BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030166
         (182 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WPT|A Chain A, The Crystal Structure Of Im2 In Complex With Colicin E9
           Dnase
          Length = 86

 Score = 28.9 bits (63), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 114 DSIHVRRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRIKNW-VPPGRTLF 165
           D+  VR  +RL    D  G D   +P  DR+  PE I+  IK W    G++ F
Sbjct: 33  DNKLVREFERLTEHPD--GSDLIYYPRDDREDSPEGIVKEIKEWRAANGKSGF 83


>pdb|3U43|A Chain A, Crystal Structure Of The Colicin E2 Dnase-Im2 Complex
          Length = 94

 Score = 28.9 bits (63), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 114 DSIHVRRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRIKNW-VPPGRTLF 165
           D+  VR  +RL    D  G D   +P  DR+  PE I+  IK W    G++ F
Sbjct: 33  DNKLVREFERLTEHPD--GSDLIYYPRDDREDSPEGIVKEIKEWRAANGKSGF 83


>pdb|2NO8|A Chain A, Nmr Structure Analysis Of The Colicin Immuntiy Protein Im2
          Length = 86

 Score = 28.9 bits (63), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 114 DSIHVRRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRIKNW-VPPGRTLF 165
           D+  VR  +RL    D  G D   +P  DR+  PE I+  IK W    G++ F
Sbjct: 33  DNKLVREFERLTEHPD--GSDLIYYPRDDREDSPEGIVKEIKEWRAANGKSGF 83


>pdb|1UJZ|A Chain A, Crystal Structure Of The E7_cIM7_C COMPLEX; A
           Computationally Designed Interface Between The Colicin
           E7 Dnase And The Im7 Immunity Protein
          Length = 87

 Score = 28.1 bits (61), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 132 GVDRSLFPHLDRDTRPEAILCRIKNW 157
           G D   +P  +RD  PE I+  IK W
Sbjct: 50  GTDLIYYPSDNRDDSPEGIVKEIKEW 75


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,243,133
Number of Sequences: 62578
Number of extensions: 192830
Number of successful extensions: 527
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 525
Number of HSP's gapped (non-prelim): 5
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)