BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030167
MKMALNCSSSTCITFSYNKIRNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKARFVAR
RKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRSSMINRISCDSNSSNSEV
QQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSRSICYSFIE
VN

High Scoring Gene Products

Symbol, full name Information P value
AT5G04440 protein from Arabidopsis thaliana 6.8e-24

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030167
        (182 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2184377 - symbol:AT5G04440 "AT5G04440" species...   274  6.8e-24   1


>TAIR|locus:2184377 [details] [associations]
            symbol:AT5G04440 "AT5G04440" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009507 "chloroplast" evidence=IDA] EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0009507 InterPro:IPR018971
            Pfam:PF09366 EMBL:BT022095 EMBL:BT024482 IPI:IPI00525146
            RefSeq:NP_196064.2 UniGene:At.33125 ProteinModelPortal:Q500X2
            STRING:Q500X2 PaxDb:Q500X2 PRIDE:Q500X2 EnsemblPlants:AT5G04440.1
            GeneID:830323 KEGG:ath:AT5G04440 TAIR:At5g04440 eggNOG:NOG284302
            InParanoid:Q500X2 OMA:VYRFRFF PhylomeDB:Q500X2
            ProtClustDB:CLSN2690780 Genevestigator:Q500X2 Uniprot:Q500X2
        Length = 255

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 53/85 (62%), Positives = 67/85 (78%)

Query:    88 LDAERIERVDDNTFRSSMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAI 147
             L+   +    ++ F +SM+NR+SCDS    S  QQ+TSDA IEV+IE+PFAFR FPV AI
Sbjct:   151 LEGSPVVVAQNDKFDASMVNRVSCDSTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAI 210

Query:   148 ESTGTQVLDQILKLMLPRFMSQVSR 172
             E+TGTQVLDQILKLMLPRF+SQ+S+
Sbjct:   211 EATGTQVLDQILKLMLPRFLSQLSK 235

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 51/61 (83%), Positives = 58/61 (95%)

Query:    42 SPFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTF 101
             SP RVS++++P KARF+AR+K+SV VRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTF
Sbjct:    55 SPIRVSSSSTP-KARFIARQKQSVSVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTF 113

Query:   102 R 102
             R
Sbjct:   114 R 114


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.130   0.362    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      182       172   0.00093  108 3  10 22  0.48    31
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  175 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.21u 0.18s 24.39t   Elapsed:  00:00:01
  Total cpu time:  24.21u 0.18s 24.39t   Elapsed:  00:00:01
  Start:  Fri May 10 11:29:02 2013   End:  Fri May 10 11:29:03 2013

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