Query 030166
Match_columns 182
No_of_seqs 51 out of 53
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 09:33:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 96.6 0.0021 4.5E-08 54.4 3.8 79 94-180 174-283 (351)
2 PF01531 Glyco_transf_11: Glyc 80.5 3.2 7E-05 35.7 4.8 50 112-171 164-216 (298)
3 PF01320 Colicin_Pyocin: Colic 73.2 2.7 5.9E-05 31.8 2.1 23 136-158 53-75 (85)
4 TIGR02898 spore_YhcN_YlaJ spor 45.3 92 0.002 25.7 6.5 66 97-170 50-123 (158)
5 PF14642 FAM47: FAM47 family 37.0 26 0.00057 31.5 2.3 28 136-164 132-159 (258)
6 PRK15447 putative protease; Pr 36.5 73 0.0016 27.9 4.9 65 87-171 7-71 (301)
7 PF14258 DUF4350: Domain of un 34.9 25 0.00054 23.7 1.4 20 149-168 51-70 (70)
8 PF13872 AAA_34: P-loop contai 32.1 81 0.0017 28.8 4.6 85 80-179 136-233 (303)
9 PF13438 DUF4113: Domain of un 31.4 42 0.0009 22.6 2.1 16 96-111 1-16 (52)
10 cd06592 GH31_glucosidase_KIAA1 31.2 98 0.0021 26.9 4.8 55 95-157 28-82 (303)
11 TIGR01662 HAD-SF-IIIA HAD-supe 31.1 1.5E+02 0.0033 21.5 5.1 53 100-172 60-116 (132)
12 PF08759 DUF1792: Domain of un 30.0 1.3E+02 0.0027 26.6 5.3 78 82-168 87-175 (225)
13 PF09580 Spore_YhcN_YlaJ: Spor 29.6 1.5E+02 0.0032 23.3 5.2 69 96-170 73-142 (177)
14 PF03610 EIIA-man: PTS system 29.2 1.7E+02 0.0037 21.5 5.2 52 96-169 11-65 (116)
15 PRK09912 L-glyceraldehyde 3-ph 28.4 1.7E+02 0.0036 25.7 5.8 56 95-170 112-169 (346)
16 cd03363 TOPRIM_TopoIA_TopoI TO 27.8 1.6E+02 0.0034 22.7 4.9 28 144-171 56-83 (123)
17 PF08339 RTX_C: RTX C-terminal 27.6 50 0.0011 27.4 2.3 28 95-122 95-122 (145)
18 KOG1661 Protein-L-isoaspartate 26.6 52 0.0011 29.5 2.3 11 112-122 162-172 (237)
19 KOG0910 Thioredoxin-like prote 25.8 22 0.00049 29.5 -0.0 21 4-24 52-72 (150)
20 PF10387 DUF2442: Protein of u 25.8 21 0.00046 24.9 -0.2 20 136-155 59-78 (79)
21 TIGR00824 EIIA-man PTS system, 25.8 1.4E+02 0.003 22.6 4.2 52 96-170 13-67 (116)
22 PF02602 HEM4: Uroporphyrinoge 24.1 19 0.00041 28.6 -0.8 59 119-179 78-136 (231)
23 TIGR00334 5S_RNA_mat_M5 ribonu 22.7 82 0.0018 26.7 2.7 37 136-172 49-85 (174)
24 COG0220 Predicted S-adenosylme 22.1 91 0.002 26.8 2.9 28 145-173 142-169 (227)
25 PF12500 TRSP: TRSP domain C t 22.1 37 0.00081 28.0 0.6 41 129-171 28-68 (155)
26 TIGR02495 NrdG2 anaerobic ribo 21.9 3.7E+02 0.008 20.9 6.1 88 60-176 18-105 (191)
27 cd07995 TPK Thiamine pyrophosp 21.9 56 0.0012 26.7 1.6 58 110-171 46-103 (208)
28 COG2092 EFB1 Translation elong 20.5 82 0.0018 24.3 2.1 37 137-175 10-46 (88)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=96.63 E-value=0.0021 Score=54.37 Aligned_cols=79 Identities=23% Similarity=0.282 Sum_probs=40.9
Q ss_pred cchHHHHHHHHHHHHHh----cCCceEEeecC-ccccccccccc----------------------cccccCCCCCCCCC
Q 030166 94 MAAEKLRDAADKIKALL----VDYDSIHVRRG-DRLKTRKDRYG----------------------VDRSLFPHLDRDTR 146 (182)
Q Consensus 94 ~~a~rLm~iv~~I~~~l----~DfDavHVrRG-dk~~~rk~r~g----------------------~~r~l~P~LD~DT~ 146 (182)
..++.++++|+++..++ +.|=|||+|+| |. .+. -.++ ......|.
