31.4 6.9 75 94-169 5-80 (103)
233 cd03024 DsbA_FrnE DsbA family, 91.7 0.18 3.9E-06 38.7 3.2 39 136-178 163-201 (201)
234 cd03068 PDI_b_ERp72 PDIb famil 90.5 4.4 9.6E-05 28.3 10.5 94 79-179 3-106 (107)
235 cd03040 GST_N_mPGES2 GST_N fam 89.5 3 6.4E-05 26.7 7.1 71 98-181 2-76 (77)
236 COG4545 Glutaredoxin-related p 89.4 1.3 2.8E-05 29.4 5.0 57 99-162 5-77 (85)
237 cd03022 DsbA_HCCA_Iso DsbA fam 89.2 0.39 8.4E-06 36.5 3.0 35 138-177 157-191 (192)
238 cd03074 PDI_b'_Calsequestrin_C 88.9 6.6 0.00014 27.9 9.4 101 81-181 6-120 (120)
239 COG3531 Predicted protein-disu 88.8 0.84 1.8E-05 35.8 4.5 43 139-181 165-209 (212)
240 cd03060 GST_N_Omega_like GST_N 88.8 0.89 1.9E-05 28.9 4.1 57 99-160 2-59 (71)
241 cd02977 ArsC_family Arsenate R 88.7 0.54 1.2E-05 32.6 3.2 75 99-179 2-85 (105)
242 PRK13730 conjugal transfer pil 88.5 0.92 2E-05 35.7 4.6 41 137-178 151-191 (212)
243 PF13778 DUF4174: Domain of un 87.8 7.2 0.00016 27.8 8.6 42 139-180 68-111 (118)
244 PF07689 KaiB: KaiB domain; I 87.2 0.18 4E-06 33.9 0.0 53 101-153 3-56 (82)
245 cd00570 GST_N_family Glutathio 87.0 1 2.2E-05 27.3 3.5 54 100-159 3-58 (71)
246 cd03041 GST_N_2GST_N GST_N fam 86.9 3.9 8.4E-05 26.4 6.3 70 98-179 2-75 (77)
247 COG3634 AhpF Alkyl hydroperoxi 86.8 2.8 6.2E-05 36.1 6.8 99 75-178 97-195 (520)
248 cd03037 GST_N_GRX2 GST_N famil 86.4 3.3 7.1E-05 26.0 5.7 51 100-154 3-53 (71)
249 TIGR01617 arsC_related transcr 86.3 1.6 3.5E-05 30.9 4.6 34 99-138 2-35 (117)
250 cd03051 GST_N_GTT2_like GST_N 86.3 1.1 2.3E-05 28.2 3.3 52 99-154 2-57 (74)
251 cd03036 ArsC_like Arsenate Red 84.3 1.8 3.9E-05 30.4 4.0 34 99-138 2-35 (111)
252 PF02630 SCO1-SenC: SCO1/SenC; 84.3 3 6.4E-05 31.7 5.4 58 78-136 37-98 (174)
253 PRK01655 spxA transcriptional 83.6 2.3 5E-05 30.9 4.4 35 98-138 2-36 (131)
254 cd03059 GST_N_SspA GST_N famil 81.9 3.9 8.5E-05 25.6 4.6 69 99-179 2-71 (73)
255 cd03035 ArsC_Yffb Arsenate Red 81.7 2.2 4.7E-05 29.8 3.5 41 99-145 2-49 (105)
256 KOG1651 Glutathione peroxidase 81.3 8.7 0.00019 29.3 6.8 105 77-182 18-170 (171)
257 KOG1364 Predicted ubiquitin re 80.5 2.3 4.9E-05 36.1 3.7 55 127-181 133-189 (356)
258 PF04134 DUF393: Protein of un 80.1 2.4 5.2E-05 29.5 3.4 57 101-159 2-61 (114)
259 PF04592 SelP_N: Selenoprotein 80.0 15 0.00032 29.7 8.0 45 91-135 23-71 (238)
260 KOG4277 Uncharacterized conser 79.9 24 0.00053 29.8 9.5 92 78-179 136-229 (468)
261 cd03025 DsbA_FrnE_like DsbA fa 79.8 2.9 6.3E-05 31.6 4.0 28 98-125 3-30 (193)
262 PF06053 DUF929: Domain of unk 78.3 7.9 0.00017 31.5 6.1 58 91-156 55-113 (249)
263 cd03025 DsbA_FrnE_like DsbA fa 77.1 3.1 6.7E-05 31.5 3.4 23 137-159 158-180 (193)
264 cd03045 GST_N_Delta_Epsilon GS 76.9 2.7 5.9E-05 26.5 2.6 52 99-154 2-57 (74)
265 cd03032 ArsC_Spx Arsenate Redu 75.6 6.7 0.00015 27.6 4.6 34 98-137 2-35 (115)
266 cd03055 GST_N_Omega GST_N fami 74.6 18 0.00039 23.9 6.3 53 98-154 19-72 (89)
267 KOG0855 Alkyl hydroperoxide re 73.8 18 0.00038 27.9 6.5 89 92-180 88-208 (211)
268 KOG2792 Putative cytochrome C 73.8 26 0.00055 28.8 7.8 89 93-181 138-275 (280)
269 COG0450 AhpC Peroxiredoxin [Po 73.5 42 0.00091 26.3 9.6 87 94-180 33-160 (194)
270 PF13417 GST_N_3: Glutathione 72.6 22 0.00047 22.6 9.5 69 100-180 1-70 (75)
271 PRK12559 transcriptional regul 72.4 6.8 0.00015 28.5 4.0 32 98-135 2-33 (131)
272 COG0278 Glutaredoxin-related p 71.4 17 0.00037 25.5 5.5 55 103-162 27-83 (105)
273 PF06953 ArsD: Arsenical resis 68.6 29 0.00063 25.1 6.5 50 126-178 40-99 (123)
274 cd03021 DsbA_GSTK DsbA family, 67.3 4.5 9.8E-05 31.5 2.3 39 139-177 170-208 (209)
275 cd03056 GST_N_4 GST_N family, 66.4 9.2 0.0002 23.7 3.3 55 99-159 2-60 (73)
276 PF08806 Sep15_SelM: Sep15/Sel 66.2 10 0.00022 25.1 3.5 34 148-181 41-76 (78)
277 COG3011 Predicted thiol-disulf 66.0 38 0.00083 25.0 6.8 66 93-160 5-72 (137)
278 PRK00366 ispG 4-hydroxy-3-meth 65.7 10 0.00023 32.4 4.2 76 106-181 271-357 (360)
279 PRK13344 spxA transcriptional 63.2 15 0.00031 26.8 4.2 33 98-136 2-34 (132)
280 COG0821 gcpE 1-hydroxy-2-methy 60.8 15 0.00032 31.3 4.2 83 97-181 257-351 (361)
281 COG5494 Predicted thioredoxin/ 57.9 53 0.0011 26.3 6.6 74 98-179 13-86 (265)
282 PF00352 TBP: Transcription fa 57.3 20 0.00044 23.8 3.8 31 149-181 49-79 (86)
283 COG3411 Ferredoxin [Energy pro 56.4 28 0.0006 22.2 4.0 29 149-181 17-45 (64)
284 TIGR02743 TraW type-F conjugat 49.0 57 0.0012 25.7 5.6 40 116-161 158-197 (202)
285 PF07092 DUF1356: Protein of u 47.8 12 0.00026 30.2 1.7 27 22-48 29-55 (238)
286 PF10122 Mu-like_Com: Mu-like 46.7 15 0.00032 22.4 1.5 18 30-47 23-40 (51)
287 PRK09481 sspA stringent starva 46.6 99 0.0021 23.7 6.7 62 92-159 5-67 (211)
288 PF07511 DUF1525: Protein of u 45.7 55 0.0012 23.4 4.6 36 140-179 75-110 (114)
289 cd03053 GST_N_Phi GST_N family 45.6 46 0.00099 20.8 4.0 56 98-159 2-61 (76)
290 PF05988 DUF899: Bacterial pro 45.3 1.4E+02 0.0031 23.7 7.3 78 85-162 59-169 (211)
291 KOG2244 Highly conserved prote 45.2 24 0.00051 32.2 3.2 73 82-155 101-184 (786)
292 TIGR02098 MJ0042_CXXC MJ0042 f 44.9 8.2 0.00018 21.4 0.2 18 31-48 2-19 (38)
293 cd03033 ArsC_15kD Arsenate Red 43.2 31 0.00068 24.3 3.1 22 98-119 2-23 (113)
294 cd03062 TRX_Fd_Sucrase TRX-lik 41.8 56 0.0012 22.3 4.1 62 105-181 15-83 (97)
295 COG5429 Uncharacterized secret 41.3 54 0.0012 26.6 4.4 80 95-179 42-139 (261)
296 PF00255 GSHPx: Glutathione pe 41.3 1.2E+02 0.0027 21.2 5.8 44 92-136 19-63 (108)
297 cd03052 GST_N_GDAP1 GST_N fami 39.6 97 0.0021 19.5 6.8 55 99-159 2-60 (73)
298 PRK13738 conjugal transfer pil 38.9 1E+02 0.0022 24.4 5.6 41 117-162 157-198 (209)
299 PF11317 DUF3119: Protein of u 38.1 61 0.0013 23.2 3.8 33 148-180 82-114 (116)
300 TIGR02174 CXXU_selWTH selT/sel 37.3 98 0.0021 19.8 4.5 27 151-177 42-71 (72)
301 TIGR03757 conj_TIGR03757 integ 36.3 95 0.0021 22.1 4.6 34 140-177 76-109 (113)
302 PF09695 YtfJ_HI0045: Bacteria 35.8 1.4E+02 0.0031 22.6 5.7 29 151-179 127-156 (160)
303 cd00652 TBP_TLF TATA box bindi 35.4 80 0.0017 24.1 4.5 29 151-181 141-169 (174)
304 PF04551 GcpE: GcpE protein; 35.0 39 0.00085 29.0 2.9 75 106-180 271-358 (359)
305 PF06764 DUF1223: Protein of u 34.5 2.3E+02 0.0049 22.3 9.7 76 98-180 2-97 (202)
306 cd04518 TBP_archaea archaeal T 34.4 86 0.0019 24.0 4.5 29 151-181 140-168 (174)
307 COG1393 ArsC Arsenate reductas 34.2 54 0.0012 23.3 3.2 24 97-120 2-25 (117)
308 PRK00394 transcription factor; 33.7 89 0.0019 24.0 4.5 30 150-181 140-169 (179)
309 cd00652 TBP_TLF TATA box bindi 33.5 89 0.0019 23.8 4.4 30 150-181 48-77 (174)
310 PF13719 zinc_ribbon_5: zinc-r 33.3 22 0.00048 19.8 0.8 18 31-48 2-19 (37)
311 cd04517 TLF TBP-like factors ( 33.0 80 0.0017 24.1 4.1 30 150-181 48-77 (174)
312 TIGR03521 GldG gliding-associa 32.8 3.8E+02 0.0082 24.3 10.0 76 73-150 27-116 (552)
313 PLN00062 TATA-box-binding prot 32.4 95 0.0021 23.9 4.4 29 151-181 140-168 (179)
314 cd04517 TLF TBP-like factors ( 32.3 95 0.002 23.7 4.4 29 151-181 141-169 (174)
315 cd03022 DsbA_HCCA_Iso DsbA fam 31.9 77 0.0017 23.6 3.9 30 100-129 3-32 (192)
316 PRK00394 transcription factor; 31.7 99 0.0021 23.7 4.5 30 150-181 47-76 (179)
317 cd04516 TBP_eukaryotes eukaryo 31.5 1E+02 0.0022 23.6 4.5 29 151-181 49-77 (174)
318 cd04516 TBP_eukaryotes eukaryo 31.1 1E+02 0.0022 23.6 4.4 29 151-181 140-168 (174)
319 COG4752 Uncharacterized protei 30.6 56 0.0012 24.7 2.8 32 81-112 120-151 (190)
320 PLN00062 TATA-box-binding prot 30.1 1.1E+02 0.0024 23.6 4.4 30 150-181 48-77 (179)
321 cd04518 TBP_archaea archaeal T 29.3 97 0.0021 23.7 4.0 30 150-181 48-77 (174)
322 cd03049 GST_N_3 GST_N family, 28.9 1.3E+02 0.0028 18.4 4.1 57 100-159 3-60 (73)
323 COG2101 SPT15 TATA-box binding 28.6 1.1E+02 0.0023 23.7 4.0 29 151-181 55-83 (185)
324 TIGR03107 glu_aminopep glutamy 28.6 2.6E+02 0.0057 23.8 6.9 83 95-178 250-332 (350)
325 KOG0912 Thiol-disulfide isomer 27.3 3.9E+02 0.0085 22.8 7.4 97 75-180 209-318 (375)
326 cd03034 ArsC_ArsC Arsenate Red 26.8 67 0.0014 22.4 2.6 31 99-135 2-32 (112)
327 PF09936 Methyltrn_RNA_4: SAM- 26.8 66 0.0014 25.0 2.7 27 80-106 118-144 (185)
328 cd03061 GST_N_CLIC GST_N famil 26.2 2.1E+02 0.0046 19.3 7.8 66 103-180 19-85 (91)
329 PF00708 Acylphosphatase: Acyl 26.2 1.5E+02 0.0032 19.7 4.1 38 139-180 25-62 (91)
330 cd03058 GST_N_Tau GST_N family 25.8 1.7E+02 0.0036 18.0 6.6 68 100-179 3-72 (74)
331 PF04267 SoxD: Sarcosine oxida 25.1 67 0.0015 21.6 2.2 31 77-107 28-62 (84)
332 cd03071 PDI_b'_NRX PDIb' famil 24.9 2.6E+02 0.0057 19.9 7.8 90 92-182 12-116 (116)
333 TIGR00014 arsC arsenate reduct 24.9 75 0.0016 22.2 2.6 32 99-136 2-33 (114)
334 TIGR01764 excise DNA binding d 22.5 17 0.00038 20.5 -1.0 12 168-179 38-49 (49)
335 KOG0852 Alkyl hydroperoxide re 22.2 3.8E+02 0.0083 20.9 8.2 58 93-150 32-123 (196)
336 PRK10853 putative reductase; P 22.1 1E+02 0.0022 21.8 2.8 22 98-119 2-23 (118)
337 PF07700 HNOB: Heme NO binding 22.1 2.2E+02 0.0047 21.3 4.8 43 93-135 126-169 (171)
338 PRK09864 putative peptidase; P 22.1 5.1E+02 0.011 22.2 7.6 85 93-178 248-332 (356)
339 COG4604 CeuD ABC-type enteroch 22.0 2.9E+02 0.0063 22.3 5.5 50 106-163 168-217 (252)
340 cd00307 RuBisCO_small_like Rib 22.0 96 0.0021 20.8 2.5 35 101-135 28-71 (84)
341 TIGR03759 conj_TIGR03759 integ 22.0 4E+02 0.0087 21.0 7.4 39 93-135 107-145 (200)
342 PF05626 DUF790: Protein of un 21.9 2E+02 0.0042 25.0 4.9 34 147-180 301-335 (379)
343 TIGR01616 nitro_assoc nitrogen 21.9 1.3E+02 0.0027 21.7 3.3 22 98-119 3-24 (126)
344 cd03050 GST_N_Theta GST_N fami 21.7 2.1E+02 0.0046 17.7 4.9 55 99-159 2-60 (76)
345 cd06538 CIDE_N_FSP27 CIDE_N do 21.5 1.3E+02 0.0029 20.0 3.0 23 140-162 30-52 (79)
346 KOG1731 FAD-dependent sulfhydr 21.4 81 0.0017 28.9 2.5 47 134-181 223-269 (606)
347 cd06537 CIDE_N_B CIDE_N domain 21.0 1.1E+02 0.0024 20.4 2.6 23 140-162 30-52 (81)
348 KOG0833 Cytidine deaminase [Nu 20.9 58 0.0013 25.0 1.4 18 101-119 101-118 (173)
349 TIGR03765 ICE_PFL_4695 integra 20.8 83 0.0018 22.1 2.0 37 114-154 63-99 (105)
350 PF10865 DUF2703: Domain of un 20.7 2.1E+02 0.0045 20.6 4.1 58 104-166 13-77 (120)
351 PF11072 DUF2859: Protein of u 20.7 91 0.002 23.2 2.3 36 115-154 102-137 (142)
352 PF05679 CHGN: Chondroitin N-a 20.6 6.2E+02 0.013 22.7 8.2 71 85-155 269-347 (499)
353 cd03054 GST_N_Metaxin GST_N fa 20.4 2.2E+02 0.0048 17.4 6.1 58 104-179 14-71 (72)
354 TIGR00612 ispG_gcpE 1-hydroxy- 20.3 65 0.0014 27.5 1.7 75 103-181 262-345 (346)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-31 Score=197.53 Aligned_cols=108 Identities=48% Similarity=0.937 Sum_probs=104.1
Q ss_pred cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165 75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF 154 (182)
Q Consensus 75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~ 154 (182)
...+..++.++|++.+++++.||+|+|||+||+||+++.|.++++..+|.++++|+++|+|++.+++.+|+|+++||+++
T Consensus 42 ~~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLV 121 (150)
T ss_pred cccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEE
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165 155 FKNGEKKESIIGAVPKSTLSSTLDKYVE 182 (182)
Q Consensus 155 f~~G~~v~~~~G~~~~~~l~~~l~~~l~ 182 (182)
|+||++++++.|..+.+++.++|+++|+
T Consensus 122 fknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 122 FKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999874
No 2
>PRK10996 thioredoxin 2; Provisional
Probab=99.96 E-value=3.4e-28 Score=180.58 Aligned_cols=138 Identities=33% Similarity=0.626 Sum_probs=126.7
Q ss_pred eeeccCCCCcccccCcccccCCCCCCCCCcccchhhhhhhhhhccCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhh
Q 030165 31 KIHLPISNGLNKSNFSFTSSCSSLSLPLGSRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCR 110 (182)
Q Consensus 31 ~~~~p~~~~~~~~~~~~~~s~s~~~~p~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~ 110 (182)
+..||.|...+|+|.... .-...|++ |......+.+.+++.++|++ +..++++++|+||++||++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~-------~~~~~~~~~~i~~~~~~~~~-~i~~~k~vvv~F~a~wC~~C~ 68 (139)
T PRK10996 2 NTVCTSCQAINRLPDERI-----EDAAKCGR-------CGHDLFDGEVINATGETLDK-LLQDDLPVVIDFWAPWCGPCR 68 (139)
T ss_pred eEECCCCCCcCCCCCccc-----cCCCcCCC-------CCCccCCCCCEEcCHHHHHH-HHhCCCeEEEEEECCCCHHHH
Confidence 568999999999988776 56667777 77778888899999999998 456789999999999999999
Q ss_pred hhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 111 MIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 111 ~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
.+.|.|+++++++.+++.++++|.+++++++++|+|+++||+++|++|+.+.++.|..+.++|.+||++++
T Consensus 69 ~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 69 NFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 99999999999999889999999999999999999999999999999999999999999999999999875
No 3
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.95 E-value=5.5e-27 Score=169.71 Aligned_cols=107 Identities=16% Similarity=0.196 Sum_probs=101.0
Q ss_pred cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChh--hh--hhhHHHHHHHHHh--cCceEEEEEeCCCChHHHHHcCCCc
Q 030165 75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGP--CR--MIAPAIEELAKEY--AGKVACFKLNTDDSPNIATKYGIRS 148 (182)
Q Consensus 75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~--C~--~~~p~l~~~a~~~--~~~v~~~~vd~d~~~~l~~~~~I~~ 148 (182)
...+..+|+++|++.+.+++.++|++||+.||++ |+ ++.|.+++++.++ .+++.|++||+|++++++++|||++
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~ 87 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE 87 (120)
T ss_pred CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence 3568889999999999999999999999999988 99 9999999999998 7889999999999999999999999
Q ss_pred ccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165 149 IPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182 (182)
Q Consensus 149 iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~ 182 (182)
+||+++|+||+.+. +.|..+++.|.+||+++++
T Consensus 88 iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~~ 120 (120)
T cd03065 88 EDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLIE 120 (120)
T ss_pred ccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHhC
Confidence 99999999999887 9999999999999999874
No 4
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.93 E-value=7.6e-26 Score=161.88 Aligned_cols=88 Identities=18% Similarity=0.397 Sum_probs=81.1
Q ss_pred hhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEE
Q 030165 83 DSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKK 161 (182)
Q Consensus 83 ~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v 161 (182)
.++|++.+.. +++++||+|||+||+||++|.|.|+++++++++.+.|++||+|++++++++|+|+++||+++|+||+.+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 4677876653 688999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEEcCCCH
Q 030165 162 ESIIGAVPK 170 (182)
Q Consensus 162 ~~~~G~~~~ 170 (182)
.+..|..+.
T Consensus 82 ~~~~G~~~~ 90 (114)
T cd02954 82 KIDLGTGNN 90 (114)
T ss_pred EEEcCCCCC
Confidence 999987654
No 5
>PHA02278 thioredoxin-like protein
Probab=99.93 E-value=2.3e-25 Score=157.36 Aligned_cols=94 Identities=18% Similarity=0.275 Sum_probs=84.9
Q ss_pred ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC----hHHHHHcCCCcccEEEEEEC
Q 030165 82 TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS----PNIATKYGIRSIPTVLFFKN 157 (182)
Q Consensus 82 ~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~----~~l~~~~~I~~iPTl~~f~~ 157 (182)
+.++|.+.+ ..+++++|+|||+||+||+.+.|.|+++++++..++.|+++|+|.+ ++++++|+|+++||+++|+|
T Consensus 3 ~~~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 3 SLVDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred CHHHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 346788755 6789999999999999999999999999988766688999999986 68999999999999999999
Q ss_pred CeEEEEEEcCCCHHHHHHH
Q 030165 158 GEKKESIIGAVPKSTLSST 176 (182)
Q Consensus 158 G~~v~~~~G~~~~~~l~~~ 176 (182)
|++++++.|..+.+++.++
T Consensus 82 G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 82 GQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CEEEEEEeCCCCHHHHHhh
Confidence 9999999999999988775
No 6
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.93 E-value=2.2e-25 Score=159.92 Aligned_cols=102 Identities=12% Similarity=0.172 Sum_probs=95.0
Q ss_pred CccEEcChhhHHHHH--HcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHH-HHcCCCcccEE
Q 030165 76 NEVQVVTDSSWENLV--ISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIA-TKYGIRSIPTV 152 (182)
Q Consensus 76 ~~v~~l~~~~~~~~~--~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~-~~~~I~~iPTl 152 (182)
..+.++++++|++.+ ..++++++|+|||+||++|+++.|.|+++++.+.+.+.|++||++++.+++ ++|+|+++||+
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl 88 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVI 88 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEE
Confidence 568999999999853 578999999999999999999999999999999988999999999999999 58999999999
Q ss_pred EEEECCeEEEEEEcCCCHHHHHHHH
Q 030165 153 LFFKNGEKKESIIGAVPKSTLSSTL 177 (182)
Q Consensus 153 ~~f~~G~~v~~~~G~~~~~~l~~~l 177 (182)
++|++|+...++.|..+.++|..|+
T Consensus 89 ~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 89 HLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred EEEECCccceEEeCCCCHHHHHhhC
Confidence 9999999999999999999998873
No 7
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.93 E-value=1e-24 Score=151.93 Aligned_cols=103 Identities=39% Similarity=0.804 Sum_probs=98.1
Q ss_pred cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC
Q 030165 78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN 157 (182)
Q Consensus 78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~ 157 (182)
|..+++++|++.+..+++++||+||++||++|+.+.|.|+++++++.+++.|+.+|++++.+++++|+|+++||+++|++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 80 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN 80 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC
Confidence 46789999999777779999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CeEEEEEEcCCCHHHHHHHHHHH
Q 030165 158 GEKKESIIGAVPKSTLSSTLDKY 180 (182)
Q Consensus 158 G~~v~~~~G~~~~~~l~~~l~~~ 180 (182)
|+.+.++.|..+.+.|.+||++.
T Consensus 81 g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 81 GKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp TEEEEEEESSSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHcC
Confidence 99999999999999999999873
No 8
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.3e-25 Score=180.36 Aligned_cols=106 Identities=46% Similarity=0.895 Sum_probs=100.5
Q ss_pred CccEEcChhhHHHHHHc--CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165 76 NEVQVVTDSSWENLVIS--SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVL 153 (182)
Q Consensus 76 ~~v~~l~~~~~~~~~~~--~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~ 153 (182)
..+.++|..+|+..++. ..+||||+||+|||++|+.+.|.+++++.+|.|++.+++||+|+++.++.+|||++|||++
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVY 102 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEE
Confidence 34899999999998764 4569999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 154 FFKNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 154 ~f~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
.|++|+.++.+.|..+.+++.+||++++
T Consensus 103 af~dGqpVdgF~G~qPesqlr~~ld~~~ 130 (304)
T COG3118 103 AFKDGQPVDGFQGAQPESQLRQFLDKVL 130 (304)
T ss_pred EeeCCcCccccCCCCcHHHHHHHHHHhc
Confidence 9999999999999999999999999876
No 9
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.92 E-value=7.9e-25 Score=153.98 Aligned_cols=101 Identities=27% Similarity=0.573 Sum_probs=94.4
Q ss_pred ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEE
Q 030165 77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK 156 (182)
Q Consensus 77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~ 156 (182)
.+.+++.++|++.+..++++++|+||++||++|+.+.|.++++++++.+.+.|+++|++++++++++|+|+++||+++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 81 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYP 81 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEc
Confidence 36788999999988888889999999999999999999999999999888999999999999999999999999999999
Q ss_pred CC-eEEEEEEcCCC-HHHHHHHH
Q 030165 157 NG-EKKESIIGAVP-KSTLSSTL 177 (182)
Q Consensus 157 ~G-~~v~~~~G~~~-~~~l~~~l 177 (182)
+| +.+.++.|..+ .++|.+||
T Consensus 82 ~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 82 GNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CCCCCceEccCCCCCHHHHHhhC
Confidence 88 89999999987 99998875
No 10
>PRK09381 trxA thioredoxin; Provisional
Probab=99.92 E-value=3.1e-24 Score=152.26 Aligned_cols=108 Identities=46% Similarity=0.914 Sum_probs=101.8
Q ss_pred cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165 75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF 154 (182)
Q Consensus 75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~ 154 (182)
.+.++++++++|.+.+.+.+++++|+||++||++|+.+.|.|+++++++.+++.++.+|++.++.++++|+|+++||+++
T Consensus 2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 81 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL 81 (109)
T ss_pred CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEE
Confidence 35688899999998777889999999999999999999999999999999889999999999999999999999999999
Q ss_pred EECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165 155 FKNGEKKESIIGAVPKSTLSSTLDKYVE 182 (182)
Q Consensus 155 f~~G~~v~~~~G~~~~~~l~~~l~~~l~ 182 (182)
|++|+.+.+..|..+.+++.++|++.|+
T Consensus 82 ~~~G~~~~~~~G~~~~~~l~~~i~~~~~ 109 (109)
T PRK09381 82 FKNGEVAATKVGALSKGQLKEFLDANLA 109 (109)
T ss_pred EeCCeEEEEecCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999998774
No 11
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.92 E-value=9.6e-25 Score=152.98 Aligned_cols=99 Identities=26% Similarity=0.477 Sum_probs=92.9
Q ss_pred ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEE
Q 030165 77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK 156 (182)
Q Consensus 77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~ 156 (182)
++.+++.++|++.+ ..+++++|+||++||++|+++.|.|+++++++++.+.|+++|+++++.++++|+|+++||+++|+
T Consensus 2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEc
Confidence 57889999999965 56699999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCeEEEEEEcCCCHHHHHHH
Q 030165 157 NGEKKESIIGAVPKSTLSST 176 (182)
Q Consensus 157 ~G~~v~~~~G~~~~~~l~~~ 176 (182)
+|+.+.++.|..+.+.|.+|
T Consensus 81 ~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 81 SGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred CCCCcccCCCCCCHHHHHhh
Confidence 99999999999999988876
No 12
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.91 E-value=6.3e-24 Score=147.21 Aligned_cols=94 Identities=36% Similarity=0.751 Sum_probs=87.8
Q ss_pred hHHHHHHcC-CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEE
Q 030165 85 SWENLVISS-ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKES 163 (182)
Q Consensus 85 ~~~~~~~~~-~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~ 163 (182)
+|++.+.++ +++++|+||++||++|+++.|.++++++.+.+.+.++++|++.+.+++++|+|.++||+++|++|+.+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 577767555 7899999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHH
Q 030165 164 IIGAVPKSTLSSTLD 178 (182)
Q Consensus 164 ~~G~~~~~~l~~~l~ 178 (182)
+.|..+.++|.+||+
T Consensus 82 ~~g~~~~~~l~~~l~ 96 (96)
T cd02956 82 FQGAQPEEQLRQMLD 96 (96)
T ss_pred ecCCCCHHHHHHHhC
Confidence 999999999999874
No 13
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.91 E-value=1.5e-23 Score=147.98 Aligned_cols=96 Identities=22% Similarity=0.353 Sum_probs=84.7
Q ss_pred ChhhHHHHHHcC-CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh---HHHHHcCCCcccEEEEEEC
Q 030165 82 TDSSWENLVISS-ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP---NIATKYGIRSIPTVLFFKN 157 (182)
Q Consensus 82 ~~~~~~~~~~~~-~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~---~l~~~~~I~~iPTl~~f~~ 157 (182)
+.++|++.+.+. ++++||+|||+||++|+++.|.|+++++++ +++.|+++|.|++. +++++|+|+++||+++|+|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 467888877644 899999999999999999999999999999 56999999999875 7999999999999999999
Q ss_pred CeEEEEEEcCCCHHHHHHHHHH
Q 030165 158 GEKKESIIGAVPKSTLSSTLDK 179 (182)
Q Consensus 158 G~~v~~~~G~~~~~~l~~~l~~ 179 (182)
|+++.++.|. .+++|.+.+.+
T Consensus 81 G~~v~~~~G~-~~~~l~~~~~~ 101 (103)
T cd02985 81 GEKIHEEEGI-GPDELIGDVLY 101 (103)
T ss_pred CeEEEEEeCC-CHHHHHHHHHh
Confidence 9999999995 55667776654
No 14
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.91 E-value=7.9e-24 Score=151.31 Aligned_cols=102 Identities=24% Similarity=0.375 Sum_probs=93.1
Q ss_pred EEcChhhHHHHHHc--CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165 79 QVVTDSSWENLVIS--SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDSPNIATKYGIRSIPTVLFF 155 (182)
Q Consensus 79 ~~l~~~~~~~~~~~--~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f 155 (182)
..++.++|.+.+.. .+++++|+||++||++|+++.|.++++++++.+ ++.++++|++.++.++++|+|+++||+++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 34678889876653 689999999999999999999999999999975 499999999999999999999999999999
Q ss_pred ECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165 156 KNGEKKESIIGAVPKSTLSSTLDKY 180 (182)
Q Consensus 156 ~~G~~v~~~~G~~~~~~l~~~l~~~ 180 (182)
++|+.+.+..|..+.+.|.++|+++
T Consensus 87 ~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 87 INGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred ECCEEEEEecCCCCHHHHHHHHhcC
Confidence 9999999999999999999999874
No 15
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.91 E-value=1.9e-23 Score=147.09 Aligned_cols=97 Identities=26% Similarity=0.576 Sum_probs=88.3
Q ss_pred cChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEEEEECCe
Q 030165 81 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 159 (182)
Q Consensus 81 l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~ 159 (182)
-+.++|+. ++.++++++|+|||+||++|+.+.|.|+++++++++ .+.|+.+|.| +++++++|+|+++||+++|++|+
T Consensus 5 ~~~~~~~~-~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 5 NNQEEWEE-LLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred cCHHHHHH-HHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCE
Confidence 47788888 456789999999999999999999999999999975 4789999999 78899999999999999999999
Q ss_pred EEEEEEcCCCHHHHHHHHHHH
Q 030165 160 KKESIIGAVPKSTLSSTLDKY 180 (182)
Q Consensus 160 ~v~~~~G~~~~~~l~~~l~~~ 180 (182)
.+.+..|. +.+.+.++|+++
T Consensus 83 ~~~~~~G~-~~~~~~~~i~~~ 102 (102)
T cd02948 83 LVAVIRGA-NAPLLNKTITEL 102 (102)
T ss_pred EEEEEecC-ChHHHHHHHhhC
Confidence 99999995 889999999864
No 16
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.2e-24 Score=149.72 Aligned_cols=89 Identities=34% Similarity=0.802 Sum_probs=81.5
Q ss_pred HHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCC
Q 030165 90 VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVP 169 (182)
Q Consensus 90 ~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~ 169 (182)
....+++++|+|||+|||||+++.|.|++++.+|++ +.|+++|+|+.++++++|+|+++||+++|++|++++++.|+..
T Consensus 17 ~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~ 95 (106)
T KOG0907|consen 17 AEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANK 95 (106)
T ss_pred hhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCH
Confidence 334579999999999999999999999999999998 9999999999999999999999999999999999999999754
Q ss_pred HHHHHHHHHHH
Q 030165 170 KSTLSSTLDKY 180 (182)
Q Consensus 170 ~~~l~~~l~~~ 180 (182)
. ++.+.|+++
T Consensus 96 ~-~l~~~i~~~ 105 (106)
T KOG0907|consen 96 A-ELEKKIAKH 105 (106)
T ss_pred H-HHHHHHHhc
Confidence 4 788877654
No 17
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.91 E-value=3.2e-23 Score=153.62 Aligned_cols=101 Identities=16% Similarity=0.302 Sum_probs=91.1
Q ss_pred cChhhHHHHHH-cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEE-EEECC
Q 030165 81 VTDSSWENLVI-SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVL-FFKNG 158 (182)
Q Consensus 81 l~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~-~f~~G 158 (182)
-+.++|++.+. ..+++|||+|||+||+||+++.|.|+++++++++.+.|++||+|+++++++.|+|++.||++ +|++|
T Consensus 9 ~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g 88 (142)
T PLN00410 9 HSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNK 88 (142)
T ss_pred CCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECC
Confidence 35788888776 46889999999999999999999999999999988999999999999999999999887666 88999
Q ss_pred e-EEEEEEc--------CCCHHHHHHHHHHHh
Q 030165 159 E-KKESIIG--------AVPKSTLSSTLDKYV 181 (182)
Q Consensus 159 ~-~v~~~~G--------~~~~~~l~~~l~~~l 181 (182)
+ .+.+..| ..+.++|.+.++.++
T Consensus 89 ~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 89 HIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred eEEEEEecccccccccccCCHHHHHHHHHHHH
Confidence 9 8899999 678999999988765
No 18
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.90 E-value=3.2e-23 Score=147.51 Aligned_cols=98 Identities=15% Similarity=0.285 Sum_probs=91.3
Q ss_pred ccEEcChhhHHHHHHcCCCcEEEEEEcCC--ChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165 77 EVQVVTDSSWENLVISSENPVLVEFWAPW--CGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF 154 (182)
Q Consensus 77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~w--C~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~ 154 (182)
....+|.++|++.+ +.+.+++|+||++| |++|+.+.|.|++++++|++++.|+++|+|++++++.+|+|+++||+++
T Consensus 11 ~~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~ 89 (111)
T cd02965 11 GWPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLF 89 (111)
T ss_pred CCcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEE
Confidence 35678999999854 88899999999997 9999999999999999999999999999999999999999999999999
Q ss_pred EECCeEEEEEEcCCCHHHHHH
Q 030165 155 FKNGEKKESIIGAVPKSTLSS 175 (182)
Q Consensus 155 f~~G~~v~~~~G~~~~~~l~~ 175 (182)
|+||+.+++..|..+.+++.+
T Consensus 90 fkdGk~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 90 FRDGRYVGVLAGIRDWDEYVA 110 (111)
T ss_pred EECCEEEEEEeCccCHHHHhh
Confidence 999999999999999888753
No 19
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.90 E-value=4.3e-23 Score=146.34 Aligned_cols=100 Identities=32% Similarity=0.563 Sum_probs=89.8
Q ss_pred ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc------CceEEEEEeCCCChHHHHHcCCCccc
Q 030165 77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA------GKVACFKLNTDDSPNIATKYGIRSIP 150 (182)
Q Consensus 77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~------~~v~~~~vd~d~~~~l~~~~~I~~iP 150 (182)
.+.++++++|++. ...+++++|+|||+||++|+++.|.++++++.+. +++.++++|+|++++++++|+|+++|
T Consensus 2 ~v~~l~~~~f~~~-i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSLTSGNIDDI-LQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEcCHhhHHHH-HhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 4788999999985 4778899999999999999999999999998763 24899999999999999999999999
Q ss_pred EEEEEECCeE-EEEEEcCCCHHHHHHHH
Q 030165 151 TVLFFKNGEK-KESIIGAVPKSTLSSTL 177 (182)
Q Consensus 151 Tl~~f~~G~~-v~~~~G~~~~~~l~~~l 177 (182)
|+++|++|++ ..++.|..+.++|.+||
T Consensus 81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999999984 47888999999998885
No 20
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.90 E-value=6.1e-23 Score=145.16 Aligned_cols=101 Identities=28% Similarity=0.565 Sum_probs=93.2
Q ss_pred cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC--ChHHHHHcCCCcccEEEEE
Q 030165 78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD--SPNIATKYGIRSIPTVLFF 155 (182)
Q Consensus 78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~--~~~l~~~~~I~~iPTl~~f 155 (182)
+.++++++|++.+...+++++|+||++||++|+.+.|.|+++++++.+.+.++.+|+++ +.+++++|+|+++||+++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF 81 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence 67899999999888889999999999999999999999999999999889999999998 8899999999999999999
Q ss_pred ECCe-----EEEEEEcCCCHHHHHHHHH
Q 030165 156 KNGE-----KKESIIGAVPKSTLSSTLD 178 (182)
Q Consensus 156 ~~G~-----~v~~~~G~~~~~~l~~~l~ 178 (182)
++|+ ....+.|..+.++|.+||.
T Consensus 82 ~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 82 RPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred eCCCcccccccccccCccCHHHHHHHhC
Confidence 9886 4567889999999999973
No 21
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.89 E-value=1.4e-22 Score=141.41 Aligned_cols=98 Identities=30% Similarity=0.656 Sum_probs=90.0
Q ss_pred cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165 78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTDDSPNIATKYGIRSIPTVLF 154 (182)
Q Consensus 78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d~~~~l~~~~~I~~iPTl~~ 154 (182)
+.++++++|++.+.. ++++|+||++||++|+.+.|.++++++++.+ ++.++++|++.+..++++|+|.++||+++
T Consensus 2 ~~~l~~~~f~~~~~~--~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHIAE--GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHhhc--CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 578899999996643 3599999999999999999999999999976 69999999999999999999999999999
Q ss_pred EECCeEEEEEEcCCCHHHHHHHH
Q 030165 155 FKNGEKKESIIGAVPKSTLSSTL 177 (182)
Q Consensus 155 f~~G~~v~~~~G~~~~~~l~~~l 177 (182)
|++|+++.++.|..+.++|.+||
T Consensus 80 ~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCCeeeEeeCCCCHHHHHhhC
Confidence 99999999999999999988875
No 22
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.89 E-value=2e-22 Score=141.03 Aligned_cols=99 Identities=26% Similarity=0.555 Sum_probs=88.6
Q ss_pred ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165 77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDSPNIATKYGIRSIPTVLFF 155 (182)
Q Consensus 77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f 155 (182)
.+.+++.++|++.+ . + .++|+|||+||++|+++.|.|+++++.+.+ ++.++++|+++++.++++|+|+++||+++|
T Consensus 2 ~v~~l~~~~f~~~~-~-~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02994 2 NVVELTDSNWTLVL-E-G-EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHA 78 (101)
T ss_pred ceEEcChhhHHHHh-C-C-CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEe
Confidence 47889999999854 3 3 379999999999999999999999998764 599999999999999999999999999999
Q ss_pred ECCeEEEEEEcCCCHHHHHHHHHH
Q 030165 156 KNGEKKESIIGAVPKSTLSSTLDK 179 (182)
Q Consensus 156 ~~G~~v~~~~G~~~~~~l~~~l~~ 179 (182)
++|+. .++.|..+.++|.+||++
T Consensus 79 ~~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 79 KDGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CCCCE-EEecCCCCHHHHHHHHhC
Confidence 99974 788999999999999863
No 23
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.89 E-value=4.6e-22 Score=137.88 Aligned_cols=101 Identities=57% Similarity=1.123 Sum_probs=94.1
Q ss_pred cChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeE
Q 030165 81 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK 160 (182)
Q Consensus 81 l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~ 160 (182)
++.++|.+.+...+++++|+||++||++|+.+.+.|+++++++++++.|+.+|++++..++++|+|.++||+++|++|+.
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKE 80 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcE
Confidence 46778888777777899999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHHHHh
Q 030165 161 KESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 161 v~~~~G~~~~~~l~~~l~~~l 181 (182)
+.++.|..+.+++.++|++.|
T Consensus 81 ~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 81 VDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred eeeecCCCCHHHHHHHHHhhC
Confidence 999999999999999998864
No 24
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.89 E-value=3.2e-22 Score=139.83 Aligned_cols=100 Identities=33% Similarity=0.637 Sum_probs=92.7
Q ss_pred cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC
Q 030165 78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN 157 (182)
Q Consensus 78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~ 157 (182)
+.++++++|++.+...+++++|+||++||++|+++.|.|+++++++.+++.++.+|++++.+++++|+|+++||+++|++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~ 81 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGA 81 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECC
Confidence 67889999999777778889999999999999999999999999998889999999999999999999999999999998
Q ss_pred C-eEEEEEEcCCCHHHHHHHH
Q 030165 158 G-EKKESIIGAVPKSTLSSTL 177 (182)
Q Consensus 158 G-~~v~~~~G~~~~~~l~~~l 177 (182)
| +....+.|..+.++|.+|+
T Consensus 82 ~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 82 GKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCcceeecCCCCCHHHHHHHh
Confidence 8 5566888999999999986
No 25
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.89 E-value=3.5e-22 Score=158.87 Aligned_cols=107 Identities=32% Similarity=0.587 Sum_probs=98.6
Q ss_pred cCccEEcChhhHHHHHHcC----CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCccc
Q 030165 75 VNEVQVVTDSSWENLVISS----ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIP 150 (182)
Q Consensus 75 ~~~v~~l~~~~~~~~~~~~----~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iP 150 (182)
...+.++++++|++.+..+ +++++|+|||+||++|+.+.|.++++++++.+.+.++++|++++++++++|+|+++|
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P 108 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP 108 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence 3568999999999976543 589999999999999999999999999999988999999999999999999999999
Q ss_pred EEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 151 TVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 151 Tl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
|+++|++|+.+....|..+.++|.+|+++.+
T Consensus 109 Tl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 109 TLLLFDKGKMYQYEGGDRSTEKLAAFALGDF 139 (224)
T ss_pred EEEEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence 9999999999888889999999999998764
No 26
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.89 E-value=5.4e-22 Score=142.38 Aligned_cols=91 Identities=29% Similarity=0.524 Sum_probs=82.3
Q ss_pred CccEEcCh-hhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165 76 NEVQVVTD-SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF 154 (182)
Q Consensus 76 ~~v~~l~~-~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~ 154 (182)
+.+.++++ ++|.+.+ .++++++|+||++||++|+.+.|.++++++++++ +.|++||.+++++++++|+|+++||+++
T Consensus 4 g~v~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~vPt~l~ 81 (113)
T cd02989 4 GKYREVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVLPTVIL 81 (113)
T ss_pred CCeEEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCccCCEEEE
Confidence 45677777 8888854 5678999999999999999999999999999875 8999999999999999999999999999
Q ss_pred EECCeEEEEEEcCC
Q 030165 155 FKNGEKKESIIGAV 168 (182)
Q Consensus 155 f~~G~~v~~~~G~~ 168 (182)
|++|++++++.|..
