BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030169
(182 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P68209|SUCA1_ARATH Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial
OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1
Length = 347
Score = 217 bits (553), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/161 (73%), Positives = 130/161 (80%), Gaps = 10/161 (6%)
Query: 1 MARQALAKLIGSIGS--RRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHP--AVFVD 56
M+RQ +A+LIGS+ S RR ST S + S SR++ A+ HP AVFVD
Sbjct: 1 MSRQ-VARLIGSLSSKARRCSTGGS-EVFPSCQSLTSLTQSRSF---ASDPHPPAAVFVD 55
Query: 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK 116
KNTRV+CQGITGKNGTFHTEQAIEYGTKMV G VTPKKGGTEHLGLPVFNSVAEAKA+TK
Sbjct: 56 KNTRVLCQGITGKNGTFHTEQAIEYGTKMVAG-VTPKKGGTEHLGLPVFNSVAEAKADTK 114
Query: 117 ANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
ANASVIYVP PFAAAAIME +EAELDL+VCITEGIPQHDMV
Sbjct: 115 ANASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMV 155
>sp|Q8GTQ9|SUCA1_SOLLC Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial
OS=Solanum lycopersicum GN=SCOA PE=1 SV=1
Length = 332
Score = 216 bits (551), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 115/157 (73%), Positives = 123/157 (78%), Gaps = 15/157 (9%)
Query: 1 MARQALAKLIGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTR 60
MARQA KLI ++ + +SS H R S A+ PAVFVDKNTR
Sbjct: 1 MARQA-TKLIANLSKK---LSSSNPHTRCSEQTV----------WIGAAPPAVFVDKNTR 46
Query: 61 VICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANAS 120
VICQGITGKNGTFHTEQAIEYGTKMV GGVTPKKGGTEHLGLPVFN+V EAKAETKANAS
Sbjct: 47 VICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGTEHLGLPVFNTVEEAKAETKANAS 105
Query: 121 VIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
VIYVPPPFAAAAIME +EAELDL+VCITEGIPQHDMV
Sbjct: 106 VIYVPPPFAAAAIMEGLEAELDLIVCITEGIPQHDMV 142
>sp|Q8LAD2|SUCA2_ARATH Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial
OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2
Length = 341
Score = 206 bits (524), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 110/157 (70%), Positives = 124/157 (78%), Gaps = 7/157 (4%)
Query: 1 MARQALAKLIGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTR 60
M+RQ + +L+GS+ + S L+S SR++G++ AVFVDKNTR
Sbjct: 1 MSRQ-VTRLLGSLRHSGGGCSGSSKVCSLTS----LVQSRSFGTTPPPPA-AVFVDKNTR 54
Query: 61 VICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANAS 120
VICQGITGKNGTFHTEQAIEYGTKMV G VTPKKGGTEHLGLPVFN+VAEAKAETKANAS
Sbjct: 55 VICQGITGKNGTFHTEQAIEYGTKMVAG-VTPKKGGTEHLGLPVFNTVAEAKAETKANAS 113
Query: 121 VIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
VIYVP PFAAAAIME + AELDL+VCITEGIPQHDMV
Sbjct: 114 VIYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMV 150
>sp|Q6DQL1|SUCA2_SOLLC Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial
OS=Solanum lycopersicum PE=1 SV=1
Length = 337
Score = 196 bits (498), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 118/158 (74%), Positives = 128/158 (81%), Gaps = 12/158 (7%)
Query: 1 MARQALAKLIGSIGSR-RPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNT 59
MARQA +LI ++ ++ PS+ + SA+P H Y S PAVFVDKNT
Sbjct: 1 MARQA-TRLISNLSTKLNPSSPTM--------SASPLWHQYRYFGSPPPP-PAVFVDKNT 50
Query: 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA 119
RVICQGITGKNGTFHTEQAIEYGTKMV GGVTPKKGGTEHLGLPVFN+VAEAK ETKANA
Sbjct: 51 RVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGTEHLGLPVFNTVAEAKVETKANA 109
Query: 120 SVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
SV+YVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV
Sbjct: 110 SVVYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 147
>sp|Q6ZL94|SUCA_ORYSJ Probable succinyl-CoA ligase [ADP-forming] subunit alpha,
mitochondrial OS=Oryza sativa subsp. japonica
GN=Os07g0577700 PE=1 SV=1
Length = 331
Score = 193 bits (491), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/130 (86%), Positives = 120/130 (92%), Gaps = 2/130 (1%)
Query: 29 LSSSAAPAAHSRNYGSSAAAS-HPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVV 87
L S+A+ H+R + ++AAA+ PAVFVDK+TRVICQGITGKNGTFHTEQAIEYGT MV
Sbjct: 12 LGSAASRLLHARGFAAAAAAAPSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTTMV- 70
Query: 88 GGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCI 147
GGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCI
Sbjct: 71 GGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCI 130
Query: 148 TEGIPQHDMV 157
TEGIPQHDMV
Sbjct: 131 TEGIPQHDMV 140
>sp|Q9WUM5|SUCA_MOUSE Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Mus musculus GN=Suclg1 PE=1 SV=4
Length = 346
Score = 171 bits (432), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 80/113 (70%), Positives = 95/113 (84%), Gaps = 1/113 (0%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPV 104
S AS +++DKNT++ICQG TGK GTFH++QA+EYGTK+V GG TP KGG +HLGLPV
Sbjct: 42 SYTASRKHIYIDKNTKIICQGFTGKQGTFHSQQALEYGTKLV-GGTTPGKGGQKHLGLPV 100
Query: 105 FNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
FN+V EAK +T A ASVIYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMV
Sbjct: 101 FNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMV 153
>sp|P36967|SUCA_DICDI Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Dictyostelium discoideum GN=scsA PE=1 SV=3
Length = 315
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/119 (66%), Positives = 98/119 (82%), Gaps = 1/119 (0%)
Query: 39 SRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE 98
+RN+G ++ P+V ++K+T+VICQG TG GTFH++QAIEYGT MV GGV+P KGG +
Sbjct: 8 ARNFGKRFFSTKPSVLINKHTKVICQGFTGNQGTFHSKQAIEYGTNMV-GGVSPGKGGQK 66
Query: 99 HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
HL LPVFN+V EAK T ANA+VIYVPPP AAAAI EA++AE++LVVCITEGIPQ DMV
Sbjct: 67 HLDLPVFNTVKEAKEATGANATVIYVPPPHAAAAIKEAIDAEMELVVCITEGIPQQDMV 125
>sp|Q9YGD2|SUCA_COLLI Succinyl-CoA ligase subunit alpha, mitochondrial (Fragment)
OS=Columba livia GN=SUCLG1 PE=1 SV=1
Length = 306
Score = 164 bits (416), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/113 (68%), Positives = 95/113 (84%), Gaps = 1/113 (0%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPV 104
S +AS +++ KNT+VICQG TGK GTFH++QA++YGT +V GG++P KGG HLGLPV
Sbjct: 2 SYSASRKNLYISKNTKVICQGFTGKQGTFHSQQALDYGTNLV-GGISPGKGGKTHLGLPV 60
Query: 105 FNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
FNSV EAK +T A+A+VIYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMV
Sbjct: 61 FNSVKEAKEQTGASATVIYVPPPFAAAAINEAIDAEMPLVVCITEGIPQQDMV 113
>sp|Q1RH56|SUCD_RICBR Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia
bellii (strain RML369-C) GN=sucD PE=3 SV=1
Length = 291
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
A+ V+K T+VICQG TG GTFH+EQAI YGTKMV GGVTP KGG HL LP++N+V EA
Sbjct: 2 AILVNKKTKVICQGFTGSQGTFHSEQAIAYGTKMV-GGVTPGKGGKTHLDLPIYNTVHEA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
KA+T ANASVIYVPPPFAA +I+EA++A +++VVCITEGIP DMV
Sbjct: 61 KAKTGANASVIYVPPPFAADSILEAIDAGIEIVVCITEGIPVLDMV 106
>sp|Q4ULQ8|SUCD_RICFE Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia felis
(strain ATCC VR-1525 / URRWXCal2) GN=sucD PE=3 SV=1
Length = 292