T Consensus 174 ~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~-~~~-C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------ 245 (351)
T PF10250_consen 174 RFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW-FSA-CEFKGERHLLASPRCWGKKSINPEKKRRNGCCPS------ 245 (351)
T ss_dssp -B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH-HHH-HCT-T----TTTHHHH-GGGTT-----HHHHS--------
T ss_pred ecCHHHHHHHHHHHHHhhcccCceEEEeecccCch-Hhh-cccCCchHHHHHhHhhccccccchhhhhcCCCCC------
Confidence 57889999999998876 39999999999 87 100 0000 00111232
Q ss_pred HHHHHHHhhccc--CCCceEEEecCCCCc--CCCCCCC
Q 030166 147 PEAILCRIKNWV--PPGRTLFIASNERTP--GFFSPLA 180 (182)
Q Consensus 147 pe~il~ri~~~v--~~GR~lYIAtnE~~~--~fFdpLk 180 (182)
.+.+...|++.+ ...++|||||++... ..+++|+
T Consensus 246 ~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~ 283 (351)
T PF10250_consen 246 TPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLK 283 (351)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEEESS-----------H
T ss_pred hHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHH
Confidence 344555555555 345999999999532 3556554
No 2
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=80.47 E-value=3.2 Score=35.75 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=31.1
Q ss_pred CCceEEeecCccccccccccccccccCCCCCCCCCHHHH---HHHhhcccCCCceEEEecCCC
Q 030166 112 DYDSIHVRRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAI---LCRIKNWVPPGRTLFIASNER 171 (182)
Q Consensus 112 DfDavHVrRGdk~~~rk~r~g~~r~l~P~LD~DT~pe~i---l~ri~~~v~~GR~lYIAtnE~ 171 (182)
..=+|||||||....... +..++-.| ++.. ++.+++.+ +.-++||.||+.
T Consensus 164 ~~V~VHIRRGDy~~~~~~-----~~~~~~~~----~~Yy~~Ai~~i~~~~-~~~~f~ifSDD~ 216 (298)
T PF01531_consen 164 NSVCVHIRRGDYVSNGNH-----NWKHGICD----KDYYKKAIEYIREKV-KNPKFFIFSDDI 216 (298)
T ss_pred CeEEEEEEchhccccccc-----cccCCCCC----HHHHHHHHHHHHHhC-CCCEEEEEcCCH
Confidence 556899999998876521 11233333 3444 34455554 356899999975
No 3
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=73.15 E-value=2.7 Score=31.83 Aligned_cols=23 Identities=30% Similarity=0.741 Sum_probs=19.9
Q ss_pred ccCCCCCCCCCHHHHHHHhhccc
Q 030166 136 SLFPHLDRDTRPEAILCRIKNWV 158 (182)
Q Consensus 136 ~l~P~LD~DT~pe~il~ri~~~v 158 (182)
--||.-++|-+||.|+..|++|=
T Consensus 53 IfYP~~~~edsPegIv~~vKeWR 75 (85)
T PF01320_consen 53 IFYPEDGREDSPEGIVKEVKEWR 75 (85)
T ss_dssp HHS-STTSTSSHHHHHHHHHHHH
T ss_pred eeeCCCCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999984
No 4
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=45.27 E-value=92 Score=25.72 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHh---c-CCceEEeecCccccccccccccccccCCCCCCCCCHHHHHHHhh----cccCCCceEEEec
Q 030166 97 EKLRDAADKIKALL---V-DYDSIHVRRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRIK----NWVPPGRTLFIAS 168 (182)
Q Consensus 97 ~rLm~iv~~I~~~l---~-DfDavHVrRGdk~~~rk~r~g~~r~l~P~LD~DT~pe~il~ri~----~~v~~GR~lYIAt 168 (182)
..+.++|+.|.++. . ==||-=|.-|+.+... + .+=.+ +.+...+.|..+++ +-.|.++++||.+
T Consensus 50 ~~~~~~A~~Ia~~v~~v~~V~dA~vvVtg~~A~Vg-----v--~~~~~-~~~~~~~~iK~~Va~~Vk~~dp~~~~VyVsa 121 (158)
T TIGR02898 50 GDLYDVADEIASEAAKVKGVKDATVVITGNYAYVG-----V--DLTNG-LEGSVTDELKEKVAETVKSTDNRIANVYVSA 121 (158)
T ss_pred hhHHHHHHHHHHHHhcCCCCceEEEEEECCEEEEE-----E--EcCCC-cchhhHHHHHHHHHHHHHhhCCCcceEEEEc
Confidence 34567777777655 3 3467777888877654 1 11122 22445666766666 6678899999999
Q ss_pred CC
Q 030166 169 NE 170 (182)
Q Consensus 169 nE 170 (182)
|.