T Consensus 82 fk~G~~v~~~~g~~ 95 (113)
T cd02989 82 FKNGKTVDRIVGFE 95 (113)
T ss_pred EECCEEEEEEECcc
Confidence 99999999988754
No 27
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.89 E-value=1.4e-22 Score=142.40 Aligned_cols=84 Identities=20% Similarity=0.472 Sum_probs=79.0
Q ss_pred cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC-CChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCH
Q 030165 92 SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD-DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPK 170 (182)
Q Consensus 92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d-~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~ 170 (182)
..+++++|+|||+||++|+++.|.|+++++++++ +.++++|.+ +++.++++|+|+++||+++|++| .+.++.|..+.
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~ 93 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTL 93 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCH
Confidence 5789999999999999999999999999999975 889999999 78999999999999999999999 88999999999
Q ss_pred HHHHHHH
Q 030165 171 STLSSTL 177 (182)
Q Consensus 171 ~~l~~~l 177 (182)
++|.+||
T Consensus 94 ~~l~~f~ 100 (100)
T cd02999 94 DSLAAFY 100 (100)
T ss_pred HHHHhhC
Confidence 9999885
No 28
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.88 E-value=7.2e-23 Score=146.68 Aligned_cols=91 Identities=27% Similarity=0.533 Sum_probs=83.7
Q ss_pred CccEEcChhhHHHHHHcC--CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165 76 NEVQVVTDSSWENLVISS--ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVL 153 (182)
Q Consensus 76 ~~v~~l~~~~~~~~~~~~--~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~ 153 (182)
+.+.+++.++|.+.+... +++++|+||++||++|+.+.|.|+++++++++ +.|+++|++++ +++++|+|+++||++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~-~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA-FLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence 567889999999977665 48999999999999999999999999999975 89999999999 999999999999999
Q ss_pred EEECCeEEEEEEcCC
Q 030165 154 FFKNGEKKESIIGAV 168 (182)
Q Consensus 154 ~f~~G~~v~~~~G~~ 168 (182)
+|++|+.++++.|..
T Consensus 82 ~f~~G~~v~~~~G~~ 96 (113)
T cd02957 82 VYKNGELIDNIVGFE 96 (113)
T ss_pred EEECCEEEEEEecHH
Confidence 999999999999854
No 29
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.88 E-value=8e-22 Score=146.91 Aligned_cols=99 Identities=32% Similarity=0.655 Sum_probs=88.9
Q ss_pred hhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC--hHHHHHcCCCcccEEEEE-ECCe
Q 030165 83 DSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS--PNIATKYGIRSIPTVLFF-KNGE 159 (182)
Q Consensus 83 ~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~--~~l~~~~~I~~iPTl~~f-~~G~ 159 (182)
..+|+. ++..++++||+|||+||++|+.+.|.++++++++.+++.|+.+|+|.. .+++++|+|+++||+++| ++|+
T Consensus 10 ~~~~~~-a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~ 88 (142)
T cd02950 10 STPPEV-ALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN 88 (142)
T ss_pred cCCHHH-HHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC
Confidence 345665 557889999999999999999999999999999988889999998865 578999999999999999 4899
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhC
Q 030165 160 KKESIIGAVPKSTLSSTLDKYVE 182 (182)
Q Consensus 160 ~v~~~~G~~~~~~l~~~l~~~l~ 182 (182)
++.++.|..+.++|.++|+++++
T Consensus 89 ~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 89 EEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHc
Confidence 99999999999999999998874
No 30
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.88 E-value=1.1e-21 Score=137.31 Aligned_cols=99 Identities=27% Similarity=0.575 Sum_probs=90.3
Q ss_pred cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCCC--ChHHHHHcCCCcccEEE
Q 030165 78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA--GKVACFKLNTDD--SPNIATKYGIRSIPTVL 153 (182)
Q Consensus 78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~--~~v~~~~vd~d~--~~~l~~~~~I~~iPTl~ 153 (182)
+.++++++|++.+ +.+++++|+||++||++|+.+.|.++++++.+. +.+.++++|+++ +..++++|+|+++||++
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 5778999999855 556699999999999999999999999999987 568899999998 89999999999999999
Q ss_pred EEECCeEEEEEEcCCCHHHHHHHH
Q 030165 154 FFKNGEKKESIIGAVPKSTLSSTL 177 (182)
Q Consensus 154 ~f~~G~~v~~~~G~~~~~~l~~~l 177 (182)
+|++|+.+.++.|..+.+++.+||
T Consensus 81 ~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCCeeEEeCCCCCHHHHHhhC
Confidence 999999999999999999998875
No 31
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.87 E-value=1.8e-21 Score=138.62 Aligned_cols=98 Identities=15% Similarity=0.302 Sum_probs=84.0
Q ss_pred hhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEE
Q 030165 83 DSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKK 161 (182)
Q Consensus 83 ~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v 161 (182)
.++|++.+.. .+++|||+|||+||++|+.+.|.|+++++++++.+.|++||+|+.++++++|+|++.||+++|+||+-+
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 3567776664 599999999999999999999999999999986699999999999999999999999999999999977
Q ss_pred EEEEcC----------CCHHHHHHHHHHH
Q 030165 162 ESIIGA----------VPKSTLSSTLDKY 180 (182)
Q Consensus 162 ~~~~G~----------~~~~~l~~~l~~~ 180 (182)
.-..|. .++++|.+.++-+
T Consensus 82 ~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 82 KVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred EEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 654442 2467787777643
No 32
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.87 E-value=1.6e-21 Score=135.61 Aligned_cols=100 Identities=33% Similarity=0.695 Sum_probs=91.8
Q ss_pred cChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCCCChHHHHHcCCCcccEEEEEECC
Q 030165 81 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTDDSPNIATKYGIRSIPTVLFFKNG 158 (182)
Q Consensus 81 l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~--~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G 158 (182)
+++++|++.+ ..+++++|+||++||++|+.+.+.++++++.+.+ ++.++.+|++++.+++++|+|+++|++++|++|
T Consensus 1 l~~~~~~~~~-~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIV-LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHh-ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 4678899865 4889999999999999999999999999999987 699999999999999999999999999999988
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHh
Q 030165 159 EKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 159 ~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
+...++.|..+.++|..||++.+
T Consensus 80 ~~~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 80 KKPVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred CcceeecCCCCHHHHHHHHHhcC
Confidence 77888999999999999999764
No 33
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.87 E-value=3.5e-21 Score=134.10 Aligned_cols=93 Identities=32% Similarity=0.587 Sum_probs=87.4
Q ss_pred HHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEE
Q 030165 86 WENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESII 165 (182)
Q Consensus 86 ~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~ 165 (182)
++..+.+.+++++|+||++||+.|+.+.|.++++++++.+++.++++|.+++++++++|+|.++||+++|++|+++.++.
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~ 84 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEIS 84 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEe
Confidence 45666778999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHH
Q 030165 166 GAVPKSTLSSTLD 178 (182)
Q Consensus 166 G~~~~~~l~~~l~ 178 (182)
|..+.++|.++|+
T Consensus 85 g~~~~~~~~~~l~ 97 (97)
T cd02949 85 GVKMKSEYREFIE 97 (97)
T ss_pred CCccHHHHHHhhC
Confidence 9999999998874
No 34
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.87 E-value=3.4e-21 Score=133.45 Aligned_cols=95 Identities=32% Similarity=0.705 Sum_probs=84.3
Q ss_pred ChhhHHHHHHcC-CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeE
Q 030165 82 TDSSWENLVISS-ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK 160 (182)
Q Consensus 82 ~~~~~~~~~~~~-~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~ 160 (182)
+.++|++.+... +++++|+||++||++|+.+.+.|+++++++..++.++++|.+++++++++|+|.++||+++|++|++
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTI 80 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEE
Confidence 356788866554 6999999999999999999999999999976689999999999999999999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHH
Q 030165 161 KESIIGAVPKSTLSSTL 177 (182)
Q Consensus 161 v~~~~G~~~~~~l~~~l 177 (182)
+.+..|. ..++|.++|
T Consensus 81 ~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 81 VDRVSGA-DPKELAKKV 96 (97)
T ss_pred EEEEeCC-CHHHHHHhh
Confidence 9999995 566676665
No 35
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.87 E-value=3.5e-21 Score=144.83 Aligned_cols=91 Identities=24% Similarity=0.480 Sum_probs=83.8
Q ss_pred CccEEcChhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCc-----
Q 030165 76 NEVQVVTDSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDSPNIATKYGIRS----- 148 (182)
Q Consensus 76 ~~v~~l~~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~~~l~~~~~I~~----- 148 (182)
..+.+++.++|++.+.. .+++++|+||++||++|+++.|.|+++++++++ ++.|++||+|++++++++|+|.+
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 56888999999987654 457999999999999999999999999999974 59999999999999999999998
Q ss_pred -ccEEEEEECCeEEEEEEc
Q 030165 149 -IPTVLFFKNGEKKESIIG 166 (182)
Q Consensus 149 -iPTl~~f~~G~~v~~~~G 166 (182)
+||+++|++|+++.++.|
T Consensus 108 ~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 108 QLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCCEEEEEECCEEEEEEec
Confidence 999999999999999997
No 36
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.86 E-value=2.7e-21 Score=135.11 Aligned_cols=99 Identities=33% Similarity=0.711 Sum_probs=90.2
Q ss_pred cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165 78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTDDSPNIATKYGIRSIPTVLFF 155 (182)
Q Consensus 78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~--~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f 155 (182)
+.++++++|++.+...+++++|+||++||++|+.+.|.++++++.+.+ ++.++++|++++ +++..+++.++||+++|
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF 80 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence 678999999998878889999999999999999999999999999876 599999999987 68889999999999999
Q ss_pred ECCe--EEEEEEcCCCHHHHHHHH
Q 030165 156 KNGE--KKESIIGAVPKSTLSSTL 177 (182)
Q Consensus 156 ~~G~--~v~~~~G~~~~~~l~~~l 177 (182)
++|+ ...++.|..+.++|.+||
T Consensus 81 ~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcCCceEccCCcCHHHHHhhC
Confidence 9887 667889999999998885
No 37
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.86 E-value=3e-21 Score=134.93 Aligned_cols=100 Identities=36% Similarity=0.687 Sum_probs=90.7
Q ss_pred cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCCC-ChHHHHHcCCCcccEEEE
Q 030165 78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA--GKVACFKLNTDD-SPNIATKYGIRSIPTVLF 154 (182)
Q Consensus 78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~--~~v~~~~vd~d~-~~~l~~~~~I~~iPTl~~ 154 (182)
+.++++++|++.+...+++++|+||++||++|+.+.|.++++++++. +++.++.+|++. +..++++|+|+++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 57789999999776677899999999999999999999999999987 469999999999 999999999999999999
Q ss_pred EECC-eEEEEEEcCCCHHHHHHHH
Q 030165 155 FKNG-EKKESIIGAVPKSTLSSTL 177 (182)
Q Consensus 155 f~~G-~~v~~~~G~~~~~~l~~~l 177 (182)
|++| +....+.|..+.++|.+||
T Consensus 82 ~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHHHHHhhC
Confidence 9866 6777888999999998875
No 38
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.86 E-value=7.5e-21 Score=146.29 Aligned_cols=103 Identities=18% Similarity=0.341 Sum_probs=89.9
Q ss_pred cCccEEcCh-hhHHHHHHcCC--CcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccE
Q 030165 75 VNEVQVVTD-SSWENLVISSE--NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPT 151 (182)
Q Consensus 75 ~~~v~~l~~-~~~~~~~~~~~--~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPT 151 (182)
-+.+.+++. ++|.+.+...+ .+|||+||++||++|+.+.|.|++++++|+ .++|++||+++. .++.+|+|+++||
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPT 138 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPA 138 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCE
Confidence 477888988 99999776544 499999999999999999999999999997 499999999988 8999999999999
Q ss_pred EEEEECCeEEEEEEcCC-------CHHHHHHHHHH
Q 030165 152 VLFFKNGEKKESIIGAV-------PKSTLSSTLDK 179 (182)
Q Consensus 152 l~~f~~G~~v~~~~G~~-------~~~~l~~~l~~ 179 (182)
+++|++|+.+.++.|.. +.++|+.+|.+
T Consensus 139 lllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 139 LLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred EEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 99999999999998753 45666666654
No 39
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.85 E-value=3.1e-21 Score=135.81 Aligned_cols=94 Identities=18% Similarity=0.438 Sum_probs=84.1
Q ss_pred hhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCC----ChHHHHHcCCCcccEEEEEE
Q 030165 84 SSWENLVISSENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDD----SPNIATKYGIRSIPTVLFFK 156 (182)
Q Consensus 84 ~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~----~~~l~~~~~I~~iPTl~~f~ 156 (182)
+.|.+ ++.++++++|+||++||++|+++.+.+ +++++.+.+++.++.+|.++ ..+++++|+|.++||+++|+
T Consensus 2 ~~~~~-~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~ 80 (104)
T cd02953 2 AALAQ-ALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG 80 (104)
T ss_pred HHHHH-HHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 45666 557889999999999999999999988 68888888789999999987 56899999999999999997
Q ss_pred --CCeEEEEEEcCCCHHHHHHHHH
Q 030165 157 --NGEKKESIIGAVPKSTLSSTLD 178 (182)
Q Consensus 157 --~G~~v~~~~G~~~~~~l~~~l~ 178 (182)
+|+.+.++.|..+.++|.++|+
T Consensus 81 ~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 81 PGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCCcccccccCHHHHHHHhC
Confidence 8999999999999999998874
No 40
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.85 E-value=1.8e-20 Score=134.45 Aligned_cols=91 Identities=22% Similarity=0.362 Sum_probs=82.5
Q ss_pred HcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEE--EEEcCC
Q 030165 91 ISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKE--SIIGAV 168 (182)
Q Consensus 91 ~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~--~~~G~~ 168 (182)
+..+..++|+||++||++|+.+.|.++++++.+ +++.++++|.|++++++++|+|+++||+++|++|+... ++.|..
T Consensus 19 l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~ 97 (113)
T cd02975 19 MKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLP 97 (113)
T ss_pred hCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecC
Confidence 356778999999999999999999999999887 56999999999999999999999999999999876555 788999
Q ss_pred CHHHHHHHHHHHhC
Q 030165 169 PKSTLSSTLDKYVE 182 (182)
Q Consensus 169 ~~~~l~~~l~~~l~ 182 (182)
+..+|.++|+.++.
T Consensus 98 ~~~el~~~i~~i~~ 111 (113)
T cd02975 98 AGYEFASLIEDIVR 111 (113)
T ss_pred chHHHHHHHHHHHh
Confidence 99999999998863
No 41
>PTZ00051 thioredoxin; Provisional
Probab=99.85 E-value=3.3e-20 Score=128.80 Aligned_cols=93 Identities=39% Similarity=0.764 Sum_probs=82.0
Q ss_pred EEcC-hhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC
Q 030165 79 QVVT-DSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN 157 (182)
Q Consensus 79 ~~l~-~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~ 157 (182)
++++ .++|.+ +...+++++|+||++||++|+.+.+.|+++++++.+ +.|+.+|.+++.+++++|+|+++||+++|++
T Consensus 3 ~~i~~~~~~~~-~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 80 (98)
T PTZ00051 3 HIVTSQAEFES-TLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDELSEVAEKENITSMPTFKVFKN 80 (98)
T ss_pred EEecCHHHHHH-HHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcchHHHHHHCCCceeeEEEEEeC
Confidence 4444 456666 567889999999999999999999999999998865 8999999999999999999999999999999
Q ss_pred CeEEEEEEcCCCHHHHH
Q 030165 158 GEKKESIIGAVPKSTLS 174 (182)
Q Consensus 158 G~~v~~~~G~~~~~~l~ 174 (182)
|++++++.|. ..++|.
T Consensus 81 g~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 81 GSVVDTLLGA-NDEALK 96 (98)
T ss_pred CeEEEEEeCC-CHHHhh
Confidence 9999999995 556554
No 42
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.84 E-value=2.6e-20 Score=132.47 Aligned_cols=101 Identities=28% Similarity=0.488 Sum_probs=87.4
Q ss_pred ccEEcChhhHHHHHH--cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC-ChHHHH-HcCCCcccE
Q 030165 77 EVQVVTDSSWENLVI--SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD-SPNIAT-KYGIRSIPT 151 (182)
Q Consensus 77 ~v~~l~~~~~~~~~~--~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~-~~~l~~-~~~I~~iPT 151 (182)
.+.+++.++|+.++. .++++++|.||++||++|+++.|.++++++.+.+ ++.++.+|+|. +..++. .|+|+++||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 478899999999774 4689999999999999999999999999999986 49999999998 577876 499999999
Q ss_pred EEEEECC-eEEEEEEcC-CCHHHHHHHH
Q 030165 152 VLFFKNG-EKKESIIGA-VPKSTLSSTL 177 (182)
Q Consensus 152 l~~f~~G-~~v~~~~G~-~~~~~l~~~l 177 (182)
+++|++| +....+.|. .+.+.|..||
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999765 567778885 6888888875
No 43
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.84 E-value=3.5e-20 Score=130.55 Aligned_cols=94 Identities=29% Similarity=0.581 Sum_probs=83.0
Q ss_pred hhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeE
Q 030165 84 SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK 160 (182)
Q Consensus 84 ~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~ 160 (182)
++|++ + ..+++++|+||++||++|+++.|.|+++++++.+ .+.++.+|++..++++++|+|+++||+++|++|.
T Consensus 7 ~~~~~-~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~- 83 (104)
T cd03000 7 DSFKD-V-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL- 83 (104)
T ss_pred hhhhh-h-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-
Confidence 56776 3 4467999999999999999999999999999843 4899999999999999999999999999997774
Q ss_pred EEEEEcCCCHHHHHHHHHHH
Q 030165 161 KESIIGAVPKSTLSSTLDKY 180 (182)
Q Consensus 161 v~~~~G~~~~~~l~~~l~~~ 180 (182)
..++.|..+.++|.+|+++.
T Consensus 84 ~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 84 AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred ceeecCCCCHHHHHHHHHhh
Confidence 56788999999999999874
No 44
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.84 E-value=6.1e-20 Score=133.47 Aligned_cols=100 Identities=13% Similarity=0.275 Sum_probs=83.2
Q ss_pred CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh-----------HHHHHc
Q 030165 76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP-----------NIATKY 144 (182)
Q Consensus 76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~-----------~l~~~~ 144 (182)
.....++.+++.+ ...+++.++|+||++||++|+++.|.|++++++. ++.++++|+|.+. ++.++|
T Consensus 6 ~~~~~it~~~~~~-~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 6 KGLEVTTVVRALE-ALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRF 82 (122)
T ss_pred ccceecCHHHHHH-HHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence 3467788899998 4467888999999999999999999999999983 4778888888543 456776
Q ss_pred CC----CcccEEEEEECCeEEEEEEc-CCCHHHHHHHHH
Q 030165 145 GI----RSIPTVLFFKNGEKKESIIG-AVPKSTLSSTLD 178 (182)
Q Consensus 145 ~I----~~iPTl~~f~~G~~v~~~~G-~~~~~~l~~~l~ 178 (182)
++ .++||+++|++|+++.+..| ..+.++|.+++.
T Consensus 83 ~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 83 GIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 65 45999999999999999999 556999988864
No 45
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.2e-20 Score=147.65 Aligned_cols=102 Identities=38% Similarity=0.752 Sum_probs=90.5
Q ss_pred cEEc-ChhhHHHHHH-cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165 78 VQVV-TDSSWENLVI-SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF 155 (182)
Q Consensus 78 v~~l-~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f 155 (182)
|+.+ ++.+|+..+. ...+.|+|+|+|+|||||++++|+|++++.+|++ ..|++||+|+++..+..+||.+.||+++|
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c~~taa~~gV~amPTFiff 81 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDECRGTAATNGVNAMPTFIFF 81 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHhhchhhhcCcccCceEEEE
Confidence 3444 5677877554 4568999999999999999999999999999986 89999999999999999999999999999
Q ss_pred ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 156 KNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 156 ~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
.||..++++.|+ ++..|++.+.+++
T Consensus 82 ~ng~kid~~qGA-d~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 82 RNGVKIDQIQGA-DASGLEEKVAKYA 106 (288)
T ss_pred ecCeEeeeecCC-CHHHHHHHHHHHh
Confidence 999999999995 7788999988875
No 46
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.83 E-value=3.5e-20 Score=127.56 Aligned_cols=97 Identities=37% Similarity=0.744 Sum_probs=87.5
Q ss_pred EcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHh--cCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC
Q 030165 80 VVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEY--AGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN 157 (182)
Q Consensus 80 ~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~--~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~ 157 (182)
+++.++|.+.+ .++++++|+||++||++|+.+.+.++++++.+ .+.+.++.+|++++..++++|+|+++||+++|++
T Consensus 2 ~l~~~~~~~~i-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELV-KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHH-hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 57888999844 44559999999999999999999999999999 5779999999999999999999999999999987
Q ss_pred C-eEEEEEEcCCCHHHHHHHH
Q 030165 158 G-EKKESIIGAVPKSTLSSTL 177 (182)
Q Consensus 158 G-~~v~~~~G~~~~~~l~~~l 177 (182)
| +...++.|..+.+++.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 7 8888999999999998874
No 47
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.82 E-value=2.3e-19 Score=130.24 Aligned_cols=97 Identities=22% Similarity=0.396 Sum_probs=83.5
Q ss_pred hHHHHHHcCC-CcEEEEEEcCCChhhhhhhHHHH---HHHHHhcCceEEEEEeCCCC-------------hHHHHHcCCC
Q 030165 85 SWENLVISSE-NPVLVEFWAPWCGPCRMIAPAIE---ELAKEYAGKVACFKLNTDDS-------------PNIATKYGIR 147 (182)
Q Consensus 85 ~~~~~~~~~~-~~vlV~F~a~wC~~C~~~~p~l~---~~a~~~~~~v~~~~vd~d~~-------------~~l~~~~~I~ 147 (182)
++++ +++++ ++++|+||++||++|+.+.+.+. ++.+.+.+++.++.+|.++. .+++.+|+|+
T Consensus 5 ~~~~-a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 5 DLAE-AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHH-HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 4444 55677 99999999999999999999884 56667766789999999865 6899999999
Q ss_pred cccEEEEEE-C-CeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165 148 SIPTVLFFK-N-GEKKESIIGAVPKSTLSSTLDKYVE 182 (182)
Q Consensus 148 ~iPTl~~f~-~-G~~v~~~~G~~~~~~l~~~l~~~l~ 182 (182)
++||+++|. + |+++.++.|..+.+++.++|+++++
T Consensus 84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 84 FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 999999997 4 6999999999999999999998763
No 48
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.81 E-value=2.7e-19 Score=139.52 Aligned_cols=101 Identities=21% Similarity=0.399 Sum_probs=87.6
Q ss_pred cCccEEcChhhHHHHHHcC--CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEE
Q 030165 75 VNEVQVVTDSSWENLVISS--ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTV 152 (182)
Q Consensus 75 ~~~v~~l~~~~~~~~~~~~--~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl 152 (182)
-+.+.+++.++|...+... +.+|||+||++||++|+.+.|.|++++++|+. ++|+++|++.. ..+|+|+++||+
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-vkFvkI~ad~~---~~~~~i~~lPTl 156 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-TKFVKIISTQC---IPNYPDKNLPTI 156 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-CEEEEEEhHHh---HhhCCCCCCCEE
Confidence 4789999999999877654 35899999999999999999999999999974 99999999863 689999999999
Q ss_pred EEEECCeEEEEEEcC-------CCHHHHHHHHHH
Q 030165 153 LFFKNGEKKESIIGA-------VPKSTLSSTLDK 179 (182)
Q Consensus 153 ~~f~~G~~v~~~~G~-------~~~~~l~~~l~~ 179 (182)
++|+||+.++++.|. .+.++|..+|.+
T Consensus 157 liyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 157 LVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 999999999999985 356667666654
No 49
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.79 E-value=5e-19 Score=127.07 Aligned_cols=83 Identities=28% Similarity=0.598 Sum_probs=75.0
Q ss_pred ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCC--CChHHHHHcCCCcccE
Q 030165 77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTD--DSPNIATKYGIRSIPT 151 (182)
Q Consensus 77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d--~~~~l~~~~~I~~iPT 151 (182)
.+.+++.++|++.+...+++++|+||++||++|+.+.|.|+++++++.+ .+.|+++|++ .+.+++++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 5788999999998888889999999999999999999999999998753 5899999975 4678999999999999
Q ss_pred EEEEECCe
Q 030165 152 VLFFKNGE 159 (182)
Q Consensus 152 l~~f~~G~ 159 (182)
+++|++|+
T Consensus 82 ~~lf~~~~ 89 (114)
T cd02992 82 LRYFPPFS 89 (114)
T ss_pred EEEECCCC
Confidence 99999887
No 50
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.2e-19 Score=154.38 Aligned_cols=106 Identities=33% Similarity=0.625 Sum_probs=98.6
Q ss_pred ccCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCccc
Q 030165 74 AVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTDDSPNIATKYGIRSIP 150 (182)
Q Consensus 74 ~~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d~~~~l~~~~~I~~iP 150 (182)
....+.+++.++|+. .+..+..++|.||||||++|+.++|.|++.++.+.. .+..++||+.++.+++.+|+|+++|
T Consensus 23 ~~~~Vl~Lt~dnf~~-~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKE-TINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred cccceEEEecccHHH-HhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 357789999999999 668889999999999999999999999999999865 5899999999999999999999999
Q ss_pred EEEEEECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165 151 TVLFFKNGEKKESIIGAVPKSTLSSTLDKY 180 (182)
Q Consensus 151 Tl~~f~~G~~v~~~~G~~~~~~l~~~l~~~ 180 (182)
|+.+|+||+....+.|....+.+..|+.+.
T Consensus 102 TlkiFrnG~~~~~Y~G~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 102 TLKIFRNGRSAQDYNGPREADGIVKWLKKQ 131 (493)
T ss_pred eEEEEecCCcceeccCcccHHHHHHHHHhc
Confidence 999999999878899999999999999875
No 51
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.79 E-value=2.6e-18 Score=115.91 Aligned_cols=92 Identities=52% Similarity=1.062 Sum_probs=83.0
Q ss_pred hHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEE
Q 030165 85 SWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 164 (182)
Q Consensus 85 ~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~ 164 (182)
+|+. ....+++++|+||++||++|+.+.+.+++++++ .+++.++.+|.+.+.+++++|++.++||+++|++|+.+..+
T Consensus 2 ~~~~-~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~ 79 (93)
T cd02947 2 EFEE-LIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRV 79 (93)
T ss_pred chHH-HHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEE
Confidence 4665 334459999999999999999999999999988 56799999999999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHH
Q 030165 165 IGAVPKSTLSSTLD 178 (182)
Q Consensus 165 ~G~~~~~~l~~~l~ 178 (182)
.|..+.++|.++|+
T Consensus 80 ~g~~~~~~l~~~i~ 93 (93)
T cd02947 80 VGADPKEELEEFLE 93 (93)
T ss_pred ecCCCHHHHHHHhC
Confidence 99999899988873
No 52
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.79 E-value=2e-18 Score=149.28 Aligned_cols=104 Identities=32% Similarity=0.645 Sum_probs=95.1
Q ss_pred ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165 77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTDDSPNIATKYGIRSIPTVL 153 (182)
Q Consensus 77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d~~~~l~~~~~I~~iPTl~ 153 (182)
.+.++++++|++.+ ..+++++|+|||+||++|+.+.|.++++++.+.+ ++.|+.+|++++.+++++|+|.++||++
T Consensus 2 ~v~~l~~~~~~~~i-~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 80 (462)
T TIGR01130 2 DVLVLTKDNFDDFI-KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLK 80 (462)
T ss_pred CceECCHHHHHHHH-hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEE
Confidence 47889999999855 6678999999999999999999999999988764 3999999999999999999999999999
Q ss_pred EEECCeE-EEEEEcCCCHHHHHHHHHHHh
Q 030165 154 FFKNGEK-KESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 154 ~f~~G~~-v~~~~G~~~~~~l~~~l~~~l 181 (182)
+|++|+. +.++.|..+.+.|.+|+.+.+
T Consensus 81 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~ 109 (462)
T TIGR01130 81 IFRNGEDSVSDYNGPRDADGIVKYMKKQS 109 (462)
T ss_pred EEeCCccceeEecCCCCHHHHHHHHHHhc
Confidence 9999988 788999999999999998875
No 53
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.78 E-value=1.8e-18 Score=150.03 Aligned_cols=106 Identities=27% Similarity=0.448 Sum_probs=90.6
Q ss_pred cCccEEcChhhHHHHHH--cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCCCh-HHH-HHcCCCcc
Q 030165 75 VNEVQVVTDSSWENLVI--SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSP-NIA-TKYGIRSI 149 (182)
Q Consensus 75 ~~~v~~l~~~~~~~~~~--~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~~~-~l~-~~~~I~~i 149 (182)
...|.+++.++|++++. ..++++||+|||+||++|+.+.|.|+++++++.++ +.|+++|+|.+. +++ ++|+|+++
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~ 429 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 429 (463)
T ss_pred CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCcc
Confidence 45789999999999764 57899999999999999999999999999999764 899999999764 454 78999999
Q ss_pred cEEEEEECCe-EEEEEE-cCCCHHHHHHHHHHH
Q 030165 150 PTVLFFKNGE-KKESII-GAVPKSTLSSTLDKY 180 (182)
Q Consensus 150 PTl~~f~~G~-~v~~~~-G~~~~~~l~~~l~~~ 180 (182)
||+++|++|+ ....+. |..+.+.|..||+.+
T Consensus 430 PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 430 PTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred ceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 9999999885 334454 578999999999764
No 54
>PTZ00102 disulphide isomerase; Provisional
Probab=99.78 E-value=1.9e-18 Score=150.65 Aligned_cols=107 Identities=28% Similarity=0.578 Sum_probs=97.5
Q ss_pred cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCCCChHHHHHcCCCcccEE
Q 030165 75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTDDSPNIATKYGIRSIPTV 152 (182)
Q Consensus 75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~--~v~~~~vd~d~~~~l~~~~~I~~iPTl 152 (182)
...+..+++++|++.+.+++++|+|+|||+||++|+.+.|.|+++++.+.+ .+.++++|.+.+...+++|+|+++||+
T Consensus 356 ~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~ 435 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTI 435 (477)
T ss_pred CCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeE
Confidence 456888999999998888999999999999999999999999999998864 589999999999999999999999999
Q ss_pred EEEECCeEE-EEEEcCCCHHHHHHHHHHHh
Q 030165 153 LFFKNGEKK-ESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 153 ~~f~~G~~v-~~~~G~~~~~~l~~~l~~~l 181 (182)
++|++|+.+ .++.|..+.+++.+||++.+
T Consensus 436 ~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 436 LFVKAGERTPIPYEGERTVEGFKEFVNKHA 465 (477)
T ss_pred EEEECCCcceeEecCcCCHHHHHHHHHHcC
Confidence 999977665 57899999999999999865
No 55
>PTZ00102 disulphide isomerase; Provisional
Probab=99.77 E-value=4.6e-18 Score=148.26 Aligned_cols=104 Identities=30% Similarity=0.649 Sum_probs=95.0
Q ss_pred CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc---CceEEEEEeCCCChHHHHHcCCCcccEE
Q 030165 76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA---GKVACFKLNTDDSPNIATKYGIRSIPTV 152 (182)
Q Consensus 76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~---~~v~~~~vd~d~~~~l~~~~~I~~iPTl 152 (182)
..+..++.++|++. ...++.++|+|||+||++|+++.|.++++++.+. .++.++.+|++++.+++++|+|+++||+
T Consensus 32 ~~v~~l~~~~f~~~-i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~ 110 (477)
T PTZ00102 32 EHVTVLTDSTFDKF-ITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTI 110 (477)
T ss_pred CCcEEcchhhHHHH-HhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEE
Confidence 56889999999994 4667899999999999999999999999997774 3599999999999999999999999999
Q ss_pred EEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 153 LFFKNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 153 ~~f~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
++|++|+.+ ++.|..+.+.|.+|+++++
T Consensus 111 ~~~~~g~~~-~y~g~~~~~~l~~~l~~~~ 138 (477)
T PTZ00102 111 KFFNKGNPV-NYSGGRTADGIVSWIKKLT 138 (477)
T ss_pred EEEECCceE-EecCCCCHHHHHHHHHHhh
Confidence 999999877 8899999999999999875
No 56
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.77 E-value=1.9e-18 Score=124.05 Aligned_cols=99 Identities=17% Similarity=0.261 Sum_probs=83.4
Q ss_pred ccEEcChhhHHHHHHcCCCcEEEEEEc--CCCh---hhhhhhHHHHHHHHHhcCceEEEEEeCC-----CChHHHHHcCC
Q 030165 77 EVQVVTDSSWENLVISSENPVLVEFWA--PWCG---PCRMIAPAIEELAKEYAGKVACFKLNTD-----DSPNIATKYGI 146 (182)
Q Consensus 77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a--~wC~---~C~~~~p~l~~~a~~~~~~v~~~~vd~d-----~~~~l~~~~~I 146 (182)
.+..+++++|++ ++.+++.+||.||| |||+ +|++++|.+.+.+. .+.+++||++ ++.+|+++|+|
T Consensus 2 g~v~L~~~nF~~-~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 2 GCVDLDTVTFYK-VIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred CeeECChhhHHH-HHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCC
Confidence 367899999999 55778899999999 9999 77777777666553 3889999994 57889999999
Q ss_pred C--cccEEEEEECCe--EEEEEEcC-CCHHHHHHHHHHH
Q 030165 147 R--SIPTVLFFKNGE--KKESIIGA-VPKSTLSSTLDKY 180 (182)
Q Consensus 147 ~--~iPTl~~f~~G~--~v~~~~G~-~~~~~l~~~l~~~ 180 (182)
+ ++||+.+|++|+ ....+.|. .+.+.|.+||.+.
T Consensus 77 ~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 77 DKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9 999999999985 44678897 9999999999863
No 57
>PLN02309 5'-adenylylsulfate reductase
Probab=99.77 E-value=4.6e-18 Score=147.36 Aligned_cols=105 Identities=29% Similarity=0.496 Sum_probs=91.4
Q ss_pred CccEEcChhhHHHHHH--cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCC-CChHHHH-HcCCCccc
Q 030165 76 NEVQVVTDSSWENLVI--SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTD-DSPNIAT-KYGIRSIP 150 (182)
Q Consensus 76 ~~v~~l~~~~~~~~~~--~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d-~~~~l~~-~~~I~~iP 150 (182)
..+.+++.++|++++. ..++++||+|||+||++|++|.|.|+++++++.+. +.|+++|+| ++.+++. +|+|.++|
T Consensus 345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~P 424 (457)
T PLN02309 345 QNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 424 (457)
T ss_pred CCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceee
Confidence 5788999999999764 57899999999999999999999999999999754 999999999 7788886 69999999
Q ss_pred EEEEEECCeE-EEEEE-cCCCHHHHHHHHHHH
Q 030165 151 TVLFFKNGEK-KESII-GAVPKSTLSSTLDKY 180 (182)
Q Consensus 151 Tl~~f~~G~~-v~~~~-G~~~~~~l~~~l~~~ 180 (182)
|+++|++|.. ...+. |..+.+.|.+||+.+
T Consensus 425 Til~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 425 TILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred EEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999987753 33454 468999999999875
No 58
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.76 E-value=5.8e-18 Score=118.36 Aligned_cols=89 Identities=19% Similarity=0.356 Sum_probs=82.2
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCC--cccEEEEEEC--CeEEEEEEcCC
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIR--SIPTVLFFKN--GEKKESIIGAV 168 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~--~iPTl~~f~~--G~~v~~~~G~~ 168 (182)
+++++++.||++||++|+++.|.++++++++.+++.|+++|.++++.+++.|||. ++|+++++++ |++.....|.+
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~ 90 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEEL 90 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCcccc
Confidence 3789999999999999999999999999999999999999999999999999999 9999999988 77766666767
Q ss_pred CHHHHHHHHHHHh
Q 030165 169 PKSTLSSTLDKYV 181 (182)
Q Consensus 169 ~~~~l~~~l~~~l 181 (182)
+.++|.+||++++
T Consensus 91 ~~~~l~~fi~~~~ 103 (103)
T cd02982 91 TAESLEEFVEDFL 103 (103)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999999864
No 59
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.76 E-value=1.5e-17 Score=111.64 Aligned_cols=81 Identities=31% Similarity=0.524 Sum_probs=74.4
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHH
Q 030165 97 VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSST 176 (182)
Q Consensus 97 vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~ 176 (182)
.+..||++||++|+.+.|.+++++++++.++.++++|.+++++++++|||+++||+++ +|+ .++.|..+.+++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHHH
Confidence 4778999999999999999999999998889999999999999999999999999986 886 378899999999999
Q ss_pred HHHHh
Q 030165 177 LDKYV 181 (182)
Q Consensus 177 l~~~l 181 (182)
|+++|
T Consensus 78 l~~~~ 82 (82)
T TIGR00411 78 IKKRL 82 (82)
T ss_pred HHhhC
Confidence 98865
No 60
>PTZ00062 glutaredoxin; Provisional
Probab=99.75 E-value=1.4e-17 Score=130.65 Aligned_cols=90 Identities=13% Similarity=0.203 Sum_probs=78.4
Q ss_pred cChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeE
Q 030165 81 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK 160 (182)
Q Consensus 81 l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~ 160 (182)
.+.+++.+.+....+.+|++|||+||++|+.+.|++++++++|+. +.|+.||.| |+|.++||+++|+||++
T Consensus 4 ~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d--------~~V~~vPtfv~~~~g~~ 74 (204)
T PTZ00062 4 IKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA--------DANNEYGVFEFYQNSQL 74 (204)
T ss_pred CCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc--------cCcccceEEEEEECCEE
Confidence 356778885544447899999999999999999999999999975 999999987 99999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHHHH
Q 030165 161 KESIIGAVPKSTLSSTLDKY 180 (182)
Q Consensus 161 v~~~~G~~~~~~l~~~l~~~ 180 (182)
++++.|+ ++.+|..++.++
T Consensus 75 i~r~~G~-~~~~~~~~~~~~ 93 (204)
T PTZ00062 75 INSLEGC-NTSTLVSFIRGW 93 (204)
T ss_pred EeeeeCC-CHHHHHHHHHHH
Confidence 9999996 577787777665
No 61
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.73 E-value=2.5e-17 Score=118.98 Aligned_cols=96 Identities=17% Similarity=0.330 Sum_probs=76.2
Q ss_pred cChhhHHHHHHcC-CCcEEEEEEc-------CCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC-------ChHHHHHcC
Q 030165 81 VTDSSWENLVISS-ENPVLVEFWA-------PWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD-------SPNIATKYG 145 (182)
Q Consensus 81 l~~~~~~~~~~~~-~~~vlV~F~a-------~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~-------~~~l~~~~~ 145 (182)
-+.++|.+.+... +++++|+||| +||++|+++.|.++++++++++++.|++||+++ +.+++.+|+
T Consensus 7 ~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~ 86 (119)
T cd02952 7 RGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK 86 (119)
T ss_pred cCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC
Confidence 3567777766543 6899999999 999999999999999999999779999999976 458999999
Q ss_pred CC-cccEEEEEECCeEEEEEEcCCCHHHHHHHH
Q 030165 146 IR-SIPTVLFFKNGEKKESIIGAVPKSTLSSTL 177 (182)
Q Consensus 146 I~-~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l 177 (182)
|. ++||+++|++|+.+... .-.+.+.+..++
T Consensus 87 I~~~iPT~~~~~~~~~l~~~-~c~~~~~~~~~~ 118 (119)
T cd02952 87 LTTGVPTLLRWKTPQRLVED-ECLQADLVEMFF 118 (119)
T ss_pred cccCCCEEEEEcCCceecch-hhcCHHHHHHhh
Confidence 98 99999999877533221 123555555443
No 62
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.72 E-value=1.6e-17 Score=119.91 Aligned_cols=94 Identities=19% Similarity=0.388 Sum_probs=73.4
Q ss_pred HHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh-HHHHHcCCCc--ccEEEEEE-CCeEEEE
Q 030165 88 NLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP-NIATKYGIRS--IPTVLFFK-NGEKKES 163 (182)
Q Consensus 88 ~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~-~l~~~~~I~~--iPTl~~f~-~G~~v~~ 163 (182)
+.+..++++++|+|||+||++|+.+.|.+.+..........|+.+|++.+. ...++|++.+ +||+++|. +|+++.+
T Consensus 13 ~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 13 KEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred HHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchh
Confidence 335678999999999999999999999999987765444577778887664 4568899987 99999995 9999885
Q ss_pred E---EcCCCHHHHHHHHHHHh
Q 030165 164 I---IGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 164 ~---~G~~~~~~l~~~l~~~l 181 (182)
+ .|..+.+.+...|+.++
T Consensus 93 ~~~~~~~~~~~~f~~~~~~~~ 113 (117)
T cd02959 93 IINKKGNPNYKYFYSSAAQVT 113 (117)
T ss_pred hccCCCCccccccCCCHHHHH
Confidence 4 45566666666665543
No 63
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.69 E-value=2e-16 Score=125.29 Aligned_cols=87 Identities=21% Similarity=0.400 Sum_probs=75.8
Q ss_pred CcEEEEEEc---CCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEE-EEEEcCCC
Q 030165 95 NPVLVEFWA---PWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKK-ESIIGAVP 169 (182)
Q Consensus 95 ~~vlV~F~a---~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v-~~~~G~~~ 169 (182)
...++.|++ +||++|+++.|.++++++++++ ++.++.+|.|++++++++|+|.++||+++|++|+.+ .++.|..+
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~ 99 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPA 99 (215)
T ss_pred CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCC
Confidence 344666877 9999999999999999999964 255777777799999999999999999999999998 48999999
Q ss_pred HHHHHHHHHHHh
Q 030165 170 KSTLSSTLDKYV 181 (182)
Q Consensus 170 ~~~l~~~l~~~l 181 (182)
.+++.+||+.++
T Consensus 100 ~~~l~~~i~~~~ 111 (215)
T TIGR02187 100 GYEFAALIEDIV 111 (215)
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 64
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.69 E-value=1.8e-16 Score=137.14 Aligned_cols=105 Identities=30% Similarity=0.611 Sum_probs=93.2
Q ss_pred cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCcccE
Q 030165 75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTDDSPNIATKYGIRSIPT 151 (182)
Q Consensus 75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d~~~~l~~~~~I~~iPT 151 (182)
.+.+..++.++|.+.+...+++++|+||++||++|+.+.|.++++++.+.+ ++.|+++|++.+. +.. |+|+++||
T Consensus 345 ~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt 422 (462)
T TIGR01130 345 EGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPT 422 (462)
T ss_pred CCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCE
Confidence 356788999999998888899999999999999999999999999999987 7999999999765 333 99999999
Q ss_pred EEEEECCeEE--EEEEcCCCHHHHHHHHHHHh
Q 030165 152 VLFFKNGEKK--ESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 152 l~~f~~G~~v--~~~~G~~~~~~l~~~l~~~l 181 (182)
+++|++|+.. ..+.|..+.+.|.+||++..
