Query 030168
Match_columns 182
No_of_seqs 166 out of 801
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 15:24:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 7.4E-38 2.5E-42 252.1 11.1 105 1-111 66-170 (174)
2 1ut7_A No apical meristem prot 100.0 1.7E-37 5.7E-42 249.4 10.9 102 1-113 68-169 (171)
3 2zvv_Y Cyclin-dependent kinase 11.3 1E+02 0.0035 16.5 1.2 8 54-61 16-23 (26)
4 2oh5_A Polyhedrin, C-polyhedri 10.9 1.7E+02 0.0058 23.0 2.9 28 30-59 140-168 (248)
5 1wia_A Hypothetical ubiquitin- 7.0 4.1E+02 0.014 17.2 3.3 7 137-143 71-77 (95)
6 2h7a_A Hypothetical protein YC 7.0 1.7E+02 0.006 21.1 1.4 14 102-115 14-27 (110)
7 3hia_A Choline binding protein 6.7 6E+02 0.021 16.9 4.6 9 3-11 22-30 (94)
8 2xc8_A Gene 22 product; siphov 6.1 2.9E+02 0.0098 20.0 2.1 16 97-112 69-84 (146)
9 2y9w_C Lectin-like fold protei 6.0 5.4E+02 0.018 18.6 3.6 44 26-77 15-58 (150)
10 1ri9_A FYN-binding protein; SH 5.8 2.3E+02 0.0078 20.2 1.4 8 98-105 73-80 (102)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=7.4e-38 Score=252.11 Aligned_cols=105 Identities=30% Similarity=0.674 Sum_probs=82.7
Q ss_pred CCCceEEEeecCCCCccccCCCccccccCCeeeeecCCceeEEeCCCceEEEEEEEEEeeeccCCCCcccCeEEEEEEeC
Q 030168 1 MKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLV 80 (182)
Q Consensus 1 ~~e~ewYFFs~~rr~~k~~~g~R~~R~t~~GyWK~tG~~k~I~~~~~g~~VG~KktLvFy~gk~~~g~rT~WvMhEY~L~ 80 (182)
+++.+|||||+ +++||++|.|.+|+|++||||++|++++|. .+|.+||+||+|+||.|++|++.+|+|+||||+|.
T Consensus 66 ~g~~ewYFFs~--r~~ky~~g~R~nR~t~~G~WkatG~dk~I~--~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~ 141 (174)
T 3ulx_A 66 FGAREWYFFTP--RDRKYPNGSRPNRAAGNGYWKATGADKPVA--PRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLA 141 (174)
T ss_dssp SCSSEEEEEEE--CCC-----CCSCEEETTEEEEECSCCEEEC--CSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEEC
T ss_pred cCCceEEEEec--cccccCCCCCceeecCCceEccCCCCcEEe--eCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeC
Confidence 46789999999 899999999999999999999999999998 45899999999999999999999999999999999
Q ss_pred CcccCCCCCccccceeeeCcEEEEEEEEcCC
Q 030168 81 AIATNTNLTQPVFKMVIIGDWVVYRIFQRKK 111 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~VLCRIf~K~~ 111 (182)
........... .....++|||||||+|+.
T Consensus 142 ~~~~~~~~~~~--~~~~~~~wVlCrvf~K~~ 170 (174)
T 3ulx_A 142 DAGRAAAGAKK--GSLRLDDWVLCRLYNKKN 170 (174)
T ss_dssp SCC-------------CCSSEEEEEEEESCC
T ss_pred CCCCccccccc--CCCCCCCEEEEEEEEcCC
Confidence 87543211000 013578999999999874
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.7e-37 Score=249.45 Aligned_cols=102 Identities=37% Similarity=0.725 Sum_probs=79.0
Q ss_pred CCCceEEEeecCCCCccccCCCccccccCCeeeeecCCceeEEeCCCceEEEEEEEEEeeeccCCCCcccCeEEEEEEeC
Q 030168 1 MKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLV 80 (182)
Q Consensus 1 ~~e~ewYFFs~~rr~~k~~~g~R~~R~t~~GyWK~tG~~k~I~~~~~g~~VG~KktLvFy~gk~~~g~rT~WvMhEY~L~ 80 (182)
+++++|||||+ +++||++|.|.+|+|++||||++|++++|. .++.+||+||+|+||.|++|++.+|+|+||||+|.