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 88/106 (83%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
A+ ++K T+VICQG TG GTFH+EQAI YGT MV GGVTP KGG HL LPV+N+V EA
Sbjct: 2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMV-GGVTPGKGGHTHLDLPVYNTVHEA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
KA+T ANASVIYVPP FAA +I+EA++AE+++VVCITEGIP DMV
Sbjct: 61 KAKTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMV 106
>sp|P13086|SUCA_RAT Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Rattus norvegicus GN=Suclg1 PE=2 SV=2
Length = 346
Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/113 (68%), Positives = 91/113 (80%), Gaps = 1/113 (0%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPV 104
S AS +++DKNT+VICQG TGK GTFH++QA+EYGTK+V G K G +HLGLPV
Sbjct: 42 SYTASRKNIYIDKNTKVICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGG-KKHLGLPV 100
Query: 105 FNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
FN+V EAK +T A ASVIYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMV
Sbjct: 101 FNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMV 153
>sp|Q9AKE1|SUCD_RICTY Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia typhi
(strain ATCC VR-144 / Wilmington) GN=sucD PE=3 SV=1
Length = 292
Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/106 (67%), Positives = 88/106 (83%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
A+ ++K T+VICQG TG GTFH+EQAI YGT MV GGVTP KGG HL LPV+N+V EA
Sbjct: 2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMV-GGVTPGKGGHTHLNLPVYNTVHEA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
KA+T ANASVIYVPP FAA +I+EA++A++++VVCITEGIP DMV
Sbjct: 61 KAKTDANASVIYVPPGFAADSILEAIDAKIEVVVCITEGIPVLDMV 106
>sp|P53597|SUCA_HUMAN Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Homo sapiens GN=SUCLG1 PE=1 SV=4
Length = 346
Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/113 (72%), Positives = 94/113 (83%), Gaps = 1/113 (0%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPV 104
S AS ++VDKNT++ICQG TGK GTFH++QA+EYGTK+V GG TP KGG HLGLPV
Sbjct: 42 SYTASRQHLYVDKNTKIICQGFTGKQGTFHSQQALEYGTKLV-GGTTPGKGGQTHLGLPV 100
Query: 105 FNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
FN+V EAK +T A ASVIYVPPPFAAAAI EA+EAE+ LVVCITEGIPQ DMV
Sbjct: 101 FNTVKEAKEQTGATASVIYVPPPFAAAAINEAIEAEIPLVVCITEGIPQQDMV 153
>sp|Q92I22|SUCD_RICCN Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia
conorii (strain ATCC VR-613 / Malish 7) GN=sucD PE=3
SV=1
Length = 292
Score = 150 bits (380), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 88/106 (83%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
A+ ++K T+VICQG TG GTFH+EQAI YGT MV GGVTP KGG HL LPV+N+V EA
Sbjct: 2 AILINKKTQVICQGFTGLQGTFHSEQAIAYGTNMV-GGVTPGKGGHTHLDLPVYNTVHEA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
KA+T ANASVIYVPP FAA +I+EA++AE+++VVCITEGIP DMV
Sbjct: 61 KAKTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMV 106
>sp|O08371|SUCD_RICPR Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia
prowazekii (strain Madrid E) GN=sucD PE=3 SV=1
Length = 292
Score = 150 bits (378), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 71/106 (66%), Positives = 88/106 (83%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
A+ ++K T+VICQG TG GTFH+EQAI YGT MV GGVTP KGG HL LPV+N+V EA
Sbjct: 2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMV-GGVTPGKGGHTHLNLPVYNTVHEA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
KA+T ANASVIYVPP FAA +I+EA++A++++VVCITEGIP DM+
Sbjct: 61 KAKTGANASVIYVPPGFAADSILEAIDAKIEVVVCITEGIPVLDMI 106
>sp|O19069|SUCA_PIG Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Sus scrofa GN=SUCLG1 PE=1 SV=2