T Consensus 423 ~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 454 (462)
T TIGR01130 423 IKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHA 454 (462)
T ss_pred EEEEeCCCCcCceEecCcCCHHHHHHHHHhcC
Confidence 9999988763 57789999999999998754
No 65
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.66 E-value=1.7e-16 Score=112.58 Aligned_cols=86 Identities=27% Similarity=0.565 Sum_probs=68.2
Q ss_pred cCCCcEEEEEEcCCChhhhhhhHHHHH---HHHHhcCceEEEEEeCCCC--------------------hHHHHHcCCCc
Q 030165 92 SSENPVLVEFWAPWCGPCRMIAPAIEE---LAKEYAGKVACFKLNTDDS--------------------PNIATKYGIRS 148 (182)
Q Consensus 92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~---~a~~~~~~v~~~~vd~d~~--------------------~~l~~~~~I~~ 148 (182)
.++++++|+||++||++|+.+.+.+.+ +...+..++.++.++.+.. .+++++|||++
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 568999999999999999999999875 4445555688888888754 35899999999
Q ss_pred ccEEEEEE-CCeEEEEEEcCCCHHHHHHHH
Q 030165 149 IPTVLFFK-NGEKKESIIGAVPKSTLSSTL 177 (182)
Q Consensus 149 iPTl~~f~-~G~~v~~~~G~~~~~~l~~~l 177 (182)
+||++++. +|+++.++.|.+++++|.++|
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999995 899999999999999999875
No 66
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.65 E-value=2.2e-15 Score=116.78 Aligned_cols=87 Identities=21% Similarity=0.477 Sum_probs=73.6
Q ss_pred cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH-----------------------HHHHcCCCc
Q 030165 92 SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN-----------------------IATKYGIRS 148 (182)
Q Consensus 92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~-----------------------l~~~~~I~~ 148 (182)
..+++++|+||++||++|+...|.++++.++ .+.++.|+.+++.+ +...|||.+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 3689999999999999999999999998653 47888888755432 445789999
Q ss_pred ccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 149 IPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 149 iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
+|+.+++ ++|+.+.++.|.++.++++++|+.++
T Consensus 143 ~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 143 APETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred CCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 9976666 69999999999999999999999886
No 67
>PHA02125 thioredoxin-like protein
Probab=99.65 E-value=1.8e-15 Score=100.67 Aligned_cols=71 Identities=27% Similarity=0.574 Sum_probs=60.5
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCC-CHHHHHHH
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV-PKSTLSST 176 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~-~~~~l~~~ 176 (182)
+++||++||++|+.+.|.|+++. +.++++|.+++++++++|+|.++||++ +|+.+++..|.. +..+|++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHH
Confidence 78999999999999999998653 568999999999999999999999987 788889999963 33666554
Q ss_pred H
Q 030165 177 L 177 (182)
Q Consensus 177 l 177 (182)
|
T Consensus 73 ~ 73 (75)
T PHA02125 73 L 73 (75)
T ss_pred h
Confidence 4
No 68
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.65 E-value=1.5e-15 Score=101.42 Aligned_cols=73 Identities=21% Similarity=0.400 Sum_probs=62.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCC-CHHHHHHH
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV-PKSTLSST 176 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~-~~~~l~~~ 176 (182)
.|+||++||++|+.+.|.+++++++++.++.++++| +.+.+.+|||.++||+++ ||+++ +.|.. +.+++.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence 488999999999999999999999998888888887 344588899999999999 99877 77754 45777776
Q ss_pred H
Q 030165 177 L 177 (182)
Q Consensus 177 l 177 (182)
+
T Consensus 75 l 75 (76)
T TIGR00412 75 L 75 (76)
T ss_pred h
Confidence 5
No 69
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.64 E-value=2.7e-15 Score=118.83 Aligned_cols=96 Identities=23% Similarity=0.421 Sum_probs=80.0
Q ss_pred EEcChhhHHHHHHcCCCcE-EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC
Q 030165 79 QVVTDSSWENLVISSENPV-LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN 157 (182)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~v-lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~ 157 (182)
..++.+..+. +...++++ ++.||++||++|+.+.+.+++++.++ +++.+.++|.+++++++++|||.++||++++++
T Consensus 118 ~~L~~~~~~~-l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~ 195 (215)
T TIGR02187 118 PGLSEKTVEL-LQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEANENPDLAEKYGVMSVPKIVINKG 195 (215)
T ss_pred CCCCHHHHHH-HHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCCCCHHHHHHhCCccCCEEEEecC
Confidence 3455554544 33455665 55599999999999999999999886 469999999999999999999999999999988
Q ss_pred CeEEEEEEcCCCHHHHHHHHHH
Q 030165 158 GEKKESIIGAVPKSTLSSTLDK 179 (182)
Q Consensus 158 G~~v~~~~G~~~~~~l~~~l~~ 179 (182)
|+. +.|..+.++|.+||++
T Consensus 196 ~~~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 196 VEE---FVGAYPEEQFLEYILS 214 (215)
T ss_pred CEE---EECCCCHHHHHHHHHh
Confidence 863 8899999999999975
No 70
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.64 E-value=2.3e-15 Score=113.44 Aligned_cols=87 Identities=21% Similarity=0.485 Sum_probs=70.3
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC------------hHHH-HHc---CCCcccEEEEEE
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS------------PNIA-TKY---GIRSIPTVLFFK 156 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~------------~~l~-~~~---~I~~iPTl~~f~ 156 (182)
.++..+|+|||+||++|+++.|.++++++++. +.++.|+.|+. .+.. ..| +|.++||+++++
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID 126 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN 126 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe
Confidence 45677999999999999999999999999984 56666666643 2333 345 899999999995
Q ss_pred -CCeE-EEEEEcCCCHHHHHHHHHHHh
Q 030165 157 -NGEK-KESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 157 -~G~~-v~~~~G~~~~~~l~~~l~~~l 181 (182)
+|+. +....|.++.+++.+.|+++|
T Consensus 127 ~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 127 VNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 6665 557899999999999998875
No 71
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.64 E-value=2.8e-15 Score=109.20 Aligned_cols=98 Identities=14% Similarity=0.259 Sum_probs=77.7
Q ss_pred ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHH-H--HHHHHHhcCceEEEEEeCCCChHHHHH--------cCCCccc
Q 030165 82 TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPA-I--EELAKEYAGKVACFKLNTDDSPNIATK--------YGIRSIP 150 (182)
Q Consensus 82 ~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~-l--~~~a~~~~~~v~~~~vd~d~~~~l~~~--------~~I~~iP 150 (182)
+++.+.. +.+++|+|+|+|+++||++|++|.+. | .++++.+..++.++++|.++.++++++ ||+.++|
T Consensus 4 ~~eal~~-Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~P 82 (124)
T cd02955 4 GEEAFEK-ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWP 82 (124)
T ss_pred CHHHHHH-HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCC
Confidence 4455555 77889999999999999999999874 3 467777777799999999998887653 5999999
Q ss_pred EEEEE-ECCeEEEEEEcC-----CCHHHHHHHHHHH
Q 030165 151 TVLFF-KNGEKKESIIGA-----VPKSTLSSTLDKY 180 (182)
Q Consensus 151 Tl~~f-~~G~~v~~~~G~-----~~~~~l~~~l~~~ 180 (182)
|++++ .+|+.+....+. .+...+.++++++
T Consensus 83 t~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 83 LNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred EEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 99999 589998877665 3445677776654
No 72
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.64 E-value=6.6e-15 Score=107.79 Aligned_cols=105 Identities=18% Similarity=0.254 Sum_probs=88.7
Q ss_pred ccEEcChhhHHHHHHcCCCcEEEEEEcC--CChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165 77 EVQVVTDSSWENLVISSENPVLVEFWAP--WCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDSPNIATKYGIRSIPTVL 153 (182)
Q Consensus 77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~--wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~~~l~~~~~I~~iPTl~ 153 (182)
....++.++++..+ ..+...+|+|-.+ -++..-...-+|++++++|.+ +++|++||+|++++++.+|||+++||++
T Consensus 18 g~~~~~~~~~~~~~-~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl 96 (132)
T PRK11509 18 GWTPVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATL 96 (132)
T ss_pred CCCccccccHHHHH-hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEE
Confidence 45567778888855 4444444444432 378888899999999999984 5999999999999999999999999999
Q ss_pred EEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165 154 FFKNGEKKESIIGAVPKSTLSSTLDKYVE 182 (182)
Q Consensus 154 ~f~~G~~v~~~~G~~~~~~l~~~l~~~l~ 182 (182)
+|+||+.++++.|..+.+++.++|+++|+
T Consensus 97 ~FkdGk~v~~i~G~~~k~~l~~~I~~~L~ 125 (132)
T PRK11509 97 VFTGGNYRGVLNGIHPWAELINLMRGLVE 125 (132)
T ss_pred EEECCEEEEEEeCcCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999874
No 73
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.64 E-value=1.7e-15 Score=135.45 Aligned_cols=99 Identities=17% Similarity=0.479 Sum_probs=83.5
Q ss_pred ChhhHHHHHH---cCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCCC----hHHHHHcCCCcccE
Q 030165 82 TDSSWENLVI---SSENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDDS----PNIATKYGIRSIPT 151 (182)
Q Consensus 82 ~~~~~~~~~~---~~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~~----~~l~~~~~I~~iPT 151 (182)
+.+++++.+. .++++|+|+|||+||++|+.+++.. +++.++++ ++.++++|.+++ .+++++|+|.++||
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt 537 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPT 537 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCE
Confidence 4566766543 3579999999999999999999875 67878876 489999999854 57899999999999
Q ss_pred EEEEE-CCeEE--EEEEcCCCHHHHHHHHHHHh
Q 030165 152 VLFFK-NGEKK--ESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 152 l~~f~-~G~~v--~~~~G~~~~~~l~~~l~~~l 181 (182)
+++|+ ||+++ .++.|..+++++.++++++.
T Consensus 538 ~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 538 ILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred EEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 99996 88884 68899999999999999864
No 74
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.63 E-value=1.8e-15 Score=132.96 Aligned_cols=90 Identities=20% Similarity=0.481 Sum_probs=77.0
Q ss_pred HHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc-CceEEEEEe----------------------------CCCChHH
Q 030165 90 VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA-GKVACFKLN----------------------------TDDSPNI 140 (182)
Q Consensus 90 ~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~-~~v~~~~vd----------------------------~d~~~~l 140 (182)
.++.+++|||+|||+||++|+.+.|.|+++++++. +++.++.|. .|.+..+
T Consensus 52 ~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l 131 (521)
T PRK14018 52 YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL 131 (521)
T ss_pred eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence 34578999999999999999999999999999986 346665543 3456678
Q ss_pred HHHcCCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHH
Q 030165 141 ATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDK 179 (182)
Q Consensus 141 ~~~~~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~ 179 (182)
++.|+|+++||++++ ++|+++.++.|.++.++|.++|+.
T Consensus 132 ak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 132 AQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 999999999999766 799999999999999999999983
No 75
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.61 E-value=6.6e-15 Score=112.82 Aligned_cols=88 Identities=24% Similarity=0.496 Sum_probs=73.0
Q ss_pred cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC-----------------------CChHHHHHcCCCc
Q 030165 92 SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD-----------------------DSPNIATKYGIRS 148 (182)
Q Consensus 92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d-----------------------~~~~l~~~~~I~~ 148 (182)
..+++++|+||++||++|+.+.|.++++.++ ++.++.|+.+ ....+++.|++.+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 3579999999999999999999999988754 3666666643 3335677899999
Q ss_pred ccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165 149 IPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE 182 (182)
Q Consensus 149 iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~ 182 (182)
+|+.+++ +||+++.++.|.++.++++++|+++++
T Consensus 138 ~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 138 APETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 9966666 799999999999999999999999874
No 76
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=8.5e-16 Score=133.24 Aligned_cols=102 Identities=32% Similarity=0.638 Sum_probs=89.2
Q ss_pred CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165 76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTDDSPNIATKYGIRSIPTVL 153 (182)
Q Consensus 76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~--~v~~~~vd~d~~~~l~~~~~I~~iPTl~ 153 (182)
.++..+.+++|++++.++++.|||.|||||||||++++|+++++++.|++ ++.++++|.+.|.-- ...|+++|||+
T Consensus 366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~--~~~~~~fPTI~ 443 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVP--SLKVDGFPTIL 443 (493)
T ss_pred CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCc--cccccccceEE
Confidence 56899999999999999999999999999999999999999999999986 488999998876542 35777899999
Q ss_pred EEECCe--EEEEEEcCCCHHHHHHHHHH
Q 030165 154 FFKNGE--KKESIIGAVPKSTLSSTLDK 179 (182)
Q Consensus 154 ~f~~G~--~v~~~~G~~~~~~l~~~l~~ 179 (182)
+|+.|. ....+.|..+.++|..+|++
T Consensus 444 ~~pag~k~~pv~y~g~R~le~~~~fi~~ 471 (493)
T KOG0190|consen 444 FFPAGHKSNPVIYNGDRTLEDLKKFIKK 471 (493)
T ss_pred EecCCCCCCCcccCCCcchHHHHhhhcc
Confidence 998665 45677899999999999875
No 77
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.60 E-value=1.5e-14 Score=118.35 Aligned_cols=87 Identities=17% Similarity=0.338 Sum_probs=73.5
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC-----------ChHHHHHcCCCcccEEEEEEC-CeE
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD-----------SPNIATKYGIRSIPTVLFFKN-GEK 160 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~-----------~~~l~~~~~I~~iPTl~~f~~-G~~ 160 (182)
.++++||+||++||++|+.+.|.|++++++|. +.++.|++|. +..++++|||+++||++++++ |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 57899999999999999999999999999986 5666677664 357899999999999999975 666
Q ss_pred EEE-EEcCCCHHHHHHHHHHHh
Q 030165 161 KES-IIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 161 v~~-~~G~~~~~~l~~~l~~~l 181 (182)
+.. ..|.++.++|.+.|..+.
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~a 264 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLAA 264 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHHh
Confidence 554 559999999999887653
No 78
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.59 E-value=9.2e-15 Score=106.05 Aligned_cols=79 Identities=24% Similarity=0.604 Sum_probs=66.5
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeC-----------------------CCChHHHHHcCCCcc
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT-----------------------DDSPNIATKYGIRSI 149 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~-----------------------d~~~~l~~~~~I~~i 149 (182)
.+++++|+||++||++|+.+.|.++++.+++. +.++.|+. |.+..++..|++.++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 47899999999999999999999999988863 66666653 455678889999999
Q ss_pred cEEEEE-ECCeEEEEEEcCCCHHHH
Q 030165 150 PTVLFF-KNGEKKESIIGAVPKSTL 173 (182)
Q Consensus 150 PTl~~f-~~G~~v~~~~G~~~~~~l 173 (182)
|+.+++ ++|+++.++.|.++++.|
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHhc
Confidence 966666 699999999999998765
No 79
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.59 E-value=5.2e-15 Score=120.30 Aligned_cols=99 Identities=32% Similarity=0.572 Sum_probs=89.1
Q ss_pred ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc-----CceEEEEEeCCCChHHHHHcCCCcccEEEEEE
Q 030165 82 TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA-----GKVACFKLNTDDSPNIATKYGIRSIPTVLFFK 156 (182)
Q Consensus 82 ~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~-----~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~ 156 (182)
+.++++. +..+...|+|.|||+||+..++++|+|++.++.+. +++.+.+||+|.+..++++|.|..+||+-+|.
T Consensus 2 t~~N~~~-il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 2 TSENIDS-ILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccccHHH-hhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 4566777 56778999999999999999999999999887663 57999999999999999999999999999999
Q ss_pred CCeEEE-EEEcCCCHHHHHHHHHHHh
Q 030165 157 NGEKKE-SIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 157 ~G~~v~-~~~G~~~~~~l~~~l~~~l 181 (182)
||..+. .+.|..+.+.|.++|++.+
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQL 106 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHh
Confidence 999887 7789999999999999876
No 80
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.57 E-value=5.6e-14 Score=106.81 Aligned_cols=102 Identities=26% Similarity=0.563 Sum_probs=83.9
Q ss_pred cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCC--------------------
Q 030165 78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDD-------------------- 136 (182)
Q Consensus 78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~-------------------- 136 (182)
+..++++.+.. ....+++++|+||++||++|+...+.+.++++++.+. +.++.++.|+
T Consensus 46 ~~~~~g~~~~l-~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~ 124 (173)
T PRK03147 46 LTDLEGKKIEL-KDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAI 124 (173)
T ss_pred eecCCCCEEeH-HHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEE
Confidence 44555555543 2235789999999999999999999999999999754 8888888753
Q ss_pred --ChHHHHHcCCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165 137 --SPNIATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKY 180 (182)
Q Consensus 137 --~~~l~~~~~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~ 180 (182)
+.++.+.|+|.++|+++++ ++|+.+..+.|..+.+++.++++++
T Consensus 125 d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 125 DKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 3567899999999998888 5899988999999999999998864
No 81
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.57 E-value=2.2e-14 Score=135.85 Aligned_cols=89 Identities=21% Similarity=0.435 Sum_probs=78.3
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeC---------------------------CCChHHHHHc
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNT---------------------------DDSPNIATKY 144 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~---------------------------d~~~~l~~~~ 144 (182)
.+++|||+|||+||++|+++.|.|++++++|+++ +.++.|.. |.+..++++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 5899999999999999999999999999999765 77777742 2234578899
Q ss_pred CCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 145 GIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 145 ~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
+|.++||++++ ++|+++.++.|....+++.++|++++
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHH
Confidence 99999999999 69999999999999999999999876
No 82
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.4e-14 Score=123.79 Aligned_cols=105 Identities=34% Similarity=0.643 Sum_probs=93.8
Q ss_pred ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEE
Q 030165 77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK 156 (182)
Q Consensus 77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~ 156 (182)
....++...+.......+++++|+||+|||++|+.+.|.+++++..+.+.+.+..||++.+.+++++|+|.++||+.+|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~ 109 (383)
T KOG0191|consen 30 VVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFR 109 (383)
T ss_pred chhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEc
Confidence 34445566777778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 157 NGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 157 ~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
.|.....+.|..+.+.+.+++.+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (383)
T KOG0191|consen 110 PGKKPIDYSGPRNAESLAEFLIKEL 134 (383)
T ss_pred CCCceeeccCcccHHHHHHHHHHhh
Confidence 8866777778889999999888765
No 83
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.56 E-value=2.9e-14 Score=106.56 Aligned_cols=71 Identities=20% Similarity=0.440 Sum_probs=59.9
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--------ceEEEEEeCCCCh-------------------------H
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--------KVACFKLNTDDSP-------------------------N 139 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~--------~v~~~~vd~d~~~-------------------------~ 139 (182)
.+++++|+|||+||++|+.+.|.|.++++++.+ ++.++.|+.|++. .
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 579999999999999999999999998876653 4888888876532 3
Q ss_pred HHHHcCCCcccEEEEEE-CCeEEEE
Q 030165 140 IATKYGIRSIPTVLFFK-NGEKKES 163 (182)
Q Consensus 140 l~~~~~I~~iPTl~~f~-~G~~v~~ 163 (182)
++.+|+|.++||++++. +|+++.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 67789999999999995 8888765
No 84
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.55 E-value=3e-14 Score=103.96 Aligned_cols=72 Identities=24% Similarity=0.505 Sum_probs=60.9
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCCCC------------------------hHHHHHcC
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTDDS------------------------PNIATKYG 145 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d~~------------------------~~l~~~~~ 145 (182)
.++++||+||++||++|+.+.|.+.++.+++.+ ++.++.++.|.. ..++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 578999999999999999999999999988863 477888877654 35778899
Q ss_pred CCcccEEEEEE-CCeEEEEE
Q 030165 146 IRSIPTVLFFK-NGEKKESI 164 (182)
Q Consensus 146 I~~iPTl~~f~-~G~~v~~~ 164 (182)
|.++|++++++ +|+++.+.
T Consensus 97 v~~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 97 IEGIPTLIILDADGEVVTTD 116 (131)
T ss_pred CCCCCEEEEECCCCCEEccc
Confidence 99999999995 88877654
No 85
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.54 E-value=8.4e-15 Score=119.23 Aligned_cols=98 Identities=27% Similarity=0.581 Sum_probs=80.8
Q ss_pred cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165 78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTDDSPNIATKYGIRSIPTVLF 154 (182)
Q Consensus 78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d~~~~l~~~~~I~~iPTl~~ 154 (182)
+..++++ |.+ .+.+..++|+||||||++|+++.|++.++.-++.+ .+++.++|+..-+.++.+|||+++||+.+
T Consensus 30 VeDLddk-Fkd--nkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~ 106 (468)
T KOG4277|consen 30 VEDLDDK-FKD--NKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKF 106 (468)
T ss_pred hhhhhHH-hhh--cccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEE
Confidence 4444443 333 35678899999999999999999999999876653 48999999999999999999999999999
Q ss_pred EECCeEEEEEEcCCCHHHHHHHHHH
Q 030165 155 FKNGEKKESIIGAVPKSTLSSTLDK 179 (182)
Q Consensus 155 f~~G~~v~~~~G~~~~~~l~~~l~~ 179 (182)
|++|..+ .+.|...++.+.++..+
T Consensus 107 ~kgd~a~-dYRG~R~Kd~iieFAhR 130 (468)
T KOG4277|consen 107 FKGDHAI-DYRGGREKDAIIEFAHR 130 (468)
T ss_pred ecCCeee-ecCCCccHHHHHHHHHh
Confidence 9988655 45577889999888664
No 86
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.54 E-value=5.5e-14 Score=96.85 Aligned_cols=66 Identities=38% Similarity=0.873 Sum_probs=56.3
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCCCCh-------------------------HHHHHcCC
Q 030165 94 ENPVLVEFWAPWCGPCRMIAPAIEELAKEYA--GKVACFKLNTDDSP-------------------------NIATKYGI 146 (182)
Q Consensus 94 ~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~--~~v~~~~vd~d~~~-------------------------~l~~~~~I 146 (182)
+++++|+||++||++|+...|.++++.++|+ +++.++.|+.|+.. .+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5899999999999999999999999999999 77999999987653 37788999
Q ss_pred CcccEEEEEE-CCe
Q 030165 147 RSIPTVLFFK-NGE 159 (182)
Q Consensus 147 ~~iPTl~~f~-~G~ 159 (182)
.++|+++++. +|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 9999999995 665
No 87
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.51 E-value=2e-13 Score=98.24 Aligned_cols=95 Identities=26% Similarity=0.548 Sum_probs=71.9
Q ss_pred EEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEe---------------------CCCC
Q 030165 79 QVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLN---------------------TDDS 137 (182)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd---------------------~d~~ 137 (182)
..++++.+... ...+++++|+||++||++|+.+.|.+.++++++. +..+.+| .|.+
T Consensus 6 ~~~~g~~~~~~-~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (123)
T cd03011 6 TTLDGEQFDLE-SLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPD 82 (123)
T ss_pred ecCCCCEeeHH-HhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCC
Confidence 34555555542 3346899999999999999999999999987742 2222222 1345
Q ss_pred hHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHH
Q 030165 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSST 176 (182)
Q Consensus 138 ~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~ 176 (182)
.+++++|+|.++|+++++++|++..+..|..++++|.+.
T Consensus 83 ~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 83 GVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred cHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 679999999999999999755588899999999998764
No 88
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.51 E-value=1.1e-13 Score=101.46 Aligned_cols=72 Identities=24% Similarity=0.513 Sum_probs=60.3
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCCCCh-------------------------HHHHHc
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTDDSP-------------------------NIATKY 144 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d~~~-------------------------~l~~~~ 144 (182)
.+++++|+||++||++|+...|.++++++++.+ ++.++.++.|... .+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 479999999999999999999999999988875 4778888877542 456779
Q ss_pred CCCcccEEEEEE-CCeEEEEE
Q 030165 145 GIRSIPTVLFFK-NGEKKESI 164 (182)
Q Consensus 145 ~I~~iPTl~~f~-~G~~v~~~ 164 (182)
+|.++||+++++ +|+++.+.
T Consensus 96 ~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred CCCCCCEEEEECCCCCEEchh
Confidence 999999999995 78776554
No 89
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.50 E-value=1.3e-13 Score=89.29 Aligned_cols=61 Identities=23% Similarity=0.495 Sum_probs=54.5
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeE
Q 030165 97 VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK 160 (182)
Q Consensus 97 vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~ 160 (182)
-++.||++||++|+.+.+.++++++.++ ++.+..+|.+++++++++|||.++||+++ +|+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~ 62 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKV 62 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEE
Confidence 3778999999999999999999987654 59999999999999999999999999866 6754
No 90
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.50 E-value=3.1e-13 Score=92.93 Aligned_cols=78 Identities=17% Similarity=0.269 Sum_probs=65.9
Q ss_pred cCCCc-EEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCH
Q 030165 92 SSENP-VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPK 170 (182)
Q Consensus 92 ~~~~~-vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~ 170 (182)
.-++| -+..|+++||++|....+.++++++.++ ++.+..+|.++.++++++|||.++||+++ ||+.+. .|..+.
T Consensus 9 ~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~--~G~~~~ 83 (89)
T cd03026 9 RLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFG--FGRMTL 83 (89)
T ss_pred hcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEE--eCCCCH
Confidence 33455 5888999999999999999999998886 59999999999999999999999999975 898766 476665
Q ss_pred HHHH
Q 030165 171 STLS 174 (182)
Q Consensus 171 ~~l~ 174 (182)
+++.
T Consensus 84 ~e~~ 87 (89)
T cd03026 84 EEIL 87 (89)
T ss_pred HHHh
Confidence 5543
No 91
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.50 E-value=3.2e-13 Score=104.00 Aligned_cols=83 Identities=20% Similarity=0.388 Sum_probs=69.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC-------------hHHHHHcCC--CcccEEEEE-ECCeEE
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS-------------PNIATKYGI--RSIPTVLFF-KNGEKK 161 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~-------------~~l~~~~~I--~~iPTl~~f-~~G~~v 161 (182)
+|.||++||++|+++.|.+++++++|+ +.++.|+.|+. ..+.+.|++ .++||.+++ ++|+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 778999999999999999999999985 67777776533 236678995 699998888 689886
Q ss_pred -EEEEcCCCHHHHHHHHHHHhC
Q 030165 162 -ESIIGAVPKSTLSSTLDKYVE 182 (182)
Q Consensus 162 -~~~~G~~~~~~l~~~l~~~l~ 182 (182)
..+.|.++.+++.+.|+++++
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHHh
Confidence 579999999999999998863
No 92
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.50 E-value=4.8e-13 Score=95.66 Aligned_cols=94 Identities=14% Similarity=0.174 Sum_probs=80.7
Q ss_pred HHHHcCCCcEEEEEEcCCChhhhhhhHH-H--HHHHHHhcCceEEEEEeCC--CChHHHHHcCCCcccEEEEEE--CCeE
Q 030165 88 NLVISSENPVLVEFWAPWCGPCRMIAPA-I--EELAKEYAGKVACFKLNTD--DSPNIATKYGIRSIPTVLFFK--NGEK 160 (182)
Q Consensus 88 ~~~~~~~~~vlV~F~a~wC~~C~~~~p~-l--~~~a~~~~~~v~~~~vd~d--~~~~l~~~~~I~~iPTl~~f~--~G~~ 160 (182)
+.+.+++++++|+|+++||.+|+.|... | +++.+.+..+..++++|.+ +..+++..|++.++|+++++. +|+.
T Consensus 11 ~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~ 90 (114)
T cd02958 11 QEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEV 90 (114)
T ss_pred HHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcE
Confidence 3355689999999999999999999874 4 5677777777888888887 456789999999999999994 7999
Q ss_pred EEEEEcCCCHHHHHHHHHHHh
Q 030165 161 KESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 161 v~~~~G~~~~~~l~~~l~~~l 181 (182)
+.+..|..++++|...|++.+
T Consensus 91 l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 91 LKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred eEEEcCCCCHHHHHHHHHHHH
Confidence 999999999999999998875
No 93
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=3.5e-14 Score=123.62 Aligned_cols=107 Identities=21% Similarity=0.495 Sum_probs=86.4
Q ss_pred cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCC--CChHHHHHcCCCcc
Q 030165 75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTD--DSPNIATKYGIRSI 149 (182)
Q Consensus 75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d--~~~~l~~~~~I~~i 149 (182)
.+.+..++.++|...+..+.+..+|+||++|||+|+.++|.|+++++++.+ -++++.||+- +|..+|++|+|+++
T Consensus 38 ~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~ 117 (606)
T KOG1731|consen 38 DDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGY 117 (606)
T ss_pred CCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCC
Confidence 478999999999998878888999999999999999999999999988754 4888899984 57789999999999
Q ss_pred cEEEEEECCeEE----EEEEcCCCHHHHHHHHHHHh
Q 030165 150 PTVLFFKNGEKK----ESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 150 PTl~~f~~G~~v----~~~~G~~~~~~l~~~l~~~l 181 (182)
||+.+|+.+-.. ..+.|...+.++.+.+.+.|
T Consensus 118 Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l 153 (606)
T KOG1731|consen 118 PTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTL 153 (606)
T ss_pred ceeeecCCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence 999999533222 34445555666666665544
No 94
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.45 E-value=6.1e-13 Score=92.79 Aligned_cols=74 Identities=41% Similarity=0.873 Sum_probs=66.2
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCCCC-----------------------hHHHHHcCCCc
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYA-GKVACFKLNTDDS-----------------------PNIATKYGIRS 148 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~-~~v~~~~vd~d~~-----------------------~~l~~~~~I~~ 148 (182)
.+++++|+||++||++|+...+.+.++.+++. .++.++.++.|.. .++.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 37899999999999999999999999999986 4599999999986 77899999999
Q ss_pred ccEEEEE-ECCeEEEEEEc
Q 030165 149 IPTVLFF-KNGEKKESIIG 166 (182)
Q Consensus 149 iPTl~~f-~~G~~v~~~~G 166 (182)
+|+++++ ++|+.+.++.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 9999999 48988887765
No 95
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=5.5e-13 Score=114.04 Aligned_cols=105 Identities=31% Similarity=0.523 Sum_probs=96.5
Q ss_pred ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165 77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA--GKVACFKLNTDDSPNIATKYGIRSIPTVLF 154 (182)
Q Consensus 77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~--~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~ 154 (182)
.+.+++..+|...+...+..++|.||+|||++|+.+.|.+++++..+. ..+.+..+|++....++++++|+++||+.+
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKL 224 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEE
Confidence 388999999999888999999999999999999999999999999885 568999999998899999999999999999
Q ss_pred EECCeE-EEEEEcCCCHHHHHHHHHHHh
Q 030165 155 FKNGEK-KESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 155 f~~G~~-v~~~~G~~~~~~l~~~l~~~l 181 (182)
|++|.. .....|..+.+.+..|+++..
T Consensus 225 f~~~~~~~~~~~~~R~~~~i~~~v~~~~ 252 (383)
T KOG0191|consen 225 FPPGEEDIYYYSGLRDSDSIVSFVEKKE 252 (383)
T ss_pred ecCCCcccccccccccHHHHHHHHHhhc
Confidence 998888 778888899999999998754
No 96
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.41 E-value=1.3e-12 Score=92.66 Aligned_cols=70 Identities=20% Similarity=0.450 Sum_probs=54.9
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC--------------------ChHHHHHcCCCcccEE
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD--------------------SPNIATKYGIRSIPTV 152 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~--------------------~~~l~~~~~I~~iPTl 152 (182)
.+++++|+||++||++|+.+.|.++++++++.+++.++.+..++ ..++.++|++.++|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 47899999999999999999999999999887777777663111 1135667888899998
Q ss_pred EEEE-CCeEEE
Q 030165 153 LFFK-NGEKKE 162 (182)
Q Consensus 153 ~~f~-~G~~v~ 162 (182)
++++ +|+.+.
T Consensus 100 ~vid~~G~v~~ 110 (114)
T cd02967 100 VLLDEAGVIAA 110 (114)
T ss_pred EEECCCCeEEe
Confidence 8885 776654
No 97
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.40 E-value=1.7e-12 Score=101.87 Aligned_cols=90 Identities=13% Similarity=0.192 Sum_probs=70.2
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC-------C----hHHHHHcCC--------------
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD-------S----PNIATKYGI-------------- 146 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~-------~----~~l~~~~~I-------------- 146 (182)
.++++||.|||+||++|+...|.|.++.++|.+ .+.++.|++++ . ...++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 578999999999999999999999999999975 38899997631 2 223444443
Q ss_pred ----------------------Cccc----EEEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165 147 ----------------------RSIP----TVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182 (182)
Q Consensus 147 ----------------------~~iP----Tl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~ 182 (182)
.++| |+++-++|+++.++.|..+.+++.+.|+++|+
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 1223 34444899999999999999999999998873
No 98
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.40 E-value=2.8e-12 Score=95.02 Aligned_cols=94 Identities=32% Similarity=0.636 Sum_probs=73.7
Q ss_pred cChhhHHHHHHcCCCcEEEEEEcC-CChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCCC---------------------
Q 030165 81 VTDSSWENLVISSENPVLVEFWAP-WCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDS--------------------- 137 (182)
Q Consensus 81 l~~~~~~~~~~~~~~~vlV~F~a~-wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~~--------------------- 137 (182)
.++..+.- ....+++++|+||+. ||++|+...|.+.++.+.|..+ +.++.|..+.+
T Consensus 16 ~~g~~~~l-~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~ 94 (146)
T PF08534_consen 16 LDGKPVSL-SDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPD 94 (146)
T ss_dssp TTSEEEEG-GGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETT
T ss_pred CCCCEecH-HHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechH
Confidence 44444443 224689999999999 9999999999999999987654 88888876544
Q ss_pred hHHHHHcCCC---------cccEEEEE-ECCeEEEEEEcCCC--HHHHHH
Q 030165 138 PNIATKYGIR---------SIPTVLFF-KNGEKKESIIGAVP--KSTLSS 175 (182)
Q Consensus 138 ~~l~~~~~I~---------~iPTl~~f-~~G~~v~~~~G~~~--~~~l~~ 175 (182)
..+.++|++. ++|+++++ ++|+++....|..+ .+++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~~~~~~~~ 144 (146)
T PF08534_consen 95 GALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDPDEESDLEA 144 (146)
T ss_dssp SHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBTTSHHSHHH
T ss_pred HHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCCCCCCChhh
Confidence 3578889998 99988777 69999999999877 344443
No 99
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.40 E-value=2.7e-12 Score=103.00 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=77.3
Q ss_pred cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCC-------C-h---HHH-HHc
Q 030165 78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDD-------S-P---NIA-TKY 144 (182)
Q Consensus 78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~-------~-~---~l~-~~~ 144 (182)
+..++++.+.. ..-.++++||.||++||++|+...|.|.+++++|.++ +.++.|++++ . . +.+ +++
T Consensus 84 l~d~~G~~vsL-sd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~ 162 (236)
T PLN02399 84 VKDIDGKDVAL-SKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRF 162 (236)
T ss_pred EECCCCCEEeH-HHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhc
Confidence 34455544432 2225789999999999999999999999999999754 8888888641 1 1 222 232
Q ss_pred C----------------------------------CCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165 145 G----------------------------------IRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE 182 (182)
Q Consensus 145 ~----------------------------------I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~ 182 (182)
+ |+..|+.+++ ++|+++.++.|..+++++++.|+++|+
T Consensus 163 g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 163 KAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred CCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 2 1234777777 799999999999999999999999884
No 100
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.37 E-value=4.6e-12 Score=91.93 Aligned_cols=75 Identities=19% Similarity=0.443 Sum_probs=63.1
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCC---------------------------CChHHHHHc
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTD---------------------------DSPNIATKY 144 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d---------------------------~~~~l~~~~ 144 (182)
.++++||+||+.||++|+...|.|+++++++.+ .+.++.|+.+ ....+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 578999999999999999999999999999974 4788877542 222467779
Q ss_pred CCCcccEEEEE-ECCeEEEEEEcC
Q 030165 145 GIRSIPTVLFF-KNGEKKESIIGA 167 (182)
Q Consensus 145 ~I~~iPTl~~f-~~G~~v~~~~G~ 167 (182)
++.++|+++++ ++|+++..+.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 99999999999 589999998885
No 101
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.32 E-value=9.7e-12 Score=85.91 Aligned_cols=87 Identities=48% Similarity=1.058 Sum_probs=75.6
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC-CChHHHHHcC--CCcccEEEEEECCeEEEEEEc--CC
Q 030165 94 ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD-DSPNIATKYG--IRSIPTVLFFKNGEKKESIIG--AV 168 (182)
Q Consensus 94 ~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d-~~~~l~~~~~--I~~iPTl~~f~~G~~v~~~~G--~~ 168 (182)
++++++.||++||++|+.+.|.+.++++++...+.++.+|.. ...++...|+ +..+|+++++.+|+.+....+ ..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 789999999999999999999999999999877999999997 8899999999 999999999999987777766 56
Q ss_pred CHHHHHHHHHHH
Q 030165 169 PKSTLSSTLDKY 180 (182)
Q Consensus 169 ~~~~l~~~l~~~ 180 (182)
+...+......+
T Consensus 112 ~~~~~~~~~~~~ 123 (127)
T COG0526 112 PKEALIDALGEL 123 (127)
T ss_pred CHHHHHHHhcch
Confidence 666666555443
No 102
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.30 E-value=1.6e-11 Score=94.98 Aligned_cols=82 Identities=18% Similarity=0.201 Sum_probs=65.0
Q ss_pred cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEE------EEEeCCCC----------------------------
Q 030165 92 SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVAC------FKLNTDDS---------------------------- 137 (182)
Q Consensus 92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~------~~vd~d~~---------------------------- 137 (182)
-.+|+.||.|||.||++|++.+|.++++.++ ++.+ +.||.|+.
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 3599999999999999999999999999643 2445 56666542
Q ss_pred -hHHHHHcCCCcccEE-EEE-ECCeEEEEEEcCCCHHHHHHH
Q 030165 138 -PNIATKYGIRSIPTV-LFF-KNGEKKESIIGAVPKSTLSST 176 (182)
Q Consensus 138 -~~l~~~~~I~~iPTl-~~f-~~G~~v~~~~G~~~~~~l~~~ 176 (182)
..+...||+.++|+. +++ ++|+++.++.|.++.+++.+.
T Consensus 134 ~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~ 175 (184)
T TIGR01626 134 KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTV 175 (184)
T ss_pred cchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHH
Confidence 235678999999865 455 799999999999998877663
No 103
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.30 E-value=1.1e-11 Score=90.78 Aligned_cols=80 Identities=16% Similarity=0.252 Sum_probs=58.2
Q ss_pred HHHHcCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE-ECCeEEEE
Q 030165 88 NLVISSENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF-KNGEKKES 163 (182)
Q Consensus 88 ~~~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f-~~G~~v~~ 163 (182)
+.+.+++|+++|+|+++||++|+++...+ .++.+....++..+.++.|....-....+ .++||++|+ .+|+++.+
T Consensus 17 ~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~~ 95 (130)
T cd02960 17 YKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRAD 95 (130)
T ss_pred HHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCccc
Confidence 44567899999999999999999999865 45566565556666777653211111234 689999999 59999998
Q ss_pred EEcCC
Q 030165 164 IIGAV 168 (182)
Q Consensus 164 ~~G~~ 168 (182)
+.|..
T Consensus 96 i~Gy~ 100 (130)
T cd02960 96 ITGRY 100 (130)
T ss_pred ccccc
Confidence 88865
No 104
>smart00594 UAS UAS domain.
Probab=99.29 E-value=4.5e-11 Score=86.65 Aligned_cols=93 Identities=11% Similarity=0.154 Sum_probs=74.4
Q ss_pred hHHHHHHcCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCC--ChHHHHHcCCCcccEEEEEE-CC
Q 030165 85 SWENLVISSENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDD--SPNIATKYGIRSIPTVLFFK-NG 158 (182)
Q Consensus 85 ~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~--~~~l~~~~~I~~iPTl~~f~-~G 158 (182)
+-.+.+.+.+|+++|+|+++||++|+.+...+ .++.+.+..++.++.+|.+. ..+++++|+++++|+++++. +|
T Consensus 18 ~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 18 AAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred HHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCC
Confidence 33343556789999999999999999998754 56667777678887888764 45689999999999999994 55
Q ss_pred -----eEEEEEEcCCCHHHHHHHH
Q 030165 159 -----EKKESIIGAVPKSTLSSTL 177 (182)
Q Consensus 159 -----~~v~~~~G~~~~~~l~~~l 177 (182)
+.+.++.|..++++|...|
T Consensus 98 g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 98 GQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CceeEEEeccccCCCCHHHHHHhh
Confidence 3567888999999998876
No 105
>PLN02412 probable glutathione peroxidase
Probab=99.29 E-value=3.1e-11 Score=92.09 Aligned_cols=90 Identities=14% Similarity=0.214 Sum_probs=72.0
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCC-------C-hHH----HHHcC--------------
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDD-------S-PNI----ATKYG-------------- 145 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~-------~-~~l----~~~~~-------------- 145 (182)
.++++||.||++||++|+...|.|.++.++|.++ +.++.|+.+. . .++ .++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 4689999999999999999999999999999854 8889888642 1 121 12211
Q ss_pred --------------------CCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165 146 --------------------IRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE 182 (182)
Q Consensus 146 --------------------I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~ 182 (182)
|...|+.+++ ++|+.+.++.|..+.+++.+.|+++|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 3345887777 799999999999999999999999874
No 106
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.28 E-value=2.7e-11 Score=94.19 Aligned_cols=84 Identities=23% Similarity=0.428 Sum_probs=63.0
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC--------------------CChHHHHHcCCCcccEE
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD--------------------DSPNIATKYGIRSIPTV 152 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d--------------------~~~~l~~~~~I~~iPTl 152 (182)
.+++++|+||++||++|+.+.|.+.++.+++.. .++.++.+ ...++.+.|++.++|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~--~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEET--DVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCC--cEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 578999999999999999999999999877643 34444321 13467788999999987
Q ss_pred EEE-ECCeEEEEEEcC-CCHHHHHHHHHHH
Q 030165 153 LFF-KNGEKKESIIGA-VPKSTLSSTLDKY 180 (182)
Q Consensus 153 ~~f-~~G~~v~~~~G~-~~~~~l~~~l~~~ 180 (182)
+++ ++|+...+ |. ...++++++++.+
T Consensus 151 ~lID~~G~I~~~--g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 151 VLLDQDGKIRAK--GLTNTREHLESLLEAD 178 (189)
T ss_pred EEECCCCeEEEc--cCCCCHHHHHHHHHHH
Confidence 777 58877664 43 4567777777643
No 107
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.27 E-value=1.3e-11 Score=108.51 Aligned_cols=102 Identities=19% Similarity=0.469 Sum_probs=80.9
Q ss_pred EEcChh-hHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCCCh----HHHHHcCCCcc
Q 030165 79 QVVTDS-SWENLVIS-SENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDDSP----NIATKYGIRSI 149 (182)
Q Consensus 79 ~~l~~~-~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~~~----~l~~~~~I~~i 149 (182)
+.++.. +.++...+ .+|||+|||||+||-.||.+++.. .+...+.. ++...+.|.+++. ++.++||+-++
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 344444 67764433 345999999999999999999874 23444444 4889999987654 47899999999
Q ss_pred cEEEEEE-CCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 150 PTVLFFK-NGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 150 PTl~~f~-~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
|++++|. +|++.....|.++++.+.+++++..
T Consensus 536 P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 536 PTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 9999996 8988888999999999999998853
No 108
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.26 E-value=9.1e-11 Score=89.42 Aligned_cols=90 Identities=27% Similarity=0.448 Sum_probs=72.5
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCCCC-------h----------------------HHHH
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYA-GKVACFKLNTDDS-------P----------------------NIAT 142 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~-~~v~~~~vd~d~~-------~----------------------~l~~ 142 (182)
.++++||+||++||+.|....+.+.++.+++. .++.++.++.|.. . .+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 57899999999999999999999999999997 4699999987642 1 3567
Q ss_pred HcCCCcccEEEEE-ECCeEEEEEE---------cCCCHHHHHHHHHHHhC
Q 030165 143 KYGIRSIPTVLFF-KNGEKKESII---------GAVPKSTLSSTLDKYVE 182 (182)
Q Consensus 143 ~~~I~~iPTl~~f-~~G~~v~~~~---------G~~~~~~l~~~l~~~l~ 182 (182)
.|+|..+|+++++ ++|+++.... +..+.+++.+.|+.+|.