T Consensus 68 ~g~~ewyFFs~--r~~k~~~g~R~~R~t~~G~Wk~tG~~k~I~--~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~ 143 (171)
T 1ut7_A 68 FGEKEWYFFSP--RDRKYPNGSRPNRVAGSGYWKATGTDKIIS--TEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLI 143 (171)
T ss_dssp SCSSEEEEEEE--CCC-------CCEEETTEEEEEEEEEEEEE--ETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEEC
T ss_pred cCCccEEEEec--cccccCCCCcccccCCCCEEeccCCCceEE--ecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcC
Confidence 46889999999 889999999999999999999999999998 45699999999999999999999999999999999
Q ss_pred CcccCCCCCccccceeeeCcEEEEEEEEcCCCC
Q 030168 81 AIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKP 113 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~VLCRIf~K~~~~ 113 (182)
....... ....++|||||||+|+...
T Consensus 144 ~~~~~~~-------~~~~~~~VlCrv~~k~~~~ 169 (171)
T 1ut7_A 144 EPSRRNG-------STKLDDWVLCRIYKKQSSA 169 (171)
T ss_dssp CCC---------------CCEEEEEEEECC---
T ss_pred CCccccC-------cccCCCEEEEEEEEcCCCC
Confidence 8753211 1367899999999998654
No 3
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=11.25 E-value=1e+02 Score=16.49 Aligned_cols=8 Identities=38% Similarity=0.866 Sum_probs=3.7
Q ss_pred EEEEEeee
Q 030168 54 RKTLIFCE 61 (182)
Q Consensus 54 KktLvFy~ 61 (182)
|+.|+|+.
T Consensus 16 KRRlvf~~ 23 (26)
T 2zvv_Y 16 KRRLIFSX 23 (26)
T ss_pred hceEEEEe
Confidence 34455544
No 4
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=10.94 E-value=1.7e+02 Score=22.97 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=21.4
Q ss_pred CeeeeecCC-ceeEEeCCCceEEEEEEEEEe
Q 030168 30 SGYWKPVGK-NRQILASGTKQVVGIRKTLIF 59 (182)
Q Consensus 30 ~GyWK~tG~-~k~I~~~~~g~~VG~KktLvF 59 (182)
+--|.+||. -+.|. .+|++||.-..|..
T Consensus 140 shpweatgikyrki~--~dgeivgyshyfel 168 (248)
T 2oh5_A 140 SHPWEATGIKYRKIK--RDGEIVGYSHYFEL 168 (248)
T ss_dssp CCSCBCCGGGCEEEE--ETTEEEEEEEEEEC
T ss_pred cCCccccCceEEEee--ecceEeeeeeeeec
Confidence 567999995 56676 78999998766543
No 5
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=7.04 E-value=4.1e+02 Score=17.20 Aligned_cols=7 Identities=29% Similarity=0.145 Sum_probs=3.2
Q ss_pred EEecccc
Q 030168 137 VIDFSVI 143 (182)
Q Consensus 137 ~~df~~~ 143 (182)
.+.++..
T Consensus 71 ~i~l~~~ 77 (95)
T 1wia_A 71 VIHCHRS 77 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEEC
Confidence 4555533
No 6
>2h7a_A Hypothetical protein YCGL; mixed alpha/beta/alpha sandwich structure, 3-layer (alpha/BE sandwich, beta-sheet layer antiparallel 3124 topology; NMR {Escherichia coli} SCOP: d.350.1.1
Probab=7.00 E-value=1.7e+02 Score=21.09 Aligned_cols=14 Identities=14% Similarity=0.394 Sum_probs=11.4
Q ss_pred EEEEEEEcCCCCCC
Q 030168 102 VVYRIFQRKKKPKK 115 (182)
Q Consensus 102 VLCRIf~K~~~~~~ 115 (182)
.||-||+.+++...