T Consensus 122 Dp 123 (158)
T TIGR02898 122 DP 123 (158)
T ss_pred CH
Confidence 74
No 5
>PF14642 FAM47: FAM47 family
Probab=37.00 E-value=26 Score=31.50 Aligned_cols=28 Identities=36% Similarity=0.814 Sum_probs=21.5
Q ss_pred ccCCCCCCCCCHHHHHHHhhcccCCCceE
Q 030166 136 SLFPHLDRDTRPEAILCRIKNWVPPGRTL 164 (182)
Q Consensus 136 ~l~P~LD~DT~pe~il~ri~~~v~~GR~l 164 (182)
.+||||..|..|| |+.++-+.+++.|.|
T Consensus 132 AlyP~LeE~mPpd-Lll~VLevLDPerkL 159 (258)
T PF14642_consen 132 ALYPHLEEDMPPD-LLLKVLEVLDPERKL 159 (258)
T ss_pred ccCCCccccCCHH-HHHHHHhccCcccch
Confidence 6899999999997 555555666777766
No 6
>PRK15447 putative protease; Provisional
Probab=36.46 E-value=73 Score=27.89 Aligned_cols=65 Identities=12% Similarity=0.172 Sum_probs=45.5
Q ss_pred cCCcccccchHHHHHHHHHHHHHhcCCceEEeecCccccccccccccccccCCCCCCCCCHHHHHHHhhcccCCCceEEE
Q 030166 87 PHSFLPSMAAEKLRDAADKIKALLVDYDSIHVRRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRIKNWVPPGRTLFI 166 (182)
Q Consensus 87 P~~~l~~~~a~rLm~iv~~I~~~l~DfDavHVrRGdk~~~rk~r~g~~r~l~P~LD~DT~pe~il~ri~~~v~~GR~lYI 166 (182)
|-.|- |++.++.+...+|+.. -.|+|.+.-.. .+. | . .-+.++|.+-++..=..|..+|+
T Consensus 7 ~~~~~--~p~~~~~~~~~~~~~~--gaDaVY~g~~~--~~~--R-----~-------~f~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 7 PVLYY--WPKETVRDFYQRAADS--PVDIVYLGETV--CSK--R-----R-------ELKVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred ccccC--CCCCCHHHHHHHHHcC--CCCEEEECCcc--CCC--c-----c-------CCCHHHHHHHHHHHHHcCCEEEE
Confidence 44444 8999988887766542 39999998322 222 1 1 13678888888877789999999
Q ss_pred ecCCC
Q 030166 167 ASNER 171 (182)
Q Consensus 167 AtnE~ 171 (182)
|+|-.
T Consensus 67 a~p~i 71 (301)
T PRK15447 67 STLAL 71 (301)
T ss_pred Eeccc
Confidence 99875
No 7
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=34.88 E-value=25 Score=23.75 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=16.2
Q ss_pred HHHHHhhcccCCCceEEEec
Q 030166 149 AILCRIKNWVPPGRTLFIAS 168 (182)
Q Consensus 149 ~il~ri~~~v~~GR~lYIAt 168 (182)
+=.+.|.+|+..|.+|+||.
T Consensus 51 ~~~~~l~~~v~~G~~lvl~a 70 (70)
T PF14258_consen 51 EEAEALLEWVEAGNTLVLAA 70 (70)
T ss_pred HHHHHHHHHHHcCCEEEEeC
Confidence 33458899999999999973
No 8
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=32.10 E-value=81 Score=28.84 Aligned_cols=85 Identities=21% Similarity=0.302 Sum_probs=52.5
Q ss_pred ccccccccCCccccc------chHHHHHHHHHHHHHhc-CCceEEeecCc--cccccccccccccccCCCCCCCCCHHHH
Q 030166 80 NHSALMLPHSFLPSM------AAEKLRDAADKIKALLV-DYDSIHVRRGD--RLKTRKDRYGVDRSLFPHLDRDTRPEAI 150 (182)
Q Consensus 80 ~~~~v~~P~~~l~~~------~a~rLm~iv~~I~~~l~-DfDavHVrRGd--k~~~rk~r~g~~r~l~P~LD~DT~pe~i 150 (182)
.+.+|+.-|+.|.+- +..||..+++ -+| |||.+=|= .+ +++|= .+-. -.=|.-...