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLA 153 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHc
Confidence 8999999999999 4888775531 22456889999988763
No 109
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.26 E-value=5.1e-11 Score=89.36 Aligned_cols=89 Identities=21% Similarity=0.273 Sum_probs=69.5
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeC--------CCCh---HHHHH-cCC-------------
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNT--------DDSP---NIATK-YGI------------- 146 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~--------d~~~---~l~~~-~~I------------- 146 (182)
.++++||.||++||++|+...|.+.++.++|.+ .+.++.++. +... +.+++ +++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 578899999999999999999999999999975 588888884 1111 22322 221
Q ss_pred -------------CcccE-----EEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 147 -------------RSIPT-----VLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 147 -------------~~iPT-----l~~f~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
.++|+ +++-++|+.+.++.|..+.+++.+.|+++|
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 13784 555589999999999999999999998875
No 110
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.20 E-value=5.6e-11 Score=80.14 Aligned_cols=67 Identities=27% Similarity=0.526 Sum_probs=54.1
Q ss_pred HHHcCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEE
Q 030165 89 LVISSENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK 156 (182)
Q Consensus 89 ~~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~ 156 (182)
.+.+++++++|+|+++||++|+.+...+ .++.+.+.+++.++.+|.++.......++ .++|+++++.
T Consensus 12 ~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 12 EAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 3567899999999999999999999887 56666566779999999987665443222 7799999985
No 111
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.15 E-value=1.3e-10 Score=87.14 Aligned_cols=83 Identities=18% Similarity=0.309 Sum_probs=63.4
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC-------C----hHHHHH-cC--------------
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD-------S----PNIATK-YG-------------- 145 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~-------~----~~l~~~-~~-------------- 145 (182)
.+++|||.||++||+ |+...|.|++++++|.+ .+.++.|+.+. . .+.+++ ++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 478999999999999 99999999999999974 58888887542 1 123332 22
Q ss_pred ---------CCccc-----------EEEEE-ECCeEEEEEEcCCCHHHHHHH
Q 030165 146 ---------IRSIP-----------TVLFF-KNGEKKESIIGAVPKSTLSST 176 (182)
Q Consensus 146 ---------I~~iP-----------Tl~~f-~~G~~v~~~~G~~~~~~l~~~ 176 (182)
+.++| |.+++ ++|+++.++.|..+.+++++.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 23466 45555 799999999999998887654
No 112
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.14 E-value=2.2e-10 Score=85.77 Aligned_cols=72 Identities=24% Similarity=0.549 Sum_probs=61.5
Q ss_pred cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc---eEEEEEeCCCCh-------------------------HHHHH
Q 030165 92 SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK---VACFKLNTDDSP-------------------------NIATK 143 (182)
Q Consensus 92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~---v~~~~vd~d~~~-------------------------~l~~~ 143 (182)
-.++.|.++|-|.||++||.|.|++.++.++.... +.++.|+.|.+. ++..+
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~k 110 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEK 110 (157)
T ss_pred hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHh
Confidence 35799999999999999999999999999988776 888888887554 37788
Q ss_pred cCCCcccEEEEEE-CCeEEEE
Q 030165 144 YGIRSIPTVLFFK-NGEKKES 163 (182)
Q Consensus 144 ~~I~~iPTl~~f~-~G~~v~~ 163 (182)
|+|.++|++++.+ +|..+..
T Consensus 111 y~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 111 YEVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred cccCcCceeEEecCCCCEehH
Confidence 9999999999996 8877653
No 113
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.13 E-value=6.2e-10 Score=86.08 Aligned_cols=90 Identities=19% Similarity=0.236 Sum_probs=68.2
Q ss_pred CCCcE-EEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC-------C-hH---H-HHH---------------
Q 030165 93 SENPV-LVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD-------S-PN---I-ATK--------------- 143 (182)
Q Consensus 93 ~~~~v-lV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~-------~-~~---l-~~~--------------- 143 (182)
.++++ |+.|||+||++|+...|.|+++.++|.+ .+.++.++++. . .+ . .++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 46654 5667999999999999999999999975 48888887531 0 11 1 112
Q ss_pred ---------------------cCCCcccE----EEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165 144 ---------------------YGIRSIPT----VLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182 (182)
Q Consensus 144 ---------------------~~I~~iPT----l~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~ 182 (182)
+++.++|+ +++-++|+++.++.|..+.+++.+.|+++|+
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 13457894 5555799999999999999999999998874
No 114
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=9e-10 Score=82.03 Aligned_cols=89 Identities=21% Similarity=0.435 Sum_probs=76.8
Q ss_pred HHcCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCC----------------ChHHHHHcCCCccc
Q 030165 90 VISSENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDD----------------SPNIATKYGIRSIP 150 (182)
Q Consensus 90 ~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~----------------~~~l~~~~~I~~iP 150 (182)
+...++..++.|-.+.|.+|..+...+ +++.+.+.+++.++.+++.. ..+|++.|+|+++|
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstP 117 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTP 117 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCc
Confidence 556899999999999999999999886 56777777888899888742 23799999999999
Q ss_pred EEEEEE-CCeEEEEEEcCCCHHHHHHHHH
Q 030165 151 TVLFFK-NGEKKESIIGAVPKSTLSSTLD 178 (182)
Q Consensus 151 Tl~~f~-~G~~v~~~~G~~~~~~l~~~l~ 178 (182)
|+++|+ +|+.+....|.++++++...++
T Consensus 118 tfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 118 TFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred eEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 999994 8999999999999999987765
No 115
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.11 E-value=5.8e-10 Score=72.32 Aligned_cols=69 Identities=19% Similarity=0.490 Sum_probs=54.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH----HHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHH
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN----IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTL 173 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~----l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l 173 (182)
+..||++||++|+...+.|++. ++.+..+|++++++ +.+++++.++|++++. |+. +.| .+++.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g-~~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVG-FDPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---Eee-CCHHHH
Confidence 5689999999999999888762 48888999987765 4567999999999874 643 666 577888
Q ss_pred HHHHH
Q 030165 174 SSTLD 178 (182)
Q Consensus 174 ~~~l~ 178 (182)
.++|+
T Consensus 70 ~~~i~ 74 (74)
T TIGR02196 70 DQLLE 74 (74)
T ss_pred HHHhC
Confidence 88763
No 116
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.09 E-value=1.1e-09 Score=80.32 Aligned_cols=85 Identities=18% Similarity=0.314 Sum_probs=69.8
Q ss_pred CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC---------------------ChHHHHHcCCCcc
Q 030165 93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD---------------------SPNIATKYGIRSI 149 (182)
Q Consensus 93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~---------------------~~~l~~~~~I~~i 149 (182)
.+++++|+|| +.||+.|....+.+.++.+++.+ ++.++.|..|. ...+++.||+...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 3789999999 58999999999999999988864 47788776643 3357778999888
Q ss_pred ---------cEEEEEE-CCeEEEEEEcCCCHHHHHHHH
Q 030165 150 ---------PTVLFFK-NGEKKESIIGAVPKSTLSSTL 177 (182)
Q Consensus 150 ---------PTl~~f~-~G~~v~~~~G~~~~~~l~~~l 177 (182)
|+++++. +|+++..+.|..+.+.+.+.+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 8888885 899999999999888777655
No 117
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.07 E-value=8.3e-10 Score=90.10 Aligned_cols=103 Identities=21% Similarity=0.413 Sum_probs=78.1
Q ss_pred cCccEEcC-hhhHHHHHHcC--CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccE
Q 030165 75 VNEVQVVT-DSSWENLVISS--ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPT 151 (182)
Q Consensus 75 ~~~v~~l~-~~~~~~~~~~~--~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPT 151 (182)
-+.+.+++ +++|.+.+.+. +..|||+||.+.++.|..|...|..+|++|+. ++|++|..+..+ +..+|.+..+||
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~~-~~~~f~~~~LPt 201 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKCP-ASENFPDKNLPT 201 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGCC-TTTTS-TTC-SE
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhccC-cccCCcccCCCE
Confidence 46778885 47787755443 34699999999999999999999999999986 999999998776 788999999999
Q ss_pred EEEEECCeEEEEEEcCC-------CHHHHHHHHHH
Q 030165 152 VLFFKNGEKKESIIGAV-------PKSTLSSTLDK 179 (182)
Q Consensus 152 l~~f~~G~~v~~~~G~~-------~~~~l~~~l~~ 179 (182)
+++|++|..++.++|.. ..++|+.+|.+
T Consensus 202 llvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~ 236 (265)
T PF02114_consen 202 LLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIE 236 (265)
T ss_dssp EEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHT
T ss_pred EEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHH
Confidence 99999999999998743 34566666654
No 118
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.07 E-value=5e-10 Score=86.08 Aligned_cols=91 Identities=27% Similarity=0.491 Sum_probs=80.6
Q ss_pred CccEEcC-hhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165 76 NEVQVVT-DSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF 154 (182)
Q Consensus 76 ~~v~~l~-~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~ 154 (182)
+...++. ..+|-+.. ....-||++||-+.-..|+.|...|+.+++.+-+ .+|++||.+..+-++.+++|+.+|++++
T Consensus 66 G~y~ev~~Ekdf~~~~-~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PFlv~kL~IkVLP~v~l 143 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEV-KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPFLVTKLNIKVLPTVAL 143 (211)
T ss_pred ceEEEeccHHHHHHHh-hcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCceeeeeeeeeEeeeEEE
Confidence 4556665 67787744 4455789999999999999999999999999986 8999999999999999999999999999
Q ss_pred EECCeEEEEEEcCC
Q 030165 155 FKNGEKKESIIGAV 168 (182)
Q Consensus 155 f~~G~~v~~~~G~~ 168 (182)
|+||+.++++.|..
T Consensus 144 ~k~g~~~D~iVGF~ 157 (211)
T KOG1672|consen 144 FKNGKTVDYVVGFT 157 (211)
T ss_pred EEcCEEEEEEeeHh
Confidence 99999999999864
No 119
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=8.9e-10 Score=86.19 Aligned_cols=92 Identities=23% Similarity=0.452 Sum_probs=75.7
Q ss_pred cCccEEcChhhHHHHHHc--CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCC----
Q 030165 75 VNEVQVVTDSSWENLVIS--SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDSPNIATKYGIR---- 147 (182)
Q Consensus 75 ~~~v~~l~~~~~~~~~~~--~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~~~l~~~~~I~---- 147 (182)
++.+.-++..+......+ ....++|.|+|-|.+.|+.+.|.|.++..+|.. .++|.+||+..-++.+++|+|.
T Consensus 123 pe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~ 202 (265)
T KOG0914|consen 123 PETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPG 202 (265)
T ss_pred chheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcc
Confidence 456677744433333333 445689999999999999999999999999974 5999999999999999999985
Q ss_pred --cccEEEEEECCeEEEEEEc
Q 030165 148 --SIPTVLFFKNGEKKESIIG 166 (182)
Q Consensus 148 --~iPTl~~f~~G~~v~~~~G 166 (182)
..||+++|++|+++.|...
T Consensus 203 srQLPT~ilFq~gkE~~RrP~ 223 (265)
T KOG0914|consen 203 SRQLPTYILFQKGKEVSRRPD 223 (265)
T ss_pred cccCCeEEEEccchhhhcCcc
Confidence 6999999999999987653
No 120
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.95 E-value=1.3e-09 Score=71.73 Aligned_cols=70 Identities=20% Similarity=0.457 Sum_probs=51.5
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHc-----CCCcccEEEEEECCeEEEEEEcCCCHHH
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKY-----GIRSIPTVLFFKNGEKKESIIGAVPKST 172 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~-----~I~~iPTl~~f~~G~~v~~~~G~~~~~~ 172 (182)
++.||++||++|+++++.|++.. +.+..+|+++++...+.+ ++.++|++ ++.+|+.+. ..+..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~----~~~~~~ 70 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT----NPSAAQ 70 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec----CCCHHH
Confidence 67899999999999999987663 455678888877766663 89999997 577775433 345556
Q ss_pred HHHHHH
Q 030165 173 LSSTLD 178 (182)
Q Consensus 173 l~~~l~ 178 (182)
+.+.|+
T Consensus 71 ~~~~l~ 76 (77)
T TIGR02200 71 VKAKLQ 76 (77)
T ss_pred HHHHhh
Confidence 665553
No 121
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.95 E-value=5.3e-09 Score=64.32 Aligned_cols=60 Identities=33% Similarity=0.783 Sum_probs=52.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHH---HcCCCcccEEEEEECC
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIAT---KYGIRSIPTVLFFKNG 158 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~---~~~I~~iPTl~~f~~G 158 (182)
++.||+.||++|+.+.+.++++ +....++.+..++.+...+... .+++.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 5556679999999998887654 8999999999999877
No 122
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.95 E-value=1.1e-08 Score=67.98 Aligned_cols=73 Identities=26% Similarity=0.560 Sum_probs=57.6
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEc-CCCHHHHHHHH
Q 030165 99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG-AVPKSTLSSTL 177 (182)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G-~~~~~~l~~~l 177 (182)
|.++.++|++|..+...+++++..++ +.+-.+|.++.+++ .+|||.++|++++ ||+. ++.| ..+.++|.+||
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~--~~~G~~p~~~el~~~l 75 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKV--VFVGRVPSKEELKELL 75 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEE--EEESS--HHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEE--EEEecCCCHHHHHHHh
Confidence 34478889999999999999999984 66666677666666 9999999999966 8975 6778 67788999888
Q ss_pred H
Q 030165 178 D 178 (182)
Q Consensus 178 ~ 178 (182)
+
T Consensus 76 ~ 76 (76)
T PF13192_consen 76 E 76 (76)
T ss_dssp H
T ss_pred C
Confidence 5
No 123
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.92 E-value=1.5e-08 Score=75.78 Aligned_cols=87 Identities=17% Similarity=0.267 Sum_probs=66.5
Q ss_pred CCCcEEEEEEcC-CChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC---------------------ChHHHHHcCCCcc
Q 030165 93 SENPVLVEFWAP-WCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD---------------------SPNIATKYGIRSI 149 (182)
Q Consensus 93 ~~~~vlV~F~a~-wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~---------------------~~~l~~~~~I~~i 149 (182)
.++++||+||+. ||+.|....+.+.++.+++.+ ++.++.|+.|. ...+++.||+...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 578999999976 688899999999999988864 47888887643 2347778888654
Q ss_pred ------------cEEEEE-ECCeEEEEEEcCCCHHHHHHHHHH
Q 030165 150 ------------PTVLFF-KNGEKKESIIGAVPKSTLSSTLDK 179 (182)
Q Consensus 150 ------------PTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~ 179 (182)
|+.+++ ++|+++..+.|....+.+.+.++.
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~~ 151 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLDY 151 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHHH
Confidence 566666 699999999998777665554443
No 124
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.91 E-value=2.1e-08 Score=79.62 Aligned_cols=83 Identities=19% Similarity=0.400 Sum_probs=69.4
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC-----------CChHHHHHcCCCcccEEEEEE-CC-e
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD-----------DSPNIATKYGIRSIPTVLFFK-NG-E 159 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d-----------~~~~l~~~~~I~~iPTl~~f~-~G-~ 159 (182)
.++.-|++||.+.|++|+.+.|+++.++++|. +.++.|+.| .+..+++++||..+|+++++. ++ +
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 47788999999999999999999999999995 677777776 357899999999999999995 44 4
Q ss_pred EEEEEEcCCCHHHHHHHH
Q 030165 160 KKESIIGAVPKSTLSSTL 177 (182)
Q Consensus 160 ~v~~~~G~~~~~~l~~~l 177 (182)
...--.|.++.++|.+-|
T Consensus 197 ~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 197 WYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEEeeecCCHHHHHHhh
Confidence 444556999999988754
No 125
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.90 E-value=5.3e-09 Score=76.65 Aligned_cols=95 Identities=21% Similarity=0.443 Sum_probs=56.9
Q ss_pred cChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHc---CCCcccEEEEEE-
Q 030165 81 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKY---GIRSIPTVLFFK- 156 (182)
Q Consensus 81 l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~---~I~~iPTl~~f~- 156 (182)
++++....+.....+.-++.|..+|||.|+..-|.|.++++..+ ++.+-.+..|++.++.++| |.++|||++++.
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~ 106 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDK 106 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-T
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcC
Confidence 45555554333456668899999999999999999999999876 4777777778887776654 788999999995
Q ss_pred CCeEEEEEEcCCCHHHHHHHHH
Q 030165 157 NGEKKESIIGAVPKSTLSSTLD 178 (182)
Q Consensus 157 ~G~~v~~~~G~~~~~~l~~~l~ 178 (182)
+|+++.++.. .+ +.+.++++
T Consensus 107 ~~~~lg~wge-rP-~~~~~~~~ 126 (129)
T PF14595_consen 107 DGKELGRWGE-RP-KEVQELVD 126 (129)
T ss_dssp T--EEEEEES-S--HHHH----
T ss_pred CCCEeEEEcC-CC-HHHhhccc
Confidence 6787777743 33 33444443
No 126
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.88 E-value=3.3e-08 Score=75.58 Aligned_cols=88 Identities=15% Similarity=0.261 Sum_probs=67.9
Q ss_pred CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHH
Q 030165 93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD----------------------------SPNIAT 142 (182)
Q Consensus 93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~----------------------------~~~l~~ 142 (182)
.++++||+|| +.||++|....+.|.++++++.. ++.++.|..|. ...+++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 4689999999 89999999999999999999864 47777776543 224667
Q ss_pred HcCCC------cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHH
Q 030165 143 KYGIR------SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKY 180 (182)
Q Consensus 143 ~~~I~------~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~ 180 (182)
.||+. .+|+.+++ ++|+++..+.+.. +.+++.+.|+++
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 78886 57888888 5999988887654 466777777654
No 127
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.86 E-value=2e-08 Score=76.05 Aligned_cols=98 Identities=17% Similarity=0.376 Sum_probs=65.0
Q ss_pred cChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHH-H--HHHHHHhcCceEEEEEeCCCChHHHHHc--------CCCcc
Q 030165 81 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPA-I--EELAKEYAGKVACFKLNTDDSPNIATKY--------GIRSI 149 (182)
Q Consensus 81 l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~-l--~~~a~~~~~~v~~~~vd~d~~~~l~~~~--------~I~~i 149 (182)
.+++.++. +.+++|+++|+++.+||..|+.|... | .++++.++.++.-++||.++.+++...| |..++
T Consensus 25 w~~ea~~~-Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGw 103 (163)
T PF03190_consen 25 WGEEALEK-AKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGW 103 (163)
T ss_dssp SSHHHHHH-HHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---S
T ss_pred CCHHHHHH-HHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCC
Confidence 34555665 77889999999999999999999864 4 5688888878899999999999998888 88999
Q ss_pred cEEEEE-ECCeEEEEEEcCCCH------HHHHHHHHHH
Q 030165 150 PTVLFF-KNGEKKESIIGAVPK------STLSSTLDKY 180 (182)
Q Consensus 150 PTl~~f-~~G~~v~~~~G~~~~------~~l~~~l~~~ 180 (182)
|+.+|+ .+|+.+.. ....++ ..|.+.|+++
T Consensus 104 Pl~vfltPdg~p~~~-~tY~P~~~~~g~~~f~~~l~~i 140 (163)
T PF03190_consen 104 PLTVFLTPDGKPFFG-GTYFPPEDRYGRPGFLQLLERI 140 (163)
T ss_dssp SEEEEE-TTS-EEEE-ESS--SS-BTTB--HHHHHHHH
T ss_pred CceEEECCCCCeeee-eeecCCCCCCCCccHHHHHHHH
Confidence 998888 48876554 333333 3566666554
No 128
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.86 E-value=2.2e-08 Score=76.30 Aligned_cols=73 Identities=14% Similarity=0.240 Sum_probs=59.5
Q ss_pred CCCcEEEEEEcCC-ChhhhhhhHHHHHHHHHhcCceEEEEEeCCC-----------------------ChHHHHHcCCCc
Q 030165 93 SENPVLVEFWAPW-CGPCRMIAPAIEELAKEYAGKVACFKLNTDD-----------------------SPNIATKYGIRS 148 (182)
Q Consensus 93 ~~~~vlV~F~a~w-C~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~-----------------------~~~l~~~~~I~~ 148 (182)
.++++||+||+.| |++|....|.|.++++++. ++.++.|+.|. ...+++.||+..
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~ 121 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAI 121 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCee
Confidence 4789999999999 9999999999999999985 57888776642 225778899988
Q ss_pred cc---------EEEEE-ECCeEEEEEEc
Q 030165 149 IP---------TVLFF-KNGEKKESIIG 166 (182)
Q Consensus 149 iP---------Tl~~f-~~G~~v~~~~G 166 (182)
.| +.+++ ++|+++....+
T Consensus 122 ~~~~~~g~~~r~tfvId~~G~I~~~~~~ 149 (167)
T PRK00522 122 AEGPLKGLLARAVFVLDENNKVVYSELV 149 (167)
T ss_pred cccccCCceeeEEEEECCCCeEEEEEEC
Confidence 77 77777 59998888764
No 129
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.86 E-value=3.7e-08 Score=72.87 Aligned_cols=83 Identities=14% Similarity=0.300 Sum_probs=62.2
Q ss_pred CcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCC---------------------CC--hHHHHHcCCCc-
Q 030165 95 NPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTD---------------------DS--PNIATKYGIRS- 148 (182)
Q Consensus 95 ~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d---------------------~~--~~l~~~~~I~~- 148 (182)
++++|.|| +.||+.|....|.++++++++.+ ++.++.|+.| .. ..+++.||+..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 78888887 99999999999999999999863 5777777653 23 45778888873
Q ss_pred ---cc--EEEEE-ECCeEEEEEEcCC----CHHHHHHHH
Q 030165 149 ---IP--TVLFF-KNGEKKESIIGAV----PKSTLSSTL 177 (182)
Q Consensus 149 ---iP--Tl~~f-~~G~~v~~~~G~~----~~~~l~~~l 177 (182)
+| +++++ ++|+.+..+.|.. +..++.+.|
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 147 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEAL 147 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHh
Confidence 33 66677 5999999998865 344454444
No 130
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.85 E-value=8.2e-08 Score=69.09 Aligned_cols=94 Identities=13% Similarity=0.089 Sum_probs=73.1
Q ss_pred HHHHcCCCcEEEEEEcC----CChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC--hHHHHHcCCCcccEEEEE---E-C
Q 030165 88 NLVISSENPVLVEFWAP----WCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS--PNIATKYGIRSIPTVLFF---K-N 157 (182)
Q Consensus 88 ~~~~~~~~~vlV~F~a~----wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~--~~l~~~~~I~~iPTl~~f---~-~ 157 (182)
+...++.|.++|+++++ ||..|+..... +++.+.+..++.++..|++.. .+++..++++++|+++++ . +
T Consensus 11 ~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~ 89 (116)
T cd02991 11 NDAKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNR 89 (116)
T ss_pred HHHHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCc
Confidence 33567899999999999 89999655311 344444455688888888754 568999999999999998 2 3
Q ss_pred CeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165 158 GEKKESIIGAVPKSTLSSTLDKYVE 182 (182)
Q Consensus 158 G~~v~~~~G~~~~~~l~~~l~~~l~ 182 (182)
.+.+.++.|..++++|...|...++
T Consensus 90 ~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 90 MTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred eEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 4568899999999999999988763
No 131
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.85 E-value=6.4e-10 Score=87.76 Aligned_cols=99 Identities=24% Similarity=0.543 Sum_probs=87.1
Q ss_pred ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165 77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDSPNIATKYGIRSIPTVLFF 155 (182)
Q Consensus 77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f 155 (182)
.+..+++++|..++ ..-.+++|+|+||+.|+...|.++.++.--.+ .+.+.+||+..++.+..+|-|...|||...
T Consensus 25 ~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHv 101 (248)
T KOG0913|consen 25 KLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHV 101 (248)
T ss_pred eeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEe
Confidence 58899999999954 35679999999999999999999998854333 489999999999999999999999999999
Q ss_pred ECCeEEEEEEcCCCHHHHHHHHHH
Q 030165 156 KNGEKKESIIGAVPKSTLSSTLDK 179 (182)
Q Consensus 156 ~~G~~v~~~~G~~~~~~l~~~l~~ 179 (182)
+||. -.++.|+.+.+++..+++.
T Consensus 102 kDGe-FrrysgaRdk~dfisf~~~ 124 (248)
T KOG0913|consen 102 KDGE-FRRYSGARDKNDFISFEEH 124 (248)
T ss_pred eccc-cccccCcccchhHHHHHHh
Confidence 9995 5789999999999998864
No 132
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.84 E-value=2.6e-08 Score=71.18 Aligned_cols=70 Identities=31% Similarity=0.747 Sum_probs=59.2
Q ss_pred CCCcEEEEEEcC-CChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCC---------------------hHHHHHcCCC--
Q 030165 93 SENPVLVEFWAP-WCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDS---------------------PNIATKYGIR-- 147 (182)
Q Consensus 93 ~~~~vlV~F~a~-wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~---------------------~~l~~~~~I~-- 147 (182)
.+++++|.||+. ||+.|+...+.+.++.++++. ++.++.|..|.. .++++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 579999999999 999999999999999999875 489999987543 3578889999
Q ss_pred ----cccEEEEEE-CCeEEE
Q 030165 148 ----SIPTVLFFK-NGEKKE 162 (182)
Q Consensus 148 ----~iPTl~~f~-~G~~v~ 162 (182)
.+|+++++. +|+++.
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 999998885 676653
No 133
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.84 E-value=3.1e-08 Score=72.98 Aligned_cols=84 Identities=11% Similarity=0.192 Sum_probs=65.1
Q ss_pred CCCcEEEEEEcCC-ChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC-----------------------hHHHHHcCCCc
Q 030165 93 SENPVLVEFWAPW-CGPCRMIAPAIEELAKEYAGKVACFKLNTDDS-----------------------PNIATKYGIRS 148 (182)
Q Consensus 93 ~~~~vlV~F~a~w-C~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~-----------------------~~l~~~~~I~~ 148 (182)
.++++||+||+.| |++|+...+.|+++.+++. ++.++.|+.|.. ..+++.||+..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 4789999999998 6999999999999999986 588888887531 34667788763
Q ss_pred ------ccEEEEE-ECCeEEEEEEcCC--CHHHHHHHH
Q 030165 149 ------IPTVLFF-KNGEKKESIIGAV--PKSTLSSTL 177 (182)
Q Consensus 149 ------iPTl~~f-~~G~~v~~~~G~~--~~~~l~~~l 177 (182)
.|+.+++ ++|+++....|.. ...++.+.|
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 6887777 5999999888753 344555544
No 134
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.81 E-value=7.6e-08 Score=74.67 Aligned_cols=87 Identities=14% Similarity=0.179 Sum_probs=65.7
Q ss_pred CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC-------------------------ChHHHHHcC
Q 030165 93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD-------------------------SPNIATKYG 145 (182)
Q Consensus 93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~-------------------------~~~l~~~~~ 145 (182)
.++++||+|| +.||++|....+.|.++.+++.+ .+.++.|..|. ...+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 4689999999 99999999999999999988853 46777776553 225778899
Q ss_pred CC------cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHH
Q 030165 146 IR------SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDK 179 (182)
Q Consensus 146 I~------~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~ 179 (182)
|. ..|+.+++ ++|++.....+.. +.+++.+.|+.
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 86 46877777 5999888775432 56666666643
No 135
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.81 E-value=2.4e-08 Score=77.35 Aligned_cols=89 Identities=13% Similarity=0.264 Sum_probs=66.8
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC--------Ch---HHHH-HcCCC------------
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD--------SP---NIAT-KYGIR------------ 147 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~--------~~---~l~~-~~~I~------------ 147 (182)
.++++||.|||+||++|++ .+.|+++.++|.+ .+.++.+.+++ .. +.++ +|++.
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~Fpv~~k~dvnG~ 102 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVTFPMFSKIEVNGE 102 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCCceeEEEEccCCC
Confidence 4799999999999999975 7799999999975 48888887742 12 2343 45543
Q ss_pred -----------ccc--------------------------------EEEEEECCeEEEEEEcCCCHHH--HHHHHHHHhC
Q 030165 148 -----------SIP--------------------------------TVLFFKNGEKKESIIGAVPKST--LSSTLDKYVE 182 (182)
Q Consensus 148 -----------~iP--------------------------------Tl~~f~~G~~v~~~~G~~~~~~--l~~~l~~~l~ 182 (182)
..| .+++-++|+.+.|+.....+.+ |++.|+++|+
T Consensus 103 ~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r~~~~~~p~~~~i~~~i~~~l~ 182 (183)
T PRK10606 103 GRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQRFSPDMTPEDPIVMESIKLALA 182 (183)
T ss_pred CCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEEECCCCCCCHHHHHHHHHHHhc
Confidence 233 3455589999999988777666 9999998873
No 136
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.79 E-value=7e-08 Score=71.06 Aligned_cols=73 Identities=21% Similarity=0.339 Sum_probs=54.5
Q ss_pred CCcE-EEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCC---------------------hHHHHHcCCC---
Q 030165 94 ENPV-LVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDS---------------------PNIATKYGIR--- 147 (182)
Q Consensus 94 ~~~v-lV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~---------------------~~l~~~~~I~--- 147 (182)
++++ |++||+.||++|+...+.|.++.+++.+ .+.++.|+.+.. ..+.+.||+.
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~~ 102 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRSL 102 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceecC
Confidence 3454 5555699999999999999999999853 488888877543 3466778884
Q ss_pred --------------------------cccEEEEEE-CCeEEEEEEc
Q 030165 148 --------------------------SIPTVLFFK-NGEKKESIIG 166 (182)
Q Consensus 148 --------------------------~iPTl~~f~-~G~~v~~~~G 166 (182)
.+|+.+++. +|++...+.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 103 PWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred cHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 688888884 7777666554
No 137
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.77 E-value=1.4e-07 Score=76.54 Aligned_cols=87 Identities=18% Similarity=0.340 Sum_probs=71.6
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC-----------hHHHHHcCCCcccEEEEEE-C-Ce
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS-----------PNIATKYGIRSIPTVLFFK-N-GE 159 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~-----------~~l~~~~~I~~iPTl~~f~-~-G~ 159 (182)
.++.-|++||.+.|++|.++.|+++.++++|+ +.++.|++|.. ..+++++||..+|+++++. + ++
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~ 226 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQK 226 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCc
Confidence 46688999999999999999999999999997 66667776654 4589999999999999985 4 44
Q ss_pred EEEEEEcCCCHHHHHHHHHHHh
Q 030165 160 KKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 160 ~v~~~~G~~~~~~l~~~l~~~l 181 (182)
..---.|.++.++|.+-|...+
T Consensus 227 ~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 227 MSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred EEEEeeccCCHHHHHHHHHHHH
Confidence 4445569999999998877654
No 138
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.77 E-value=2.7e-08 Score=66.52 Aligned_cols=59 Identities=19% Similarity=0.400 Sum_probs=46.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH-----HHHHcCCCcccEEEEEECCeE
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN-----IATKYGIRSIPTVLFFKNGEK 160 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~-----l~~~~~I~~iPTl~~f~~G~~ 160 (182)
|+.|+++||++|+.+.+.++++. .++++.++.+|.+++.. +.+.+|+.++|++++ +|+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~ 64 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKF 64 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEE
Confidence 57899999999999999999986 33447788888775543 667789999999843 7754
No 139
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.75 E-value=7.5e-08 Score=77.27 Aligned_cols=81 Identities=19% Similarity=0.356 Sum_probs=62.4
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEe---------------------------------------
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLN--------------------------------------- 133 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd--------------------------------------- 133 (182)
+++.+++.|..+.|++|+++.+.++++.+. .+.+..+.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 467789999999999999999998877541 23333221
Q ss_pred -----CCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165 134 -----TDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY 180 (182)
Q Consensus 134 -----~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~ 180 (182)
++++.++++++||+++||++ |.||+.+ .|..++++|.++|++.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 12334588999999999998 7789754 8999999999999864
No 140
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.73 E-value=1.1e-07 Score=68.66 Aligned_cols=75 Identities=24% Similarity=0.514 Sum_probs=52.8
Q ss_pred hhHHHHHH---cCCCcEEEEEEc-------CCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC-------ChHHHH--Hc
Q 030165 84 SSWENLVI---SSENPVLVEFWA-------PWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD-------SPNIAT--KY 144 (182)
Q Consensus 84 ~~~~~~~~---~~~~~vlV~F~a-------~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~-------~~~l~~--~~ 144 (182)
++|.+.+. .++++++|+|++ +||+.|+...|.+++.-...+++..++.+.+.+ +...-. ++
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~ 85 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDL 85 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEccee
Confidence 45555553 356889999985 599999999999999888887788999888743 223333 49
Q ss_pred CCCcccEEEEEECC
Q 030165 145 GIRSIPTVLFFKNG 158 (182)
Q Consensus 145 ~I~~iPTl~~f~~G 158 (182)
+|++|||++-+..+
T Consensus 86 ~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 86 KLKGIPTLIRWETG 99 (119)
T ss_dssp ---SSSEEEECTSS
T ss_pred eeeecceEEEECCC
Confidence 99999999999766
No 141
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=3.4e-07 Score=65.87 Aligned_cols=98 Identities=17% Similarity=0.397 Sum_probs=81.3
Q ss_pred ChhhHHHHHH-cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeE
Q 030165 82 TDSSWENLVI-SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK 160 (182)
Q Consensus 82 ~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~ 160 (182)
+....+..+. .+++.|||.|...|-+.|.+|...|.+++++..+-..++-+|+|+.+++.+-|++...||+++|-|++-
T Consensus 10 s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH 89 (142)
T KOG3414|consen 10 SGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH 89 (142)
T ss_pred cHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence 4455555444 468899999999999999999999999999998888899999999999999999999999999988876
Q ss_pred EEEEEcC----------CCHHHHHHHHHH
Q 030165 161 KESIIGA----------VPKSTLSSTLDK 179 (182)
Q Consensus 161 v~~~~G~----------~~~~~l~~~l~~ 179 (182)
+.-..|. .+++++.+.++-
T Consensus 90 mkiD~gtgdn~Kin~~~~~kq~~Idiie~ 118 (142)
T KOG3414|consen 90 MKIDLGTGDNNKINFAFEDKQEFIDIIET 118 (142)
T ss_pred EEEeeCCCCCceEEEEeccHHHHHHHHHH
Confidence 6644442 356777777764
No 142
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.71 E-value=1.2e-07 Score=69.23 Aligned_cols=77 Identities=19% Similarity=0.367 Sum_probs=61.8
Q ss_pred CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCCC----------------------ChHHHHHcCCCc
Q 030165 93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYA-GKVACFKLNTDD----------------------SPNIATKYGIRS 148 (182)
Q Consensus 93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~-~~v~~~~vd~d~----------------------~~~l~~~~~I~~ 148 (182)
.+++++|.|| +.||+.|....+.+.++.+++. +.+.++.|..|. ...+++.||+..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 5889999999 7899999999999999999884 357888777643 224677788887
Q ss_pred cc---------EEEEE-ECCeEEEEEEcCCC
Q 030165 149 IP---------TVLFF-KNGEKKESIIGAVP 169 (182)
Q Consensus 149 iP---------Tl~~f-~~G~~v~~~~G~~~ 169 (182)
.| +++++ ++|+.+.++.|...
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 66 66666 58999999998765
No 143
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.2e-08 Score=80.24 Aligned_cols=81 Identities=25% Similarity=0.514 Sum_probs=75.3
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHH
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKST 172 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~ 172 (182)
.++.+++.||++|+.+|+++..+++.+++.. .++.|++++.++.+++++.+.|.+.|.+.++..|+.+.+..|..+...
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~~ 94 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPFL 94 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHHH
Confidence 7889999999999999999999999999998 569999999999999999999999999999999999999999877654
Q ss_pred HH
Q 030165 173 LS 174 (182)
Q Consensus 173 l~ 174 (182)
..
T Consensus 95 ~~ 96 (227)
T KOG0911|consen 95 VS 96 (227)
T ss_pred HH
Confidence 43
No 144
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.70 E-value=7.9e-08 Score=70.46 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=38.6
Q ss_pred CCCcEEEEEEcCCChh-hhhhhHHHHHHHHHhcC----ceEEEEEeCCC
Q 030165 93 SENPVLVEFWAPWCGP-CRMIAPAIEELAKEYAG----KVACFKLNTDD 136 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~-C~~~~p~l~~~a~~~~~----~v~~~~vd~d~ 136 (182)
.++++||.||++||++ |....+.+.++.+++.+ ++.++.|+.|.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 5789999999999998 99999999999998865 38888888753
No 145
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.68 E-value=3e-07 Score=72.23 Aligned_cols=89 Identities=15% Similarity=0.137 Sum_probs=66.5
Q ss_pred CCCcEEE-EEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC---------------------------ChHHHHH
Q 030165 93 SENPVLV-EFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD---------------------------SPNIATK 143 (182)
Q Consensus 93 ~~~~vlV-~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~---------------------------~~~l~~~ 143 (182)
.++.++| .||+.||+.|....+.|.++++++.+ ++.++.++.|. +..+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 3566555 68999999999999999999988864 46777776552 2357778
Q ss_pred cCCC------cccEEEEEE-CCeEEEEE----EcCCCHHHHHHHHHHHh
Q 030165 144 YGIR------SIPTVLFFK-NGEKKESI----IGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 144 ~~I~------~iPTl~~f~-~G~~v~~~----~G~~~~~~l~~~l~~~l 181 (182)
||+. .+|+++++. +|++.... .+..+.+++.+.|+.+.
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 8884 589988884 88776655 33457888888887764
No 146
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.66 E-value=6.6e-07 Score=69.56 Aligned_cols=88 Identities=13% Similarity=0.167 Sum_probs=67.0
Q ss_pred CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC-------------------------ChHHHHHcC
Q 030165 93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD-------------------------SPNIATKYG 145 (182)
Q Consensus 93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~-------------------------~~~l~~~~~ 145 (182)
.++++|+.|| +.||+.|....+.|.+..+++.+ ++.++.|+.|. +..+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 4679999999 99999999999999999998853 46666666543 346788899
Q ss_pred C----Ccc--cEEEEE-ECCeEEEEEEcC----CCHHHHHHHHHHH
Q 030165 146 I----RSI--PTVLFF-KNGEKKESIIGA----VPKSTLSSTLDKY 180 (182)
Q Consensus 146 I----~~i--PTl~~f-~~G~~v~~~~G~----~~~~~l~~~l~~~ 180 (182)
+ .++ |+.+++ ++|+++...... .+.+++.+.|+.+
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 8 356 988888 489887776542 3677777777654
No 147
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.64 E-value=7.2e-07 Score=67.90 Aligned_cols=107 Identities=21% Similarity=0.414 Sum_probs=87.9
Q ss_pred hhccCccEEcChhhHHHHHHcCCCc-EEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCC--c
Q 030165 72 REAVNEVQVVTDSSWENLVISSENP-VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIR--S 148 (182)
Q Consensus 72 ~~~~~~v~~l~~~~~~~~~~~~~~~-vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~--~ 148 (182)
...-..+.++|.+++.. +...+.+ +++.|..........+...++++++++.+++.|+.+|.+..+.+++.||+. .
T Consensus 73 ~~~~P~v~~~t~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~ 151 (184)
T PF13848_consen 73 KNSFPLVPELTPENFEK-LFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDD 151 (184)
T ss_dssp HHSSTSCEEESTTHHHH-HHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSS
T ss_pred HhccccccccchhhHHH-HhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCcc
Confidence 33446689999999998 5455655 888888777888888999999999999999999999999999999999998 8
Q ss_pred ccEEEEEE--CCeEEEEEEcCCCHHHHHHHHHH
Q 030165 149 IPTVLFFK--NGEKKESIIGAVPKSTLSSTLDK 179 (182)
Q Consensus 149 iPTl~~f~--~G~~v~~~~G~~~~~~l~~~l~~ 179 (182)
+|++++++ +++......|..+.+.+.+|++.
T Consensus 152 ~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 152 LPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp SSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 99999997 44433334788899999999874
No 148
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.63 E-value=5.2e-07 Score=72.88 Aligned_cols=87 Identities=15% Similarity=0.285 Sum_probs=69.8
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC-----------ChHHHHHcCCCcccEEEEEE-C-Ce
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD-----------SPNIATKYGIRSIPTVLFFK-N-GE 159 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~-----------~~~l~~~~~I~~iPTl~~f~-~-G~ 159 (182)
.++.-|++||.+.|++|.++.|+++.++++|+ +.++.|++|. +...++++||..+|+++++. + ++
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~ 219 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGS 219 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCc
Confidence 45688999999999999999999999999997 5555555543 23477899999999999995 3 45
Q ss_pred EEEEEEcCCCHHHHHHHHHHHh
Q 030165 160 KKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 160 ~v~~~~G~~~~~~l~~~l~~~l 181 (182)
..---.|.++.++|.+-|....
