BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030167
         (182 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZOF|A Chain A, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
           Mn Bestatin
 pdb|2ZOF|B Chain B, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
           Mn Bestatin
 pdb|2ZOG|A Chain A, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
           Zn Bestatin
 pdb|2ZOG|B Chain B, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
           Zn Bestatin
          Length = 479

 Score = 31.2 bits (69), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 22/77 (28%)

Query: 126 DAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVS-------------- 171
           +A+ +   E+P   R F +E +E +G++ LD+++     +F   V               
Sbjct: 149 EAYQKTGQEIPVNLR-FCLEGMEESGSEGLDELIFAQKDKFFKDVDYVCISDNYWLGKNK 207

Query: 172 -------RSICYSFIEV 181
                  R ICY FIEV
Sbjct: 208 PCITYGLRGICYFFIEV 224


>pdb|2X0B|B Chain B, Crystal Structure Of Human Angiotensinogen Complexed With
           Renin
 pdb|2X0B|D Chain D, Crystal Structure Of Human Angiotensinogen Complexed With
           Renin
 pdb|2X0B|F Chain F, Crystal Structure Of Human Angiotensinogen Complexed With
           Renin
 pdb|2X0B|H Chain H, Crystal Structure Of Human Angiotensinogen Complexed With
           Renin
          Length = 452

 Score = 27.3 bits (59), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 74  LIEYMSLPASQYSVLDAERI--ERVDDNTFRSSMINRISCDSNSSNSEVQQLTSDAFIEV 131
           L+    LPA  ++ L+ +++  +R+      +S+   +  D        QQL     +EV
Sbjct: 362 LLAQAELPAILHTELNLQKLSNDRIRVGEVLNSIFFELEADEREPTESTQQLNKPEVLEV 421

Query: 132 SIEVPFAFRAF 142
           ++  PF F  +
Sbjct: 422 TLNRPFLFAVY 432


>pdb|2WXW|A Chain A, Crystal Structure Of Human Angiotensinogen
          Length = 453

 Score = 27.3 bits (59), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 74  LIEYMSLPASQYSVLDAERI--ERVDDNTFRSSMINRISCDSNSSNSEVQQLTSDAFIEV 131
           L+    LPA  ++ L+ +++  +R+      +S+   +  D        QQL     +EV
Sbjct: 363 LLAQAELPAILHTELNLQKLSNDRIRVGEVLNSIFFELEADEREPTESTQQLNKPEVLEV 422

Query: 132 SIEVPFAFRAF 142
           ++  PF F  +
Sbjct: 423 TLNRPFLFAVY 433


>pdb|4H0N|A Chain A, Crystal Structure Of Spodoptera Frugiperda Dnmt2
           E260a/e261a/k263a Mutant
 pdb|4H0N|B Chain B, Crystal Structure Of Spodoptera Frugiperda Dnmt2
           E260a/e261a/k263a Mutant
 pdb|4H0N|C Chain C, Crystal Structure Of Spodoptera Frugiperda Dnmt2
           E260a/e261a/k263a Mutant
 pdb|4H0N|D Chain D, Crystal Structure Of Spodoptera Frugiperda Dnmt2
           E260a/e261a/k263a Mutant
          Length = 333

 Score = 26.9 bits (58), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 82  ASQYSVLDAERIERVDDNTFRSSMINRISCDSNSSNSEVQQLT 124
           A + S LD E +  VD NT  +S+      ++N  N  +QQLT
Sbjct: 19  AWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLT 61


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.130    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,831,902
Number of Sequences: 62578
Number of extensions: 115282
Number of successful extensions: 272
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 10
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)