Query 030167
Match_columns 182
No_of_seqs 65 out of 67
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 15:22:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p9v_A Uncharacterized protein 43.4 54 0.0018 24.3 5.8 29 147-175 126-154 (161)
2 1t17_A Conserved hypothetical 39.7 99 0.0034 21.9 6.7 30 145-174 117-146 (148)
3 1sf9_A YFHH hypothetical prote 37.4 14 0.00049 28.9 1.7 16 97-112 91-107 (128)
4 2yxy_A Hypothetical conserved 24.4 26 0.00088 27.0 1.2 16 97-112 73-90 (115)
5 2d68_A FOP, FGFR1OP; alpha hel 21.1 54 0.0019 23.5 2.3 25 155-179 9-33 (82)
6 2ns9_A Hypothetical protein AP 18.8 2.4E+02 0.0083 19.5 5.6 22 150-171 130-151 (157)
7 3sxm_A Transcriptional regulat 18.4 70 0.0024 22.3 2.4 24 144-167 64-87 (140)
8 2pcs_A Conserved protein; stru 17.8 2.7E+02 0.0093 19.6 5.9 21 150-170 122-142 (162)
9 1j27_A Hypothetical protein TT 16.6 1.2E+02 0.0043 22.1 3.4 32 127-166 6-37 (102)
10 3r8s_L 50S ribosomal protein L 15.3 19 0.00065 28.1 -1.4 80 66-152 48-139 (143)
No 1
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=43.36 E-value=54 Score=24.29 Aligned_cols=29 Identities=7% Similarity=0.292 Sum_probs=24.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 030167 147 IESTGTQVLDQILKLMLPRFMSQVSRSIC 175 (182)
Q Consensus 147 lE~tGN~lLq~VL~~i~prfL~QLl~DY~ 175 (182)
++...+.+++.+..+|+..|.+.+.+-|.
T Consensus 126 l~~~~~~~~~~~~~~~v~af~~ra~~~~~ 154 (161)
T 3p9v_A 126 LKLAISPVIKHEFNSLVDTYMANLKKAFL 154 (161)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788889999999999999998877775
No 2
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=39.67 E-value=99 Score=21.91 Aligned_cols=30 Identities=7% Similarity=0.115 Sum_probs=24.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 030167 145 EAIESTGTQVLDQILKLMLPRFMSQVSRSI 174 (182)
Q Consensus 145 ~alE~tGN~lLq~VL~~i~prfL~QLl~DY 174 (182)
+++...++.+++.+.++++..|.+...+-|
T Consensus 117 ~l~~~l~~~~~~~~~~~~~~~f~~r~~~~~ 146 (148)
T 1t17_A 117 ALLDAMLAANVDRAAGKLIACFEARAQQLH 146 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346678888899999999999888887665
No 3
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=37.36 E-value=14 Score=28.92 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=14.0
Q ss_pred Cccceeeeeee-eEEec
Q 030167 97 DDNTFRSSMIN-RISCD 112 (182)
Q Consensus 97 ~ddtFRa~miN-R~s~~ 112 (182)
++++|+.+++| .|.|.
T Consensus 91 ~~~~FkV~ylnGVFAWG 107 (128)
T 1sf9_A 91 TEDEFTISYLNGVFAWG 107 (128)
T ss_dssp SSCEEEEEEEETTEEEE
T ss_pred CCCeEEEEEEeeEEEee
Confidence 56779999999 99994
No 4
>2yxy_A Hypothetical conserved protein, GK0453; alpha and beta proteins (A+B) class, structural GENO unknown function, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=24.35 E-value=26 Score=26.99 Aligned_cols=16 Identities=6% Similarity=0.218 Sum_probs=13.1
Q ss_pred Cccc-eeeeeee-eEEec
Q 030167 97 DDNT-FRSSMIN-RISCD 112 (182)
Q Consensus 97 ~ddt-FRa~miN-R~s~~ 112 (182)
++++ |+.+++| .|.|.
T Consensus 73 ~~~~~F~V~ylnGVFAWG 90 (115)
T 2yxy_A 73 APGEYFKVRYLKGVFAWG 90 (115)
T ss_dssp EEEEEEEEEEEETTEEEE
T ss_pred CCCceEEEEEEeeEEEee
Confidence 3555 9999999 99994
No 5
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=21.07 E-value=54 Score=23.46 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhce
Q 030167 155 LDQILKLMLPRFMSQVSRSICYSFI 179 (182)
Q Consensus 155 Lq~VL~~i~prfL~QLl~DY~~w~~ 179 (182)
+|..+..=--|++..|+++|.+|+.