T Consensus 136 ~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~----W~g~dfdgvivf-DEcH~akn~---~~~~-------~~~sk~g~a 200 (303)
T PF13872_consen 136 KEGVLFSTYSTLISESQSGGKYRSRLDQLVD----WCGEDFDGVIVF-DECHKAKNL---SSGS-------KKPSKTGIA 200 (303)
T ss_pred CCCccchhHHHHHhHHhccCCccchHHHHHH----HHhcCCCceEEe-ccchhcCCC---CccC-------ccccHHHHH
Confidence 345788888887643 2356766665 554 88885332 22 12111 0000 112344567
Q ss_pred HHHhhcccCCCceEEE----ecCCCCcCCCCCC
Q 030166 151 LCRIKNWVPPGRTLFI----ASNERTPGFFSPL 179 (182)
Q Consensus 151 l~ri~~~v~~GR~lYI----AtnE~~~~fFdpL 179 (182)
+..|++.+|..|.||. ||+.+|-+|...|
T Consensus 201 vl~LQ~~LP~ARvvY~SATgasep~NmaYm~RL 233 (303)
T PF13872_consen 201 VLELQNRLPNARVVYASATGASEPRNMAYMSRL 233 (303)
T ss_pred HHHHHHhCCCCcEEEecccccCCCceeeeeeec
Confidence 8889999999999998 5777787777665
No 9
>PF13438 DUF4113: Domain of unknown function (DUF4113)
Probab=31.38 E-value=42 Score=22.64 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHhc
Q 030166 96 AEKLRDAADKIKALLV 111 (182)
Q Consensus 96 a~rLm~iv~~I~~~l~ 111 (182)
+.+||.++++|-.++|
T Consensus 1 ~~~LM~~iD~iN~r~G 16 (52)
T PF13438_consen 1 RQRLMQAIDAINRRFG 16 (52)
T ss_pred ChHHHHHHHHHHHhcC
Confidence 3689999999999998
No 10
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=31.16 E-value=98 Score=26.86 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHHHHhcCCceEEeecCccccccccccccccccCCCCCCCCCHHHHHHHhhcc
Q 030166 95 AAEKLRDAADKIKALLVDYDSIHVRRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRIKNW 157 (182)
Q Consensus 95 ~a~rLm~iv~~I~~~l~DfDavHVrRGdk~~~rk~r~g~~r~l~P~LD~DT~pe~il~ri~~~ 157 (182)
....|+++|+++++.==-+|+||+.=|.... ..-|-..++.||+ |.+++++|.+.
T Consensus 28 s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~--~g~f~~d~~~FPd------p~~mi~~l~~~ 82 (303)
T cd06592 28 NQETVLNYAQEIIDNGFPNGQIEIDDNWETC--YGDFDFDPTKFPD------PKGMIDQLHDL 82 (303)
T ss_pred CHHHHHHHHHHHHHcCCCCCeEEeCCCcccc--CCccccChhhCCC------HHHHHHHHHHC
Confidence 3567888999888753378999997554221 1123344477885 78999988873
No 11
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=31.11 E-value=1.5e+02 Score=21.50 Aligned_cols=53 Identities=13% Similarity=0.288 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhc-CCceEEeecCccccccccccccccccCCCCCCCCCHHHHHHHhhcc--cCCCceEEEec-CCCC
Q 030166 100 RDAADKIKALLV-DYDSIHVRRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRIKNW--VPPGRTLFIAS-NERT 172 (182)
Q Consensus 100 m~iv~~I~~~l~-DfDavHVrRGdk~~~rk~r~g~~r~l~P~LD~DT~pe~il~ri~~~--v~~GR~lYIAt-nE~~ 172 (182)
.+.+.++.++++ .|+.+.+.. . . .| | +|+.+..-+++. +++.+.+||.= .+.+
T Consensus 60 ~~~~~~~l~~~~l~~~~~~~~~-~-~-~K-----------P------~~~~~~~~~~~~~~~~~~~~v~IGD~~~~D 116 (132)
T TIGR01662 60 SGRVARRLEELGVPIDVLYACP-H-C-RK-----------P------KPGMFLEALKRFNEIDPEESVYVGDQDLTD 116 (132)
T ss_pred HHHHHHHHHHCCCCEEEEEECC-C-C-CC-----------C------ChHHHHHHHHHcCCCChhheEEEcCCCccc
Confidence 455667777887 666655433 1 1 11 2 566666666664 78999999987 3443
No 12
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=29.97 E-value=1.3e+02 Score=26.63 Aligned_cols=78 Identities=24% Similarity=0.307 Sum_probs=57.5
Q ss_pred ccccccCCcccccchHHHHHHHHHHHHHhcCCceEEeecCccccccccccccccccCCCC-----------CCCCCHHHH
Q 030166 82 SALMLPHSFLPSMAAEKLRDAADKIKALLVDYDSIHVRRGDRLKTRKDRYGVDRSLFPHL-----------DRDTRPEAI 150 (182)
Q Consensus 82 ~~v~~P~~~l~~~~a~rLm~iv~~I~~~l~DfDavHVrRGdk~~~rk~r~g~~r~l~P~L-----------D~DT~pe~i 150 (182)
+.|-|||..+- --..--...+++++.-.+=|.+=|.. + ++|+||.-.||-|. |+=..-++|
T Consensus 87 tfisRpY~d~~--dK~~~~~~f~klK~iW~~rdilIVEG-~-----~sR~GvgnDLFdnaksI~rIicPsknAf~~~d~I 158 (225)
T PF08759_consen 87 TFISRPYIDYK--DKSKSARYFEKLKQIWKDRDILIVEG-E-----KSRSGVGNDLFDNAKSIKRIICPSKNAFSKYDEI 158 (225)
T ss_pred eeeeeeeeecc--cchHHHHHHHHHHHHhCCCcEEEEec-C-----CeecCCCchhhhCccceEEEECCchhhHHHHHHH
Confidence 57899999883 33446778889998877999887765 3 58999988877664 434455788
Q ss_pred HHHhhcccCCCceEEEec
Q 030166 151 LCRIKNWVPPGRTLFIAS 168 (182)
Q Consensus 151 l~ri~~~v~~GR~lYIAt 168 (182)
++.+.+. .+++.+.||=
T Consensus 159 ~~~i~~~-~~~~LiLiaL 175 (225)
T PF08759_consen 159 LEAIKKY-AKDKLILIAL 175 (225)
T ss_pred HHHHHHh-CCCcEEEEec
Confidence 8888865 7778877763
No 13
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=29.59 E-value=1.5e+02 Score=23.32 Aligned_cols=69 Identities=13% Similarity=0.176 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHhcCCceEEe-ecCccccccccccccccccCCCCCCCCCHHHHHHHhhcccCCCceEEEecCC
Q 030166 96 AEKLRDAADKIKALLVDYDSIHV-RRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRIKNWVPPGRTLFIASNE 170 (182)
Q Consensus 96 a~rLm~iv~~I~~~l~DfDavHV-rRGdk~~~rk~r~g~~r~l~P~LD~DT~pe~il~ri~~~v~~GR~lYIAtnE 170 (182)
...+.+-+..+...|...+-.+| .-|+.+.. ||.-. +...+.+.-...|.+++++..|..++|||.||.
