BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030167
         (182 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A7ICB3|RLMN_XANP2 Dual-specificity RNA methyltransferase RlmN OS=Xanthobacter
           autotrophicus (strain ATCC BAA-1158 / Py2) GN=rlmN PE=3
           SV=1
          Length = 414

 Score = 32.3 bits (72), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 51  SPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRSS 104
           SPA AR + +  E V  +     LI +   P +QY   D E IER  D  FR+ 
Sbjct: 321 SPADARALVKLLEGVPAKI---NLIPFNPWPGTQYECSDWETIERFSDIVFRAG 371


>sp|P0CO18|SWR1_CRYNJ Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
           (strain JEC21 / ATCC MYA-565) GN=SWR1 PE=3 SV=1
          Length = 1246

 Score = 32.0 bits (71), Expect = 2.5,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 21/143 (14%)

Query: 18  NKIRNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKARFVARRKESV----RVRQLQRP 73
           N++  P N  S T N G F L + S   VS A+ PA    + R+        R R+++  
Sbjct: 66  NRLEEPHNPVSSTANIGNFALLESSSAEVSDASCPATMPILVRQSPKTCSQPRTRKVKLS 125

Query: 74  LIEYMSLPASQYSVLDAERIERVDDNT------------FRSSMINRISCDSNSSNSEVQ 121
            +   S P    +  D E   R++D+               +    R S + N  +SE +
Sbjct: 126 TLSLSSDPDPDIN--DPEFKARLEDSNQDDQDEELDLEMEEADSAGRESGEGN-RDSEDE 182

Query: 122 QLTSDAFIEVSIEVPFAFRAFPV 144
            L +DA  ++ IEV      +PV
Sbjct: 183 GLLADA--DLPIEVLLRRYGYPV 203


>sp|P0CO19|SWR1_CRYNB Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
           (strain B-3501A) GN=SWR1 PE=3 SV=1
          Length = 1246

 Score = 32.0 bits (71), Expect = 2.5,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 21/143 (14%)

Query: 18  NKIRNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKARFVARRKESV----RVRQLQRP 73
           N++  P N  S T N G F L + S   VS A+ PA    + R+        R R+++  
Sbjct: 66  NRLEEPHNPVSSTANIGNFALLESSSAEVSDASCPATMPILVRQSPKTCSQPRTRKVKLS 125

Query: 74  LIEYMSLPASQYSVLDAERIERVDDNT------------FRSSMINRISCDSNSSNSEVQ 121
            +   S P    +  D E   R++D+               +    R S + N  +SE +
Sbjct: 126 TLSLSSDPDPDIN--DPEFKARLEDSNQDDQDEELDLEMEEADSAGRESGEGN-RDSEDE 182

Query: 122 QLTSDAFIEVSIEVPFAFRAFPV 144
            L +DA  ++ IEV      +PV
Sbjct: 183 GLLADA--DLPIEVLLRRYGYPV 203


>sp|A3QIL3|SECA_SHELP Protein translocase subunit SecA OS=Shewanella loihica (strain ATCC
           BAA-1088 / PV-4) GN=secA PE=3 SV=1
          Length = 907

 Score = 30.4 bits (67), Expect = 6.8,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 7/93 (7%)

Query: 59  ARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRSSMINRIS------CD 112
           A+RK   R   +++ L+E+  +   Q  V+ A+R E +D  + + +++N  +       D
Sbjct: 630 AQRKVEARNFDIRKQLLEFDDVANDQRQVVYAQRNELMDAESIQDTIVNIQADVVNGLID 689

Query: 113 SNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVE 145
                  V++L   A +E  +E  +A R  PV+
Sbjct: 690 QYIPPQSVEELWDIAGLETRLEQEYALR-MPVQ 721


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.129    0.354 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,942,683
Number of Sequences: 539616
Number of extensions: 1747559
Number of successful extensions: 5033
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5031
Number of HSP's gapped (non-prelim): 8
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)