Length = 346
Score = 149 bits (377), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 78/113 (69%), Positives = 90/113 (79%), Gaps = 1/113 (0%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPV 104
S AS ++VDKNT+VICQG TGK GTFH++QA+EYGT +V G KGG HLGLPV
Sbjct: 42 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTP-GKGGKTHLGLPV 100
Query: 105 FNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
FN+V EAK +T A ASVIYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMV
Sbjct: 101 FNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMV 153
>sp|Q58DR8|SUCA_BOVIN Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Bos taurus GN=SUCLG1 PE=2 SV=3
Length = 346
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/139 (58%), Positives = 98/139 (70%), Gaps = 1/139 (0%)
Query: 19 STASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQA 78
S +S ++ RL S A + S S ++VD+NT++ICQG TGK GTFH++QA
Sbjct: 16 SGSSGLAAARLLSRAFLLQQNGIRHCSYTTSRKHLYVDRNTKIICQGFTGKQGTFHSQQA 75
Query: 79 IEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 138
+EYGTK+V G K G HLGLPVFN+V EAK +T A ASVIYVPPPFA AAI EA+E
Sbjct: 76 LEYGTKLVGGTTPGKGG-KTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAVAAIDEAIE 134
Query: 139 AELDLVVCITEGIPQHDMV 157
AE+ LVVCITEGIPQ DMV
Sbjct: 135 AEVSLVVCITEGIPQQDMV 153
>sp|P53591|SUCD_COXBU Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Coxiella
burnetii (strain RSA 493 / Nine Mile phase I) GN=sucD
PE=3 SV=2
Length = 294
Score = 147 bits (372), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 86/106 (81%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
++ +DK TRV+CQG TGK GTFH+EQAIEYGT+MV GGVTP KGG HLGLP+FNSV EA
Sbjct: 2 SILIDKETRVLCQGFTGKQGTFHSEQAIEYGTQMV-GGVTPGKGGQSHLGLPIFNSVHEA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
ET A+A++I+VP PF +I+EA++A + LVVCITEGIP DM+
Sbjct: 61 VEETSADATMIFVPAPFCKDSIIEAVDAGVRLVVCITEGIPVLDML 106
>sp|P0AGE9|SUCD_ECOLI Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli
(strain K12) GN=sucD PE=1 SV=2
Length = 289
Score = 146 bits (369), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 70/106 (66%), Positives = 84/106 (79%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
++ +DKNT+VICQG TG GTFH+EQAI YGTKMV GGVTP KGGT HLGLPVFN+V EA
Sbjct: 2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMV-GGVTPGKGGTTHLGLPVFNTVREA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
A T A ASVIYVP PF +I+EA++A + L++ ITEGIP DM+
Sbjct: 61 VAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 106
>sp|P0AGF0|SUCD_ECOL6 Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=sucD PE=3
SV=2
Length = 289
Score = 146 bits (369), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 70/106 (66%), Positives = 84/106 (79%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
++ +DKNT+VICQG TG GTFH+EQAI YGTKMV GGVTP KGGT HLGLPVFN+V EA
Sbjct: 2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMV-GGVTPGKGGTTHLGLPVFNTVREA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
A T A ASVIYVP PF +I+EA++A + L++ ITEGIP DM+
Sbjct: 61 VAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 106
>sp|P0AGF1|SUCD_ECO57 Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli
O157:H7 GN=sucD PE=3 SV=2
Length = 289
Score = 146 bits (369), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 70/106 (66%), Positives = 84/106 (79%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
++ +DKNT+VICQG TG GTFH+EQAI YGTKMV GGVTP KGGT HLGLPVFN+V EA