T Consensus 73 ~~~~a~~i~~~v~~~~~V~~A~vvv~~~~a~V-----av~~~-~~~~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D~ 142 (177)
T PF09580_consen 73 RQQLADRIANRVKKVPGVEDATVVVTDDNAYV-----AVDLD-FNRFNTKKIKKKVEKAVKSADPRIYNVYVSTDP 142 (177)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEECCEEEE-----EEEec-ccccchhHHHHHHHHHHHHhCCCccEEEEEcCH
Confidence 34455555555556655555554 45554443 34333 223333334455666666666777999999974
No 14
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=29.23 E-value=1.7e+02 Score=21.51 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHhcCCceEEeecCccccccccccccccccCCCCCCCCCHHHHHHHhhccc---CCCceEEEecC
Q 030166 96 AEKLRDAADKIKALLVDYDSIHVRRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRIKNWV---PPGRTLFIASN 169 (182)
Q Consensus 96 a~rLm~iv~~I~~~l~DfDavHVrRGdk~~~rk~r~g~~r~l~P~LD~DT~pe~il~ri~~~v---~~GR~lYIAtn 169 (182)
|+-+.+.++.|.+. +.+.+|..-.. .|.+++.+.+++++.+ +.+..+.|-||
T Consensus 11 A~g~~~~~~~i~G~--~~~~i~~~~~~--------------------~~~~~~~~~~~l~~~i~~~~~~~~vlil~D 65 (116)
T PF03610_consen 11 AEGLLESAEMILGE--DQDNIEAVDLY--------------------PDESIEDFEEKLEEAIEELDEGDGVLILTD 65 (116)
T ss_dssp HHHHHHHHHHHHTS--TCSSEEEEEET--------------------TTSCHHHHHHHHHHHHHHCCTTSEEEEEES
T ss_pred HHHHHHHHHHHcCC--CcccEEEEECc--------------------CCCCHHHHHHHHHHHHHhccCCCcEEEEee
Confidence 55666666655544 14455554322 4568888888888877 77888888776
No 15
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=28.38 E-value=1.7e+02 Score=25.68 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHHHHhc-CC-ceEEeecCccccccccccccccccCCCCCCCCCHHHHHHHhhcccCCCceEEEecCC
Q 030166 95 AAEKLRDAADKIKALLV-DY-DSIHVRRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRIKNWVPPGRTLFIASNE 170 (182)
Q Consensus 95 ~a~rLm~iv~~I~~~l~-Df-DavHVrRGdk~~~rk~r~g~~r~l~P~LD~DT~pe~il~ri~~~v~~GR~lYIAtnE 170 (182)
....++..++.-..+|| || |.+.+-+-+ .++..++.++-+++.+..|..-||+...
