BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030169
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FP4|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gtp
pdb|2FPI|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol
pdb|2FPP|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol With Chloride Ions
Length = 305
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 71/113 (62%), Gaps = 1/113 (0%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPV 104
S AS ++VDKNT+VICQG TGK GTFH++QA+EY HLGLPV
Sbjct: 1 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKT-HLGLPV 59
Query: 105 FNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 157
FN+V EAK +T A ASVIYVPPPF + LVVCITEGIPQ DMV
Sbjct: 60 FNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMV 112
>pdb|2FPG|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gdp
Length = 305
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 71/113 (62%), Gaps = 1/113 (0%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPV 104
S AS ++VDKNT+VICQG TGK GTFH++QA+EY HLGLPV
Sbjct: 1 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKT-HLGLPV 59
Query: 105 FNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 157
FN+V EAK +T A ASVIYVPPPF + LVVCITEGIPQ DMV
Sbjct: 60 FNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMV 112
>pdb|1EUD|A Chain A, Crystal Structure Of Phosphorylated Pig Heart,
Gtp-Specific Succinyl-Coa Synthetase
Length = 311
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 71/113 (62%), Gaps = 1/113 (0%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPV 104
S AS ++VDKNT+VICQG TGK GTFH++QA+EY HLGLPV
Sbjct: 7 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKT-HLGLPV 65
Query: 105 FNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 157
FN+V EAK +T A ASVIYVPPPF + LVVCITEGIPQ DMV
Sbjct: 66 FNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMV 118
>pdb|1EUC|A Chain A, Crystal Structure Of Dephosphorylated Pig Heart, Gtp-
Specific Succinyl-Coa Synthetase
Length = 311
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 71/113 (62%), Gaps = 1/113 (0%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPV 104
S AS ++VDKNT+VICQG TGK GTFH++QA+EY HLGLPV
Sbjct: 7 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKT-HLGLPV 65
Query: 105 FNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 157
FN+V EAK +T A ASVIYVPPPF + LVVCITEGIPQ DMV
Sbjct: 66 FNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMV 118
>pdb|2NU7|A Chain A, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|D Chain D, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPVFNSVAEA 111
++ +DKNT+VICQG TG GTFH+EQAI Y HLGLPVFN+V EA
Sbjct: 1 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTT-HLGLPVFNTVREA 59
Query: 112 KAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 157
A T A ASVIYVP PF + L++ ITEGIP DM+
Sbjct: 60 VAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 105
>pdb|2NUA|A Chain A, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NUA|D Chain D, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPVFNSVAEA 111
++ +DKNT+VICQG TG GTFH+EQAI Y HLGLPVFN+V EA
Sbjct: 1 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTT-HLGLPVFNTVREA 59
Query: 112 KAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 157
A T A ASVIYVP PF + L++ ITEGIP DM+
Sbjct: 60 VAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 105
>pdb|2NU8|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|D Chain D, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPVFNSVAEA 111
++ +DKNT+VICQG TG GTFH+EQAI Y HLGLPVFN+V EA
Sbjct: 1 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTT-HLGLPVFNTVREA 59
Query: 112 KAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 157
A T A ASVIYVP PF + L++ ITEGIP DM+
Sbjct: 60 VAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 105
>pdb|2NU9|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|D Chain D, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|F Chain F, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|H Chain H, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
Length = 288
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPVFNSVAEA 111
++ +DKNT+VICQG TG GTFH+EQAI Y HLGLPVFN+V EA
Sbjct: 1 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTT-HLGLPVFNTVREA 59
Query: 112 KAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 157
A T A ASVIYVP PF + L++ ITEGIP DM+
Sbjct: 60 VAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 105
>pdb|2NU6|A Chain A, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU6|D Chain D, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPVFNSVAEA 111
++ +DKNT+VICQG TG GTFH+EQAI Y HLGLPVFN+V EA
Sbjct: 1 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTT-HLGLPVFNTVREA 59
Query: 112 KAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 157
A T A ASVIYVP PF + L++ ITEGIP DM+
Sbjct: 60 VAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 105