T Consensus 220 ~~pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 220 VRPLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred EEEEeeccCCHHHHHHHHHHHH
Confidence 5556679999999988876553
No 149
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.62 E-value=4.4e-07 Score=61.35 Aligned_cols=76 Identities=14% Similarity=0.309 Sum_probs=57.6
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh----HHHHHcC--CCcccEEEEEECCeEEEEEEcCCCH
Q 030165 97 VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP----NIATKYG--IRSIPTVLFFKNGEKKESIIGAVPK 170 (182)
Q Consensus 97 vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~----~l~~~~~--I~~iPTl~~f~~G~~v~~~~G~~~~ 170 (182)
-++.|+.+||++|+.....|+++..++. ++.+..+|++++. ++.+.++ +.++|++++ ||+.+ | .-
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~i----g--g~ 72 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHI----G--GC 72 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEE----c--CH
Confidence 3778999999999999999999998764 4888899998653 4655555 589999864 88653 2 44
Q ss_pred HHHHHHHHHHh
Q 030165 171 STLSSTLDKYV 181 (182)
Q Consensus 171 ~~l~~~l~~~l 181 (182)
++|.++++..+
T Consensus 73 ~~~~~~~~~~~ 83 (85)
T PRK11200 73 TDFEAYVKENL 83 (85)
T ss_pred HHHHHHHHHhc
Confidence 66777776543
No 150
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.61 E-value=1.5e-07 Score=73.41 Aligned_cols=77 Identities=22% Similarity=0.413 Sum_probs=57.2
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEE----------------------------------------
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKL---------------------------------------- 132 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~v---------------------------------------- 132 (182)
+.+..++.|..++|++|+++.+.+++ ..+++.+..+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 46789999999999999999998876 1222332222
Q ss_pred -----eCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHH
Q 030165 133 -----NTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTL 177 (182)
Q Consensus 133 -----d~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l 177 (182)
+++++.++++++||+++||++ |.||+. +.|..+.++|.++|
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred cccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 112333588899999999997 888875 57888988888764
No 151
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.61 E-value=4e-07 Score=58.67 Aligned_cols=68 Identities=22% Similarity=0.456 Sum_probs=50.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHc----CCCcccEEEEEECCeEEEEEEcCCCHHHH
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKY----GIRSIPTVLFFKNGEKKESIIGAVPKSTL 173 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~----~I~~iPTl~~f~~G~~v~~~~G~~~~~~l 173 (182)
++.|+++||++|+.+...+++. ++.+..+|++.+.+..+.+ ++.++|++++ +| ..+.| .+.++|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~---~~i~g-~~~~~l 69 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD---EHLSG-FRPDKL 69 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC---EEEec-CCHHHH
Confidence 5789999999999998888763 3677788888776655444 7899999976 55 24444 566677
Q ss_pred HHHH
Q 030165 174 SSTL 177 (182)
Q Consensus 174 ~~~l 177 (182)
+++|
T Consensus 70 ~~~~ 73 (73)
T cd02976 70 RALL 73 (73)
T ss_pred HhhC
Confidence 7664
No 152
>PRK15000 peroxidase; Provisional
Probab=98.58 E-value=1.1e-06 Score=68.99 Aligned_cols=88 Identities=16% Similarity=0.336 Sum_probs=68.0
Q ss_pred CCCcEEEEEEc-CCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHH
Q 030165 93 SENPVLVEFWA-PWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD----------------------------SPNIAT 142 (182)
Q Consensus 93 ~~~~vlV~F~a-~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~----------------------------~~~l~~ 142 (182)
.++++||+||+ .||+.|....+.|.++++++.. ++.++.+.+|. ..++++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 47899999999 5999999999999999999863 46777776652 224667
Q ss_pred HcCCC------cccEEEEEE-CCeEEEEEEcCC----CHHHHHHHHHHH
Q 030165 143 KYGIR------SIPTVLFFK-NGEKKESIIGAV----PKSTLSSTLDKY 180 (182)
Q Consensus 143 ~~~I~------~iPTl~~f~-~G~~v~~~~G~~----~~~~l~~~l~~~ 180 (182)
.||+. ++|+.+++. +|++.....|.. +.+++.+.|+.+
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 78887 799888885 999888877643 566777766653
No 153
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.58 E-value=5.7e-07 Score=80.59 Aligned_cols=96 Identities=17% Similarity=0.285 Sum_probs=79.2
Q ss_pred CccEEcChhhHHHHHHcCCCcE-EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165 76 NEVQVVTDSSWENLVISSENPV-LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF 154 (182)
Q Consensus 76 ~~v~~l~~~~~~~~~~~~~~~v-lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~ 154 (182)
+....++.+..+. +..-++++ +-.|..++|++|......+++++...+ ++..-.+|..+.++++++|+|.++|++++
T Consensus 458 ~~~~~l~~~~~~~-i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~~~i 535 (555)
T TIGR03143 458 GPGQPLGEELLEK-IKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAIVV 535 (555)
T ss_pred CCCCCCCHHHHHH-HHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHHHHHhCCceecCEEEE
Confidence 4455666666665 55556676 445689999999999999999999987 59999999999999999999999999988
Q ss_pred EECCeEEEEEEcCCCHHHHHHHH
Q 030165 155 FKNGEKKESIIGAVPKSTLSSTL 177 (182)
Q Consensus 155 f~~G~~v~~~~G~~~~~~l~~~l 177 (182)
||+.+ +.|..+.+++.+||
T Consensus 536 --~~~~~--~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 536 --DDQQV--YFGKKTIEEMLELI 554 (555)
T ss_pred --CCEEE--EeeCCCHHHHHHhh
Confidence 88754 55888999999886
No 154
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.54 E-value=3.8e-06 Score=61.10 Aligned_cols=97 Identities=15% Similarity=0.340 Sum_probs=77.1
Q ss_pred ChhhHHHHHH-cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCccc-EEEEEECCe
Q 030165 82 TDSSWENLVI-SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIP-TVLFFKNGE 159 (182)
Q Consensus 82 ~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iP-Tl~~f~~G~ 159 (182)
+....++.+. +.++.|++.|..+|=+.|.++...+.+.+++...-..++.+|+++.+++-+-|.+. .| |+++|-+++
T Consensus 7 s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk 85 (133)
T PF02966_consen 7 SGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK 85 (133)
T ss_dssp SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred ccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence 4455666554 46899999999999999999999999999999988899999999999999999999 77 677777888
Q ss_pred EEEEEEcC----------CCHHHHHHHHHH
Q 030165 160 KKESIIGA----------VPKSTLSSTLDK 179 (182)
Q Consensus 160 ~v~~~~G~----------~~~~~l~~~l~~ 179 (182)
.+.-..|. .++++|.+.++-
T Consensus 86 hm~vD~GtgnnnKin~~~~~kqe~iDiie~ 115 (133)
T PF02966_consen 86 HMMVDFGTGNNNKINWAFEDKQEFIDIIET 115 (133)
T ss_dssp EEEEESSSSSSSSBCS--SCHHHHHHHHHH
T ss_pred EEEEEecCCCccEEEEEcCcHHHHHHHHHH
Confidence 77655442 246777777764
No 155
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.54 E-value=1.4e-06 Score=72.73 Aligned_cols=105 Identities=16% Similarity=0.251 Sum_probs=73.3
Q ss_pred cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhH-------HHHHHHHHhc-CceEEEEEeCCCChHHHHHcCC
Q 030165 75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAP-------AIEELAKEYA-GKVACFKLNTDDSPNIATKYGI 146 (182)
Q Consensus 75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p-------~l~~~a~~~~-~~v~~~~vd~d~~~~l~~~~~I 146 (182)
...+..++..||.+ +++....++|+|+.|- +.-+.... .++-.|+-+. ..+.|+.||...+..+++++|+
T Consensus 33 kDRVi~LneKNfk~-~lKkyd~l~l~yh~p~-~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv 110 (383)
T PF01216_consen 33 KDRVIDLNEKNFKR-ALKKYDVLVLYYHEPV-ESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGV 110 (383)
T ss_dssp S--CEEE-TTTHHH-HHHH-SEEEEEEE--S-TSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT-
T ss_pred ccceEEcchhHHHH-HHHhhcEEEEEEecCC-ccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCc
Confidence 35689999999999 5566678888888876 33333322 2233333333 3499999999999999999999
Q ss_pred CcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165 147 RSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182 (182)
Q Consensus 147 ~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~ 182 (182)
...+++.+|++|+.+... |..+++.|..||-.+++
T Consensus 111 ~E~~SiyVfkd~~~IEyd-G~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 111 EEEGSIYVFKDGEVIEYD-GERSADTLVEFLLDLLE 145 (383)
T ss_dssp -STTEEEEEETTEEEEE--S--SHHHHHHHHHHHHS
T ss_pred cccCcEEEEECCcEEEec-CccCHHHHHHHHHHhcc
Confidence 999999999999887665 99999999999988874
No 156
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.52 E-value=1.2e-06 Score=62.54 Aligned_cols=102 Identities=12% Similarity=0.092 Sum_probs=80.2
Q ss_pred cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHH---hcCceEEEEEeCCCChHHHHHcCCCc--ccEE
Q 030165 78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKE---YAGKVACFKLNTDDSPNIATKYGIRS--IPTV 152 (182)
Q Consensus 78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~---~~~~v~~~~vd~d~~~~l~~~~~I~~--iPTl 152 (182)
|.+++.++... +..++.+..+.|+.+ ..=..+...+.+++++ +.+++.|+.+|.++....++.||++. +|.+
T Consensus 1 ~~e~t~e~~~~-~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i 77 (111)
T cd03072 1 VREITFENAEE-LTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVI 77 (111)
T ss_pred CcccccccHHH-HhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEE
Confidence 35678888876 556777777777722 2236678899999999 99999999999999888999999997 8999
Q ss_pred EEEECCe-EEEE-EEcCCCHHHHHHHHHHHhC
Q 030165 153 LFFKNGE-KKES-IIGAVPKSTLSSTLDKYVE 182 (182)
Q Consensus 153 ~~f~~G~-~v~~-~~G~~~~~~l~~~l~~~l~ 182 (182)
.+..... .... ..+..+.+.|++|++++++
T Consensus 78 ~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 78 AIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 9996322 2222 5577899999999999874
No 157
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.51 E-value=5.9e-07 Score=72.93 Aligned_cols=85 Identities=14% Similarity=0.326 Sum_probs=62.3
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeC--------------------------------------
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT-------------------------------------- 134 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~-------------------------------------- 134 (182)
+.+.+|+.|..+.|++|+++...+.++.+. +++.+..+..
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~ 193 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKP 193 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCc
Confidence 456789999999999999999988877654 2344433321
Q ss_pred ------------CCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHH
Q 030165 135 ------------DDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 179 (182)
Q Consensus 135 ------------d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~ 179 (182)
+++.++++++||+++|++++-.....+..+.|..++++|.++|..
T Consensus 194 ~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~~ 250 (251)
T PRK11657 194 PASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMGP 250 (251)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhCC
Confidence 011237788999999999888532355678899999999998753
No 158
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.49 E-value=9.1e-07 Score=65.16 Aligned_cols=80 Identities=31% Similarity=0.535 Sum_probs=59.3
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC--C----------------C-----------------
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD--D----------------S----------------- 137 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d--~----------------~----------------- 137 (182)
..+.+|+.|+.++|++|+.+.+.++++..+++ ++.++..+.- . .
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~ 82 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP-DVRVVFKEFPILGESSVLAARVALAVWKNGPGKYLEFHNALMATRGR 82 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC-CceEEEEeCCccCcchHHHHHHHHHHHHhChhHHHHHHHHHHhcCCC
Confidence 35778999999999999999999999887764 4544443320 0 0
Q ss_pred ------------------------------------hHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHH
Q 030165 138 ------------------------------------PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178 (182)
Q Consensus 138 ------------------------------------~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~ 178 (182)
.+++.++||.++||+++ ||+ .+.|..+.+.|.+.|+
T Consensus 83 ~~~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~gtPt~~v--~g~---~~~G~~~~~~l~~~i~ 154 (154)
T cd03023 83 LNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALGITGTPAFII--GDT---VIPGAVPADTLKEAID 154 (154)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcCCCcCCeEEE--CCE---EecCCCCHHHHHHHhC
Confidence 02445689999999877 674 5789999999888764
No 159
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.49 E-value=9.7e-07 Score=62.45 Aligned_cols=95 Identities=18% Similarity=0.309 Sum_probs=72.7
Q ss_pred CccEEcChhhHHHHHHcCCCcEEEEEEcCCC---hhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEE
Q 030165 76 NEVQVVTDSSWENLVISSENPVLVEFWAPWC---GPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTV 152 (182)
Q Consensus 76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC---~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl 152 (182)
.....++.++++..+.. +...+ .|++..+ +.+....-++-++.+.+++.+..+.++.+....+..+||+..+|++
T Consensus 9 ~g~~~vd~~~ld~~l~~-~~~~v-lf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaL 86 (107)
T PF07449_consen 9 HGWPRVDADTLDAFLAA-PGDAV-LFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPAL 86 (107)
T ss_dssp -TEEEE-CCCHHHHHHC-CSCEE-EEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEE
T ss_pred cCCeeechhhHHHHHhC-CCcEE-EEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeE
Confidence 35677889999985544 44444 4555444 4455555588999999999999999998888999999999999999
Q ss_pred EEEECCeEEEEEEcCCCHHH
Q 030165 153 LFFKNGEKKESIIGAVPKST 172 (182)
Q Consensus 153 ~~f~~G~~v~~~~G~~~~~~ 172 (182)
++|++|+.+..+.|..+-++
T Consensus 87 vf~R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 87 VFFRDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp EEEETTEEEEEEESSSTHHH
T ss_pred EEEECCEEEEEecCeecccc
Confidence 99999999999999877554
No 160
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=6.6e-07 Score=63.89 Aligned_cols=74 Identities=24% Similarity=0.480 Sum_probs=59.3
Q ss_pred hhHHHHHH--cCCCcEEEEEEc--------CCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC-------ChHHHHHcCC
Q 030165 84 SSWENLVI--SSENPVLVEFWA--------PWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD-------SPNIATKYGI 146 (182)
Q Consensus 84 ~~~~~~~~--~~~~~vlV~F~a--------~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~-------~~~l~~~~~I 146 (182)
++|++.+. .+++.++|+|++ +||+.|.+..|++.+.-+..+.++.|+.+++.+ +..+-...++
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~ 92 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGI 92 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCc
Confidence 45665443 255669999996 699999999999999999888899999999854 3345666777
Q ss_pred -CcccEEEEEEC
Q 030165 147 -RSIPTVLFFKN 157 (182)
Q Consensus 147 -~~iPTl~~f~~ 157 (182)
.++||++=+++
T Consensus 93 lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 93 LTAVPTLLRWKR 104 (128)
T ss_pred eeecceeeEEcC
Confidence 99999999975
No 161
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.42 E-value=3e-06 Score=66.56 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=63.8
Q ss_pred Cc-EEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC---------------------------ChHHHHHcC
Q 030165 95 NP-VLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD---------------------------SPNIATKYG 145 (182)
Q Consensus 95 ~~-vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~---------------------------~~~l~~~~~ 145 (182)
+. +|+.||++||+.|....+.|.++++++.+ ++.++.|++|. ...+++.||
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 44 56689999999999999999999999864 47888887664 224677888
Q ss_pred CC----cc----cEEEEE-ECCeEEEEEEcC----CCHHHHHHHHHHH
Q 030165 146 IR----SI----PTVLFF-KNGEKKESIIGA----VPKSTLSSTLDKY 180 (182)
Q Consensus 146 I~----~i----PTl~~f-~~G~~v~~~~G~----~~~~~l~~~l~~~ 180 (182)
+. +. |+.+++ ++|++.....+. .+.+++.+.|+.+
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred CccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 76 33 445666 689888777663 3567788877664
No 162
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.41 E-value=4.2e-06 Score=66.44 Aligned_cols=87 Identities=13% Similarity=0.176 Sum_probs=65.4
Q ss_pred CCc-EEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC---------------------------ChHHHHHc
Q 030165 94 ENP-VLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD---------------------------SPNIATKY 144 (182)
Q Consensus 94 ~~~-vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~---------------------------~~~l~~~~ 144 (182)
++. ||+.||+.||+.|....+.|.++++++.. ++.++.+++|. +..+++.|
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~y 107 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQL 107 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHc
Confidence 555 57899999999999999999999999863 47777777654 22467788
Q ss_pred CCC-------cccEEEEEE-CCeEEEEEEcC----CCHHHHHHHHHHH
Q 030165 145 GIR-------SIPTVLFFK-NGEKKESIIGA----VPKSTLSSTLDKY 180 (182)
Q Consensus 145 ~I~-------~iPTl~~f~-~G~~v~~~~G~----~~~~~l~~~l~~~ 180 (182)
|+. .+|+++++. +|++....... .+.+++.+.|+.+
T Consensus 108 g~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 108 GMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred CCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 873 689888884 88887765432 3577777777654
No 163
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.40 E-value=3.3e-06 Score=62.99 Aligned_cols=82 Identities=27% Similarity=0.456 Sum_probs=65.9
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHh--cCceEEEEEeCCCCh--------------------------------
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEY--AGKVACFKLNTDDSP-------------------------------- 138 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~--~~~v~~~~vd~d~~~-------------------------------- 138 (182)
..+++|+.|+..-|++|+.+.+.+.++.+++ ++++.++..+.-...
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 4567899999999999999999999999999 788888888651000
Q ss_pred ------------------------------------HHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHH
Q 030165 139 ------------------------------------NIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 179 (182)
Q Consensus 139 ------------------------------------~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~ 179 (182)
..+.++||.++||+++ ||+. +.|..+.+++.++|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~---~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY---VVGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE---EETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE---eCCCCCHHHHHHHHcC
Confidence 1446689999999998 9987 4788999999999985
No 164
>PRK13189 peroxiredoxin; Provisional
Probab=98.38 E-value=5.2e-06 Score=66.19 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=64.3
Q ss_pred CCCc-EEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC---------------------------ChHHHHH
Q 030165 93 SENP-VLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD---------------------------SPNIATK 143 (182)
Q Consensus 93 ~~~~-vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~---------------------------~~~l~~~ 143 (182)
.++. +|+.||++||+.|....+.|.++++++.+ ++.++.+.+|. ...+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 3564 45678899999999999999999998863 46777776653 2346778
Q ss_pred cCCC-------cccEEEEEE-CCeEEEEEEcC----CCHHHHHHHHHHH
Q 030165 144 YGIR-------SIPTVLFFK-NGEKKESIIGA----VPKSTLSSTLDKY 180 (182)
Q Consensus 144 ~~I~-------~iPTl~~f~-~G~~v~~~~G~----~~~~~l~~~l~~~ 180 (182)
||+. .+|+++++. +|++.....+. .+.+++.+.|+.+
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8875 468778884 88887766533 3567787777654
No 165
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.35 E-value=5e-06 Score=73.91 Aligned_cols=99 Identities=15% Similarity=0.210 Sum_probs=80.1
Q ss_pred cCccEEcChhhHHHHHHcCCCcE-EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165 75 VNEVQVVTDSSWENLVISSENPV-LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVL 153 (182)
Q Consensus 75 ~~~v~~l~~~~~~~~~~~~~~~v-lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~ 153 (182)
.+.-..++++..+. +.+-++++ +-.|..++|++|......+++++...+ ++.+-.+|..+.++++++|+|.++|+++
T Consensus 97 ~~~~~~l~~~~~~~-i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~~~~~~~~v~~VP~~~ 174 (517)
T PRK15317 97 GGHPPKLDQEVIEQ-IKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQDEVEARNIMAVPTVF 174 (517)
T ss_pred cCCCCCCCHHHHHH-HHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCHhHHHhcCCcccCEEE
Confidence 34455666666655 54545554 888999999999999999999998766 6999999999999999999999999996
Q ss_pred EEECCeEEEEEEcCCCHHHHHHHHHH
Q 030165 154 FFKNGEKKESIIGAVPKSTLSSTLDK 179 (182)
Q Consensus 154 ~f~~G~~v~~~~G~~~~~~l~~~l~~ 179 (182)
+ ||+. .+.|..+.++|.+.+.+
T Consensus 175 i--~~~~--~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 175 L--NGEE--FGQGRMTLEEILAKLDT 196 (517)
T ss_pred E--CCcE--EEecCCCHHHHHHHHhc
Confidence 6 7764 46688898888888764
No 166
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.34 E-value=2.9e-06 Score=64.36 Aligned_cols=40 Identities=28% Similarity=0.487 Sum_probs=34.4
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEE
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKL 132 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~v 132 (182)
..++.|+.|+...|++|+.+.+.+.++.+++++++.+..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKV 53 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEc
Confidence 4678999999999999999999999999988777665543
No 167
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.33 E-value=1.5e-05 Score=58.38 Aligned_cols=105 Identities=12% Similarity=0.235 Sum_probs=75.7
Q ss_pred ccEEcChhhHHHHHHcCCCcEEEEEEcCC---Chh-h-hhhhHHHHHHHHHhcCc-eEEEEEeCCCChHHHHHcCCC--c
Q 030165 77 EVQVVTDSSWENLVISSENPVLVEFWAPW---CGP-C-RMIAPAIEELAKEYAGK-VACFKLNTDDSPNIATKYGIR--S 148 (182)
Q Consensus 77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~w---C~~-C-~~~~p~l~~~a~~~~~~-v~~~~vd~d~~~~l~~~~~I~--~ 148 (182)
++.++++++..+..=.++..-+|-| -|. |.. + ..+...|.+++++|.++ +.|+.+|.++...+.+.|||. .
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~-l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~ 81 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAF-LPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFG 81 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEE-cCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccC
Confidence 4677776666442222233334444 432 322 2 35677899999999999 999999999999999999995 4
Q ss_pred ccEEEEEECCeEEEE-EEcCCCHHHHHHHHHHHhC
Q 030165 149 IPTVLFFKNGEKKES-IIGAVPKSTLSSTLDKYVE 182 (182)
Q Consensus 149 iPTl~~f~~G~~v~~-~~G~~~~~~l~~~l~~~l~ 182 (182)
+|+++++...+.... ..|..+.+.+.+|++++++
T Consensus 82 ~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 82 YPAMVAINFRKMKFATLKGSFSEDGINEFLRELSY 116 (130)
T ss_pred CCEEEEEecccCccccccCccCHHHHHHHHHHHHc
Confidence 999999964332222 6688999999999999874
No 168
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.33 E-value=8.7e-06 Score=64.62 Aligned_cols=88 Identities=10% Similarity=0.156 Sum_probs=64.2
Q ss_pred CCCcEE-EEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCC---------------------------hHHHHH
Q 030165 93 SENPVL-VEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDS---------------------------PNIATK 143 (182)
Q Consensus 93 ~~~~vl-V~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~---------------------------~~l~~~ 143 (182)
.++.++ +.||++||+.|....+.|.++++++.. ++.++.+++|.. .++++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 356655 488999999999999999999999853 477777776532 246677
Q ss_pred cCCC-------cccEEEEE-ECCeEEEEEEcC----CCHHHHHHHHHHH
Q 030165 144 YGIR-------SIPTVLFF-KNGEKKESIIGA----VPKSTLSSTLDKY 180 (182)
Q Consensus 144 ~~I~-------~iPTl~~f-~~G~~v~~~~G~----~~~~~l~~~l~~~ 180 (182)
||+. .+|+.+++ ++|++.....+. .+.+++.+.|+.+
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8863 46877777 488887766543 3567777777654
No 169
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.32 E-value=5.3e-06 Score=56.33 Aligned_cols=74 Identities=18% Similarity=0.294 Sum_probs=54.2
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh----HHHHHcCC--CcccEEEEEECCeEEEEEEcCCCHH
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP----NIATKYGI--RSIPTVLFFKNGEKKESIIGAVPKS 171 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~----~l~~~~~I--~~iPTl~~f~~G~~v~~~~G~~~~~ 171 (182)
++.|..+||++|++....|+++..++.+ +.+..+|++... ++.+.+|- .++|++++ ||+.+ | ..+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~-i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i----g--G~~ 72 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD-FEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV----G--GCT 72 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC-CcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe----c--CHH
Confidence 6789999999999999999998766543 677788887533 56667774 89999954 77542 2 346
Q ss_pred HHHHHHHHH
Q 030165 172 TLSSTLDKY 180 (182)
Q Consensus 172 ~l~~~l~~~ 180 (182)
+|.+++++.
T Consensus 73 dl~~~~~~~ 81 (86)
T TIGR02183 73 DFEQLVKEN 81 (86)
T ss_pred HHHHHHHhc
Confidence 677776653
No 170
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.31 E-value=1e-05 Score=66.03 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=65.3
Q ss_pred CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHH
Q 030165 93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD----------------------------SPNIAT 142 (182)
Q Consensus 93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~----------------------------~~~l~~ 142 (182)
.++++|++|| +.||+.|....+.|.+..+++.+ .+.++.|.+|. +.++++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4567777777 89999999999999999998863 36677776654 234778
Q ss_pred HcCCC-----cccEEEEEE-CCeEEEEEEc----CCCHHHHHHHHHHH
Q 030165 143 KYGIR-----SIPTVLFFK-NGEKKESIIG----AVPKSTLSSTLDKY 180 (182)
Q Consensus 143 ~~~I~-----~iPTl~~f~-~G~~v~~~~G----~~~~~~l~~~l~~~ 180 (182)
.||+. ..|+.++++ +|++...... ..+.+++.+.|+.+
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 89985 589888885 8988876642 23567777766543
No 171
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.25 E-value=6.8e-06 Score=51.70 Aligned_cols=55 Identities=20% Similarity=0.486 Sum_probs=43.1
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH----HHHHcCCCcccEEEEEECCeE
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN----IATKYGIRSIPTVLFFKNGEK 160 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~----l~~~~~I~~iPTl~~f~~G~~ 160 (182)
++.|+.+||++|++....|++. ++.+-.+|+++.++ +.+..|..++|++++ ||+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 5789999999999999888543 37788888887754 344459999999987 7764
No 172
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.23 E-value=9e-06 Score=53.15 Aligned_cols=68 Identities=22% Similarity=0.428 Sum_probs=50.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHc---CCCcccEEEEEECCeEEEEEEcCCCHHHHH
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKY---GIRSIPTVLFFKNGEKKESIIGAVPKSTLS 174 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~---~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~ 174 (182)
+..|+.++|++|++....|++. ++.+-.+|++++++..+.+ |..++|++++ +|+. ..|..+++.|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~---~~~G~~~~~~~ 69 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL---SWSGFRPDKLK 69 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc---EEeccCHHHHH
Confidence 3568899999999999998753 4788888998887766555 8889999755 5642 34446777776
Q ss_pred HH
Q 030165 175 ST 176 (182)
Q Consensus 175 ~~ 176 (182)
++
T Consensus 70 ~~ 71 (72)
T TIGR02194 70 AL 71 (72)
T ss_pred hc
Confidence 53
No 173
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.22 E-value=7.7e-06 Score=54.54 Aligned_cols=60 Identities=17% Similarity=0.314 Sum_probs=45.4
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC---hHHHHHcCCCcccEEEEEECCeE
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS---PNIATKYGIRSIPTVLFFKNGEK 160 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~---~~l~~~~~I~~iPTl~~f~~G~~ 160 (182)
+++.-|+.|+.+||++|++....|++. ++.+..+|+++. ..+....|..++|.+++ ||+.
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~ 67 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKL 67 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEE
Confidence 345557889999999999999999753 366667777765 34555679999999954 7864
No 174
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.22 E-value=9.6e-06 Score=57.86 Aligned_cols=99 Identities=14% Similarity=0.219 Sum_probs=72.3
Q ss_pred EcChhhHHHHHHcCCCcEEEEEE----cCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCCCChHHHHHcCCCc----cc
Q 030165 80 VVTDSSWENLVISSENPVLVEFW----APWCGPCRMIAPAIEELAKEYA-GKVACFKLNTDDSPNIATKYGIRS----IP 150 (182)
Q Consensus 80 ~l~~~~~~~~~~~~~~~vlV~F~----a~wC~~C~~~~p~l~~~a~~~~-~~v~~~~vd~d~~~~l~~~~~I~~----iP 150 (182)
+++.++..... .++.++.|+ ...=..=..+...+.++|+++. +++.|+.+|.++.....+.||+.. .|
T Consensus 3 ~~~~en~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P 79 (111)
T cd03073 3 HRTKDNRAQFT---KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKP 79 (111)
T ss_pred eeccchHHHhc---cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCC
Confidence 45666666632 344444443 2233444668889999999999 799999999999888999999985 99
Q ss_pred EEEEEECCeEEEEEEcCC-CHHHHHHHHHHHh
Q 030165 151 TVLFFKNGEKKESIIGAV-PKSTLSSTLDKYV 181 (182)
Q Consensus 151 Tl~~f~~G~~v~~~~G~~-~~~~l~~~l~~~l 181 (182)
++.++..........+.. +.+.|.+|+++++
T Consensus 80 ~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 80 VVAIRTAKGKKYVMEEEFSDVDALEEFLEDFF 111 (111)
T ss_pred EEEEEeCCCCccCCCcccCCHHHHHHHHHHhC
Confidence 999986322223345667 8999999998764
No 175
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.3e-05 Score=66.13 Aligned_cols=107 Identities=18% Similarity=0.343 Sum_probs=83.8
Q ss_pred hccCccEEcChhhHHHHHHcCCC--cEEEEEEcC----CChhhhhhhHHHHHHHHHhcC--------ceEEEEEeCCCCh
Q 030165 73 EAVNEVQVVTDSSWENLVISSEN--PVLVEFWAP----WCGPCRMIAPAIEELAKEYAG--------KVACFKLNTDDSP 138 (182)
Q Consensus 73 ~~~~~v~~l~~~~~~~~~~~~~~--~vlV~F~a~----wC~~C~~~~p~l~~~a~~~~~--------~v~~~~vd~d~~~ 138 (182)
.....+..+++++|...+....+ .++|.|.|. .|.-|+....+|.-++..+.. ++-|..||.|+.+
T Consensus 37 ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p 116 (331)
T KOG2603|consen 37 TSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP 116 (331)
T ss_pred cCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence 34577999999999997765444 478889874 599999999999999877631 5889999999999
Q ss_pred HHHHHcCCCcccEEEEEE--CCeEEE------EEEcCCCHHHHHHHHHHH
Q 030165 139 NIATKYGIRSIPTVLFFK--NGEKKE------SIIGAVPKSTLSSTLDKY 180 (182)
Q Consensus 139 ~l~~~~~I~~iPTl~~f~--~G~~v~------~~~G~~~~~~l~~~l~~~ 180 (182)
++.++++++++|++++|. .|+... ...|.. +|++.+|+++.
T Consensus 117 ~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~-Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 117 QVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFE-AEQIAQFVADR 165 (331)
T ss_pred HHHHHhcccCCCeEEEeCCCccccccCccchhhhcchh-HHHHHHHHHHh
Confidence 999999999999999993 333221 112333 88888888864
No 176
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.20 E-value=6.4e-06 Score=54.69 Aligned_cols=57 Identities=26% Similarity=0.495 Sum_probs=44.1
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh-----HHHHHcCCCcccEEEEEECCeE
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP-----NIATKYGIRSIPTVLFFKNGEK 160 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~-----~l~~~~~I~~iPTl~~f~~G~~ 160 (182)
++.|+++||++|+.+...|+++.. ...++.++.+++. .+.+.+|+.++|++ |.+|+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ 63 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKF 63 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 578999999999999999998765 3567778777652 35566799999997 447754
No 177
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.20 E-value=7.2e-06 Score=64.52 Aligned_cols=41 Identities=17% Similarity=0.420 Sum_probs=34.1
Q ss_pred CCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeC
Q 030165 94 ENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNT 134 (182)
Q Consensus 94 ~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~ 134 (182)
+++.||+|+.-.|++|..+.+.+ +++.+.+++++.++.+..
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 57889999999999999999976 888888887777665543
No 178
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.18 E-value=1.9e-05 Score=61.73 Aligned_cols=86 Identities=13% Similarity=0.245 Sum_probs=62.3
Q ss_pred CCCcEEEEEEc-CCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCC----------------------------hHHHH
Q 030165 93 SENPVLVEFWA-PWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDS----------------------------PNIAT 142 (182)
Q Consensus 93 ~~~~vlV~F~a-~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~----------------------------~~l~~ 142 (182)
.++.++|+||+ .||+.|....+.|.++++++.. ++.++.|+.|.. .++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 46789999994 8899999999999999999874 477777776522 24678
Q ss_pred HcCCC------cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHH
Q 030165 143 KYGIR------SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLD 178 (182)
Q Consensus 143 ~~~I~------~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~ 178 (182)
.||+. .+|+.+++ ++|+......+.. +.+++.+.|+
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~ 161 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLE 161 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence 88885 36887777 4888887776643 3344444443
No 179
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.17 E-value=1.5e-05 Score=53.43 Aligned_cols=76 Identities=25% Similarity=0.484 Sum_probs=61.4
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECC----eEEEEEEcCCCHHHH
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNG----EKKESIIGAVPKSTL 173 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G----~~v~~~~G~~~~~~l 173 (182)
|+.|..+.|+-|......++++....+ +.+-.+|+++++++.++|+. .+|.+.+ +| +......+..+.++|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d~~l~~~Y~~-~IPVl~~--~~~~~~~~~~~~~~~~d~~~L 76 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDEDPELFEKYGY-RIPVLHI--DGIRQFKEQEELKWRFDEEQL 76 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTTHHHHHHSCT-STSEEEE--TT-GGGCTSEEEESSB-HHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCCHHHHHHhcC-CCCEEEE--cCcccccccceeCCCCCHHHH
Confidence 688999999999999999998776654 88999999999999999996 7999766 44 113456678999999
Q ss_pred HHHHH
Q 030165 174 SSTLD 178 (182)
Q Consensus 174 ~~~l~ 178 (182)
.+||+
T Consensus 77 ~~~L~ 81 (81)
T PF05768_consen 77 RAWLE 81 (81)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99985
No 180
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.15 E-value=4.1e-05 Score=53.96 Aligned_cols=92 Identities=22% Similarity=0.353 Sum_probs=65.5
Q ss_pred ChhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH----HHHHcCCCc-ccEEEEE
Q 030165 82 TDSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN----IATKYGIRS-IPTVLFF 155 (182)
Q Consensus 82 ~~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~----l~~~~~I~~-iPTl~~f 155 (182)
+.++|++++.. .+++++|+=.+..|+-..+....|++.....++.+.++.+|+-+.++ ++++|||+. -|-++++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili 85 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI 85 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence 66788886554 36788888889999999999999999999998779999999987764 789999985 6999999
Q ss_pred ECCeEEEEEE-cCCCHHHH
Q 030165 156 KNGEKKESII-GAVPKSTL 173 (182)
Q Consensus 156 ~~G~~v~~~~-G~~~~~~l 173 (182)
+||+.+-.-. +..+.+.|
T Consensus 86 ~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 86 KNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp ETTEEEEEEEGGG-SHHHH
T ss_pred ECCEEEEECccccCCHHhc
Confidence 9999886544 33455544
No 181
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.13 E-value=2.8e-05 Score=69.09 Aligned_cols=99 Identities=15% Similarity=0.262 Sum_probs=79.7
Q ss_pred cCccEEcChhhHHHHHHcCCCc-EEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165 75 VNEVQVVTDSSWENLVISSENP-VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVL 153 (182)
Q Consensus 75 ~~~v~~l~~~~~~~~~~~~~~~-vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~ 153 (182)
.+....++++..+. +.+-+++ -+-.|..+.|++|......+++++...+ ++..-.+|..+.++++++|+|.++|+++
T Consensus 98 ~~~~~~l~~~~~~~-~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~ 175 (515)
T TIGR03140 98 GGHGPKLDEGIIDR-IRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAVF 175 (515)
T ss_pred cCCCCCCCHHHHHH-HHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCEEE
Confidence 34456677776665 4444455 4888999999999999999999998877 5888899999999999999999999997
Q ss_pred EEECCeEEEEEEcCCCHHHHHHHHHH
Q 030165 154 FFKNGEKKESIIGAVPKSTLSSTLDK 179 (182)
Q Consensus 154 ~f~~G~~v~~~~G~~~~~~l~~~l~~ 179 (182)
+ ||+. .+.|..+.+++.+.+.+
T Consensus 176 i--~~~~--~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 176 L--NGEE--FHNGRMDLAELLEKLEE 197 (515)
T ss_pred E--CCcE--EEecCCCHHHHHHHHhh
Confidence 6 7764 46688888888777654
No 182
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.09 E-value=4.9e-05 Score=52.05 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=69.3
Q ss_pred EcCh-hhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECC
Q 030165 80 VVTD-SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNG 158 (182)
Q Consensus 80 ~l~~-~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G 158 (182)
+++. ++++. .+..+.+++|-|+.++++ .....|.++|+.+.+.+.|+.++ +.+++.++++.. |++++|+..
T Consensus 3 ~i~s~~~l~~-~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~ 74 (97)
T cd02981 3 ELTSKEELEK-FLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPF 74 (97)
T ss_pred ecCCHHHHHH-HhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCc
Confidence 3444 34444 567788999999999988 46778899999997778887665 467888888754 899999653
Q ss_pred -eEEEEEEcCCCHHHHHHHHHH
Q 030165 159 -EKKESIIGAVPKSTLSSTLDK 179 (182)
Q Consensus 159 -~~v~~~~G~~~~~~l~~~l~~ 179 (182)
.....+.|..+.+.|.+||..
T Consensus 75 ~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 75 EEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred ccCCccCCCCCCHHHHHHHHHh
Confidence 444557788888999999864
No 183
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.09 E-value=2.1e-05 Score=50.08 Aligned_cols=57 Identities=19% Similarity=0.342 Sum_probs=43.2
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHH----HHHcCCCcccEEEEEECCeEEE
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI----ATKYGIRSIPTVLFFKNGEKKE 162 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l----~~~~~I~~iPTl~~f~~G~~v~ 162 (182)
++.|+++||++|+.....|++.. +.+..+|++.+.+. .+..+..++|+++ .+|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEe
Confidence 56799999999999999998774 67778888876643 4445778899874 4775443
No 184
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.02 E-value=9.4e-05 Score=49.70 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=52.4
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHH---HHcCCCcccEEEEEECCeEEEEEEcCCCHHHHH
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIA---TKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLS 174 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~---~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~ 174 (182)
+..|..+||++|++.+..|++. ++.|-.+|++++++.+ ...|...+|++++ ++. .+.| .+++.|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~G-f~~~~l~ 70 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSG-FRPDMIN 70 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEec-CCHHHHH
Confidence 6678999999999999888652 4888899999877643 3457789999965 442 3444 6788888
Q ss_pred HHHHH
Q 030165 175 STLDK 179 (182)
Q Consensus 175 ~~l~~ 179 (182)
+++..
T Consensus 71 ~~~~~ 75 (81)
T PRK10329 71 RLHPA 75 (81)
T ss_pred HHHHh
Confidence 77654
No 185
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.98 E-value=8.6e-05 Score=48.31 Aligned_cols=66 Identities=20% Similarity=0.320 Sum_probs=47.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH---HHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHH
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN---IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLS 174 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~---l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~ 174 (182)
++.|..+||++|.+.+..|++. ++.+..+|++++.. +....|..++|.++ .||+.+ | ..+++.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~i----g--g~~~l~ 68 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGELI----G--GSDDLE 68 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEEE----e--CHHHHH
Confidence 6779999999999998888753 36677777776543 33446899999984 478643 2 356666
Q ss_pred HHH
Q 030165 175 STL 177 (182)
Q Consensus 175 ~~l 177 (182)
++|
T Consensus 69 ~~l 71 (72)
T cd03029 69 KYF 71 (72)
T ss_pred HHh
Confidence 665
No 186
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.96 E-value=7e-05 Score=48.84 Aligned_cols=55 Identities=16% Similarity=0.387 Sum_probs=41.6
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHH----HHcCCC-cccEEEEEECCeE
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIA----TKYGIR-SIPTVLFFKNGEK 160 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~----~~~~I~-~iPTl~~f~~G~~ 160 (182)
++.|+.+||++|+.....|++. ++.+..+|++++++.. +.+|.. ++|++++ +|+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~ 61 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVH 61 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEE
Confidence 5679999999999999888763 3677788888765543 446777 9998754 7754
No 187
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.94 E-value=0.00011 Score=65.91 Aligned_cols=95 Identities=20% Similarity=0.225 Sum_probs=77.7
Q ss_pred HHHHHHcCCCc-EEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEE-CCeEE-E
Q 030165 86 WENLVISSENP-VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK-NGEKK-E 162 (182)
Q Consensus 86 ~~~~~~~~~~~-vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~-~G~~v-~ 162 (182)
+...+..-.++ .++.|+.+.|..|..+...++++++ +.+++.+...|.+.+.+++++|+|+.+|++.+++ +|+.. .
T Consensus 357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i 435 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGL 435 (555)
T ss_pred HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccce
Confidence 55545455566 5778889899999999999999994 4567999889999999999999999999999995 66433 6
Q ss_pred EEEcCCCHHHHHHHHHHHh
Q 030165 163 SIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 163 ~~~G~~~~~~l~~~l~~~l 181 (182)
++.|...-.+|..+|+.++
T Consensus 436 ~f~g~P~G~Ef~s~i~~i~ 454 (555)
T TIGR03143 436 KFHGVPSGHELNSFILALY 454 (555)
T ss_pred EEEecCccHhHHHHHHHHH
Confidence 8889888888988888765
No 188
>PHA03050 glutaredoxin; Provisional
Probab=97.91 E-value=9e-05 Score=52.58 Aligned_cols=65 Identities=14% Similarity=0.244 Sum_probs=44.1
Q ss_pred HHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC---C----hHHHHHcCCCcccEEEEEECCeEE
Q 030165 90 VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD---S----PNIATKYGIRSIPTVLFFKNGEKK 161 (182)
Q Consensus 90 ~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~---~----~~l~~~~~I~~iPTl~~f~~G~~v 161 (182)
.+.+++ |+.|..+|||+|++....|++..-.++ .+-.+|+++ . ..+.+..|.+++|++++ +|+.+
T Consensus 9 ~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~i 80 (108)
T PHA03050 9 RLANNK--VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSI 80 (108)
T ss_pred HhccCC--EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEE
Confidence 444444 667999999999999998887743221 344455554 2 23566678899999954 78654
No 189
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.88 E-value=6.1e-05 Score=49.82 Aligned_cols=55 Identities=16% Similarity=0.446 Sum_probs=41.2
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHH----HHHcCCCcccEEEEEECCeE
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI----ATKYGIRSIPTVLFFKNGEK 160 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l----~~~~~I~~iPTl~~f~~G~~ 160 (182)
++.|+.+||++|+.....|++. ++.+-.+|++.+++. .+..|..++|++++ +|+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~ 59 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVH 59 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEE
Confidence 4678999999999999999864 366667777776554 34458889999844 7754
No 190
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.85 E-value=6.7e-05 Score=50.36 Aligned_cols=58 Identities=26% Similarity=0.481 Sum_probs=46.1
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC--CC------------------------------hHHHHHcC
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD--DS------------------------------PNIATKYG 145 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d--~~------------------------------~~l~~~~~ 145 (182)
+++|+.+.|++|..+.+.++++.+...+++.+...... .. ..++.++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 46899999999999999999998777777777766542 11 23567899
Q ss_pred CCcccEEEEE
Q 030165 146 IRSIPTVLFF 155 (182)
Q Consensus 146 I~~iPTl~~f 155 (182)
+.++||+++.
T Consensus 81 ~~g~Pt~v~~ 90 (98)
T cd02972 81 VTGTPTFVVN 90 (98)
T ss_pred CCCCCEEEEC
Confidence 9999999885
No 191
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.80 E-value=9e-05 Score=51.70 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=39.2
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH-------HHHHcCCCcccEEEEEECCeEE
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN-------IATKYGIRSIPTVLFFKNGEKK 161 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~-------l~~~~~I~~iPTl~~f~~G~~v 161 (182)
++.|..+||++|+.....|++.. +.+..+|+|+.++ +.+..|.+++|.++ -+|+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf--i~g~~i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF--VGGKLV 72 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE--ECCEEE
Confidence 66799999999999998887652 4555666665432 33345788999984 478543
No 192
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.78 E-value=0.0002 Score=46.71 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=43.3
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH----HHHHcCCCcccEEEEEECCeEE
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN----IATKYGIRSIPTVLFFKNGEKK 161 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~----l~~~~~I~~iPTl~~f~~G~~v 161 (182)
++.|..+||++|++....|++. ++.+..+|++++++ +.+..+-..+|++++ ||+.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~i 62 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLV 62 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 5679999999999999988863 37777888887665 555568889999854 77543
No 193
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.77 E-value=0.00073 Score=48.75 Aligned_cols=101 Identities=19% Similarity=0.287 Sum_probs=72.1
Q ss_pred ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHH-HHh--cCceEEEEEeCC-----CChHHHHHcCC--
Q 030165 77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELA-KEY--AGKVACFKLNTD-----DSPNIATKYGI-- 146 (182)
Q Consensus 77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a-~~~--~~~v~~~~vd~d-----~~~~l~~~~~I-- 146 (182)
....++.-+|++ +...-+.+||.|=.. .|=-.-+..|.+++ +.. .+.+.++.|-+. +|.+|+++|+|
T Consensus 5 G~v~LD~~tFdK-vi~kf~~~LVKFD~a--yPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 5 GCVPLDELTFDK-VIPKFKYVLVKFDVA--YPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TSEEESTTHHHH-HGGGSSEEEEEEEES--S--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred ceeeccceehhh-eeccCceEEEEEecc--CCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 357889999999 556668999999643 23334566788888 443 245888888773 57899999999
Q ss_pred CcccEEEEEE-CCeEEEEE--EcCCCHHHHHHHHHHH
Q 030165 147 RSIPTVLFFK-NGEKKESI--IGAVPKSTLSSTLDKY 180 (182)
Q Consensus 147 ~~iPTl~~f~-~G~~v~~~--~G~~~~~~l~~~l~~~ 180 (182)
+.+|.+.+|. +.+...++ .|..+.+.|..|+.+-
T Consensus 82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 5789999997 55666677 7888999999999763
No 194
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00047 Score=46.18 Aligned_cols=66 Identities=18% Similarity=0.406 Sum_probs=45.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh-----HHHHHc-CCCcccEEEEEECCeEEEEEEcCCCHH
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP-----NIATKY-GIRSIPTVLFFKNGEKKESIIGAVPKS 171 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~-----~l~~~~-~I~~iPTl~~f~~G~~v~~~~G~~~~~ 171 (182)
++.|..+||++|++....|++. .+.+..+++++.. +...+. |.+++|.+++ ||+ .+.|..+.+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~---~igg~~d~~ 71 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGK---HVGGCDDLD 71 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCE---EEeCcccHH
Confidence 5678999999999999888832 3666676766555 344555 7899999877 775 333444555
Q ss_pred HHH
Q 030165 172 TLS 174 (182)
Q Consensus 172 ~l~ 174 (182)
.+.