T Consensus 112 s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~--------------------~~~~~~e~~~al~~l~~~GkIr~iGvSn 169 (346)
T PRK09912 112 SRKYLLASLDQSLKRMGLEYVDIFYSHRVD--------------------ENTPMEETASALAHAVQSGKALYVGISS 169 (346)
T ss_pred CHHHHHHHHHHHHHHHCCCcEEEEEeCCCC--------------------CCCCHHHHHHHHHHHHHcCCeeEEEecC
Confidence 45679999999999998 76 999887744 2345678889999999999999986544
No 16
>cd03363 TOPRIM_TopoIA_TopoI TOPRIM_TopoIA_TopoI: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to Escherichia coli DNA topoisomerase I. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=27.76 E-value=1.6e+02 Score=22.67 Aligned_cols=28 Identities=7% Similarity=0.229 Sum_probs=21.9
Q ss_pred CCCHHHHHHHhhcccCCCceEEEecCCC
Q 030166 144 DTRPEAILCRIKNWVPPGRTLFIASNER 171 (182)
Q Consensus 144 DT~pe~il~ri~~~v~~GR~lYIAtnE~ 171 (182)
......+++.|++.+..=..++||||--
T Consensus 56 ~~~~~~~~~~ik~l~~~~~eiiiAtD~d 83 (123)
T cd03363 56 IPGKKKVVKELKKLAKKADEIYLATDPD 83 (123)
T ss_pred CccHHHHHHHHHHHHhcCCEEEEcCCCC
Confidence 3445678889999887778899999853
No 17
>PF08339 RTX_C: RTX C-terminal domain; InterPro: IPR013550 This domain describes the C-terminal region of various bacterial haemolysins and leukotoxins, which belong to the RTX family of toxins. These are produced by various Gram negative bacteria, such as Escherichia coli (P09983 from SWISSPROT) and Actinobacillus pleuropneumoniae (P15377 from SWISSPROT). RTX toxins may interact with lipopolysaccharide (LPS) to functionally impair and eventually kill leukocytes []. This region is found in association with the RTX N-terminal domain (IPR003995 from INTERPRO) and multiple hemolysin-type calcium-binding repeats (IPR001343 from INTERPRO).
Probab=27.58 E-value=50 Score=27.37 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHhcCCceEEeecCc
Q 030166 95 AAEKLRDAADKIKALLVDYDSIHVRRGD 122 (182)
Q Consensus 95 ~a~rLm~iv~~I~~~l~DfDavHVrRGd 122 (182)
....|.+-.++|++.+|-|++-|+.||-
T Consensus 95 ~~~~l~n~i~KIISS~~~F~s~~~~~~s 122 (145)
T PF08339_consen 95 NLSNLANEINKIISSAGSFTSSNDSRNS 122 (145)
T ss_pred hhHHHHHHHHHHHHHhhccccccccccc
Confidence 5678999999999999999999987765
No 18
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.57 E-value=52 Score=29.47 Aligned_cols=11 Identities=45% Similarity=0.755 Sum_probs=9.7
Q ss_pred CCceEEeecCc
Q 030166 112 DYDSIHVRRGD 122 (182)
Q Consensus 112 DfDavHVrRGd 122 (182)
-||+|||..+.
T Consensus 162 ~YDaIhvGAaa 172 (237)
T KOG1661|consen 162 PYDAIHVGAAA 172 (237)
T ss_pred CcceEEEccCc
Confidence 69999999877
No 19
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.84 E-value=22 Score=29.47 Aligned_cols=21 Identities=33% Similarity=0.676 Sum_probs=17.5
Q ss_pred cchhhhhccccceeecCchhH
Q 030166 4 LYDLELISETVPVILDNSKIW 24 (182)
Q Consensus 4 lyDidlis~tVpvI~d~sk~W 24 (182)
.+|-..+++++|||+|+.-.|
T Consensus 52 ~~~~~Vi~S~~PVlVdF~A~W 72 (150)
T KOG0910|consen 52 EFDDKVINSDVPVLVDFHAEW 72 (150)
T ss_pred HHHHHHHccCCCEEEEEecCc
Confidence 455567899999999998888
No 20
>PF10387 DUF2442: Protein of unknown function (DUF2442); InterPro: IPR018841 Several proteins in this entry are annotated as being putative molybdopterin-guanine dinucleotide biosynthesis proteins, but this has not been confirmed. The function of these proteins is therefore not known. ; PDB: 2AUW_B 2X8N_A 3K8R_B.