Sbjct: 2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMV-GGVTPGKGGTTHLGLPVFNTVREA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
A T A ASVIYVP PF +I+EA++A + L++ ITEGIP DM+
Sbjct: 61 VAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 106
>sp|P80865|SUCD_BACSU Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Bacillus
subtilis (strain 168) GN=sucD PE=1 SV=3
Length = 300
Score = 145 bits (367), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 86/106 (81%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
+VF++K+TRVI QGITG FHT+Q +EYGT +VGGVTP KGGTE G+PVFN+VAEA
Sbjct: 2 SVFINKDTRVIVQGITGSTALFHTKQMLEYGTN-IVGGVTPGKGGTEAEGVPVFNTVAEA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
T ANASVIYVP PFAA AIMEA++AELDLV+CITE IP DMV
Sbjct: 61 VQTTGANASVIYVPAPFAADAIMEAVDAELDLVICITEHIPVLDMV 106
>sp|Q51567|SUCD_PSEAE Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=sucD PE=3 SV=2
Length = 295
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
+V ++K+T+VICQG TG GTFH+EQAI YGTKMV GGVTP KGGT HLGLPVFN+V EA
Sbjct: 2 SVLINKDTKVICQGFTGSQGTFHSEQAIAYGTKMV-GGVTPGKGGTTHLGLPVFNTVKEA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAFL 171
T A ASVIYVP PF +I+EA + L+VCITEGIP DM+ + + L V +
Sbjct: 61 VEATGAEASVIYVPAPFCKDSILEAAFGGIKLIVCITEGIPTLDMLDAKVKCDELGVRLI 120
Query: 172 N 172
Sbjct: 121 G 121
>sp|P45102|SUCD_HAEIN Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=sucD PE=3 SV=1
Length = 293
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 85/113 (75%), Gaps = 1/113 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
A+ +DKNT+VICQG TG GTFH+EQA+ YGT++V GGV+P KGGT HLGLPVFN+V EA
Sbjct: 2 AILIDKNTKVICQGFTGGQGTFHSEQALAYGTQLV-GGVSPNKGGTTHLGLPVFNTVREA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVN 164
T A+VIYVP F AI+EA++A + L+VCITEGIP DM+ ++N
Sbjct: 61 VENTGVTATVIYVPASFCKDAIIEAIDAGIQLIVCITEGIPTLDMLKVKQKLN 113
>sp|P53596|SUCA_CAEEL Probable succinyl-CoA ligase [ADP/GDP-forming] subunit alpha,
mitochondrial OS=Caenorhabditis elegans GN=C05G5.4 PE=3
SV=1
Length = 322
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/103 (66%), Positives = 83/103 (80%), Gaps = 1/103 (0%)
Query: 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE 114
++K+T+VI QG TGK GTFH +Q +EY TK VVGGV K GTEHLGLPVF +V+EA+ +
Sbjct: 30 INKDTKVIVQGFTGKQGTFHGKQMLEYNTK-VVGGVNANKAGTEHLGLPVFKNVSEARNK 88
Query: 115 TKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
T A+ASVIYVP A +AI EAM+AE+ LVVCITEGIPQHDMV
Sbjct: 89 TGADASVIYVPASAAGSAIEEAMDAEIPLVVCITEGIPQHDMV 131
>sp|Q94522|SUCA_DROME Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Drosophila melanogaster GN=Scsalpha PE=2 SV=3
Length = 328
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/103 (71%), Positives = 92/103 (89%), Gaps = 1/103 (0%)
Query: 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE 114
++ ++RVICQG TGK GTFH++QA+EYGTK+V GG++PKKGGT+HLGLPVF SVAEAK
Sbjct: 34 LNGDSRVICQGFTGKQGTFHSQQALEYGTKLV-GGISPKKGGTQHLGLPVFASVAEAKKA 92
Query: 115 TKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
T +A+VIYVPPP AAAAI+EA+EAE+ L+VCITEG+PQHDMV
Sbjct: 93 TDPHATVIYVPPPGAAAAIIEALEAEIPLIVCITEGVPQHDMV 135
>sp|Q9P727|SUCA_NEUCR Probable succinyl-CoA ligase [ADP-forming] subunit alpha,
mitochondrial OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=8D4.130 PE=3 SV=1
Length = 333
Score = 137 bits (345), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 2/130 (1%)
Query: 28 RLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVV 87
+L + A+S N S AA+ + ++ +T+V+ QG TGK GTFH +QAIEYGT VV
Sbjct: 13 KLVQQLSKRAYSSNS-SPYAATINNLKINGDTKVLFQGFTGKQGTFHAQQAIEYGTN-VV 70