T Consensus 72 ~~~ 74 (80)
T COG0695 72 ALE 74 (80)
T ss_pred HHH
Confidence 544
No 195
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.54 E-value=0.00058 Score=53.27 Aligned_cols=101 Identities=18% Similarity=0.340 Sum_probs=81.6
Q ss_pred cCccEEcChhhHHHHHHc--CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEE
Q 030165 75 VNEVQVVTDSSWENLVIS--SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTV 152 (182)
Q Consensus 75 ~~~v~~l~~~~~~~~~~~--~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl 152 (182)
.+.|..+++.+|-+.+.. .+..|+|..|...=+-|.-+...|+.++..|+. ++|+++-.... ...|.=...||+
T Consensus 90 fG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~c---IpNYPe~nlPTl 165 (240)
T KOG3170|consen 90 FGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTC---IPNYPESNLPTL 165 (240)
T ss_pred ccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEecccccc---cCCCcccCCCeE
Confidence 578899999998877654 456689999999999999999999999999996 99999865542 335777889999
Q ss_pred EEEECCeEEEEEEcCC-------CHHHHHHHHHH
Q 030165 153 LFFKNGEKKESIIGAV-------PKSTLSSTLDK 179 (182)
Q Consensus 153 ~~f~~G~~v~~~~G~~-------~~~~l~~~l~~ 179 (182)
++|..|.....++|.. +.+++..++-+
T Consensus 166 ~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 166 LVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred EEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 9999999888887643 45666666543
No 196
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.48 E-value=0.0011 Score=45.91 Aligned_cols=58 Identities=24% Similarity=0.346 Sum_probs=40.9
Q ss_pred CcEEEEEE----cCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHH----HHHcCCCcccEEEEEECCeE
Q 030165 95 NPVLVEFW----APWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI----ATKYGIRSIPTVLFFKNGEK 160 (182)
Q Consensus 95 ~~vlV~F~----a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l----~~~~~I~~iPTl~~f~~G~~ 160 (182)
.+|+|+-. ++||++|+.....|++. ++.+..+|+++++++ .+..|-..+|.+++ ||+.
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~~ 77 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGEF 77 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCEE
Confidence 44554433 39999999999888775 266778888776653 34567789999854 7754
No 197
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.44 E-value=0.0014 Score=52.61 Aligned_cols=108 Identities=14% Similarity=0.253 Sum_probs=75.3
Q ss_pred hccCccEEcChhhHHHH--HHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh------------
Q 030165 73 EAVNEVQVVTDSSWENL--VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP------------ 138 (182)
Q Consensus 73 ~~~~~v~~l~~~~~~~~--~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~------------ 138 (182)
.++.++..+++.+...+ ..+.++|.||.|.+-.||+=+.-...|++++++|.+...|+.|.++|..
T Consensus 79 APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~~ 158 (237)
T PF00837_consen 79 APNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNPY 158 (237)
T ss_pred CCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCce
Confidence 34567888888773332 3467999999999999999999999999999999987788877664322
Q ss_pred ------H------HHHH----c-CC---------------Cccc-EEEEEECCeEEEEEE-cC--CCHHHHHHHHHHH
Q 030165 139 ------N------IATK----Y-GI---------------RSIP-TVLFFKNGEKKESII-GA--VPKSTLSSTLDKY 180 (182)
Q Consensus 139 ------~------l~~~----~-~I---------------~~iP-Tl~~f~~G~~v~~~~-G~--~~~~~l~~~l~~~ 180 (182)
. .|+. + +. .++| .+.+++||+.+..-. |. ...+++++||+++
T Consensus 159 ~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~YgA~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 159 EIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYGALPERLYIIQDGKVVYKGGPGPFGYSPEELREWLEKY 236 (237)
T ss_pred eecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhCCCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHHHhc
Confidence 1 1111 1 00 1477 466778998643221 22 3589999999985
No 198
>PRK10638 glutaredoxin 3; Provisional
Probab=97.34 E-value=0.0013 Score=44.02 Aligned_cols=56 Identities=11% Similarity=0.281 Sum_probs=41.5
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH----HHHHcCCCcccEEEEEECCeEE
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN----IATKYGIRSIPTVLFFKNGEKK 161 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~----l~~~~~I~~iPTl~~f~~G~~v 161 (182)
++.|..+||++|+.....|++. .+.+..+|++++++ +.+..|...+|++++ +|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 5678899999999999888864 36666778876654 345568889998844 77543
No 199
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.33 E-value=0.0013 Score=44.82 Aligned_cols=58 Identities=22% Similarity=0.417 Sum_probs=40.6
Q ss_pred CcEEEEEE----cCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHH----HHHcCCCcccEEEEEECCeE
Q 030165 95 NPVLVEFW----APWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI----ATKYGIRSIPTVLFFKNGEK 160 (182)
Q Consensus 95 ~~vlV~F~----a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l----~~~~~I~~iPTl~~f~~G~~ 160 (182)
.+|+|+-. .+||++|+.....|++.. +.+..+|++++.++ .+..|-+++|.+ |.+|+.
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~ 73 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGEL 73 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEE
Confidence 45555433 279999999998887763 66677777766553 455688899997 447864
No 200
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.30 E-value=0.00079 Score=53.07 Aligned_cols=87 Identities=18% Similarity=0.367 Sum_probs=70.4
Q ss_pred CccEEc-ChhhHHHHHHcC--CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEE
Q 030165 76 NEVQVV-TDSSWENLVISS--ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTV 152 (182)
Q Consensus 76 ~~v~~l-~~~~~~~~~~~~--~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl 152 (182)
+.|.++ ++++|.+.+..+ .-.++|+.|-+.-.-|..+...+.=+|.+|+. ++|+++.... -....+|..+++||+
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-vKFckikss~-~gas~~F~~n~lP~L 215 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-VKFCKIKSSN-TGASDRFSLNVLPTL 215 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-eeEEEeeecc-ccchhhhcccCCceE
Confidence 355565 567888866554 23578999999999999999999999999985 9999996543 445788999999999
Q ss_pred EEEECCeEEEEE
Q 030165 153 LFFKNGEKKESI 164 (182)
Q Consensus 153 ~~f~~G~~v~~~ 164 (182)
+||++|+.+.-+
T Consensus 216 liYkgGeLIgNF 227 (273)
T KOG3171|consen 216 LIYKGGELIGNF 227 (273)
T ss_pred EEeeCCchhHHH
Confidence 999999887644
No 201
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.27 E-value=0.0023 Score=48.44 Aligned_cols=65 Identities=26% Similarity=0.341 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECC-eEEEEEEcC-CCHHHHHHHHHHH
Q 030165 112 IAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNG-EKKESIIGA-VPKSTLSSTLDKY 180 (182)
Q Consensus 112 ~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G-~~v~~~~G~-~~~~~l~~~l~~~ 180 (182)
....|.++++.+.+.+.|+.++ +.++++++++.. |++++|+++ +....+.|. .+.++|.+||.+.
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~ 74 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN 74 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh
Confidence 4567899999999889999887 677999999999 999999874 445677786 7999999999864
No 202
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0067 Score=45.81 Aligned_cols=91 Identities=15% Similarity=0.275 Sum_probs=65.5
Q ss_pred HcCCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeC---------------------CCChHHHHHcCCC
Q 030165 91 ISSENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNT---------------------DDSPNIATKYGIR 147 (182)
Q Consensus 91 ~~~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~---------------------d~~~~l~~~~~I~ 147 (182)
.-.+++||++|| ..|.+.|-..+-.|.+...++.. ...++.|.. |.+.++++.||+.
T Consensus 27 d~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~ 106 (157)
T COG1225 27 DLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVW 106 (157)
T ss_pred HhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcc
Confidence 345779999999 78999999999999998888865 467777766 4455688889984
Q ss_pred c------------ccE-EEEEECCeEEEEEEcCC---CHHHHHHHHHHHh
Q 030165 148 S------------IPT-VLFFKNGEKKESIIGAV---PKSTLSSTLDKYV 181 (182)
Q Consensus 148 ~------------iPT-l~~f~~G~~v~~~~G~~---~~~~l~~~l~~~l 181 (182)
. .++ ++|-++|++...+.... ..+++.++|+++.
T Consensus 107 ~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l~ 156 (157)
T COG1225 107 GEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKLA 156 (157)
T ss_pred cccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHhc
Confidence 3 344 44446898888774433 3566777776653
No 203
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.15 E-value=0.001 Score=51.07 Aligned_cols=33 Identities=27% Similarity=0.540 Sum_probs=26.0
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhcCceEEEEE
Q 030165 100 EFWAPWCGPCRMIAPAIEELAKEYAGKVACFKL 132 (182)
Q Consensus 100 ~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~v 132 (182)
+|..|.|+.|-.+.|.+.++..+|+.++.+-.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 699999999999999999999999987655544
No 204
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.99 E-value=0.0083 Score=41.89 Aligned_cols=95 Identities=14% Similarity=0.235 Sum_probs=73.1
Q ss_pred ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC--ChHHHHHcCCC----ccc-EEEE
Q 030165 82 TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD--SPNIATKYGIR----SIP-TVLF 154 (182)
Q Consensus 82 ~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~--~~~l~~~~~I~----~iP-Tl~~ 154 (182)
+-.+|.. ++.....|+|.|..+-=..- .....|.++++...|.-.++.||+.+ ...||.++.|. --| ++..
T Consensus 8 d~KdfKK-LLRTr~NVLvLy~ks~k~a~-~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkH 85 (112)
T cd03067 8 DHKDFKK-LLRTRNNVLVLYSKSAKSAE-ALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKH 85 (112)
T ss_pred chHHHHH-HHhhcCcEEEEEecchhhHH-HHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhc
Confidence 4467877 55667788888887643332 33447889999999999999999987 66799999998 444 5778
Q ss_pred EECCeEEEEEEcCCCHHHHHHHHH
Q 030165 155 FKNGEKKESIIGAVPKSTLSSTLD 178 (182)
Q Consensus 155 f~~G~~v~~~~G~~~~~~l~~~l~ 178 (182)
|+||.--..+...++...+..|+.
T Consensus 86 YKdG~fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 86 YKDGDFHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred ccCCCccccccchhhHHHHHHHhh
Confidence 899988777777788888888775
No 205
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0045 Score=43.59 Aligned_cols=58 Identities=21% Similarity=0.371 Sum_probs=41.4
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh-HH----HHHcCCCcccEEEEEECCeEE
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP-NI----ATKYGIRSIPTVLFFKNGEKK 161 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~-~l----~~~~~I~~iPTl~~f~~G~~v 161 (182)
+|.|..+||++|+.+...|.+ +.....++.+|.+++. ++ .+--|-+.+|.+++ +|+-+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~i 78 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFI 78 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEE
Confidence 455999999999998877777 5555677777776544 32 22235678998866 88665
No 206
>PRK10824 glutaredoxin-4; Provisional
Probab=96.96 E-value=0.0035 Score=44.95 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=35.9
Q ss_pred CCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHH----HHHcCCCcccEEEEEECCeEEE
Q 030165 104 PWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI----ATKYGIRSIPTVLFFKNGEKKE 162 (182)
Q Consensus 104 ~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l----~~~~~I~~iPTl~~f~~G~~v~ 162 (182)
|||++|+.....|+++. +.+..+|++++.++ .+.-|-+.+|.+++ ||+-++
T Consensus 28 p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~IG 82 (115)
T PRK10824 28 PSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELVG 82 (115)
T ss_pred CCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEEc
Confidence 69999999999888763 44555677666553 33346778888766 886553
No 207
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0045 Score=56.22 Aligned_cols=83 Identities=16% Similarity=0.323 Sum_probs=67.5
Q ss_pred EEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHH-H--HHHHHHhcCceEEEEEeCCCChHHHHHcC--------CC
Q 030165 79 QVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPA-I--EELAKEYAGKVACFKLNTDDSPNIATKYG--------IR 147 (182)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~-l--~~~a~~~~~~v~~~~vd~d~~~~l~~~~~--------I~ 147 (182)
..-..+.|.+ +...++|++|-...+||.-|+.|+.. | +++++-++..+.-+|||-++-+++-+.|. --
T Consensus 29 ~pW~~eAf~~-A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~G 107 (667)
T COG1331 29 YPWGEEAFAK-AKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQG 107 (667)
T ss_pred cccCHHHHHH-HHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCC
Confidence 4457788887 77899999999999999999999875 4 67888888889999999999998877764 55
Q ss_pred cccEEEEE-ECCeEEE
Q 030165 148 SIPTVLFF-KNGEKKE 162 (182)
Q Consensus 148 ~iPTl~~f-~~G~~v~ 162 (182)
++|-.+|. .||+...
T Consensus 108 GWPLtVfLTPd~kPFf 123 (667)
T COG1331 108 GWPLTVFLTPDGKPFF 123 (667)
T ss_pred CCceeEEECCCCceee
Confidence 89954444 7887653
No 208
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=96.86 E-value=0.018 Score=43.88 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=29.3
Q ss_pred HHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHH
Q 030165 140 IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178 (182)
Q Consensus 140 l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~ 178 (182)
.+.++||.++||+++ ||+ ..+.|..+.+.|.+.|+
T Consensus 159 ~a~~~gv~GvP~~vv--~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 159 EARQLGVFGVPTFVV--NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHTTCSSSSEEEE--TTT--EEEESCSSHHHHHHHH-
T ss_pred HHHHcCCcccCEEEE--CCE--EEEECCCCHHHHHHHhC
Confidence 456689999999999 887 67889999999988773
No 209
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=96.63 E-value=0.022 Score=42.69 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=48.9
Q ss_pred CCcEEEEEE-cCCChhhhhh-hHHHHHHHHHhcC-ce-EEEEEeCC-----------------------CChHHHHHcCC
Q 030165 94 ENPVLVEFW-APWCGPCRMI-APAIEELAKEYAG-KV-ACFKLNTD-----------------------DSPNIATKYGI 146 (182)
Q Consensus 94 ~~~vlV~F~-a~wC~~C~~~-~p~l~~~a~~~~~-~v-~~~~vd~d-----------------------~~~~l~~~~~I 146 (182)
++++|+.|| +.||+.|... .+.|.+..+++.. .+ .++.+..| ...++++.||+
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv 108 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLADGNGEFTKALGL 108 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcCC
Confidence 445555554 8999999998 9999988888753 23 36655543 33457777887
Q ss_pred C------c-----ccEEEEEECCeEEEEEEcCC
Q 030165 147 R------S-----IPTVLFFKNGEKKESIIGAV 168 (182)
Q Consensus 147 ~------~-----iPTl~~f~~G~~v~~~~G~~ 168 (182)
. + ....+++++|++...+....
T Consensus 109 ~~~~~~~~~~~~~~R~~fiId~g~I~~~~~~~~ 141 (155)
T cd03013 109 TLDLSAAGGGIRSKRYALIVDDGKVKYLFVEED 141 (155)
T ss_pred CccccccCCcceeeeEEEEECCCEEEEEEEecC
Confidence 3 1 24456666787776555433
No 210
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.02 Score=45.71 Aligned_cols=38 Identities=24% Similarity=0.479 Sum_probs=31.4
Q ss_pred HHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 139 NIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 139 ~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
.++.++||.++||+++ +|+ .+.|..+.+++.+.|+..+
T Consensus 206 ~~a~~~gv~gTPt~~v--~~~---~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 206 KLAQQLGVNGTPTFIV--NGK---LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred HHHHhcCCCcCCeEEE--CCe---eecCCCCHHHHHHHHHHhh
Confidence 3667799999999987 555 7788889999999998764
No 211
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.45 E-value=0.012 Score=51.24 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=41.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHH---HH---------cCCCcccEEEEEECCeE
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIA---TK---------YGIRSIPTVLFFKNGEK 160 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~---~~---------~~I~~iPTl~~f~~G~~ 160 (182)
|+.|..+||++|++....|++. ++.+-.+|+++.+... ++ .|.+++|++++ +|+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~ 70 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVH 70 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEE
Confidence 6789999999999998888774 3788888888766422 23 37789999966 6753
No 212
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.44 E-value=0.075 Score=36.83 Aligned_cols=94 Identities=16% Similarity=0.266 Sum_probs=62.5
Q ss_pred EEc-ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC
Q 030165 79 QVV-TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN 157 (182)
Q Consensus 79 ~~l-~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~ 157 (182)
..+ +.++++..+...+..++|-|+..-=. .....|.+++..+.....|+... +.+++..+++. .|+++++++
T Consensus 3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~~~ 75 (102)
T cd03066 3 EIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFYEP 75 (102)
T ss_pred eEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEeCC
Confidence 445 44557774431566666666655333 35667889999986667875433 44677788775 688999965
Q ss_pred -CeEEEEE-EcCCCHHHHHHHHHH
Q 030165 158 -GEKKESI-IGAVPKSTLSSTLDK 179 (182)
Q Consensus 158 -G~~v~~~-~G~~~~~~l~~~l~~ 179 (182)
......+ .|..+.+.|.+||..
T Consensus 76 ~~e~~~~y~~g~~~~~~l~~fi~~ 99 (102)
T cd03066 76 FMEEPVTIPDKPYSEEELVDFVEE 99 (102)
T ss_pred CCCCCcccCCCCCCHHHHHHHHHH
Confidence 3333445 677899999999975
No 213
>PTZ00062 glutaredoxin; Provisional
Probab=96.43 E-value=0.021 Score=45.06 Aligned_cols=50 Identities=18% Similarity=0.311 Sum_probs=36.4
Q ss_pred CCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHH----HHHcCCCcccEEEEEECCeEE
Q 030165 104 PWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI----ATKYGIRSIPTVLFFKNGEKK 161 (182)
Q Consensus 104 ~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l----~~~~~I~~iPTl~~f~~G~~v 161 (182)
|||++|++....|++. ++.+..+|+++++++ .+..|-..+|.+.+ ||+.+
T Consensus 126 p~C~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~I 179 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGELI 179 (204)
T ss_pred CCChhHHHHHHHHHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 7999999998888864 367777888776654 33346778888765 78654
No 214
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.00 E-value=0.13 Score=35.80 Aligned_cols=90 Identities=14% Similarity=0.242 Sum_probs=60.4
Q ss_pred ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEE-----
Q 030165 82 TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK----- 156 (182)
Q Consensus 82 ~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~----- 156 (182)
+.++++. .+..++.++|-|+..-=. .....|.+++..+.....|+... ...++..+++ .|++++|+
T Consensus 7 s~~~l~~-f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~~~ 77 (104)
T cd03069 7 TEAEFEK-FLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFRPPRLS 77 (104)
T ss_pred CHHHHHH-HhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEechhhh
Confidence 4455666 345566677767655333 36678889999987667876443 3567888998 68888882
Q ss_pred -CC-eEEEEEEcCCCHHHHHHHHHHH
Q 030165 157 -NG-EKKESIIGAVPKSTLSSTLDKY 180 (182)
Q Consensus 157 -~G-~~v~~~~G~~~~~~l~~~l~~~ 180 (182)
+- .....+.|..+.+.|.+||...
T Consensus 78 ~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 78 NKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred cccCcccccccCcCCHHHHHHHHHhh
Confidence 11 1123467888899999999753
No 215
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=95.84 E-value=0.0036 Score=51.88 Aligned_cols=86 Identities=22% Similarity=0.439 Sum_probs=66.8
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEE-eCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHH
Q 030165 94 ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKL-NTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKST 172 (182)
Q Consensus 94 ~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~v-d~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~ 172 (182)
..+|-+.||+.||+.-+.++|.++-....+.. +....+ +...-+++..+||+.+.|++++. +-.-..++-|..+...
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~~ps~~~~-n~t~~~~~~~~r~l~s 153 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHSEPSNLML-NQTCPASYRGERDLAS 153 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhccccccCCcceee-ccccchhhcccccHHH
Confidence 56899999999999999999999888888773 332222 22334668899999999999887 4445567778888888
Q ss_pred HHHHHHHHh
Q 030165 173 LSSTLDKYV 181 (182)
Q Consensus 173 l~~~l~~~l 181 (182)
+.+++.+++
T Consensus 154 Lv~fy~~i~ 162 (319)
T KOG2640|consen 154 LVNFYTEIT 162 (319)
T ss_pred HHHHHHhhc
Confidence 998887764
No 216
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=95.33 E-value=0.52 Score=32.44 Aligned_cols=84 Identities=20% Similarity=0.187 Sum_probs=57.7
Q ss_pred hHHHHHHcCCCcE-EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeE-EE
Q 030165 85 SWENLVISSENPV-LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK-KE 162 (182)
Q Consensus 85 ~~~~~~~~~~~~v-lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~-v~ 162 (182)
++......-.++| ++.|..+. ..|..+...++++++..+ ++.+-..+.+. ..|++.+..+|+. -.
T Consensus 9 qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd-kI~~~~~~~~~-----------~~P~~~i~~~~~~~gI 75 (94)
T cd02974 9 QLKAYLERLENPVELVASLDDS-EKSAELLELLEEIASLSD-KITLEEDNDDE-----------RKPSFSINRPGEDTGI 75 (94)
T ss_pred HHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC-ceEEEEecCCC-----------CCCEEEEecCCCcccE
Confidence 4444444455666 55555555 999999999999987754 57665444322 4799999977743 25
Q ss_pred EEEcCCCHHHHHHHHHHHh
Q 030165 163 SIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 163 ~~~G~~~~~~l~~~l~~~l 181 (182)
++.|...-.+|..+|..++
T Consensus 76 rF~GiP~GhEf~Slilai~ 94 (94)
T cd02974 76 RFAGIPMGHEFTSLVLALL 94 (94)
T ss_pred EEEecCCchhHHHHHHHhC
Confidence 8889888888888887653
No 217
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=95.32 E-value=0.063 Score=39.32 Aligned_cols=46 Identities=15% Similarity=0.331 Sum_probs=36.0
Q ss_pred eCCCChHHHHHcCCCcccEEEEEECCe-----------EEEEEEcCCCHHHHHHHHH
Q 030165 133 NTDDSPNIATKYGIRSIPTVLFFKNGE-----------KKESIIGAVPKSTLSSTLD 178 (182)
Q Consensus 133 d~d~~~~l~~~~~I~~iPTl~~f~~G~-----------~v~~~~G~~~~~~l~~~l~ 178 (182)
++.-++.++++|+|+.+|++++.+++. ..+...|..+.+.-.+.+.
T Consensus 56 ~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 56 GVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred cEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 334468999999999999999998774 4678888888766665554
No 218
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.24 Score=37.29 Aligned_cols=103 Identities=16% Similarity=0.240 Sum_probs=66.6
Q ss_pred cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCC--------ChHH---H-HHc
Q 030165 78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDD--------SPNI---A-TKY 144 (182)
Q Consensus 78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~--------~~~l---~-~~~ 144 (182)
+..++++.+.- ..-.++.+||.=.|+-||.--+.. .|+.+.++|.++ +.++..-+++ +.++ | ..|
T Consensus 10 ~~~~~G~~~~l-~~~~GkVlLIVNtASkCGfTpQYe-gLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~Y 87 (162)
T COG0386 10 VKDIDGEPVSL-SDYKGKVLLIVNTASKCGFTPQYE-GLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNY 87 (162)
T ss_pred eeccCCCCccH-HHhCCcEEEEEEcccccCCcHhHH-HHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhcc
Confidence 45555554443 334689999999999999765444 466777777653 4444443321 1111 1 223
Q ss_pred CCC------------------------------------cccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165 145 GIR------------------------------------SIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182 (182)
Q Consensus 145 ~I~------------------------------------~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~ 182 (182)
||+ .+=-+++-++|++++|+.-...++++...|+++|+
T Consensus 88 gVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 88 GVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred CceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 332 12235566899999999999999999999999885
No 219
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=95.17 E-value=0.11 Score=37.01 Aligned_cols=61 Identities=16% Similarity=0.349 Sum_probs=40.6
Q ss_pred hhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC------------CeEEEEEEcCCCHHHH
Q 030165 111 MIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN------------GEKKESIIGAVPKSTL 173 (182)
Q Consensus 111 ~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~------------G~~v~~~~G~~~~~~l 173 (182)
.+.+..+.+.+.....-.. .++.-++.++++|+|+.+||+++.++ .+..+...|..+.+.-
T Consensus 36 ~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~~~~~~~~~~~~~~~~~~~~~Gdvsl~~a 108 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKDRVCVCLSCGCCSPEDYDVVYGDVSLDYA 108 (113)
T ss_pred CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcCcccccccCCcCCCCcceEEEccccHHHH
Confidence 5666666666555432111 34445789999999999999999977 1344667777765443
No 220
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.14 E-value=0.13 Score=38.40 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=39.7
Q ss_pred EEEEEcC------CChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH----HHHHcCC----CcccEEEEEECCeEE
Q 030165 98 LVEFWAP------WCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN----IATKYGI----RSIPTVLFFKNGEKK 161 (182)
Q Consensus 98 lV~F~a~------wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~----l~~~~~I----~~iPTl~~f~~G~~v 161 (182)
||.|+++ +|++|+..+.+|+.+ .+.+..+|++.+.+ +.+.++- ..+|.+++ +|+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~I 71 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYL 71 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEE
Confidence 3456666 999999999888865 37788888877654 4444554 67888765 77543
No 221
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=95.03 E-value=0.11 Score=34.08 Aligned_cols=59 Identities=17% Similarity=0.185 Sum_probs=47.0
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHHHh-cCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165 97 VLVEFWAPWCGPCRMIAPAIEELAKEY-AGKVACFKLNTDDSPNIATKYGIRSIPTVLFF 155 (182)
Q Consensus 97 vlV~F~a~wC~~C~~~~p~l~~~a~~~-~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f 155 (182)
.+..|-+..-+..+.....+.++.+++ ++...+-.+|+.+++++++.++|-++||++=.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 455666666677777777777777665 56688889999999999999999999997654
No 222
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=94.89 E-value=1.1 Score=33.07 Aligned_cols=91 Identities=9% Similarity=0.104 Sum_probs=66.1
Q ss_pred HcCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCCCh------------------HHHHHcCCCcc
Q 030165 91 ISSENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDDSP------------------NIATKYGIRSI 149 (182)
Q Consensus 91 ~~~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~~~------------------~l~~~~~I~~i 149 (182)
.++.|+.+|+-..+.-..+..+-..+ +++.+-+..++.++..|+.... ..++.++...+
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~f 97 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQL 97 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCC
Confidence 45689999999998875554443332 4445555567888888876643 24566889999
Q ss_pred cEEEEEE-CC---eEEEEEEcCCCHHHHHHHHHHHh
Q 030165 150 PTVLFFK-NG---EKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 150 PTl~~f~-~G---~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
|.+.++- .. .++.++.|..+++++...|...+
T Consensus 98 P~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 98 PAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred CeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 9988883 22 67789999999999998887655
No 223
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.84 E-value=0.062 Score=42.90 Aligned_cols=39 Identities=33% Similarity=0.649 Sum_probs=33.6
Q ss_pred HHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165 140 IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182 (182)
Q Consensus 140 l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~ 182 (182)
.++++||+++|||+| +|+ ..+.|+.+.+.|.+.|+++++
T Consensus 176 ~A~e~gI~gVP~fv~--d~~--~~V~Gaq~~~v~~~al~~~~~ 214 (225)
T COG2761 176 AAQEMGIRGVPTFVF--DGK--YAVSGAQPYDVLEDALRQLLA 214 (225)
T ss_pred HHHHCCCccCceEEE--cCc--EeecCCCCHHHHHHHHHHHHh
Confidence 678899999999999 554 467899999999999998863
No 224
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.79 E-value=0.33 Score=43.28 Aligned_cols=86 Identities=14% Similarity=0.098 Sum_probs=62.4
Q ss_pred hhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEE-E
Q 030165 84 SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKK-E 162 (182)
Q Consensus 84 ~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v-~ 162 (182)
+++..++..-.++|-+.++.+.|..|..+...++++++..+ ++.+-..+.+ ...|++.+..+|+.. .
T Consensus 8 ~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i 75 (517)
T PRK15317 8 TQLKQYLELLERPIELVASLDDSEKSAELKELLEEIASLSD-KITVEEDSLD-----------VRKPSFSITRPGEDTGV 75 (517)
T ss_pred HHHHHHHHhCCCCEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEccCC-----------CCCCEEEEEcCCccceE
Confidence 34555555567777666666689999999999999997764 5766443321 348999999877553 5
Q ss_pred EEEcCCCHHHHHHHHHHHh
Q 030165 163 SIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 163 ~~~G~~~~~~l~~~l~~~l 181 (182)
++.|...-.+|..+|+.++
T Consensus 76 ~f~g~P~g~Ef~s~i~~i~ 94 (517)
T PRK15317 76 RFAGIPMGHEFTSLVLALL 94 (517)
T ss_pred EEEecCccHHHHHHHHHHH
Confidence 8889888888998888765
No 225
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=94.24 E-value=0.6 Score=34.57 Aligned_cols=73 Identities=26% Similarity=0.417 Sum_probs=54.7
Q ss_pred cEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCC----cccEEEEEECCeEEEEEEcCCCHH
Q 030165 96 PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIR----SIPTVLFFKNGEKKESIIGAVPKS 171 (182)
Q Consensus 96 ~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~----~iPTl~~f~~G~~v~~~~G~~~~~ 171 (182)
.-++.|+.|.||=|......++. ..+.+-.+..++-..+-++|||. +=-|.++ ||+ .+.|..+.+
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~------~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy---~vEGHVPa~ 94 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA------NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGY---YVEGHVPAE 94 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh------CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCE---EEeccCCHH
Confidence 44778999999999887766652 23666677778888888889986 4456655 785 456889999
Q ss_pred HHHHHHHH
Q 030165 172 TLSSTLDK 179 (182)
Q Consensus 172 ~l~~~l~~ 179 (182)
.+..+++.
T Consensus 95 aI~~ll~~ 102 (149)
T COG3019 95 AIARLLAE 102 (149)
T ss_pred HHHHHHhC
Confidence 99888764
No 226
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.07 E-value=0.64 Score=41.44 Aligned_cols=87 Identities=16% Similarity=0.197 Sum_probs=62.1
Q ss_pred hhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeE-EE
Q 030165 84 SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK-KE 162 (182)
Q Consensus 84 ~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~-v~ 162 (182)
+++...+.+-.++|-+.++.+.|..|..+...++++++..+ ++.+...+.+. ...|++.++++|+. -.
T Consensus 8 ~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i 76 (515)
T TIGR03140 8 AQLKSYLASLENPVTLVLSAGSHEKSKELLELLDEIASLSD-KISLTQNTADT----------LRKPSFTILRDGADTGI 76 (515)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCchhHHHHHHHHHHHHhCC-CeEEEEecCCc----------CCCCeEEEecCCcccce
Confidence 34455455556777565555579999999999999987764 57765444332 35699999888763 35
Q ss_pred EEEcCCCHHHHHHHHHHHh
Q 030165 163 SIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 163 ~~~G~~~~~~l~~~l~~~l 181 (182)
++.|...-.+|..+|+.++
T Consensus 77 ~f~g~P~g~Ef~s~i~~i~ 95 (515)
T TIGR03140 77 RFAGIPGGHEFTSLVLAIL 95 (515)
T ss_pred EEEecCCcHHHHHHHHHHH
Confidence 8889888888888888765
No 227
>PHA03075 glutaredoxin-like protein; Provisional
Probab=93.76 E-value=0.83 Score=32.71 Aligned_cols=30 Identities=37% Similarity=0.720 Sum_probs=26.2
Q ss_pred CcEEEEEEcCCChhhhhhhHHHHHHHHHhc
Q 030165 95 NPVLVEFWAPWCGPCRMIAPAIEELAKEYA 124 (182)
Q Consensus 95 ~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~ 124 (182)
|.+++.|..|.|+-|+.....++++..+|+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 578999999999999999999987777664
No 228
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=93.38 E-value=3.2 Score=33.63 Aligned_cols=72 Identities=21% Similarity=0.357 Sum_probs=47.0
Q ss_pred CccEEcChhhHHHHHHcCCCcEEEEEEcCC------ChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHH----cC
Q 030165 76 NEVQVVTDSSWENLVISSENPVLVEFWAPW------CGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATK----YG 145 (182)
Q Consensus 76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~w------C~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~----~~ 145 (182)
+..-.+++..-+- +..-+++|-|.+|.+- =..=+.+...|+++++.-++++.+-.+|.+.+++.+++ ||
T Consensus 7 ~k~ysLS~~T~~~-L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~G 85 (271)
T PF09822_consen 7 NKRYSLSDQTKKV-LKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYG 85 (271)
T ss_pred CCCccCCHHHHHH-HHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcC
Confidence 3445566666554 4455678877777654 33334444555666655566899999999887776655 88
Q ss_pred CCc
Q 030165 146 IRS 148 (182)
Q Consensus 146 I~~ 148 (182)
|..
T Consensus 86 i~~ 88 (271)
T PF09822_consen 86 IQP 88 (271)
T ss_pred CCc
Confidence 886
No 229
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=92.54 E-value=0.73 Score=31.34 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=56.7
Q ss_pred CcEEEEEEcCCChhhhhhhHHHHHHHHH-hcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCC
Q 030165 95 NPVLVEFWAPWCGPCRMIAPAIEELAKE-YAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVP 169 (182)
Q Consensus 95 ~~vlV~F~a~wC~~C~~~~p~l~~~a~~-~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~ 169 (182)
..++=.|.+..-+..+..-..+.++.+. +.+...+-.+|+.+++++++.++|-++||++=.. -..+.+++|.++
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~-P~P~rriiGdls 77 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKIL-PPPVRKIIGDLS 77 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcC-CCCcceeecccc
Confidence 3456667788888888877778777665 4566777788999999999999999999976553 335567888764
No 230
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=92.38 E-value=2.2 Score=33.59 Aligned_cols=104 Identities=16% Similarity=0.235 Sum_probs=67.2
Q ss_pred cEEcChhhHHHHHHcCCCcEEEEEEcCCCh-hhhhhhHHHHHHHHHhc----CceEEEEEeCCCCh--------------
Q 030165 78 VQVVTDSSWENLVISSENPVLVEFWAPWCG-PCRMIAPAIEELAKEYA----GKVACFKLNTDDSP-------------- 138 (182)
Q Consensus 78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~-~C~~~~p~l~~~a~~~~----~~v~~~~vd~d~~~-------------- 138 (182)
++.-+++.+.. ....+++++|+|.=..|+ -|-.....+.++.+++. .+++++.|.+|.+.
T Consensus 52 l~d~~G~~~~~-~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~ 130 (207)
T COG1999 52 LTDQDGKPFTL-KDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNF 130 (207)
T ss_pred eecCCCCEeec-cccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccC
Confidence 44445555555 223688999999866665 58888888877777765 23444444443221
Q ss_pred ---------------HHHHHcCCCc---------------ccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165 139 ---------------NIATKYGIRS---------------IPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE 182 (182)
Q Consensus 139 ---------------~l~~~~~I~~---------------iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~ 182 (182)
++++.|+|.. --.++++ .+|+....+.+..+++++.+.|+++++
T Consensus 131 ~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 131 DPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred CCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 2455555542 2224444 489998888888889999999988763
No 231
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=92.27 E-value=1.5 Score=38.16 Aligned_cols=90 Identities=16% Similarity=0.252 Sum_probs=63.4
Q ss_pred cCCCcEEEEEEcCCChhhhhhhH--HHHHHH-HHhcCceEEEEEeCC--CChHHHHHcCCCcccEEEEE-ECCeEEEEEE
Q 030165 92 SSENPVLVEFWAPWCGPCRMIAP--AIEELA-KEYAGKVACFKLNTD--DSPNIATKYGIRSIPTVLFF-KNGEKKESII 165 (182)
Q Consensus 92 ~~~~~vlV~F~a~wC~~C~~~~p--~l~~~a-~~~~~~v~~~~vd~d--~~~~l~~~~~I~~iPTl~~f-~~G~~v~~~~ 165 (182)
+.++.++|.|.+-.-....+|.. ..+... +.+...+..++|+.. ...++..-|.+-.+|.++++ ++|..+....
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevit 95 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVIT 95 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEee
Confidence 45667777777776777666663 223322 333333444555543 34567888999999999888 7999999999
Q ss_pred cCCCHHHHHHHHHHHh
Q 030165 166 GAVPKSTLSSTLDKYV 181 (182)
Q Consensus 166 G~~~~~~l~~~l~~~l 181 (182)
|....++|..-|++.+
T Consensus 96 g~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 96 GFVTADELASSIEKVW 111 (506)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999998888753
No 232
>PRK09301 circadian clock protein KaiB; Provisional
Probab=91.86 E-value=1.1 Score=31.37 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=58.7
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHH-hcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCC
Q 030165 94 ENPVLVEFWAPWCGPCRMIAPAIEELAKE-YAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVP 169 (182)
Q Consensus 94 ~~~vlV~F~a~wC~~C~~~~p~l~~~a~~-~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~ 169 (182)
...++=.|.+..-+..+.....+.++.+. +.+...+-.+|+.+++++++.++|-++||++=.. -..+.+++|.++
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~-P~P~rriiGDls 80 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKIL-PPPVRKIIGDLS 80 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcC-CCCcceeecccc
Confidence 45677788888888888888888887665 4566777788999999999999999999976553 335667888764
No 233
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=91.74 E-value=0.18 Score=38.71 Aligned_cols=39 Identities=28% Similarity=0.513 Sum_probs=30.8
Q ss_pred CChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHH
Q 030165 136 DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178 (182)
Q Consensus 136 ~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~ 178 (182)
++.+.+.++||.++||+++ ||+. .+.|..+.+.|.+.|+
T Consensus 163 ~~~~~a~~~gv~G~Pt~vv--~g~~--~~~G~~~~~~~~~~i~ 201 (201)
T cd03024 163 ADEARARQLGISGVPFFVF--NGKY--AVSGAQPPEVFLQALR 201 (201)
T ss_pred HHHHHHHHCCCCcCCEEEE--CCeE--eecCCCCHHHHHHHhC
Confidence 3456778899999999988 7753 4789999999887763
No 234
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=90.54 E-value=4.4 Score=28.27 Aligned_cols=94 Identities=7% Similarity=0.089 Sum_probs=57.6
Q ss_pred EEc-ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE--
Q 030165 79 QVV-TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF-- 155 (182)
Q Consensus 79 ~~l-~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f-- 155 (182)
.++ +.++++..+...+..++|-|+..-=+ .....|.++|..+.....|+... +..+..++++.. |.+++|
T Consensus 3 ~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~~-~~vvl~rp 75 (107)
T cd03068 3 KQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVSP-GQLVVFQP 75 (107)
T ss_pred eEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCCC-CceEEECc
Confidence 344 45567764444425666666655333 35667889999997778886443 347788888864 566666
Q ss_pred -----ECCeEEEEEEcC-CCHHH-HHHHHHH
Q 030165 156 -----KNGEKKESIIGA-VPKST-LSSTLDK 179 (182)
Q Consensus 156 -----~~G~~v~~~~G~-~~~~~-l~~~l~~ 179 (182)
+=......+.|. .+.++ |..||..
T Consensus 76 ~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 76 EKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred HHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 211223344666 56545 9999864
No 235
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=89.55 E-value=3 Score=26.68 Aligned_cols=71 Identities=15% Similarity=0.267 Sum_probs=42.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC--ChHHHHHcCCCcccEEEEEE--CCeEEEEEEcCCCHHHH
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD--SPNIATKYGIRSIPTVLFFK--NGEKKESIIGAVPKSTL 173 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~--~~~l~~~~~I~~iPTl~~f~--~G~~v~~~~G~~~~~~l 173 (182)
+..|+.++|++|++.+-.+.+.. +.+-.++.+. ..++ ..-+-..+|+++.-. +|+. ......+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~g------i~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~------l~eS~~I 68 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHG------IPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQ------LVDSSVI 68 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCC------CceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccE------EEcHHHH
Confidence 45678899999999986666553 3333334332 2233 334567899987542 2321 2345667
Q ss_pred HHHHHHHh
Q 030165 174 SSTLDKYV 181 (182)
Q Consensus 174 ~~~l~~~l 181 (182)
.++|++.|
T Consensus 69 ~~yL~~~~ 76 (77)
T cd03040 69 ISTLKTYL 76 (77)
T ss_pred HHHHHHHc
Confidence 78887765
No 236
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.40 E-value=1.3 Score=29.35 Aligned_cols=57 Identities=23% Similarity=0.313 Sum_probs=37.4
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC--------------hH--HHHHcCCCcccEEEEEECCeEEE
Q 030165 99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS--------------PN--IATKYGIRSIPTVLFFKNGEKKE 162 (182)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~--------------~~--l~~~~~I~~iPTl~~f~~G~~v~ 162 (182)
+.|++..||.|..+...|+++. +.+-.|++... ++ -++..|--+||.++. .||+++.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN------VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC------CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEEE
Confidence 5699999999988777776653 33344554322 11 245567789999865 4776654
No 237
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=89.19 E-value=0.39 Score=36.46 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=27.9
Q ss_pred hHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHH
Q 030165 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTL 177 (182)
Q Consensus 138 ~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l 177 (182)
.+.+.++||.++||+++ ||+ .+.|....+.+.+.|
T Consensus 157 ~~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 157 TEEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence 35678899999999988 775 557888888777765
No 238
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=88.90 E-value=6.6 Score=27.90 Aligned_cols=101 Identities=11% Similarity=0.132 Sum_probs=69.7
Q ss_pred cChhhHHHHHH-cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCCCChHHHH----HcCCC-cccEE
Q 030165 81 VTDSSWENLVI-SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTDDSPNIAT----KYGIR-SIPTV 152 (182)
Q Consensus 81 l~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~--~v~~~~vd~d~~~~l~~----~~~I~-~iPTl 152 (182)
++.+++.+.=. ..+...+|-|--+--+.-.+|.++++++|+++.. ++.|+.||-|+-+-+.. -|+|. .=|-+
T Consensus 6 l~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqI 85 (120)
T cd03074 6 LKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQI 85 (120)
T ss_pred ccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCce
Confidence 44444444222 3457788889988899999999999999999864 59999999999887653 36665 23766
Q ss_pred EEEE--CCeEE-EEEE---cCCCHHHHHHHHHHHh
Q 030165 153 LFFK--NGEKK-ESII---GAVPKSTLSSTLDKYV 181 (182)
Q Consensus 153 ~~f~--~G~~v-~~~~---G~~~~~~l~~~l~~~l 181 (182)
=++. +...+ -... ...+.++|.+||+..|
T Consensus 86 GVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 86 GVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred eeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence 6652 22211 2222 2357899999999865
No 239
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.84 E-value=0.84 Score=35.78 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=35.1
Q ss_pred HHHHHcCCCcccEEEEEECCeEEEEEEc--CCCHHHHHHHHHHHh
Q 030165 139 NIATKYGIRSIPTVLFFKNGEKKESIIG--AVPKSTLSSTLDKYV 181 (182)
Q Consensus 139 ~l~~~~~I~~iPTl~~f~~G~~v~~~~G--~~~~~~l~~~l~~~l 181 (182)
.++++.|+.++||+++-+||+..---.| ..+++.+..++.+.+
T Consensus 165 ~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 165 RLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 4778999999999999999987666566 457788888887765
No 240
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=88.79 E-value=0.89 Score=28.86 Aligned_cols=57 Identities=11% Similarity=0.120 Sum_probs=37.5
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC-ChHHHHHcCCCcccEEEEEECCeE
Q 030165 99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD-SPNIATKYGIRSIPTVLFFKNGEK 160 (182)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~-~~~l~~~~~I~~iPTl~~f~~G~~ 160 (182)
+.|+.+||++|++..-.+++..- .+.+..+|... .+++.+......+|++.. .||..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl----~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI----TVELREVELKNKPAEMLAASPKGTVPVLVL-GNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC----CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcE
Confidence 45789999999988777665532 24555666543 345666667789999954 24543
No 241
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=88.73 E-value=0.54 Score=32.59 Aligned_cols=75 Identities=11% Similarity=0.143 Sum_probs=41.1
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh----HHHHHcCCCcccEEEEE-ECCeEEEEE----EcCCC
Q 030165 99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP----NIATKYGIRSIPTVLFF-KNGEKKESI----IGAVP 169 (182)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~----~l~~~~~I~~iPTl~~f-~~G~~v~~~----~G~~~ 169 (182)
..|+.++|+.|++....|++. ++.+-.+|+.+++ ++.+-.+-.+.+.--++ ++|...... ...++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls 75 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELS 75 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCC
Confidence 568899999999998777764 3556666665432 33333333333332233 233221111 23456
Q ss_pred HHHHHHHHHH
Q 030165 170 KSTLSSTLDK 179 (182)
Q Consensus 170 ~~~l~~~l~~ 179 (182)
.+++.++|.+
T Consensus 76 ~~e~~~~l~~ 85 (105)
T cd02977 76 DEEALELMAE 85 (105)
T ss_pred HHHHHHHHHh
Confidence 6666666643
No 242
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=88.51 E-value=0.92 Score=35.70 Aligned_cols=41 Identities=24% Similarity=0.516 Sum_probs=31.9
Q ss_pred ChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHH
Q 030165 137 SPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178 (182)
Q Consensus 137 ~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~ 178 (182)
++.++++|+|+.+|+|++. .+...+++.|..+.++-.+.+.