Probab=25.80 E-value=21 Score=24.88 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=17.8
Q ss_pred ccCCCCCCCCCHHHHHHHhh
Q 030166 136 SLFPHLDRDTRPEAILCRIK 155 (182)
Q Consensus 136 ~l~P~LD~DT~pe~il~ri~ 155 (182)
--||++|-|-+|+.|+...+
T Consensus 59 i~W~~~d~dl~~~~L~~~~~ 78 (79)
T PF10387_consen 59 IEWPDLDLDLSPDGLYEGAK 78 (79)
T ss_dssp EEETTTTEEEEHHHHHHTHH
T ss_pred EEeCCCCcEeCHHHHhccCC
Confidence 67999999999999998765
No 21
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=25.80 E-value=1.4e+02 Score=22.60 Aligned_cols=52 Identities=10% Similarity=0.049 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHhcCCceEEeecCccccccccccccccccCCCCCCCCCHHHHHHHhhccc---CCCceEEEecCC
Q 030166 96 AEKLRDAADKIKALLVDYDSIHVRRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRIKNWV---PPGRTLFIASNE 170 (182)
Q Consensus 96 a~rLm~iv~~I~~~l~DfDavHVrRGdk~~~rk~r~g~~r~l~P~LD~DT~pe~il~ri~~~v---~~GR~lYIAtnE 170 (182)
|+-|.+.++-|.+...+.-++-... +.+|+++.+++++.+ +.+..+.|-||=
T Consensus 13 A~gl~~s~~~i~G~~~~i~~i~~~~-----------------------~~~~~~~~~~l~~~i~~~~~~~~vivltDl 67 (116)
T TIGR00824 13 AIALLKSAEMIFGEQNNVGAVPFVP-----------------------GENAETLQEKYNAALADLDTEEEVLFLVDI 67 (116)
T ss_pred HHHHHHHHHHHcCCcCCeEEEEcCC-----------------------CcCHHHHHHHHHHHHHhcCCCCCEEEEEeC
Confidence 5667777776665544444444333 347888888877666 466778887774
No 22
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=24.07 E-value=19 Score=28.57 Aligned_cols=59 Identities=17% Similarity=0.291 Sum_probs=37.0
Q ss_pred ecCccccccccccccccccCCCCCCCCCHHHHHHHhhcccCCCceEEEecCCCCcCCCCCC
Q 030166 119 RRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRIKNWVPPGRTLFIASNERTPGFFSPL 179 (182)
Q Consensus 119 rRGdk~~~rk~r~g~~r~l~P~LD~DT~pe~il~ri~~~v~~GR~lYIAtnE~~~~fFdpL 179 (182)
..|++-.+.=...|..-...|. ..-+.+.|++.+...+.++|.||+.++.....+-+.|
T Consensus 78 avG~~Ta~~l~~~G~~~~~~~~--~~~~s~~L~~~l~~~~~~~~vl~~~g~~~~~~l~~~L 136 (231)
T PF02602_consen 78 AVGPKTAEALREYGFQPDFVPS--SEGSSEGLAELLKEQLRGKRVLILRGEGGRPDLPEKL 136 (231)
T ss_dssp ESSHHHHHHHHHTT-EECEE-T--TSSSHHHHHGGHHHCCTTEEEEEEESSSSCHHHHHHH
T ss_pred EEcHHHHHHHHHcCCCccccCC--CCCCHHHHHHHHHhhCCCCeEEEEcCCCccHHHHHHH
Confidence 3344443333333444444443 1236799999999999889999999998876554444
No 23
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=22.73 E-value=82 Score=26.72 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=30.9
Q ss_pred ccCCCCCCCCCHHHHHHHhhcccCCCceEEEecCCCC
Q 030166 136 SLFPHLDRDTRPEAILCRIKNWVPPGRTLFIASNERT 172 (182)
Q Consensus 136 ~l~P~LD~DT~pe~il~ri~~~v~~GR~lYIAtnE~~ 172 (182)
-..=-.|.|...|-|.+.|.+.+|.-.+.||.-.+..
T Consensus 49 gVIIfTDpD~~GekIRk~i~~~vp~~khafi~~~~a~ 85 (174)
T TIGR00334 49 GVIILTDPDFPGEKIRKKIEQHLPGYENCFIPKHLAK 85 (174)
T ss_pred CEEEEeCCCCchHHHHHHHHHHCCCCeEEeeeHHhcC
Confidence 3344568999999999999999999999999866654
No 24
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=22.13 E-value=91 Score=26.77 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=22.7
Q ss_pred CCHHHHHHHhhcccCCCceEEEecCCCCc
Q 030166 145 TRPEAILCRIKNWVPPGRTLFIASNERTP 173 (182)
Q Consensus 145 T~pe~il~ri~~~v~~GR~lYIAtnE~~~ 173 (182)
|+| ..++.++..+.+|-.|+.|||-.++
T Consensus 142 ~~~-~fl~~~a~~Lk~gG~l~~aTD~~~y 169 (227)
T COG0220 142 TQP-EFLKLYARKLKPGGVLHFATDNEEY 169 (227)
T ss_pred CCH-HHHHHHHHHccCCCEEEEEecCHHH
Confidence 444 4678899999999999999997554
No 25
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=22.09 E-value=37 Score=28.00 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=28.2
Q ss_pred cccccccccCCCCCCCCCHHHHHHHhhcccCCCceEEEecCCC
Q 030166 129 DRYGVDRSLFPHLDRDTRPEAILCRIKNWVPPGRTLFIASNER 171 (182)
Q Consensus 129 ~r~g~~r~l~P~LD~DT~pe~il~ri~~~v~~GR~lYIAtnE~ 171 (182)
.|||+.+..-..++ -..+.+-..|+...+.+++|.+.|+|-
T Consensus 28 GR~G~~~~~~~~~~--~~~~~~~~~l~~~~~~~~vLVLGTgEf 68 (155)
T PF12500_consen 28 GRFGISRADRAALD--AALQALAARLAAKRPGERVLVLGTGEF 68 (155)
T ss_pred CCCCCCHHHHHHHH--HHHHHHHHHHHhhcCCCcEEEEccchH
Confidence 48888776644443 234555666666668899999999983
No 26
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=21.94 E-value=3.7e+02 Score=20.89 Aligned_cols=88 Identities=9% Similarity=0.036 Sum_probs=50.7
Q ss_pred eEEEecCCCceeeeeecCccccccccccCCcccccchHHHHHHHHHHHHHhcCCceEEeecCccccccccccccccccCC
Q 030166 60 LLINRTASPLSWFMECKDRKNHSALMLPHSFLPSMAAEKLRDAADKIKALLVDYDSIHVRRGDRLKTRKDRYGVDRSLFP 139 (182)
Q Consensus 60 ~lI~R~fspnyWy~vCeg~~~~~~v~~P~~~l~~~~a~rLm~iv~~I~~~l~DfDavHVrRGdk~~~rk~r~g~~r~l~P 139 (182)
+++..|-..|+.-.-|-... .....+...+ . +-++++.|....+....|++-.||-.