T Consensus 9 ~k~~~~s~~GrLi~~LVrEyLef~~ 33 (82)
T 2d68_A 9 LKKFLNTKDGRLVASLVAEFLQFFN 33 (82)
T ss_dssp HHHHHTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCcccHHHHHHHHHHHHHcC
Confidence 5566666667899999999999974
No 6
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=18.80 E-value=2.4e+02 Score=19.52 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 030167 150 TGTQVLDQILKLMLPRFMSQVS 171 (182)
Q Consensus 150 tGN~lLq~VL~~i~prfL~QLl 171 (182)
.+..+++.+.++++..|++.|.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~lk 151 (157)
T 2ns9_A 130 MGGRVLDSLARRMINDVISGVK 151 (157)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666666666665553
No 7
>3sxm_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.55A {Thermotoga maritima} PDB: 3sxk_A 3sxz_A
Probab=18.40 E-value=70 Score=22.28 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=20.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHH
Q 030167 144 VEAIESTGTQVLDQILKLMLPRFM 167 (182)
Q Consensus 144 ~~alE~tGN~lLq~VL~~i~prfL 167 (182)
..+++.+||.+|..++..+..++.
T Consensus 64 ~~i~~~s~N~~l~~~~~~l~~~~~ 87 (140)
T 3sxm_A 64 KLFIRASGNELIISLYEKIWDRID 87 (140)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Confidence 568899999999999988877654
No 8
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=17.77 E-value=2.7e+02 Score=19.64 Aligned_cols=21 Identities=24% Similarity=0.640 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 030167 150 TGTQVLDQILKLMLPRFMSQV 170 (182)
Q Consensus 150 tGN~lLq~VL~~i~prfL~QL 170 (182)
.+..|++.+..+++..|++.|
T Consensus 122 ~~~~l~~~~~~~~~~~~~~~l 142 (162)
T 2pcs_A 122 IGQRMLGGVAKLLISDFFKKI 142 (162)
T ss_dssp GCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544
No 9
>1j27_A Hypothetical protein TT1725; structural genomics, hypothetical protein from thermus therm HB8, MAD; 1.70A {Thermus thermophilus} SCOP: d.58.50.1
Probab=16.57 E-value=1.2e+02 Score=22.08 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=23.3
Q ss_pred ceEEEEEecCCCcccccHHHHHhhhHHHHHHHHHHHHHHH
Q 030167 127 AFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRF 166 (182)
Q Consensus 127 a~LeV~veVP~pF~l~P~~alE~tGN~lLq~VL~~i~prf 166 (182)
..+++.+.+| ..++-=+ ..++++++++++.+|
T Consensus 6 g~l~~~l~l~-~~SLKeK-------R~vvksl~~rlr~rF 37 (102)
T 1j27_A 6 GLYTARLETP-ARSLKEK-------RALIKPALERLKARF 37 (102)
T ss_dssp EEEEEEEECC-CSSHHHH-------HHHHHHHHHHHHHHS
T ss_pred EEEEEEEEEe-CCChHHh-------HHHHHHHHHHHhhcC
Confidence 3578888898 8766443 447888888887776
No 10
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ...
Probab=15.32 E-value=19 Score=28.13 Aligned_cols=80 Identities=18% Similarity=0.212 Sum_probs=44.1
Q ss_pred eeccCCcchhhhhcCcc--------chhhccCccceeecCccceee-eeee-eEEecCCCCCCCceeEeeeceEE--EEE
Q 030167 66 RVRQLQRPLIEYMSLPA--------SQYSVLDAERIERVDDNTFRS-SMIN-RISCDSNSSNSEVQQLTSDAFIE--VSI 133 (182)
Q Consensus 66 ~V~e~~rPL~eYLrqPa--------~~ysvLD~~riErL~ddtFRa-~miN-R~s~~~~~~~~~~~~L~gda~Le--V~v 133 (182)
-.+-.+.|| |+|+|- ..|+++|-.+|+++++++.-+ .+++ ++ - ... ...-.+-++-+|+ |+|
T Consensus 48 gFEGGQ~Pl--~rRlPK~GF~~~~~~~y~~VNL~~L~~~~~~~I~~~~L~~~gl--v-~~~-~~~VKVLg~Gel~~~l~V 121 (143)
T 3r8s_L 48 GFEGGQMPL--YRRLPKFGFTSRKAAITAEIRLSDLAKVEGGVVDLNTLKAANI--I-GIQ-IEFAKVILAGEVTTPVTV 121 (143)
T ss_dssp TCCTTSCCH--HHHSCCCCCCCSTGGGEEECCSSSSSCSSSSEEEHHHHGGGTS--S-CTT-CCEEECCCCSCCCSCCEE
T ss_pred ccccCCCcc--EEEccccccCCcccceeEEEEHHHhhhccCCeecHHHHHHcCc--c-ccC-CCceEEeeCCcccccEEE
Confidence 345556788 677773 368888888888887643321 1111 00 0 000 0112333444444 344
Q ss_pred ecCCCcccccHHHHHhhhH
Q 030167 134 EVPFAFRAFPVEAIESTGT 152 (182)
Q Consensus 134 eVP~pF~l~P~~alE~tGN 152 (182)
++ ..|+-.=+.+||++|.
T Consensus 122 ~a-~~~SksA~ekIEaAGG 139 (143)
T 3r8s_L 122 RG-LRVTKGARAAIEAAGG 139 (143)
T ss_dssp ES-SCCCHHHHHHHHTTTC
T ss_pred EE-EecCHHHHHHHHHcCC
Confidence 44 4678888899999985
Done!