Query: 88 GGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCI 147
GG PKK G HL PVF++V+EA ET A A+ I+VPPP AAA I EA++AE+ L VCI
Sbjct: 71 GGTNPKKAGQTHLDRPVFSNVSEAVKETGATATAIFVPPPLAAAGIEEALQAEIPLAVCI 130
Query: 148 TEGIPQHDMV 157
TEGIPQHDMV
Sbjct: 131 TEGIPQHDMV 140
>sp|O28098|SUCD2_ARCFU Succinyl-CoA ligase [ADP-forming] subunit alpha 2 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=sucD2 PE=3 SV=1
Length = 287
Score = 137 bits (345), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 85/113 (75%), Gaps = 1/113 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
A+ VD+ T+V+ QGITG G FHTE+ + YGTK +V GVTP KGGTE LG+PV++SV EA
Sbjct: 2 AIIVDERTKVVVQGITGYQGKFHTERMLNYGTK-IVAGVTPGKGGTEVLGVPVYDSVKEA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVN 164
E ANASVI+VP PFAA A+MEA +A + ++VCITEGIP HD + + RV
Sbjct: 61 VREADANASVIFVPAPFAADAVMEAADAGIKVIVCITEGIPVHDELKMYWRVK 113
>sp|O67547|SUCD_AQUAE Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Aquifex aeolicus
(strain VF5) GN=sucD PE=3 SV=1
Length = 305
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/107 (61%), Positives = 85/107 (79%), Gaps = 1/107 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
A+ V+K+T+V+ QGITGK G+FH +Q EYGT+ VV GVTP KGG E G+PVFN+V EA
Sbjct: 2 AILVNKDTKVVVQGITGKEGSFHAKQCKEYGTQ-VVAGVTPGKGGMEVEGIPVFNTVKEA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVI 158
ET AN S+I+VP PFAA AI+EA++A ++LVVCITEGIP DM++
Sbjct: 61 VKETGANCSLIFVPAPFAADAIVEALDAGIELVVCITEGIPVKDMMM 107
>sp|Q6GHI9|SUCD_STAAR Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain MRSA252) GN=sucD PE=3 SV=1
Length = 302
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
+VF+DKNT+V+ QGITG FHT+Q ++YGTK +V GVTP KGG G+PVFN+V EA
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTK-IVAGVTPGKGGQVVEGVPVFNTVEEA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
K ET A SVIYVP PFAA +I+EA +A+LD+V+CITE IP DMV
Sbjct: 61 KNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMV 106
>sp|Q8NX01|SUCD_STAAW Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain MW2) GN=sucD PE=3 SV=1
Length = 302
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
+VF+DKNT+V+ QGITG FHT+Q ++YGTK +V GVTP KGG G+PVFN+V EA
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTK-IVAGVTPGKGGQVVEGVPVFNTVEEA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
K ET A SVIYVP PFAA +I+EA +A+LD+V+CITE IP DMV
Sbjct: 61 KNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMV 106
>sp|Q6G9W7|SUCD_STAAS Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain MSSA476) GN=sucD PE=3 SV=1
Length = 302
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
+VF+DKNT+V+ QGITG FHT+Q ++YGTK +V GVTP KGG G+PVFN+V EA
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTK-IVAGVTPGKGGQVVEGVPVFNTVEEA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
K ET A SVIYVP PFAA +I+EA +A+LD+V+CITE IP DMV
Sbjct: 61 KNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMV 106
>sp|P99070|SUCD_STAAN Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain N315) GN=sucD PE=1 SV=1
Length = 302
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
+VF+DKNT+V+ QGITG FHT+Q ++YGTK +V GVTP KGG G+PVFN+V EA
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTK-IVAGVTPGKGGQVVEGVPVFNTVEEA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
K ET A SVIYVP PFAA +I+EA +A+LD+V+CITE IP DMV
Sbjct: 61 KNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMV 106
>sp|P66866|SUCD_STAAM Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=sucD PE=1 SV=1
Length = 302
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