T Consensus 18 ~~~~~t~~Cnl~C~~C~~~~--~~~~~~~~~~---~---~~~i~~~i~~~~~~~~~i~~sGGEPl--------------- 74 (191)
T TIGR02495 18 AFTIFFQGCNLKCPYCHNPE--LIDREGSGEI---E---VEFLLEFLRSRQGLIDGVVITGGEPT--------------- 74 (191)
T ss_pred EEEEEcCCCCCCCCCCCCcc--ccCCCCCCcC---C---HHHHHHHHHHhcCCCCeEEEECCccc---------------
Confidence 44556777888888886543 1111222222 2 33444445444344678888888833
Q ss_pred CCCCCCCHHHHHHHhhcccCCCceEEEecCCCCcCCC
Q 030166 140 HLDRDTRPEAILCRIKNWVPPGRTLFIASNERTPGFF 176 (182)
Q Consensus 140 ~LD~DT~pe~il~ri~~~v~~GR~lYIAtnE~~~~fF 176 (182)
|..| -..+++.+++ .|-.+.|.||+......
T Consensus 75 -l~~~--l~~li~~~~~---~g~~v~i~TNg~~~~~l 105 (191)
T TIGR02495 75 -LQAG--LPDFLRKVRE---LGFEVKLDTNGSNPRVL 105 (191)
T ss_pred -CcHh--HHHHHHHHHH---CCCeEEEEeCCCCHHHH
Confidence 3322 3466666666 46678999998765433
No 27
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=21.89 E-value=56 Score=26.74 Aligned_cols=58 Identities=22% Similarity=0.138 Sum_probs=34.4
Q ss_pred hcCCceEEeecCccccccccccccccccCCCCCCCCCHHHHHHHhhcccCCCceEEEecCCC
Q 030166 110 LVDYDSIHVRRGDRLKTRKDRYGVDRSLFPHLDRDTRPEAILCRIKNWVPPGRTLFIASNER 171 (182)
Q Consensus 110 l~DfDavHVrRGdk~~~rk~r~g~~r~l~P~LD~DT~pe~il~ri~~~v~~GR~lYIAtnE~ 171 (182)
.|||||+.-.--++. ...|+....+|.--.+|.-|.-++.+.+.-..-=.++=||-+|
T Consensus 46 iGDfDSi~~~~~~~~----~~~~~~~~~~p~~KD~TD~e~Al~~~~~~~~~~i~i~Ga~GgR 103 (208)
T cd07995 46 IGDFDSISPEVLEYY----KSKGVEIIHFPDEKDFTDFEKALKLALERGADEIVILGATGGR 103 (208)
T ss_pred EecCcCCCHHHHHHH----HhcCCeEEECCCCCCCCHHHHHHHHHHHcCCCEEEEEccCCCc
Confidence 499999963222222 2337788899985557777777777766533222333344444
No 28
>COG2092 EFB1 Translation elongation factor EF-1beta [Translation, ribosomal structure and biogenesis]
Probab=20.53 E-value=82 Score=24.30 Aligned_cols=37 Identities=27% Similarity=0.447 Sum_probs=28.7
Q ss_pred cCCCCCCCCCHHHHHHHhhcccCCCceEEEecCCCCcCC
Q 030166 137 LFPHLDRDTRPEAILCRIKNWVPPGRTLFIASNERTPGF 175 (182)
Q Consensus 137 l~P~LD~DT~pe~il~ri~~~v~~GR~lYIAtnE~~~~f 175 (182)
..|. |.|+..+.|..+|++.+++|=.+- +..+-..+|
T Consensus 10 V~P~-d~evdl~~L~~~ik~~l~~g~~~~-~~~~epIaF 46 (88)
T COG2092 10 VMPD-DPEVDLEELEEKIKEKLPEGYELI-KIEEEPIAF 46 (88)
T ss_pred ecCC-CCCCCHHHHHHHHHHhccccceec-cceeEeeee
Confidence 4555 789999999999999998886654 766666555
Done!