T Consensus 151 DP~lF~~F~I~~VPafVv~-C~~~yD~I~GNIsl~~ALe~iA 191 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVF-CSQGYDIIRGNLRVGQALEKVA 191 (212)
T ss_pred CHHHHHhcCCccccEEEEE-cCCCCCEEEecccHHHHHHHHH
Confidence 6889999999999999997 4455678889888655554443
No 243
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=87.78 E-value=7.2 Score=27.79 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=33.1
Q ss_pred HHHHHcCCCccc--EEEEEECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165 139 NIATKYGIRSIP--TVLFFKNGEKKESIIGAVPKSTLSSTLDKY 180 (182)
Q Consensus 139 ~l~~~~~I~~iP--Tl~~f~~G~~v~~~~G~~~~~~l~~~l~~~ 180 (182)
.+.++|++..-. .+++=|||++..++....+.++|.+.|+++
T Consensus 68 ~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 68 ALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred HHHHHhCCCCCceEEEEEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 688899966333 344448999999999999999999999863
No 244
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=87.21 E-value=0.18 Score=33.89 Aligned_cols=53 Identities=17% Similarity=0.272 Sum_probs=41.0
Q ss_pred EEcCCChhhhhhhHHHHHHHHH-hcCceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165 101 FWAPWCGPCRMIAPAIEELAKE-YAGKVACFKLNTDDSPNIATKYGIRSIPTVL 153 (182)
Q Consensus 101 F~a~wC~~C~~~~p~l~~~a~~-~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~ 153 (182)
|-+..-+..+.....++.+.+. +++...+-.+|+.+++++++.++|-++||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 3444445556666677777766 4567889999999999999999999999975
No 245
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=87.02 E-value=1 Score=27.28 Aligned_cols=54 Identities=11% Similarity=0.123 Sum_probs=35.0
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh--HHHHHcCCCcccEEEEEECCe
Q 030165 100 EFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP--NIATKYGIRSIPTVLFFKNGE 159 (182)
Q Consensus 100 ~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~--~l~~~~~I~~iPTl~~f~~G~ 159 (182)
.|+.++|+.|++..-.++...- .+....++.++.. ++.+..+-..+|++.. +|+
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~ 58 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGL----PYELVPVDLGEGEQEEFLALNPLGKVPVLED--GGL 58 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCC----CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCE
Confidence 5778999999988877766632 2344445544332 2455667789998865 454
No 246
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=86.89 E-value=3.9 Score=26.37 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=40.1
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC----hHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHH
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS----PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTL 173 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~----~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l 173 (182)
+..++.++|++|++.+-.+++.. +.+-.++++.. +++.+.-+-..+|+++.-.+| .. ......+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~g------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~-~~-----l~es~~I 69 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELE------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTG-VQ-----MFESADI 69 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcC------CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCC-eE-----EEcHHHH
Confidence 45677889999998887776653 33333444432 233333355789998542233 21 1244556
Q ss_pred HHHHHH
Q 030165 174 SSTLDK 179 (182)
Q Consensus 174 ~~~l~~ 179 (182)
.++|++
T Consensus 70 ~~yL~~ 75 (77)
T cd03041 70 VKYLFK 75 (77)
T ss_pred HHHHHH
Confidence 676664
No 247
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.79 E-value=2.8 Score=36.10 Aligned_cols=99 Identities=13% Similarity=0.183 Sum_probs=71.4
Q ss_pred cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165 75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF 154 (182)
Q Consensus 75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~ 154 (182)
.+.+..++.+-.++...-.+..-+=-|++-.|..|-..-..+.-++-.. .++.-..+|-..-++-.+.-+|-++||+++
T Consensus 97 ~G~ppk~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlN-p~I~H~~IdGa~Fq~Evear~IMaVPtvfl 175 (520)
T COG3634 97 GGHPPKEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLN-PRIKHTAIDGALFQDEVEARNIMAVPTVFL 175 (520)
T ss_pred cCCCCchhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcC-CCceeEEecchhhHhHHHhccceecceEEE
Confidence 4455556666666633335556677778888999988887777666444 468888998877777777789999999866
Q ss_pred EECCeEEEEEEcCCCHHHHHHHHH
Q 030165 155 FKNGEKKESIIGAVPKSTLSSTLD 178 (182)
Q Consensus 155 f~~G~~v~~~~G~~~~~~l~~~l~ 178 (182)
||++ .-.|.++.+++.+.|+
T Consensus 176 --nGe~--fg~GRmtleeilaki~ 195 (520)
T COG3634 176 --NGEE--FGQGRMTLEEILAKID 195 (520)
T ss_pred --cchh--hcccceeHHHHHHHhc
Confidence 8876 4457788887776664
No 248
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=86.41 E-value=3.3 Score=26.04 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=30.3
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165 100 EFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF 154 (182)
Q Consensus 100 ~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~ 154 (182)
.++.++|++|++.+-.+....-. +..+.++.+......+..+-..+|++..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~----~~~~~~~~~~~~~~~~~~~~~~vP~L~~ 53 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP----VEQIILQNDDEATPIRMIGAKQVPILEK 53 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC----eEEEECCCCchHHHHHhcCCCccCEEEe
Confidence 56788999999887776655322 2333444433333334445567898843
No 249
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=86.34 E-value=1.6 Score=30.90 Aligned_cols=34 Identities=12% Similarity=0.248 Sum_probs=26.2
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh
Q 030165 99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP 138 (182)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~ 138 (182)
..|+.++|+.|+.....|++. ++.+-.+|..+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN------GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCceEEEecCCCh
Confidence 468899999999999888773 3677777776554
No 250
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=86.29 E-value=1.1 Score=28.22 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=34.4
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC----ChHHHHHcCCCcccEEEE
Q 030165 99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD----SPNIATKYGIRSIPTVLF 154 (182)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~----~~~l~~~~~I~~iPTl~~ 154 (182)
..|+.++|++|+..+-.+++..-. .....++... .+++.+...-..+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID----VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC----ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 457889999999998887766322 3344555422 344555566778999965
No 251
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=84.32 E-value=1.8 Score=30.43 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=25.4
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh
Q 030165 99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP 138 (182)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~ 138 (182)
..|+.++|+.|++....|++- ++.|-.+|+.+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~ 35 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEEP 35 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCceEEecccCCc
Confidence 468899999999998888763 3666677765543
No 252
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=84.26 E-value=3 Score=31.74 Aligned_cols=58 Identities=17% Similarity=0.141 Sum_probs=39.2
Q ss_pred cEEcChhhHHHHHHcCCCcEEEEEEcCCC-hhhhhhhHHHHHHHHHhc---CceEEEEEeCCC
Q 030165 78 VQVVTDSSWENLVISSENPVLVEFWAPWC-GPCRMIAPAIEELAKEYA---GKVACFKLNTDD 136 (182)
Q Consensus 78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC-~~C~~~~p~l~~~a~~~~---~~v~~~~vd~d~ 136 (182)
++..++..+.. ..-.++++||.|.=..| ..|-.....+.++.+++. .++.++.|.+|-
T Consensus 37 L~d~~G~~~~~-~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 37 LTDQDGKTVTL-DDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp EEETTSSEEEG-GGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred EEcCCCCEecH-HHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 34444444443 22368999999998888 578888888877777664 358888887764
No 253
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=83.62 E-value=2.3 Score=30.94 Aligned_cols=35 Identities=29% Similarity=0.439 Sum_probs=24.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP 138 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~ 138 (182)
+..|+.+||+.|++....|++. ++.+-.+|+.+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCCh
Confidence 5578899999999988777654 2556666665443
No 254
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=81.94 E-value=3.9 Score=25.61 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=40.5
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC-hHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHH
Q 030165 99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS-PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTL 177 (182)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~-~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l 177 (182)
..|+.++|+.|++..-.+++..-. .....+|.+.. +++.+......+|++. .+|.. ......+.++|
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~----~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~------l~es~aI~~yL 69 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS----VEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLV------LYESRIIMEYL 69 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc----cEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEE------EEcHHHHHHHH
Confidence 467889999999998777655333 33334454433 3445555567899774 34422 12344566666
Q ss_pred HH
Q 030165 178 DK 179 (182)
Q Consensus 178 ~~ 179 (182)
++
T Consensus 70 ~~ 71 (73)
T cd03059 70 DE 71 (73)
T ss_pred Hh
Confidence 54
No 255
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=81.66 E-value=2.2 Score=29.83 Aligned_cols=41 Identities=15% Similarity=0.065 Sum_probs=28.3
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh-------HHHHHcC
Q 030165 99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP-------NIATKYG 145 (182)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~-------~l~~~~~ 145 (182)
..|+.+||+.|++....|++- ++.+-.+|..+++ .+.+++|
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~p~s~~eL~~~l~~~g 49 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKDGLDAATLERWLAKVG 49 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccCCCCHHHHHHHHHHhC
Confidence 568899999999988777765 3555566665443 3455555
No 256
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=81.25 E-value=8.7 Score=29.32 Aligned_cols=105 Identities=13% Similarity=0.219 Sum_probs=66.9
Q ss_pred ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCC--------CChH----HHHH
Q 030165 77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTD--------DSPN----IATK 143 (182)
Q Consensus 77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d--------~~~~----l~~~ 143 (182)
.+..++++.+.- -.-.++.+||.=-|+-|+.-..--..|.++.++|..+ +.++..-+. .+.+ +..+
T Consensus 18 ~~~d~~G~~v~l-~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r 96 (171)
T KOG1651|consen 18 SAKDLDGEYVSL-SQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKVR 96 (171)
T ss_pred EEecCCCCCccH-HHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHhc
Confidence 345555544332 3347889999999999999885556888888888643 444444332 1112 2233
Q ss_pred cCCC-----------------------------------cccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165 144 YGIR-----------------------------------SIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182 (182)
Q Consensus 144 ~~I~-----------------------------------~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~ 182 (182)
|+.. .+=-+++-+||+.+.|+.-..++.+++.-|+++|.
T Consensus 97 ~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL~ 170 (171)
T KOG1651|consen 97 YGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLLA 170 (171)
T ss_pred cCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHhc
Confidence 3331 12235555899999999877788888888888873
No 257
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=80.51 E-value=2.3 Score=36.10 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=45.6
Q ss_pred eEEEEEeCCCChHHHHHcCCCcccEEEEEE--CCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 127 VACFKLNTDDSPNIATKYGIRSIPTVLFFK--NGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 127 v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~--~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
...+..|..+.+.+.+-|.+..+|.+.+++ -|+.+.+..|..++++|..-++++|
T Consensus 133 wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi 189 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFI 189 (356)
T ss_pred EEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHH
Confidence 334456666778899999999999888884 7999999999999999998888876
No 258
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=80.15 E-value=2.4 Score=29.52 Aligned_cols=57 Identities=19% Similarity=0.452 Sum_probs=40.4
Q ss_pred EEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCC--cccEEEE-EECCe
Q 030165 101 FWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIR--SIPTVLF-FKNGE 159 (182)
Q Consensus 101 F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~--~iPTl~~-f~~G~ 159 (182)
||..+|+-|......+++. +..+.+.|+.+..+...++.+.+++. ..-+.++ .++|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~--d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR--DRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhc--CCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 7899999999999888877 22345777766555666667788876 4555555 46886
No 259
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=80.00 E-value=15 Score=29.67 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=37.6
Q ss_pred HcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC----ceEEEEEeCC
Q 030165 91 ISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG----KVACFKLNTD 135 (182)
Q Consensus 91 ~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~----~v~~~~vd~d 135 (182)
...+..+||-+-..+|..|..-+..|+.+..++.. +|.|+.||--
T Consensus 23 ~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 23 NSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred hcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 45678899999999999999999999998877753 4889988864
No 260
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=79.91 E-value=24 Score=29.76 Aligned_cols=92 Identities=15% Similarity=0.260 Sum_probs=51.6
Q ss_pred cEEcChhhHH-HHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHc-CCCcccEEEEE
Q 030165 78 VQVVTDSSWE-NLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKY-GIRSIPTVLFF 155 (182)
Q Consensus 78 v~~l~~~~~~-~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~-~I~~iPTl~~f 155 (182)
+..++..+.. ..+.+++++..|+|...- .|.++++.+....++.+... .....+++-.+ ..+..|.+.+|
T Consensus 136 I~pi~enQ~~fehlq~Rhq~ffVf~Gtge-------~PL~d~fidAASe~~~~a~F-fSaseeVaPe~~~~kempaV~VF 207 (468)
T KOG4277|consen 136 IEPINENQIEFEHLQARHQPFFVFFGTGE-------GPLFDAFIDAASEKFSVARF-FSASEEVAPEENDAKEMPAVAVF 207 (468)
T ss_pred eeecChhHHHHHHHhhccCceEEEEeCCC-------CcHHHHHHHHhhhheeeeee-eccccccCCcccchhhccceEEE
Confidence 4445553433 336678999999998652 34444444433333222211 12223333333 35668999999
Q ss_pred ECCeEEEEEEcCCCHHHHHHHHHH
Q 030165 156 KNGEKKESIIGAVPKSTLSSTLDK 179 (182)
Q Consensus 156 ~~G~~v~~~~G~~~~~~l~~~l~~ 179 (182)
|+..--.. ...+.++|.+||.+
T Consensus 208 KDetf~i~--de~dd~dLseWinR 229 (468)
T KOG4277|consen 208 KDETFEIE--DEGDDEDLSEWINR 229 (468)
T ss_pred ccceeEEE--ecCchhHHHHHHhH
Confidence 98743333 34567889999875
No 261
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=79.77 E-value=2.9 Score=31.61 Aligned_cols=28 Identities=43% Similarity=0.828 Sum_probs=25.1
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcC
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAG 125 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~ 125 (182)
|.+|+.+.|+.|-...+.++++.++++.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 6688899999999999999999999843
No 262
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=78.33 E-value=7.9 Score=31.51 Aligned_cols=58 Identities=16% Similarity=0.187 Sum_probs=38.9
Q ss_pred HcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcC-CCcccEEEEEE
Q 030165 91 ISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYG-IRSIPTVLFFK 156 (182)
Q Consensus 91 ~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~-I~~iPTl~~f~ 156 (182)
...+|+.+++..+.||+.|-+.+=.|-.+..+|.. +......-+. ++ --.+||++|..
T Consensus 55 ~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn-~~l~~~~S~~-------~d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 55 APNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN-FSLEYHYSDP-------YDNYPNTPTLIFNN 113 (249)
T ss_pred CCCCeeEEEEEecccCccchhhHHHHHHHHHhcCC-eeeEEeecCc-------ccCCCCCCeEEEec
Confidence 36789999999999999998888666666666654 4333222222 22 24678887763
No 263
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=77.07 E-value=3.1 Score=31.49 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=18.9
Q ss_pred ChHHHHHcCCCcccEEEEEECCe
Q 030165 137 SPNIATKYGIRSIPTVLFFKNGE 159 (182)
Q Consensus 137 ~~~l~~~~~I~~iPTl~~f~~G~ 159 (182)
+.+.+.++||.++||+++..++.
T Consensus 158 ~~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 158 DQKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHHcCCCccCEEEEEeCCe
Confidence 34567889999999999997665
No 264
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=76.94 E-value=2.7 Score=26.50 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=33.9
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC----ChHHHHHcCCCcccEEEE
Q 030165 99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD----SPNIATKYGIRSIPTVLF 154 (182)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~----~~~l~~~~~I~~iPTl~~ 154 (182)
..|+.++|+.|++.+-.+++..- .+....+|..+ .+++.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi----~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL----ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC----CCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 46889999999988777766532 24444555432 245555555678999953
No 265
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=75.64 E-value=6.7 Score=27.60 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=24.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~ 137 (182)
+..|+.++|+.|++....|++. ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence 4568899999999988888764 255666666544
No 266
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=74.60 E-value=18 Score=23.91 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=34.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh-HHHHHcCCCcccEEEE
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP-NIATKYGIRSIPTVLF 154 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~-~l~~~~~I~~iPTl~~ 154 (182)
+..|+.+.|++|+...-.+++..- .+.+..++.+... ++.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl----~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI----PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC----CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 556778889999988766665432 2455556654433 3555556778999974
No 267
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=73.82 E-value=18 Score=27.91 Aligned_cols=89 Identities=16% Similarity=0.267 Sum_probs=43.2
Q ss_pred cCCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeC---------------------CCChHHHHHcCCCc
Q 030165 92 SSENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNT---------------------DDSPNIATKYGIRS 148 (182)
Q Consensus 92 ~~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~---------------------d~~~~l~~~~~I~~ 148 (182)
..+++||++|| +.--+-|..-.--|.+-++++.. ...++.+.. |.-.++...+|+..
T Consensus 88 t~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF~sKqnlPYhLLSDpk~e~ik~lGa~k 167 (211)
T KOG0855|consen 88 TGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKAFASKQNLPYHLLSDPKNEVIKDLGAPK 167 (211)
T ss_pred cCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHHhhhhccCCeeeecCcchhHHHHhCCCC
Confidence 45679999999 33334444433333333333221 233444443 33445677777776
Q ss_pred cc-------EEEEEECC--eEEEEEEcCCCHHHHHHHHHHH
Q 030165 149 IP-------TVLFFKNG--EKKESIIGAVPKSTLSSTLDKY 180 (182)
Q Consensus 149 iP-------Tl~~f~~G--~~v~~~~G~~~~~~l~~~l~~~ 180 (182)
.| .-.+|.+| +.........+.-.+.+.+.-+
T Consensus 168 ~p~gg~~~Rsh~if~kg~~k~~ik~~~isPevsvd~a~k~~ 208 (211)
T KOG0855|consen 168 DPFGGLPGRSHYIFDKGGVKQLIKNNQISPEVSVDEALKFL 208 (211)
T ss_pred CCCCCcccceEEEEecCCeEEEEEecccCccccHHHHHHHH
Confidence 44 24455444 3333333444554555554433
No 268
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=73.75 E-value=26 Score=28.83 Aligned_cols=89 Identities=16% Similarity=0.224 Sum_probs=56.1
Q ss_pred CCCcEEEEEEcCCChh-hhhhhHHHHHHHHHhcCc------eEEEEEeCCCCh--------------------------H
Q 030165 93 SENPVLVEFWAPWCGP-CRMIAPAIEELAKEYAGK------VACFKLNTDDSP--------------------------N 139 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~-C~~~~p~l~~~a~~~~~~------v~~~~vd~d~~~--------------------------~ 139 (182)
.++-+|++|.=+.|+. |-.....+.++.++.+.+ -.|+.+|-+... +
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 4788999999888875 544444444444444322 256677763322 3
Q ss_pred HHHHcCCCccc-------------EEEEE---ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 140 IATKYGIRSIP-------------TVLFF---KNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 140 l~~~~~I~~iP-------------Tl~~f---~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
+|+.|.|-.-. ++++| .+|+-++.+....+++++.+-|.+.+
T Consensus 218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v 275 (280)
T KOG2792|consen 218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHV 275 (280)
T ss_pred HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHH
Confidence 66666653211 33333 58888888877889999998887654
No 269
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=73.52 E-value=42 Score=26.29 Aligned_cols=87 Identities=18% Similarity=0.253 Sum_probs=54.8
Q ss_pred CCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCC----------------------------CChHHHHH
Q 030165 94 ENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTD----------------------------DSPNIATK 143 (182)
Q Consensus 94 ~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d----------------------------~~~~l~~~ 143 (182)
++-+++.|| ++.=..|-.....|.+...++.. ++.++.+.+| .+.++++.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ 112 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence 378888888 55566666677777777777653 3666666553 34468888
Q ss_pred cCCCccc-------EEEEEECCeEEEEEEcC----CCHHHHHHHHHHH
Q 030165 144 YGIRSIP-------TVLFFKNGEKKESIIGA----VPKSTLSSTLDKY 180 (182)
Q Consensus 144 ~~I~~iP-------Tl~~f~~G~~v~~~~G~----~~~~~l~~~l~~~ 180 (182)
||+-.-. ++++-++|.......-. .+.+++...|+.+
T Consensus 113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred cCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 9876321 34444688766655432 4567777776654
No 270
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=72.62 E-value=22 Score=22.57 Aligned_cols=69 Identities=13% Similarity=0.184 Sum_probs=45.7
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC-hHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHH
Q 030165 100 EFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS-PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178 (182)
Q Consensus 100 ~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~-~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~ 178 (182)
.++.++|++|++..=.++... -.+.+..++..+. .++.+...-..+|++. .+|..+ .+-..+.++|+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~----i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l------~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKG----IPYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL------TDSAAIIEYLE 68 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHT----EEEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE------ESHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcC----CeEEEeccCcccchhHHHhhcccccceEEE--ECCEEE------eCHHHHHHHHH
Confidence 367899999998876555442 1355566666553 4566667778899997 567632 24556777776
Q ss_pred HH
Q 030165 179 KY 180 (182)
Q Consensus 179 ~~ 180 (182)
+.
T Consensus 69 ~~ 70 (75)
T PF13417_consen 69 ER 70 (75)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 271
>PRK12559 transcriptional regulator Spx; Provisional
Probab=72.38 E-value=6.8 Score=28.50 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=22.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD 135 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d 135 (182)
+..|+.++|+.|+.....|++- ++.+-.+|+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------gi~~~~~di~ 33 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN------QIDYTEKNIV 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCeEEEEee
Confidence 5678899999999988777654 2445555554
No 272
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.41 E-value=17 Score=25.47 Aligned_cols=55 Identities=20% Similarity=0.255 Sum_probs=36.7
Q ss_pred cCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcC-CCcccEE-EEEECCeEEE
Q 030165 103 APWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYG-IRSIPTV-LFFKNGEKKE 162 (182)
Q Consensus 103 a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~-I~~iPTl-~~f~~G~~v~ 162 (182)
.|-||...+...+|... .. +.|..+|+-+++++.+... ...+||+ -+|-||+-+.
T Consensus 27 ~P~CGFS~~~vqiL~~~----g~-v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvG 83 (105)
T COG0278 27 FPQCGFSAQAVQILSAC----GV-VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVG 83 (105)
T ss_pred CCCCCccHHHHHHHHHc----CC-cceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEec
Confidence 46788877766655544 22 7899999999998876554 3456775 3445886543
No 273
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=68.64 E-value=29 Score=25.09 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=32.2
Q ss_pred ceEEEEEeCCCChH----------HHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHH
Q 030165 126 KVACFKLNTDDSPN----------IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178 (182)
Q Consensus 126 ~v~~~~vd~d~~~~----------l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~ 178 (182)
.+.+...|...++. +.++-|....|-+++ ||+.+.. ....+.++|.+|+.
T Consensus 40 gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~~-G~YPt~eEl~~~~~ 99 (123)
T PF06953_consen 40 GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVKT-GRYPTNEELAEWLG 99 (123)
T ss_dssp T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEEE-SS---HHHHHHHHT
T ss_pred CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEEe-cCCCCHHHHHHHhC
Confidence 48888999887764 445579999998877 9977543 23457889999875
No 274
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=67.31 E-value=4.5 Score=31.45 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=26.7
Q ss_pred HHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHH
Q 030165 139 NIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTL 177 (182)
Q Consensus 139 ~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l 177 (182)
+.+.+.||.++|++++=.++..-..+-|..-.+.+.++|
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHHh
Confidence 456778999999998854322234677876666666655
No 275
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=66.38 E-value=9.2 Score=23.72 Aligned_cols=55 Identities=13% Similarity=0.231 Sum_probs=33.8
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC----ChHHHHHcCCCcccEEEEEECCe
Q 030165 99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD----SPNIATKYGIRSIPTVLFFKNGE 159 (182)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~----~~~l~~~~~I~~iPTl~~f~~G~ 159 (182)
..|+.++|+.|+...-.+++..-. .....+|... ..++.+...-..+|++.. +|.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~----~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~ 60 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIP----YEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGR 60 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC----cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCE
Confidence 357789999999887766665322 3444555422 233444445668999964 454
No 276
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=66.18 E-value=10 Score=25.08 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=22.3
Q ss_pred cccEEEEEE-CCeEEEEEE-cCCCHHHHHHHHHHHh
Q 030165 148 SIPTVLFFK-NGEKKESII-GAVPKSTLSSTLDKYV 181 (182)
Q Consensus 148 ~iPTl~~f~-~G~~v~~~~-G~~~~~~l~~~l~~~l 181 (182)
+-|+++++. +|+++.++. ..++.+++.++|.+.+
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 458999996 888777654 4579999999998754
No 277
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=65.96 E-value=38 Score=25.00 Aligned_cols=66 Identities=17% Similarity=0.310 Sum_probs=49.8
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcc-c-EEEEEECCeE
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSI-P-TVLFFKNGEK 160 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~i-P-Tl~~f~~G~~ 160 (182)
.+++-.|.+|.-.|+.|-.....+.+. +..+.+.|+.+..+....+...+|+.-- + ++++.++|+.
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~--D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~ 72 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRR--DQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQL 72 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHh--ccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCce
Confidence 467778889999999999866555443 2345699999998988999999988754 4 5555567764
No 278
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=65.74 E-value=10 Score=32.39 Aligned_cols=76 Identities=14% Similarity=0.229 Sum_probs=45.9
Q ss_pred ChhhhhhhHH----HHHHHHHhcC---ceEEEEEeCC-CC--hHHHHHcCCCccc-EEEEEECCeEEEEEEcCCCHHHHH
Q 030165 106 CGPCRMIAPA----IEELAKEYAG---KVACFKLNTD-DS--PNIATKYGIRSIP-TVLFFKNGEKKESIIGAVPKSTLS 174 (182)
Q Consensus 106 C~~C~~~~p~----l~~~a~~~~~---~v~~~~vd~d-~~--~~l~~~~~I~~iP-Tl~~f~~G~~v~~~~G~~~~~~l~ 174 (182)
||.|..-.-. ..++.+.|.+ .+++...-+- +. +.-.+++||-+-+ ..++|++|+.+.++.+..-.++|.
T Consensus 271 CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~ 350 (360)
T PRK00366 271 CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELE 350 (360)
T ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHH
Confidence 5555444333 3444455543 2555555552 22 2335567887654 688899999999887766667777
Q ss_pred HHHHHHh
Q 030165 175 STLDKYV 181 (182)
Q Consensus 175 ~~l~~~l 181 (182)
+.|+++.
T Consensus 351 ~~i~~~~ 357 (360)
T PRK00366 351 AEIEAYA 357 (360)
T ss_pred HHHHHHH
Confidence 7776654
No 279
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=63.22 E-value=15 Score=26.78 Aligned_cols=33 Identities=9% Similarity=0.207 Sum_probs=22.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~ 136 (182)
+..|+.++|+.|++....|++- ++.+-.+|..+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH------QLSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc------CCCeEEEECCC
Confidence 4567899999999987666553 25555566543
No 280
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=60.80 E-value=15 Score=31.32 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=51.5
Q ss_pred EEEEEEcCCChhhhhhhHHHHH----HHHHhcC---ceEEEEEeCCC---ChHHHHHcCCCc--ccEEEEEECCeEEEEE
Q 030165 97 VLVEFWAPWCGPCRMIAPAIEE----LAKEYAG---KVACFKLNTDD---SPNIATKYGIRS--IPTVLFFKNGEKKESI 164 (182)
Q Consensus 97 vlV~F~a~wC~~C~~~~p~l~~----~a~~~~~---~v~~~~vd~d~---~~~l~~~~~I~~--iPTl~~f~~G~~v~~~ 164 (182)
.-+.|.| ||.|-...-.+.+ +.+.+.. .+++..+-+-- -+..-..+||.+ -|...+|++|+.+.++
T Consensus 257 ~~v~~ia--CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~ 334 (361)
T COG0821 257 RGVEVIA--CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKL 334 (361)
T ss_pred cCceEEE--CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEec
Confidence 3444443 8888766544433 3333332 24444333321 122334577764 5899999999999998
Q ss_pred EcCCCHHHHHHHHHHHh
Q 030165 165 IGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 165 ~G~~~~~~l~~~l~~~l 181 (182)
.+..-.++|...++++.
T Consensus 335 ~~~~~~eel~~~i~~~~ 351 (361)
T COG0821 335 PEEDIVEELEALIEAYA 351 (361)
T ss_pred ChhhHHHHHHHHHHHHH
Confidence 88888888888888765
No 281
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=57.91 E-value=53 Score=26.30 Aligned_cols=74 Identities=24% Similarity=0.354 Sum_probs=50.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHH
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTL 177 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l 177 (182)
+=-|....|..|.++-..+++-. +-++++| ++.+....++-+-+|-++|.+++ ||+.+ +.+..++++++..+
T Consensus 13 VkI~~HktC~ssy~Lf~~L~nkg--ll~~Vki--i~a~~p~f~~~~~~V~SvP~Vf~--DGel~--~~dpVdp~~ies~~ 84 (265)
T COG5494 13 VKIFTHKTCVSSYMLFEYLENKG--LLGKVKI--IDAELPPFLAFEKGVISVPSVFI--DGELV--YADPVDPEEIESIL 84 (265)
T ss_pred EEEEEecchHHHHHHHHHHHhcC--CCCCceE--EEcCCChHHHhhcceeecceEEE--cCeEE--EcCCCCHHHHHHHH
Confidence 33466778999988766665411 1234554 45666667777778999999755 99874 45778888888776
Q ss_pred HH
Q 030165 178 DK 179 (182)
Q Consensus 178 ~~ 179 (182)
+.
T Consensus 85 ~G 86 (265)
T COG5494 85 SG 86 (265)
T ss_pred cC
Confidence 53
No 282
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=57.32 E-value=20 Score=23.82 Aligned_cols=31 Identities=29% Similarity=0.470 Sum_probs=25.2
Q ss_pred ccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 149 IPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 149 iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
-.|+.+|..|+. ...|+.+.+++.+.+++++
T Consensus 49 ~~t~~IF~sGki--~itGaks~~~~~~a~~~i~ 79 (86)
T PF00352_consen 49 KATVLIFSSGKI--VITGAKSEEEAKKAIEKIL 79 (86)
T ss_dssp TEEEEEETTSEE--EEEEESSHHHHHHHHHHHH
T ss_pred cEEEEEEcCCEE--EEEecCCHHHHHHHHHHHH
Confidence 468999999987 5568889999988888764
No 283
>COG3411 Ferredoxin [Energy production and conversion]
Probab=56.37 E-value=28 Score=22.24 Aligned_cols=29 Identities=10% Similarity=0.187 Sum_probs=24.4
Q ss_pred ccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 149 IPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 149 iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
=|++++|.+| .+.+.+++++..+.+++.|
T Consensus 17 gPvl~vYpeg----vWY~~V~p~~a~rIv~~hl 45 (64)
T COG3411 17 GPVLVVYPEG----VWYTRVDPEDARRIVQSHL 45 (64)
T ss_pred CCEEEEecCC----eeEeccCHHHHHHHHHHHH
Confidence 3899999999 6677889999999888776
No 284
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=48.97 E-value=57 Score=25.68 Aligned_cols=40 Identities=23% Similarity=0.511 Sum_probs=29.3
Q ss_pred HHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEE
Q 030165 116 IEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKK 161 (182)
Q Consensus 116 l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v 161 (182)
+.++.+++...+. .|....+.++|+|+.+|.++. .+|+..
T Consensus 158 ~~~l~~~l~~~vY-----fdQ~g~Lt~rF~I~~VPavV~-q~g~~l 197 (202)
T TIGR02743 158 VNELEKRLDSRIY-----FDQHGKLTQKFGIKHVPARVS-QEGLRL 197 (202)
T ss_pred HHHHHHHhCCceE-----EcCCchHhhccCceeeceEEE-ecCCEE
Confidence 5677777765443 356678999999999999986 566543
No 285
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=47.77 E-value=12 Score=30.18 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=21.1
Q ss_pred ccCCCCccceeeccCCCCcccccCccc
Q 030165 22 CYQPFSSVKKIHLPISNGLNKSNFSFT 48 (182)
Q Consensus 22 ~~~~~~~~~~~~~p~~~~~~~~~~~~~ 48 (182)
|+.-|.-++.+.||.|.|.-|+|.+..
T Consensus 29 py~e~~g~~~vtCPTCqGtGrIP~eqe 55 (238)
T PF07092_consen 29 PYVEFTGRDSVTCPTCQGTGRIPREQE 55 (238)
T ss_pred ccccccCCCCCcCCCCcCCccCCccch
Confidence 444455678899999999999988763
No 286
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=46.66 E-value=15 Score=22.39 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=14.6
Q ss_pred ceeeccCCCCcccccCcc
Q 030165 30 KKIHLPISNGLNKSNFSF 47 (182)
Q Consensus 30 ~~~~~p~~~~~~~~~~~~ 47 (182)
-.+.||.|+.+|.+...+
T Consensus 23 leIKCpRC~tiN~~~a~~ 40 (51)
T PF10122_consen 23 LEIKCPRCKTINHVRATS 40 (51)
T ss_pred EEEECCCCCccceEeccC
Confidence 478999999999875544
No 287
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=46.63 E-value=99 Score=23.69 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=39.5
Q ss_pred cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC-hHHHHHcCCCcccEEEEEECCe
Q 030165 92 SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS-PNIATKYGIRSIPTVLFFKNGE 159 (182)
Q Consensus 92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~-~~l~~~~~I~~iPTl~~f~~G~ 159 (182)
.++...+-.|+.++|+.|....=.+++.. -.+....+|.+.. +++.+.---..+|++. .+|.
T Consensus 5 ~~~~~~~~Ly~~~~s~~~~rv~~~L~e~g----l~~e~~~v~~~~~~~~~~~~nP~g~VPvL~--~~g~ 67 (211)
T PRK09481 5 ANKRSVMTLFSGPTDIYSHQVRIVLAEKG----VSVEIEQVEKDNLPQDLIDLNPYQSVPTLV--DREL 67 (211)
T ss_pred CCCCCeeEEeCCCCChhHHHHHHHHHHCC----CCCEEEeCCcccCCHHHHHhCCCCCCCEEE--ECCE
Confidence 34555677777889999999887666543 2345556665443 3444444456899996 3554
No 288
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=45.72 E-value=55 Score=23.37 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=23.5
Q ss_pred HHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHH
Q 030165 140 IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 179 (182)
Q Consensus 140 l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~ 179 (182)
-+-.|||+.+|.++| |++. -+.|..+...-.+.+++
T Consensus 75 ~Aw~lgi~k~PAVVf--D~~~--VVYG~tDV~~A~~~~~~ 110 (114)
T PF07511_consen 75 DAWSLGITKYPAVVF--DDRY--VVYGETDVARALARIEQ 110 (114)
T ss_pred HHHHhCccccCEEEE--cCCe--EEecccHHHHHHHHHHH
Confidence 366899999999988 4543 44576665544444443
No 289
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=45.60 E-value=46 Score=20.75 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=34.6
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC----CChHHHHHcCCCcccEEEEEECCe
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD----DSPNIATKYGIRSIPTVLFFKNGE 159 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d----~~~~l~~~~~I~~iPTl~~f~~G~ 159 (182)
+..|+.+.|+.|+...-.++...-. +....++.. ..+++.+......+|++. .+|.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~----~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~g~ 61 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD----YELVPVDLTKGEHKSPEHLARNPFGQIPALE--DGDL 61 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC----cEEEEeCccccccCCHHHHhhCCCCCCCEEE--ECCE
Confidence 4456677799998888777665322 344444442 124455666677899875 3553
No 290
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=45.34 E-value=1.4e+02 Score=23.68 Aligned_cols=78 Identities=14% Similarity=0.306 Sum_probs=48.6
Q ss_pred hHHHHHHcCCCcEEEEEE-----cCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCCChH-------------------
Q 030165 85 SWENLVISSENPVLVEFW-----APWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSPN------------------- 139 (182)
Q Consensus 85 ~~~~~~~~~~~~vlV~F~-----a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~~~~------------------- 139 (182)
.+.++.......+|..|. ..-|+-|..+...+.-....+..+ +.|+.|.-..-.+
T Consensus 59 ~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~pw~Ss~g 138 (211)
T PF05988_consen 59 SLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTFPWYSSYG 138 (211)
T ss_pred cHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCceEEEcCC
Confidence 344444445556666665 456999999999995555555444 8888886543332
Q ss_pred --HHHHcCC-----CcccEEEEE-ECCeEEE
Q 030165 140 --IATKYGI-----RSIPTVLFF-KNGEKKE 162 (182)
Q Consensus 140 --l~~~~~I-----~~iPTl~~f-~~G~~v~ 162 (182)
+-..|++ ...|.+-+| ++|..|.
T Consensus 139 s~Fn~D~~~~~~~~~~~~g~svF~Rdg~~Vf 169 (211)
T PF05988_consen 139 SDFNYDFGVSFDEGGEMPGLSVFLRDGGRVF 169 (211)
T ss_pred CcccccccceeccCCCceeEEEEEEcCCEEE
Confidence 2233565 567877666 6665554
No 291
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=45.19 E-value=24 Score=32.21 Aligned_cols=73 Identities=14% Similarity=0.355 Sum_probs=53.5
Q ss_pred ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHH-H--HHHHHHhcCceEEEEEeCCCChHHH--------HHcCCCccc
Q 030165 82 TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPA-I--EELAKEYAGKVACFKLNTDDSPNIA--------TKYGIRSIP 150 (182)
Q Consensus 82 ~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~-l--~~~a~~~~~~v~~~~vd~d~~~~l~--------~~~~I~~iP 150 (182)
..+.|++ +.++++|+++-..-+.|..|..|... | ++.++.+..++.-++||-++-+++- ..+|--++|
T Consensus 101 gqeaf~k-ar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWP 179 (786)
T KOG2244|consen 101 GQEAFNK-ARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWP 179 (786)
T ss_pred hHHHHHH-HHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCc
Confidence 3455666 77889999999999999999999864 4 4577777766666677777666543 345677888
Q ss_pred EEEEE
Q 030165 151 TVLFF 155 (182)
Q Consensus 151 Tl~~f 155 (182)
.-+++
T Consensus 180 msV~L 184 (786)
T KOG2244|consen 180 MSVFL 184 (786)
T ss_pred eeEEe
Confidence 76666
No 292
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=44.88 E-value=8.2 Score=21.42 Aligned_cols=18 Identities=17% Similarity=-0.014 Sum_probs=14.5
Q ss_pred eeeccCCCCcccccCccc
Q 030165 31 KIHLPISNGLNKSNFSFT 48 (182)
Q Consensus 31 ~~~~p~~~~~~~~~~~~~ 48 (182)
.+.||+|+..++++.+..
T Consensus 2 ~~~CP~C~~~~~v~~~~~ 19 (38)
T TIGR02098 2 RIQCPNCKTSFRVVDSQL 19 (38)
T ss_pred EEECCCCCCEEEeCHHHc
Confidence 478999999998876654
No 293
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=43.16 E-value=31 Score=24.29 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=17.3
Q ss_pred EEEEEcCCChhhhhhhHHHHHH
Q 030165 98 LVEFWAPWCGPCRMIAPAIEEL 119 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~ 119 (182)
+..|+.+.|..|++....|++-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~ 23 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA 23 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 4568899999999888766654
No 294
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=41.77 E-value=56 Score=22.26 Aligned_cols=62 Identities=23% Similarity=0.475 Sum_probs=38.2
Q ss_pred CChhhhhhhHHHHHHHHHhcC----ceEEEEEeCCCChHHHHHcCC-CcccEEEEEE--CCeEEEEEEcCCCHHHHHHHH
Q 030165 105 WCGPCRMIAPAIEELAKEYAG----KVACFKLNTDDSPNIATKYGI-RSIPTVLFFK--NGEKKESIIGAVPKSTLSSTL 177 (182)
Q Consensus 105 wC~~C~~~~p~l~~~a~~~~~----~v~~~~vd~d~~~~l~~~~~I-~~iPTl~~f~--~G~~v~~~~G~~~~~~l~~~l 177 (182)
-|+.+- .+.++.+.+.+.. ++.+.... -+|- +.=|++++|. +| .+.|..+++++.+.|
T Consensus 15 ~C~~~g--~~l~~~l~~~l~~~~~~~v~v~~~~---------clG~c~~gp~vvvyP~~~g----~wy~~v~p~~v~~Iv 79 (97)
T cd03062 15 RCGICG--PPLAAELRAELPEHGPGGVRVWEVS---------HVGGHKFAGNVIIYPKGDG----IWYGRVTPEHVPPIV 79 (97)
T ss_pred ChhhcC--HHHHHHHHHHHHHhCCCceEEEeCC---------cCCccCcCCEEEEEeCCCe----eEEeecCHHHHHHHH
Confidence 455542 3556666666653 23322221 2333 3459999998 65 566778999999998
Q ss_pred HHHh
Q 030165 178 DKYV 181 (182)
Q Consensus 178 ~~~l 181 (182)
++.+
T Consensus 80 ~~hl 83 (97)
T cd03062 80 DRLI 83 (97)
T ss_pred HHHh
Confidence 8765
No 295
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=41.31 E-value=54 Score=26.61 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=54.3
Q ss_pred CcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEE------------------eCCCChHHHHHcCCCcccEEEEEE
Q 030165 95 NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKL------------------NTDDSPNIATKYGIRSIPTVLFFK 156 (182)
Q Consensus 95 ~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~v------------------d~d~~~~l~~~~~I~~iPTl~~f~ 156 (182)
..||=.|++-.|..|-.....|.+++++=. +.-+.. +++.+....+.|+-++++|=-.+-
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~~~--vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavv 119 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADDPG--VLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVV 119 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccCCC--EEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchhee
Confidence 446667778899999999888888886522 222222 223444577789999999887777
Q ss_pred CCeEEEEEEcCCCHHHHHHHHHH
Q 030165 157 NGEKKESIIGAVPKSTLSSTLDK 179 (182)
Q Consensus 157 ~G~~v~~~~G~~~~~~l~~~l~~ 179 (182)
||+.- ..| .+..++.+.|+.
T Consensus 120 nGr~~--~~G-ad~~~i~~~i~a 139 (261)
T COG5429 120 NGRVH--ANG-ADPGAIEDAIAA 139 (261)
T ss_pred echhh--hcC-CCHHHHHHHHHH
Confidence 99753 334 466667777654
No 296
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=41.29 E-value=1.2e+02 Score=21.22 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=35.2
Q ss_pred cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC
Q 030165 92 SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD 136 (182)
Q Consensus 92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~ 136 (182)
-.++++||.=.|+-|+.-. --..|+++.++|.. .+.++..-+++
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 3679999999999999988 55589999999973 47777776643
No 297
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=39.62 E-value=97 Score=19.50 Aligned_cols=55 Identities=9% Similarity=0.096 Sum_probs=33.7
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC----ChHHHHHcCCCcccEEEEEECCe
Q 030165 99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD----SPNIATKYGIRSIPTVLFFKNGE 159 (182)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~----~~~l~~~~~I~~iPTl~~f~~G~ 159 (182)
..|+.+.|+.|+..+-.+++..- ...+..+|... .+++.+.-.-..+|++. .+|.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl----~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~ 60 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL----RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDN 60 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC----CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCE
Confidence 46778889999887755555432 24555665532 23455545566899995 3664
No 298
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=38.87 E-value=1e+02 Score=24.41 Aligned_cols=41 Identities=17% Similarity=0.364 Sum_probs=28.8
Q ss_pred HHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE-ECCeEEE
Q 030165 117 EELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF-KNGEKKE 162 (182)
Q Consensus 117 ~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f-~~G~~v~ 162 (182)
.++.+.+...+. .|....|.++|||+.+|.++.- .+|+...
