BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030168
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 11/113 (9%)
Query: 3 EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEG 62
EK+ YFFS + N + AGSGYWK G ++ I G Q VGI+K L+F G
Sbjct: 73 EKEWYFFSP--RDRKYPNGSRPNRVAGSGYWKATGTDKIISTEG--QRVGIKKALVFYIG 128
Query: 63 KRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKK 115
K TKT W+MH+Y L+ + T+ + DWV+ RI++++ +K
Sbjct: 129 KAPKGTKTNWIMHEYRLIEPSRRNGSTK-------LDDWVLCRIYKKQSSAQK 174
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 11/113 (9%)
Query: 3 EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEG 62
EK+ YFFS + N + AGSGYWK G ++ I G Q VGI+K L+F G
Sbjct: 70 EKEWYFFSP--RDRKYPNGSRPNRVAGSGYWKATGTDKIISTEG--QRVGIKKALVFYIG 125
Query: 63 KRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKK 115
K TKT W+MH+Y L+ + T+ + DWV+ RI++++ +K
Sbjct: 126 KAPKGTKTNWIMHEYRLIEPSRRNGSTK-------LDDWVLCRIYKKQSSAQK 171
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 7 YFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGH 66
YFF+ + N + AAG+GYWK G ++ + G + +GI+K L+F GK
Sbjct: 72 YFFTP--RDRKYPNGSRPNRAAGNGYWKATGADKPVAPRG--RTLGIKKALVFYAGKAPR 127
Query: 67 ETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRK 110
KT W+MH+Y L + + + DWV+ R++ +K
Sbjct: 128 GVKTDWIMHEYRLADAGRAAAGAK--KGSLRLDDWVLCRLYNKK 169
>pdb|3H09|A Chain A, The Structure Of Haemophilus Influenzae Iga1 Protease
pdb|3H09|B Chain B, The Structure Of Haemophilus Influenzae Iga1 Protease
Length = 989
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 96 VIIGDWVVYRIFQRKKKPKKRGVVSSNNLNI-TKNSHK------NQLQVIDFSVIEADQ 147
++ D V Y+IF+ + K R V + N+ + KN+H N + +IDFSV++ D+
Sbjct: 1 ALVRDDVDYQIFRDFAENKGRFSVGATNVEVRDKNNHSLGNVLPNGIPMIDFSVVDVDK 59
>pdb|3STP|A Chain A, Crystal Structure Of A Putative Galactonate Dehydratase
Length = 412
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 74 MHQYHLVAIATNTNLTQ--PVFKMVIIGDWVVYRIFQ 108
MH YHL TN +++ PVF V +G+ + Y IF+
Sbjct: 342 MHNYHLTMANTNCPISEYFPVFD-VEVGNELFYYIFE 377
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,338,264
Number of Sequences: 62578
Number of extensions: 197731
Number of successful extensions: 432
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 424
Number of HSP's gapped (non-prelim): 5
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)