BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030166
         (182 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6GQ37|NDUF7_XENLA NADH dehydrogenase [ubiquinone] complex I, assembly factor 7
           OS=Xenopus laevis GN=ndufaf7 PE=2 SV=1
          Length = 437

 Score = 42.4 bits (98), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 4/100 (4%)

Query: 17  ILDNSKIWYHVLMTSMKLGARGVAHVEGVS-RVNLNDNR-RYSNLLLINRTASPLSWFME 74
           +LD+  I  H++  S KL       + G S  V L+ N   Y N   I +T  P+ W+ +
Sbjct: 147 LLDSCDISVHLVEVSPKLSDIQAQRLTGKSIEVELDSNSPVYKNG--ITKTGRPVCWYQD 204

Query: 75  CKDRKNHSALMLPHSFLPSMAAEKLRDAADKIKALLVDYD 114
            +D  N  +  + H F  ++   KL+   D  + +L+D D
Sbjct: 205 IQDVPNGYSFYIAHEFFDALPIHKLQKIKDGWREMLIDID 244


>sp|Q5BKM6|NDUF7_XENTR NADH dehydrogenase [ubiquinone] complex I, assembly factor 7
           OS=Xenopus tropicalis GN=ndufaf7 PE=2 SV=1
          Length = 430

 Score = 35.4 bits (80), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 13/53 (24%), Positives = 26/53 (49%)

Query: 62  INRTASPLSWFMECKDRKNHSALMLPHSFLPSMAAEKLRDAADKIKALLVDYD 114
           I +T  P+ W+ + +D     +  + H F  ++   KL+   D  + +L+D D
Sbjct: 189 ITKTGFPVCWYQDIQDVPTGFSFYIAHEFFDALPIHKLQKTKDGWREILIDID 241


>sp|Q9CWG8|NDUF7_MOUSE NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Mus
           musculus GN=Ndufaf7 PE=2 SV=4
          Length = 436

 Score = 31.2 bits (69), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 62  INRTASPLSWFMECKDRKNHSALMLPHSFLPSMAAEKLRDAADKIKALLVDYD 114
           + ++  P+SW+ + KD     +L L H F   +   K +      + + VD D
Sbjct: 184 VTKSGIPVSWYRDLKDVPEGYSLYLAHEFFDVLPVHKFQKTPRGWREVFVDVD 236


>sp|Q2KHV5|NDUF7_BOVIN NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Bos
           taurus GN=NDUFAF7 PE=2 SV=2
          Length = 441

 Score = 30.8 bits (68), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 62  INRTASPLSWFMECKDRKNHSALMLPHSFLPSMAAEKLRDAADKIKALLVDYD 114
           + ++  P+SW+ + +D     +  L H F   +   K +      + +LVD D
Sbjct: 189 VTKSGIPVSWYRDLQDVPKEYSFYLAHEFFDVLPVHKFQKTPHGWREVLVDID 241


>sp|Q8YRI9|MINE_NOSS1 Cell division topological specificity factor OS=Nostoc sp. (strain
           PCC 7120 / UTEX 2576) GN=minE PE=3 SV=1
          Length = 97

 Score = 30.8 bits (68), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 117 HVRRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRIKNWVPPGRTLFIASNERTPGFF 176
           HV+R  +L    DR G+D      + ++     I+CR     P G    + SN+RT    
Sbjct: 20  HVKRRLQLVIAHDRAGLDPETLEKMRKEIL--DIVCRYVEVEPDGLEFALESNQRTTALI 77

Query: 177 SPLAVR 182
           + L +R
Sbjct: 78  ANLPIR 83


>sp|Q892B2|SYD_CLOTE Aspartate--tRNA ligase OS=Clostridium tetani (strain Massachusetts
           / E88) GN=aspS PE=3 SV=1
          Length = 592

 Score = 30.4 bits (67), Expect = 6.0,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 3/101 (2%)

Query: 79  KNHSALMLPHSFLPSMAAEKLRDAADKIKALLVDYDSIHVRRGDRLKTRKDRYGVDRSLF 138
           +  S  +L  S  P +  ++  DAA+ I+   + Y  + +RR D  K  K R+   +++ 
Sbjct: 102 QGESIKILSESETPPIYIKEDLDAAENIR---LKYRYLDLRRPDMQKILKIRHKTAKAVR 158

Query: 139 PHLDRDTRPEAILCRIKNWVPPGRTLFIASNERTPGFFSPL 179
             LD++   E     +    P G   ++  +   PG F  L
Sbjct: 159 DFLDKEEFLEVETPMLTKSTPEGARDYLVPSRNYPGMFYAL 199


>sp|Q5F3R2|KDM5B_CHICK Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1
          Length = 1522

 Score = 30.4 bits (67), Expect = 7.6,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 89   SFLPSMAAEKLRDAADKIKALLVDYDSIHVR-RGDRLKTRKDRYGVDRSLFPHLDRDTRP 147
            ++LPS AA  L+DA  K +  L + +++ V  R   L T  +     RS+  HLD   R 
Sbjct: 977  AYLPSGAA--LKDAVQKAQDWLQEVEALQVGGRVPVLDTLVELVTRGRSIPVHLDYLPRL 1034

Query: 148  EAILCRIKNWVPPGRTLFIASN 169
            E+++  ++ W       F+  N
Sbjct: 1035 ESLVAEVQAWKECAANTFLCEN 1056


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.137    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,039,246
Number of Sequences: 539616
Number of extensions: 2561917
Number of successful extensions: 6000
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5996
Number of HSP's gapped (non-prelim): 10
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)