>pdb|1CQI|A Chain A, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|D Chain D, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQJ|A Chain A, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|D Chain D, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
Length = 286
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPVFNSVAEA 111
++ +DKNT+VICQG TG GTFH+EQAI Y HLGLPVFN+V EA
Sbjct: 1 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTT-HLGLPVFNTVREA 59
Query: 112 KAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 157
A T A ASVIYVP PF + L++ ITEGIP DM+
Sbjct: 60 VAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 105
>pdb|1JKJ|A Chain A, E. Coli Scs
pdb|1JKJ|D Chain D, E. Coli Scs
pdb|1JLL|A Chain A, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
pdb|1JLL|D Chain D, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
Length = 288
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPVFNSVAEA 111
++ +DKNT+VICQG TG GTFH+EQAI Y HLGLPVFN+V EA
Sbjct: 1 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTT-HLGLPVFNTVREA 59
Query: 112 KAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 157
A T A ASVIYVP PF + L++ ITEGIP DM+
Sbjct: 60 VAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 105
>pdb|2SCU|A Chain A, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|D Chain D, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|1SCU|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|1SCU|D Chain D, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
Length = 288
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPVFNSVAEA 111
++ +DKNT+VICQG TG GTFH+EQAI Y HLGLPVFN+V EA
Sbjct: 1 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTT-HLGLPVFNTVREA 59
Query: 112 KAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 157
A T A ASVIYVP PF + L++ ITEGIP DM+
Sbjct: 60 VAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 105
>pdb|2YV1|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain
From Methanocaldococcus Jannaschii Dsm 2661
Length = 294
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPVFNSVAEAK 112
+ +D+NT+ I QGITG+ G+FHT++ +E H G+PVF++V EA
Sbjct: 8 ILLDENTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVH-GVPVFDTVKEAV 66
Query: 113 AETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHD 155
ET ANASVI+VP PF ++L+V ITE IP HD
Sbjct: 67 KETDANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHD 109
>pdb|2YV2|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain
From Aeropyrum Pernix K1
Length = 297
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPVFNSVAEA 111
AV VD TRV+ QGITG+ G+FH + +EY H G+PV++SV EA
Sbjct: 7 AVLVDSETRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVH-GVPVYDSVKEA 65
Query: 112 KAE-TKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV--INFTR 162
AE + N S+++VP PF + LVV ITEGIP HD + +N+ R
Sbjct: 66 LAEHPEINTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYAR 119
>pdb|3UFX|A Chain A, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|D Chain D, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|F Chain F, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|H Chain H, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
Length = 296
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPVFNSVAEAK 112
+ V+K TRV+ QGITG+ G FHT+Q + Y E LG+PV+++V EA
Sbjct: 2 ILVNKETRVLVQGITGREGQFHTKQMLSYGTKIVAGVTPGKGGM-EVLGVPVYDTVKEAV 60
Query: 113 AETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 157
A + +AS+I+VP P + L+V ITEGIP DMV
Sbjct: 61 AHHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMV 105
>pdb|1OI7|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase Alpha
Subunit From Thermus Thermophilus
Length = 288
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYXXXXXXXXXXXXXXXXEHLGLPVFNSVAEAK 112
+ V++ TRV+ QGITG+ G FHT+Q + Y E LG+PV+++V EA
Sbjct: 2 ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGM-EVLGVPVYDTVKEAV 60
Query: 113 AETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 157
A + +AS+I+VP P + L+V ITEGIP DMV
Sbjct: 61 AHHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMV 105
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 1 MARQALAKLIGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYG 43
MAR+ +AKLIG + PS + H R S A ++R+YG
Sbjct: 824 MARRKIAKLIGDV----PSVEGMLRHCRFSGGAT-TTNNRSYG 861
>pdb|3MMP|G Chain G, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|F Chain F, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 589
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 1 MARQALAKLIGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYG 43
MAR+ +AKLIG + PS + H R S A ++R+YG
Sbjct: 130 MARRKIAKLIGDV----PSVEGMLRHCRFSGGAT-TTNNRSYG 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.131 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,995,481
Number of Sequences: 62578
Number of extensions: 115320
Number of successful extensions: 244
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 18
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)