T Consensus 14 mlC~IYkS~KK~~~ 27 (110)
T 2h7a_A 14 MFCVIYRSSKRDQT 27 (110)
T ss_dssp CCEEEEEETTSSSC
T ss_pred EEEEEEecCCCCce
Confidence 79999998877554
No 7
>3hia_A Choline binding protein; beta hairpin; 2.38A {Streptococcus pneumoniae}
Probab=6.72 E-value=6e+02 Score=16.88 Aligned_cols=9 Identities=22% Similarity=0.671 Sum_probs=6.3
Q ss_pred CceEEEeec
Q 030168 3 EKKRYFFSN 11 (182)
Q Consensus 3 e~ewYFFs~ 11 (182)
++.||||-.
T Consensus 22 ~g~WYy~~~ 30 (94)
T 3hia_A 22 NGMWYFYNT 30 (94)
T ss_dssp TTEEEEECT
T ss_pred CCEEEEECC
Confidence 467888865
No 8
>2xc8_A Gene 22 product; siphoviridae, GRAM-positive phage, viral protein; 2.35A {Bacillus phage SPP1}
Probab=6.12 E-value=2.9e+02 Score=19.99 Aligned_cols=16 Identities=6% Similarity=0.243 Sum_probs=12.1
Q ss_pred eeCcEEEEEEEEcCCC
Q 030168 97 IIGDWVVYRIFQRKKK 112 (182)
Q Consensus 97 ~~~~~VLCRIf~K~~~ 112 (182)
..-.|.||+-|.-...
T Consensus 69 kkvswslckayldgeg 84 (146)
T 2xc8_A 69 KKVSWSLCKAYLDGEG 84 (146)
T ss_dssp CCEEEEEEEEETTTTC
T ss_pred eeeeHHHHHHhcCCcc
Confidence 4568999999986543
No 9
>2y9w_C Lectin-like fold protein, polyphenol oxidase; oxidoreductase, copper-containing, pigmentation, type-3 COPP protein; HET: PGE; 2.30A {Agaricus bisporus} PDB: 2y9x_E
Probab=6.04 E-value=5.4e+02 Score=18.59 Aligned_cols=44 Identities=14% Similarity=0.413 Sum_probs=22.8
Q ss_pred cccCCeeeeecCCceeEEeCCCceEEEEEEEEEeeeccCCCCcccCeEEEEE
Q 030168 26 IAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQY 77 (182)
Q Consensus 26 R~t~~GyWK~tG~~k~I~~~~~g~~VG~KktLvFy~gk~~~g~rT~WvMhEY 77 (182)
|.-.+..|-.......+. -..|. |..+.-..|......|++|-|
T Consensus 15 rilnganwannsatenla-tnsgt-------liifdqstpgqdadrwlihny 58 (150)
T 2y9w_C 15 RILNGANWANNSATENLA-TNSGT-------LIIFDQSTPGQDADRWLIHNY 58 (150)
T ss_dssp EEEETTEEEEECCC-------CCE-------EEEEESCCCSTTTTCEEEEEE
T ss_pred eeeccccccccchhhhhh-cCCce-------EEEEcCCCCCCcchhhhhhhc
Confidence 444456677665544443 13333 333444445556788999987
No 10
>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=5.83 E-value=2.3e+02 Score=20.17 Aligned_cols=8 Identities=25% Similarity=0.094 Sum_probs=6.8
Q ss_pred eCcEEEEE
Q 030168 98 IGDWVVYR 105 (182)
Q Consensus 98 ~~~~VLCR 105 (182)
.++|+|||
T Consensus 73 e~~wwLcR 80 (102)
T 1ri9_A 73 DDTKVLCR 80 (102)
T ss_dssp SSSEEEEE
T ss_pred CCCEEEEE
Confidence 46999998
Done!