T Consensus 157 ~~~~~~l~~~vY-----fdQ~G~Lt~rF~I~~VPAvV~~~q~G~~l~ 198 (209)
T PRK13738 157 PEMSKALDSRIY-----FDQNGVLCQRFGIDQVPARVSAVPGGRFLK 198 (209)
T ss_pred HHHHHHhCCceE-----EcCcchHHHhcCCeeeceEEEEcCCCCEEE
Confidence 566667765443 3556679999999999999862 5676543
No 299
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=38.08 E-value=61 Score=23.23 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=29.8
Q ss_pred cccEEEEEECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165 148 SIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY 180 (182)
Q Consensus 148 ~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~ 180 (182)
++|.+++||+-+.++-..-..+.+++.+.+++.
T Consensus 82 ~~PiL~YFkE~qsiHFlPiiFd~~~L~~~l~~r 114 (116)
T PF11317_consen 82 GFPILFYFKETQSIHFLPIIFDPKQLREQLEER 114 (116)
T ss_pred CCCEEEEEecCCcceeeeeecCHHHHHHHHHHh
Confidence 799999999999999888889999999988864
No 300
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=37.31 E-value=98 Score=19.80 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=16.7
Q ss_pred EEEEEECCeEEEEEE---cCCCHHHHHHHH
Q 030165 151 TVLFFKNGEKKESII---GAVPKSTLSSTL 177 (182)
Q Consensus 151 Tl~~f~~G~~v~~~~---G~~~~~~l~~~l 177 (182)
.|-+.-||+.+.... |..+.+++++.|
T Consensus 42 ~Fev~~~g~~v~sk~~~~~fp~~~~~~~~i 71 (72)
T TIGR02174 42 AFEVTVNGQLVWSKLRGGGFPEPEELKQLI 71 (72)
T ss_pred EEEEEECCEEEEEeccCCCCCCHHHHHHhh
Confidence 355555887775442 455677777665
No 301
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=36.25 E-value=95 Score=22.14 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=22.5
Q ss_pred HHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHH
Q 030165 140 IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTL 177 (182)
Q Consensus 140 l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l 177 (182)
-+-.|||+.+|.++| |++ .-+.|..+-..-...+
T Consensus 76 ~Aw~lGi~k~PAVV~--D~~--~VVYG~~DV~~A~~~~ 109 (113)
T TIGR03757 76 DAWQLGVTKIPAVVV--DRR--YVVYGETDVARALALI 109 (113)
T ss_pred HHHHcCCccCCEEEE--cCC--eEEecCccHHHHHHHH
Confidence 366799999999988 454 3455766654444433
No 302
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=35.80 E-value=1.4e+02 Score=22.59 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=23.9
Q ss_pred EEEEE-ECCeEEEEEEcCCCHHHHHHHHHH
Q 030165 151 TVLFF-KNGEKKESIIGAVPKSTLSSTLDK 179 (182)
Q Consensus 151 Tl~~f-~~G~~v~~~~G~~~~~~l~~~l~~ 179 (182)
+++++ ++|+......|.++++++.+.|+-
T Consensus 127 aiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~L 156 (160)
T PF09695_consen 127 AIIVLDKQGKVQFVKEGALSPAEVQQVIAL 156 (160)
T ss_pred eEEEEcCCccEEEEECCCCCHHHHHHHHHH
Confidence 34555 799999999999999999988864
No 303
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=35.44 E-value=80 Score=24.07 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=23.5
Q ss_pred EEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 151 TVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 151 Tl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
|+++|..|+. ...|+.+.+++.+.+++++
T Consensus 141 t~lIF~sGkv--vitGaks~~~~~~a~~~i~ 169 (174)
T cd00652 141 VLLIFVSGKI--VITGAKSREDIYEAVEKIY 169 (174)
T ss_pred EEEEEcCCEE--EEEecCCHHHHHHHHHHHH
Confidence 6788899987 5668999999998887764
No 304
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=35.02 E-value=39 Score=28.98 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=42.2
Q ss_pred ChhhhhhhHHHHHHHHHh-------cCceEEEEEeCCCC-hHH--HHHcCCC-ccc-EEEEEECCeEEEEE-EcCCCHHH
Q 030165 106 CGPCRMIAPAIEELAKEY-------AGKVACFKLNTDDS-PNI--ATKYGIR-SIP-TVLFFKNGEKKESI-IGAVPKST 172 (182)
Q Consensus 106 C~~C~~~~p~l~~~a~~~-------~~~v~~~~vd~d~~-~~l--~~~~~I~-~iP-Tl~~f~~G~~v~~~-~G~~~~~~ 172 (182)
||.|-.-.=.+.+++++. +..+++..+-+--| +.- -..|||- +-+ ...+|++|+.+.+. ....-.++
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~ 350 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVDE 350 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHHH
Confidence 666655544444444433 23466776666433 222 2457776 444 58899999999998 66666788
Q ss_pred HHHHHHHH
Q 030165 173 LSSTLDKY 180 (182)
Q Consensus 173 l~~~l~~~ 180 (182)
|.+.|+++
T Consensus 351 L~~~I~~~ 358 (359)
T PF04551_consen 351 LIELIEEH 358 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 88877764
No 305
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=34.55 E-value=2.3e+02 Score=22.26 Aligned_cols=76 Identities=22% Similarity=0.418 Sum_probs=47.2
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC------------------hHHHHHcCCCc--ccEEEEEEC
Q 030165 98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS------------------PNIATKYGIRS--IPTVLFFKN 157 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~------------------~~l~~~~~I~~--iPTl~~f~~ 157 (182)
|=+|++-.|..|-.....|.+++++- ++..+...+|-- ...++.++.++ +|-+++ |
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~--~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--n 77 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARP--DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--N 77 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHT--SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--T
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCC--CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--C
Confidence 44688899999999999999999983 466665555421 23556677665 576666 9
Q ss_pred CeEEEEEEcCCCHHHHHHHHHHH
Q 030165 158 GEKKESIIGAVPKSTLSSTLDKY 180 (182)
Q Consensus 158 G~~v~~~~G~~~~~~l~~~l~~~ 180 (182)
|+. ...| .+.+.+...|++.
T Consensus 78 G~~--~~~g-~~~~~~~~ai~~~ 97 (202)
T PF06764_consen 78 GRE--HRVG-SDRAAVEAAIQAA 97 (202)
T ss_dssp TTE--EEET-T-HHHHHHHHHHH
T ss_pred Cee--eeec-cCHHHHHHHHHHh
Confidence 975 3445 5667777777654
No 306
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=34.40 E-value=86 Score=23.98 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=23.8
Q ss_pred EEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 151 TVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 151 Tl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
|+++|..|+. ...|..+.+++...++++.
T Consensus 140 ~~lIF~SGKv--vitGaks~~~~~~a~~~i~ 168 (174)
T cd04518 140 VLLLFSSGKM--VITGAKSEEDAKRAVEKLL 168 (174)
T ss_pred EEEEeCCCEE--EEEecCCHHHHHHHHHHHH
Confidence 7888999987 5568999999998888764
No 307
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=34.20 E-value=54 Score=23.34 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=19.3
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHH
Q 030165 97 VLVEFWAPWCGPCRMIAPAIEELA 120 (182)
Q Consensus 97 vlV~F~a~wC~~C~~~~p~l~~~a 120 (182)
.+..|+.|.|..|+.....|++-.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~g 25 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHG 25 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcC
Confidence 356788999999999988877653
No 308
>PRK00394 transcription factor; Reviewed
Probab=33.74 E-value=89 Score=23.99 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=24.4
Q ss_pred cEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 150 PTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 150 PTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
-|+++|..|+. ...|+.+.+++.+.+++++
T Consensus 140 ~~~lIF~SGKv--vitGaks~~~~~~a~~~i~ 169 (179)
T PRK00394 140 VVVLLFGSGKL--VITGAKSEEDAEKAVEKIL 169 (179)
T ss_pred EEEEEEcCCEE--EEEecCCHHHHHHHHHHHH
Confidence 47889999987 5668999999998887764
No 309
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=33.51 E-value=89 Score=23.83 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=24.2
Q ss_pred cEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 150 PTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 150 PTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
.|+++|.+|+. ...|+.+.+++...+++++
T Consensus 48 ~t~lIf~sGKi--vitGaks~~~~~~a~~~~~ 77 (174)
T cd00652 48 TTALIFSSGKM--VITGAKSEEDAKLAARKYA 77 (174)
T ss_pred EEEEEECCCEE--EEEecCCHHHHHHHHHHHH
Confidence 58999999987 4568889998888887764
No 310
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=33.30 E-value=22 Score=19.80 Aligned_cols=18 Identities=11% Similarity=-0.154 Sum_probs=13.4
Q ss_pred eeeccCCCCcccccCccc
Q 030165 31 KIHLPISNGLNKSNFSFT 48 (182)
Q Consensus 31 ~~~~p~~~~~~~~~~~~~ 48 (182)
.+.||+|...-+++.+..
T Consensus 2 ~i~CP~C~~~f~v~~~~l 19 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDKL 19 (37)
T ss_pred EEECCCCCceEEcCHHHc
Confidence 467888888877777654
No 311
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=32.99 E-value=80 Score=24.11 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=24.1
Q ss_pred cEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 150 PTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 150 PTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
.|+.+|.+|+. ...|..+.++++..+++++
T Consensus 48 ~t~lIF~sGKi--viTGaks~~~~~~a~~~~~ 77 (174)
T cd04517 48 ATASVWSSGKI--TITGATSEEEAKQAARRAA 77 (174)
T ss_pred EEEEEECCCeE--EEEccCCHHHHHHHHHHHH
Confidence 47889999987 4568889999888887664
No 312
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=32.75 E-value=3.8e+02 Score=24.30 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=46.4
Q ss_pred hccCccEEcChhhHHHHHHcCCCcEEEEEEcCCChh------hhhhhHHHHHHHHHhcCceEEEEEeCCCChHH------
Q 030165 73 EAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGP------CRMIAPAIEELAKEYAGKVACFKLNTDDSPNI------ 140 (182)
Q Consensus 73 ~~~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~------C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l------ 140 (182)
...+..-.+++..-+- +..-+++|-|++|.+-=.+ =..+...|+++++. .+++.+-.+|-+..++.
T Consensus 27 lT~~k~ytLS~~T~~~-L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~-s~~i~~~~iDP~~~~~~e~~~~~ 104 (552)
T TIGR03521 27 LTEDKRYTLSPASKEV-VKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAY-NPNIKFRFVNPLEEEDEQGEEIL 104 (552)
T ss_pred cCCCCceecCHHHHHH-HHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCCCcchhhhhHHH
Confidence 3345667777776655 5556788888777653211 12334455555544 34599999998775432
Q ss_pred --HHHcCCCccc
Q 030165 141 --ATKYGIRSIP 150 (182)
Q Consensus 141 --~~~~~I~~iP 150 (182)
+.+|||...+
T Consensus 105 ~~~~~~gi~~~~ 116 (552)
T TIGR03521 105 DSLAQYGIKPAN 116 (552)
T ss_pred HHHHHcCCCcce
Confidence 4458888666
No 313
>PLN00062 TATA-box-binding protein; Provisional
Probab=32.39 E-value=95 Score=23.90 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=23.1
Q ss_pred EEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 151 TVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 151 Tl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
++++|..|+. .+.|+.+.+++.+.++.++
T Consensus 140 ~~liF~sGkv--vitGaks~~~~~~ai~~i~ 168 (179)
T PLN00062 140 VLLIFVSGKI--VITGAKVREEIYTAFENIY 168 (179)
T ss_pred EEEEeCCCEE--EEEecCCHHHHHHHHHHHH
Confidence 6788889987 4568889999998887764
No 314
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=32.35 E-value=95 Score=23.72 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=23.7
Q ss_pred EEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 151 TVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 151 Tl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
|+++|..|+. ...|..+.+++.+.+++++
T Consensus 141 t~lIF~sGki--vitGaks~~~~~~a~~~i~ 169 (174)
T cd04517 141 TLSIFSTGSV--TVTGARSMEDVREAVEKIY 169 (174)
T ss_pred EEEEeCCCEE--EEEecCCHHHHHHHHHHHH
Confidence 6888889977 5668899999999888764
No 315
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=31.91 E-value=77 Score=23.58 Aligned_cols=30 Identities=10% Similarity=0.014 Sum_probs=24.3
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhcCceEE
Q 030165 100 EFWAPWCGPCRMIAPAIEELAKEYAGKVAC 129 (182)
Q Consensus 100 ~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~ 129 (182)
.|+..-||.|-...+.++++.++++-.+.+
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~ 32 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHGATVRY 32 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCeeEE
Confidence 466788999999999999999888644444
No 316
>PRK00394 transcription factor; Reviewed
Probab=31.67 E-value=99 Score=23.74 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=25.1
Q ss_pred cEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 150 PTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 150 PTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
.|+++|..|+. ...|+.+.+++...+++++
T Consensus 47 ~t~lIf~sGKi--v~tGa~S~~~a~~a~~~~~ 76 (179)
T PRK00394 47 IAALIFRSGKV--VCTGAKSVEDLHEAVKIII 76 (179)
T ss_pred eEEEEEcCCcE--EEEccCCHHHHHHHHHHHH
Confidence 68999999987 4568999999998888764
No 317
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=31.50 E-value=1e+02 Score=23.56 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=23.0
Q ss_pred EEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 151 TVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 151 Tl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
|+++|..|+. ...|+.+.++....+++++
T Consensus 49 t~lIF~SGKi--viTGaks~e~a~~a~~~i~ 77 (174)
T cd04516 49 TALIFSSGKM--VCTGAKSEDDSKLAARKYA 77 (174)
T ss_pred EEEEECCCeE--EEEecCCHHHHHHHHHHHH
Confidence 6889999987 4568899998887777654
No 318
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=31.07 E-value=1e+02 Score=23.55 Aligned_cols=29 Identities=17% Similarity=0.413 Sum_probs=23.0
Q ss_pred EEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 151 TVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 151 Tl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
++++|..|+. .+.|..+.+++.+.++.++
T Consensus 140 ~~liF~sGkv--vitGaks~~~~~~a~~~i~ 168 (174)
T cd04516 140 VLLIFVSGKI--VLTGAKSREEIYQAFENIY 168 (174)
T ss_pred EEEEeCCCEE--EEEecCCHHHHHHHHHHHH
Confidence 4778889987 5568889999998887764
No 319
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.64 E-value=56 Score=24.67 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=23.9
Q ss_pred cChhhHHHHHHcCCCcEEEEEEcCCChhhhhh
Q 030165 81 VTDSSWENLVISSENPVLVEFWAPWCGPCRMI 112 (182)
Q Consensus 81 l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~ 112 (182)
++-++..+.+.+.++|+++.|..-|=-+=..|
T Consensus 120 isy~~lr~~I~e~dkp~LilfGTGwGlpde~m 151 (190)
T COG4752 120 ISYSWLRNEIQERDKPWLILFGTGWGLPDELM 151 (190)
T ss_pred ccHHHHHHHHhhcCCcEEEEecCCCCCCHHHH
Confidence 34455667677899999999999997664433
No 320
>PLN00062 TATA-box-binding protein; Provisional
Probab=30.09 E-value=1.1e+02 Score=23.57 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=23.9
Q ss_pred cEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 150 PTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 150 PTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
.|+++|..|+. ...|+.+.+++...+++++
T Consensus 48 ~t~lIF~SGKi--viTGaks~e~a~~a~~~~~ 77 (179)
T PLN00062 48 TTALIFASGKM--VCTGAKSEHDSKLAARKYA 77 (179)
T ss_pred EEEEEECCCeE--EEEecCCHHHHHHHHHHHH
Confidence 48899999987 4568889988888777664
No 321
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=29.35 E-value=97 Score=23.68 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=24.4
Q ss_pred cEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 150 PTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 150 PTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
.|+++|..|+. ...|+.+.++....+++++
T Consensus 48 ~t~lIF~SGKi--v~tGaks~~~a~~a~~~~~ 77 (174)
T cd04518 48 IAALIFRSGKM--VCTGAKSVEDLHRAVKEII 77 (174)
T ss_pred EEEEEECCCeE--EEEccCCHHHHHHHHHHHH
Confidence 58899999987 4568999998888887764
No 322
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=28.93 E-value=1.3e+02 Score=18.44 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=32.4
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC-ChHHHHHcCCCcccEEEEEECCe
Q 030165 100 EFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD-SPNIATKYGIRSIPTVLFFKNGE 159 (182)
Q Consensus 100 ~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~-~~~l~~~~~I~~iPTl~~f~~G~ 159 (182)
.|+.+.|++|.+..-.++... ..-.+..+.+|... .+++.+...-..+|++.. .+|.
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~--~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~ 60 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETG--LGDDVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGE 60 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhC--CCCCcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCC
Confidence 467888999987776555521 11124444555333 344445455678998754 2553
No 323
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=28.61 E-value=1.1e+02 Score=23.71 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=24.1
Q ss_pred EEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 151 TVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 151 Tl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
++++|+.||.+ ..|+.+.+++...+++++
T Consensus 55 a~LIF~SGK~V--cTGaKs~ed~~~av~~~~ 83 (185)
T COG2101 55 AALIFRSGKVV--CTGAKSVEDVHRAVKKLA 83 (185)
T ss_pred eEEEEecCcEE--EeccCcHHHHHHHHHHHH
Confidence 67888999874 569999999999888775
No 324
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=28.56 E-value=2.6e+02 Score=23.78 Aligned_cols=83 Identities=11% Similarity=-0.012 Sum_probs=54.5
Q ss_pred CcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHH
Q 030165 95 NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLS 174 (182)
Q Consensus 95 ~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~ 174 (182)
+-.+|.++.....+-+.+...+.+++++..-.++. .+...-...-+-.+.-.++||+.+=-.-+.++......+.++++
T Consensus 250 ~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~I~~Q~-~~~~gGtDa~~~~~~~~Gvpt~~i~ip~Ry~Hs~~e~i~~~D~~ 328 (350)
T TIGR03107 250 EGTLLRFFDPGHIMLPRMKDFLLTTAEEAGIKYQY-YVAKGGTDAGAAHLKNSGVPSTTIGVCARYIHSHQTLYSIDDFL 328 (350)
T ss_pred CCceEEEecCCCCCCHHHHHHHHHHHHHcCCCcEE-ecCCCCchHHHHHHhCCCCcEEEEccCcccccChhheeeHHHHH
Confidence 33444577777888888999999999998755665 22211111122256678999998876666666666666777776
Q ss_pred HHHH
Q 030165 175 STLD 178 (182)
Q Consensus 175 ~~l~ 178 (182)
+.++
T Consensus 329 ~~~~ 332 (350)
T TIGR03107 329 AAQA 332 (350)
T ss_pred HHHH
Confidence 6554
No 325
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=27.34 E-value=3.9e+02 Score=22.79 Aligned_cols=97 Identities=14% Similarity=0.135 Sum_probs=57.4
Q ss_pred cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCC--Ccc
Q 030165 75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTDDSPNIATKYGI--RSI 149 (182)
Q Consensus 75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d~~~~l~~~~~I--~~i 149 (182)
..-|.++|=++.++ +...+.|.+|+|+.+.-....+. .-..+++++.+ .+.++..|.+.-..-...+|- .-.
T Consensus 209 vpLVREiTFeN~EE-LtEEGlPflILf~~kdD~~s~k~--F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgKs~~DL 285 (375)
T KOG0912|consen 209 VPLVREITFENAEE-LTEEGLPFLILFRKKDDKESEKI--FKNAIARELDDETLAINFLTADGKVFKHPLRHLGKSPDDL 285 (375)
T ss_pred hhhhhhhhhccHHH-HhhcCCceEEEEecCCcccHHHH--HHHHHHHHhhhhhhccceeecCcceecchHHHhCCCcccC
Confidence 46678889888888 56789999999998765443221 12334444433 277777777654444444442 234
Q ss_pred cEE--------EEEECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165 150 PTV--------LFFKNGEKKESIIGAVPKSTLSSTLDKY 180 (182)
Q Consensus 150 PTl--------~~f~~G~~v~~~~G~~~~~~l~~~l~~~ 180 (182)
|.+ .+|.+++.+ ..+..|++|+..+
T Consensus 286 PviaIDsF~Hmylfp~f~di------~~pGkLkqFv~DL 318 (375)
T KOG0912|consen 286 PVIAIDSFRHMYLFPDFNDI------NIPGKLKQFVADL 318 (375)
T ss_pred cEEEeeccceeeecCchhhh------cCccHHHHHHHHH
Confidence 544 444444332 3344677777654
No 326
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=26.80 E-value=67 Score=22.38 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=21.6
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC
Q 030165 99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD 135 (182)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d 135 (182)
..|+.+.|..|++....|++- ++.+..+|.-
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~ 32 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA------GIEPEIVEYL 32 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEecc
Confidence 468899999999987666654 2445555553
No 327
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=26.80 E-value=66 Score=24.99 Aligned_cols=27 Identities=19% Similarity=0.453 Sum_probs=14.6
Q ss_pred EcChhhHHHHHHcCCCcEEEEEEcCCC
Q 030165 80 VVTDSSWENLVISSENPVLVEFWAPWC 106 (182)
Q Consensus 80 ~l~~~~~~~~~~~~~~~vlV~F~a~wC 106 (182)
.++-+++.+.+.+.++|+++.|.+-|=
T Consensus 118 ~is~~~lr~~l~~~~~P~LllFGTGwG 144 (185)
T PF09936_consen 118 TISYAELRRMLEEEDRPVLLLFGTGWG 144 (185)
T ss_dssp -B-HHHHHHHHHH--S-EEEEE--TT-
T ss_pred CcCHHHHHHHHhccCCeEEEEecCCCC
Confidence 345556667666789999999999984
No 328
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=26.21 E-value=2.1e+02 Score=19.30 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=39.5
Q ss_pred cCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHH-cCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165 103 APWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATK-YGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY 180 (182)
Q Consensus 103 a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~-~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~ 180 (182)
..+|++|+...=.+++. .-...+..+|.++.++-..+ --...+|++. .+|..+ .+...+.++|++.
T Consensus 19 ~g~cpf~~rvrl~L~eK----gi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i------~eS~~I~eYLde~ 85 (91)
T cd03061 19 IGNCPFCQRLFMVLWLK----GVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVK------TDNNKIEEFLEET 85 (91)
T ss_pred CCCChhHHHHHHHHHHC----CCceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEe------cCHHHHHHHHHHH
Confidence 35799998887666554 12245566776665554444 4467899665 355322 3455667777654
No 329
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=26.17 E-value=1.5e+02 Score=19.67 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=22.5
Q ss_pred HHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165 139 NIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY 180 (182)
Q Consensus 139 ~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~ 180 (182)
.+|.++||.++ +.=..||.......| +.++++++++.+
T Consensus 25 ~~A~~~gl~G~--V~N~~dg~V~i~~~G--~~~~l~~f~~~l 62 (91)
T PF00708_consen 25 RIARKLGLTGW--VRNLPDGSVEIEAEG--EEEQLEEFIKWL 62 (91)
T ss_dssp HHHHHTT-EEE--EEE-TTSEEEEEEEE--EHHHHHHHHHHH
T ss_pred HHHHHhCCceE--EEECCCCEEEEEEEe--CHHHHHHHHHHH
Confidence 57788888887 333357766666666 555566555543
No 330
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=25.84 E-value=1.7e+02 Score=18.02 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=38.5
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCC--CcccEEEEEECCeEEEEEEcCCCHHHHHHHH
Q 030165 100 EFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGI--RSIPTVLFFKNGEKKESIIGAVPKSTLSSTL 177 (182)
Q Consensus 100 ~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I--~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l 177 (182)
.++.+.|++|++..-.++...-. .....++.........+.+- ..+|++.. +|.. ......+.++|
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~----~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~~~~------l~eS~aI~~yL 70 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVP----YEYVEEDLGNKSELLLASNPVHKKIPVLLH--NGKP------ICESLIIVEYI 70 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCC----CEEEEeCcccCCHHHHHhCCCCCCCCEEEE--CCEE------eehHHHHHHHH
Confidence 46678899999888776665322 34444554433333334443 68998863 5532 22344566666
Q ss_pred HH
Q 030165 178 DK 179 (182)
Q Consensus 178 ~~ 179 (182)
++
T Consensus 71 ~~ 72 (74)
T cd03058 71 DE 72 (74)
T ss_pred Hh
Confidence 54
No 331
>PF04267 SoxD: Sarcosine oxidase, delta subunit family ; InterPro: IPR006279 These sequences represent the delta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Rhizobium loti (Mesorhizobium loti) and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate []. Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process; PDB: 3AD7_D 1X31_D 1VRQ_D 3AD8_D 3ADA_D 3AD9_D 2GAG_D 2GAH_D.
Probab=25.13 E-value=67 Score=21.63 Aligned_cols=31 Identities=26% Similarity=0.551 Sum_probs=17.9
Q ss_pred ccEEcChhhHHHHHH--cCCCcEEEEEE--cCCCh
Q 030165 77 EVQVVTDSSWENLVI--SSENPVLVEFW--APWCG 107 (182)
Q Consensus 77 ~v~~l~~~~~~~~~~--~~~~~vlV~F~--a~wC~ 107 (182)
....+++++|.+.+- ++.+-+.-..| +..|+
T Consensus 28 ~~~~~sd~~w~~ylf~R~Np~G~~~E~W~H~~GC~ 62 (84)
T PF04267_consen 28 DPASVSDEEWADYLFLRDNPAGVHRERWYHAAGCR 62 (84)
T ss_dssp -GGGS-HHHHHHHHH-----SSEEEEEEE-TTTT-
T ss_pred CCCcCCHHHHHHHHhcCCCCCcceeEEEEeCCCCc
Confidence 345578899998764 45566888887 55564
No 332
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=24.91 E-value=2.6e+02 Score=19.90 Aligned_cols=90 Identities=12% Similarity=0.192 Sum_probs=51.8
Q ss_pred cCCCcEEEEEEc-CCChhhhhhhHHHHHHHHHh----cCc------eEEEEEeCCCChHHHHHcCCC-cccEEEEEE---
Q 030165 92 SSENPVLVEFWA-PWCGPCRMIAPAIEELAKEY----AGK------VACFKLNTDDSPNIATKYGIR-SIPTVLFFK--- 156 (182)
Q Consensus 92 ~~~~~vlV~F~a-~wC~~C~~~~p~l~~~a~~~----~~~------v~~~~vd~d~~~~l~~~~~I~-~iPTl~~f~--- 156 (182)
-+..|.+|.|.. ..=|.-...++.|+.+++++ ..+ +-|+..|-+-...+..-.|.. ..|-++++.
T Consensus 12 Ln~~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~nL~d~~P~LviLDip~ 91 (116)
T cd03071 12 LNEGPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNLPEAAPLLTILDMSA 91 (116)
T ss_pred hcCCceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcCCCccCceEEEEeccc
Confidence 356788888883 33445566666666666544 221 333333333333444444654 578888884
Q ss_pred CCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165 157 NGEKKESIIGAVPKSTLSSTLDKYVE 182 (182)
Q Consensus 157 ~G~~v~~~~G~~~~~~l~~~l~~~l~ 182 (182)
.++-+-. .-..+.+.+.+++.++++
T Consensus 92 r~~~v~~-~eeIT~e~~~~fv~~ylA 116 (116)
T cd03071 92 RAKYVMD-VEEITPAIVEAFVSDFLA 116 (116)
T ss_pred cceEeCc-hHhcCHHHHHHHHHHhhC
Confidence 2322222 245788999999998874
No 333
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=24.89 E-value=75 Score=22.20 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=22.6
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC
Q 030165 99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136 (182)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~ 136 (182)
..|+.+.|..|++....|++- ++.+..+|..+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~ 33 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK------GIEPEVVKYLK 33 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccC
Confidence 468899999999988877764 24555555543
No 334
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=22.46 E-value=17 Score=20.49 Aligned_cols=12 Identities=17% Similarity=0.623 Sum_probs=9.5
Q ss_pred CCHHHHHHHHHH
Q 030165 168 VPKSTLSSTLDK 179 (182)
Q Consensus 168 ~~~~~l~~~l~~ 179 (182)
.+.+++.+|+++
T Consensus 38 ~~~~~l~~~~~~ 49 (49)
T TIGR01764 38 IPREDVDEYLEQ 49 (49)
T ss_pred EeHHHHHHHHhC
Confidence 478889999864
No 335
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=22.24 E-value=3.8e+02 Score=20.87 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=33.7
Q ss_pred CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhc---CceEEEEEeC--------------------------CCChHHHH
Q 030165 93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYA---GKVACFKLNT--------------------------DDSPNIAT 142 (182)
Q Consensus 93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~---~~v~~~~vd~--------------------------d~~~~l~~ 142 (182)
.++.|++.|| -++---|-..--.|.+.+.++. -.|..+.+|. |.+.++++
T Consensus 32 ~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Isr 111 (196)
T KOG0852|consen 32 KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISR 111 (196)
T ss_pred cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhHH
Confidence 4688898888 3443333333344555554443 2344444443 55668999
Q ss_pred HcCC----Cccc
Q 030165 143 KYGI----RSIP 150 (182)
Q Consensus 143 ~~~I----~~iP 150 (182)
+||| .+++
T Consensus 112 dyGvL~~~~G~~ 123 (196)
T KOG0852|consen 112 DYGVLKEDEGIA 123 (196)
T ss_pred hcCceecCCCcc
Confidence 9998 3666
No 336
>PRK10853 putative reductase; Provisional
Probab=22.10 E-value=1e+02 Score=21.84 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=18.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHH
Q 030165 98 LVEFWAPWCGPCRMIAPAIEEL 119 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~ 119 (182)
+..|+-+.|..|++....|++-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~ 23 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ 23 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc
Confidence 4567889999999998888754
No 337
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=22.07 E-value=2.2e+02 Score=21.29 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=35.3
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCC
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTD 135 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d 135 (182)
+++-+.+.++++..+.|.-+.-.++.+++.+.+ ++.+-.++..
T Consensus 126 ~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 126 DDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp ETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 456788889999999999999999999999987 6666665543
No 338
>PRK09864 putative peptidase; Provisional
Probab=22.06 E-value=5.1e+02 Score=22.20 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=54.1
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHH
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKST 172 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~ 172 (182)
.+.|++ .++......-+.+...+.++|+++.=.++.-.....-...-+-++.-.++||.++=---+-++......+.++
T Consensus 248 G~Gp~i-~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~~ggTDa~~i~~~~~Gvpt~~isiP~RY~Hs~~e~~~~~D 326 (356)
T PRK09864 248 GQGPGL-MLFDKRYFPNQKLVAALKSCAAHNDLPLQFSTMKTGATDGGRYNVMGGGRPVVALCLPTRYLHANSGMISKAD 326 (356)
T ss_pred CCCCeE-EEccCCccCCHHHHHHHHHHHHHcCCCceEEEcCCCCchHHHHHHhCCCCcEEEEeeccCcCCCcceEeEHHH
Confidence 444555 4556667777788889999999876545543222112222223445568999988866666676667677777
Q ss_pred HHHHHH
Q 030165 173 LSSTLD 178 (182)
Q Consensus 173 l~~~l~ 178 (182)
+++.++
T Consensus 327 ~e~~~~ 332 (356)
T PRK09864 327 YDALLT 332 (356)
T ss_pred HHHHHH
Confidence 776654
No 339
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=22.05 E-value=2.9e+02 Score=22.27 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=35.3
Q ss_pred ChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEE
Q 030165 106 CGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKES 163 (182)
Q Consensus 106 C~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~ 163 (182)
=.+|..+...++.+++++..-+.++--|+.- |..|. =.++-+|||+.+.+
T Consensus 168 mkHsv~iMk~Lrrla~el~KtiviVlHDINf----AS~Ys----D~IVAlK~G~vv~~ 217 (252)
T COG4604 168 MKHSVQIMKILRRLADELGKTIVVVLHDINF----ASCYS----DHIVALKNGKVVKQ 217 (252)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEEecccH----HHhhh----hheeeecCCEEEec
Confidence 5789999999999999998766655555543 22221 13677799988765
No 340
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=22.00 E-value=96 Score=20.84 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=21.9
Q ss_pred EEcCC---Chhh--hhhhHHHH---HHHHHhcCc-eEEEEEeCC
Q 030165 101 FWAPW---CGPC--RMIAPAIE---ELAKEYAGK-VACFKLNTD 135 (182)
Q Consensus 101 F~a~w---C~~C--~~~~p~l~---~~a~~~~~~-v~~~~vd~d 135 (182)
||..| |..| +....++. +-.++|++. |+++.+|..
T Consensus 28 ywt~w~lp~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D~~ 71 (84)
T cd00307 28 FRTSSWQSCGPIEGRSEAQVLAALEACLAEHPGEYVRLIGIDPK 71 (84)
T ss_pred cHhhhcCCCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC
Confidence 55555 6777 55555554 445667654 788888765
No 341
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=21.97 E-value=4e+02 Score=20.99 Aligned_cols=39 Identities=10% Similarity=0.138 Sum_probs=27.1
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC
Q 030165 93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD 135 (182)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d 135 (182)
.....+.+|....|+.|......+.. -...+.+|.|+.+
T Consensus 107 ~~~~rlalFvkd~C~~C~~~~~~l~a----~~~~~Diylvgs~ 145 (200)
T TIGR03759 107 QGGGRLALFVKDDCVACDARVQRLLA----DNAPLDLYLVGSQ 145 (200)
T ss_pred CCCCeEEEEeCCCChHHHHHHHHHhc----CCCceeEEEecCC
Confidence 45567888999999999887765522 1234788888743
No 342
>PF05626 DUF790: Protein of unknown function (DUF790); InterPro: IPR008508 This family consists of several hypothetical bacterial and archaeal proteins whose functions have not been experimentally verified. Computational analysis of sequence, predicted structure and genomic context suggests that these proteins may be endonucleases involved in either restriction-modification and/or DNA excision repair [].
Probab=21.87 E-value=2e+02 Score=25.03 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=28.8
Q ss_pred CcccEEEEEECCeEEE-EEEcCCCHHHHHHHHHHH
Q 030165 147 RSIPTVLFFKNGEKKE-SIIGAVPKSTLSSTLDKY 180 (182)
Q Consensus 147 ~~iPTl~~f~~G~~v~-~~~G~~~~~~l~~~l~~~ 180 (182)
--||-+.+-++|+.+. .+.|..+++.+..-++++
T Consensus 301 v~IPDF~~~~~g~~vylEIvGfWtpeYL~rKl~kl 335 (379)
T PF05626_consen 301 VMIPDFRFEHDGRRVYLEIVGFWTPEYLERKLEKL 335 (379)
T ss_pred EEccceeEEECCEEEEEEEecCCCHHHHHHHHHHH
Confidence 3589999889887765 778999999999999886
No 343
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=21.85 E-value=1.3e+02 Score=21.69 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=17.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHH
Q 030165 98 LVEFWAPWCGPCRMIAPAIEEL 119 (182)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~~ 119 (182)
+..|+-+.|..|++....|++-
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 4567889999999988877654
No 344
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=21.74 E-value=2.1e+02 Score=17.66 Aligned_cols=55 Identities=7% Similarity=0.103 Sum_probs=33.9
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC----ChHHHHHcCCCcccEEEEEECCe
Q 030165 99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD----SPNIATKYGIRSIPTVLFFKNGE 159 (182)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~----~~~l~~~~~I~~iPTl~~f~~G~ 159 (182)
..|+.+.+++|+...-.+++..-. .....++..+ .+++.+......+|++.. +|.
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~g~~----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~ 60 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLNKIP----FEECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDF 60 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHcCCC----cEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCE
Confidence 356778899998887666655332 3444555432 235555566778999863 553
No 345
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=21.50 E-value=1.3e+02 Score=19.97 Aligned_cols=23 Identities=9% Similarity=0.241 Sum_probs=18.8
Q ss_pred HHHHcCCCcccEEEEEECCeEEE
Q 030165 140 IATKYGIRSIPTVLFFKNGEKKE 162 (182)
Q Consensus 140 l~~~~~I~~iPTl~~f~~G~~v~ 162 (182)
.++.+++...+++++..||.+++
T Consensus 30 ~~~~l~l~~~~~lvL~eDGT~Vd 52 (79)
T cd06538 30 VLDALLLDCISSLVLDEDGTGVD 52 (79)
T ss_pred HHHHcCCCCccEEEEecCCcEEc
Confidence 46778997777899999998875
No 346
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=21.41 E-value=81 Score=28.91 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=34.8
Q ss_pred CCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165 134 TDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181 (182)
Q Consensus 134 ~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l 181 (182)
.+++..+++ ++++..|+.++|+||+...-.....+.+...+.|+++|
T Consensus 223 d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~l 269 (606)
T KOG1731|consen 223 DTQNFPLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLL 269 (606)
T ss_pred cchhccccc-cCCCCchhhhhhcCCcccccccccccHHHHHHHHHHHh
Confidence 344445566 89999999999999988766666666766777776665
No 347
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=21.00 E-value=1.1e+02 Score=20.42 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=18.8
Q ss_pred HHHHcCCCcccEEEEEECCeEEE
Q 030165 140 IATKYGIRSIPTVLFFKNGEKKE 162 (182)
Q Consensus 140 l~~~~~I~~iPTl~~f~~G~~v~ 162 (182)
.++.+++...+++++..||.+++
T Consensus 30 ~~~~L~~~~~~~lvLeeDGT~Vd 52 (81)
T cd06537 30 ALETLLLSGVLTLVLEEDGTAVD 52 (81)
T ss_pred HHHHhCCCCceEEEEecCCCEEc
Confidence 45668888778999999999885
No 348
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism]
Probab=20.87 E-value=58 Score=24.99 Aligned_cols=18 Identities=33% Similarity=0.778 Sum_probs=14.1
Q ss_pred EEcCCChhhhhhhHHHHHH
Q 030165 101 FWAPWCGPCRMIAPAIEEL 119 (182)
Q Consensus 101 F~a~wC~~C~~~~p~l~~~ 119 (182)
|.+| ||.|+++...|.+.
T Consensus 101 f~tP-CG~CRQfl~Ef~~~ 118 (173)
T KOG0833|consen 101 FTTP-CGVCRQFLREFGNA 118 (173)
T ss_pred cCCC-cHHHHHHHHHHhhc
Confidence 5666 99999998777654
No 349
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=20.80 E-value=83 Score=22.13 Aligned_cols=37 Identities=19% Similarity=0.452 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165 114 PAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF 154 (182)
Q Consensus 114 p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~ 154 (182)
..++++.+..++ +.+.-++ ..++++++|++.+|.++-
T Consensus 63 ~~l~~Lr~lapg-l~l~P~s---gddLa~rL~l~hYPvLit 99 (105)
T TIGR03765 63 AALQRLRALAPG-LPLLPVS---GDDLAERLGLRHYPVLIT 99 (105)
T ss_pred HHHHHHHHHcCC-CcccCCC---HHHHHHHhCCCcccEEEe
Confidence 345555554443 4444333 446999999999998753
No 350
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=20.75 E-value=2.1e+02 Score=20.59 Aligned_cols=58 Identities=26% Similarity=0.407 Sum_probs=37.1
Q ss_pred CCChhhhhhhHHHHHHHHHhcC-------ceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEc
Q 030165 104 PWCGPCRMIAPAIEELAKEYAG-------KVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 166 (182)
Q Consensus 104 ~wC~~C~~~~p~l~~~a~~~~~-------~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G 166 (182)
..|..|..-...+.++.+++.. .+.+-++..+. .+++.+| -+-|++.+ ||+.+..+.|
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~-~~~~~~~--~~S~~I~i--nG~piE~~l~ 77 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDE-EEFARQP--LESPTIRI--NGRPIEDLLG 77 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECCh-HHHhhcc--cCCCeeeE--CCEehhHhhC
Confidence 3799998887777666655432 25555665555 4566666 56677766 7877654443
No 351
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=20.71 E-value=91 Score=23.16 Aligned_cols=36 Identities=17% Similarity=0.433 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165 115 AIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF 154 (182)
Q Consensus 115 ~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~ 154 (182)
.++.+.+..++ +.+.-++ ..+++++++++.+|.++-
T Consensus 102 ~L~~Lr~lapg-l~l~P~s---gddLA~rL~l~HYPvLIt 137 (142)
T PF11072_consen 102 ALQRLRQLAPG-LPLLPVS---GDDLARRLGLSHYPVLIT 137 (142)
T ss_pred HHHHHHHHcCC-CeecCCC---HHHHHHHhCCCcccEEee
Confidence 44444444333 4444333 346999999999998753
No 352
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=20.56 E-value=6.2e+02 Score=22.65 Aligned_cols=71 Identities=23% Similarity=0.452 Sum_probs=42.4
Q ss_pred hHHHHHHcCC---CcEEEEEEcCC-ChhhhhhhHHHHHHHHHhcC-ceEEEEEe-CCCChHHHHHcCCCccc--EEEEE
Q 030165 85 SWENLVISSE---NPVLVEFWAPW-CGPCRMIAPAIEELAKEYAG-KVACFKLN-TDDSPNIATKYGIRSIP--TVLFF 155 (182)
Q Consensus 85 ~~~~~~~~~~---~~vlV~F~a~w-C~~C~~~~p~l~~~a~~~~~-~v~~~~vd-~d~~~~l~~~~~I~~iP--Tl~~f 155 (182)
+|++..+..+ ..+||+|+.+- ...=..+...++++.++++. ++.++.+. ..-....+-+.|++.++ +++||
T Consensus 269 ~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~~~d~L~f~ 347 (499)
T PF05679_consen 269 NFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKFPPDSLLFF 347 (499)
T ss_pred HHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccCCCCcEEEE
Confidence 5555434333 34788888743 33223355567777777743 47777777 44555667777777666 46555
No 353
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=20.45 E-value=2.2e+02 Score=17.39 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=31.8
Q ss_pred CCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHH
Q 030165 104 PWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 179 (182)
Q Consensus 104 ~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~ 179 (182)
++|++|++..-.++.. ++.+-.++++... .-.-..+|++.. +|+.+ .....+.++|++
T Consensus 14 s~sp~~~~v~~~L~~~------~i~~~~~~~~~~~----~~p~g~vP~l~~--~g~~l------~es~~I~~yL~~ 71 (72)
T cd03054 14 SLSPECLKVETYLRMA------GIPYEVVFSSNPW----RSPTGKLPFLEL--NGEKI------ADSEKIIEYLKK 71 (72)
T ss_pred CCCHHHHHHHHHHHhC------CCceEEEecCCcc----cCCCcccCEEEE--CCEEE------cCHHHHHHHHhh
Confidence 5899999888777663 2333334443321 112347898864 55322 223556666653
No 354
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=20.28 E-value=65 Score=27.49 Aligned_cols=75 Identities=16% Similarity=0.318 Sum_probs=39.3
Q ss_pred cCCChhhhhh-hHHHHHHHHHhc---CceEEEEEeCCCC-h--HHHHHcCCCcc--cEEEEEECCeEEEEEEcCCCHHHH
Q 030165 103 APWCGPCRMI-APAIEELAKEYA---GKVACFKLNTDDS-P--NIATKYGIRSI--PTVLFFKNGEKKESIIGAVPKSTL 173 (182)
Q Consensus 103 a~wC~~C~~~-~p~l~~~a~~~~---~~v~~~~vd~d~~-~--~l~~~~~I~~i--PTl~~f~~G~~v~~~~G~~~~~~l 173 (182)
=|.|+-|.-- ....+++.+.+. ..+++..+-+.-| + .--.++||-+- -..++|++|+.+.++ +.+++
T Consensus 262 CPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv----~~~~~ 337 (346)
T TIGR00612 262 CPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQ----PETDM 337 (346)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEec----CHHHH
Confidence 3555555422 233344444443 3356655544322 2 12345777654 368889999887765 44555
Q ss_pred HHHHHHHh
Q 030165 174 SSTLDKYV 181 (182)
Q Consensus 174 ~~~l~~~l 181 (182)
.+.+.+.+
T Consensus 338 ~~~l~~~i 345 (346)
T TIGR00612 338 ADELIRLI 345 (346)
T ss_pred HHHHHHhc
Confidence 55554443
Done!