+VF+DKNT+V+ QGITG FHT+Q ++YGTK +V GVTP KGG G+PVFN+V EA
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTK-IVAGVTPGKGGQVVEGVPVFNTVEEA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
K ET A SVIYVP PFAA +I+EA +A+LD+V+CITE IP DMV
Sbjct: 61 KNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMV 106
>sp|Q5HGI6|SUCD_STAAC Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain COL) GN=sucD PE=3 SV=1
Length = 302
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
+VF+DKNT+V+ QGITG FHT+Q ++YGTK +V GVTP KGG G+PVFN+V EA
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTK-IVAGVTPGKGGQVVEGVPVFNTVEEA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
K ET A SVIYVP PFAA +I+EA +A+LD+V+CITE IP DMV
Sbjct: 61 KNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMV 106
>sp|Q5HPU4|SUCD_STAEQ Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=sucD PE=3
SV=1
Length = 302
Score = 132 bits (333), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 83/106 (78%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
+VF+DKNT+V+ QGITG FHT+Q ++YGT+ +V GVTP KGG G+PV+N+V EA
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQ-IVAGVTPGKGGQVVEGVPVYNTVEEA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
K ET AN SV+YVP PFAA +I+EA +A+LD+V+CITE IP DMV
Sbjct: 61 KNETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMV 106
>sp|P53598|SUCA_YEAST Succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=LSC1 PE=1 SV=1
Length = 329
Score = 132 bits (333), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 77/105 (73%), Gaps = 1/105 (0%)
Query: 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAK 112
+ + K+T+VI QG TGK GTFH + EYGT VVGG PKK G HLG PVF SV +A
Sbjct: 31 LLLPKDTKVIFQGFTGKQGTFHASISQEYGTN-VVGGTNPKKAGQTHLGQPVFASVKDAI 89
Query: 113 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
ET A AS I+VPPP AAAAI E++EAE+ L VCITEGIPQHDM+
Sbjct: 90 KETGATASAIFVPPPIAAAAIKESIEAEIPLAVCITEGIPQHDML 134
>sp|Q8CPH4|SUCD_STAES Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=sucD PE=3 SV=1
Length = 302
Score = 132 bits (333), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 83/106 (78%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
+VF+DKNT+V+ QGITG FHT+Q ++YGT+ +V GVTP KGG G+PV+N+V EA
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQ-IVAGVTPGKGGQVVEGVPVYNTVEEA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
K ET AN SV+YVP PFAA +I+EA +A+LD+V+CITE IP DMV
Sbjct: 61 KNETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMV 106
>sp|O28733|SUCD1_ARCFU Succinyl-CoA ligase [ADP-forming] subunit alpha 1 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=sucD1 PE=3 SV=1
Length = 291
Score = 130 bits (326), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 82/107 (76%), Gaps = 1/107 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
A+ VD+NTRVI QGITG G+F ++ ++YGTK VVGGVTP KGG+E G+PV+N+V EA
Sbjct: 5 AILVDENTRVIVQGITGFQGSFQAKRMLDYGTK-VVGGVTPGKGGSEVHGIPVYNTVEEA 63
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVI 158
AET A+ S+IYVP FA AI EA +A L LVVC+TEGIP +D ++
Sbjct: 64 VAETNADTSIIYVPARFATDAIFEAFDAGLRLVVCVTEGIPLYDEML 110
>sp|O13750|SUCA_SCHPO Probable succinyl-CoA ligase [ADP-forming] subunit alpha,
mitochondrial OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC16E8.17c PE=3 SV=1
Length = 331
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/133 (54%), Positives = 92/133 (69%), Gaps = 5/133 (3%)
Query: 25 SHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTK 84
S R SSS+ +N S + P + ++ +T+VI QG TGK GTFH + A++YGTK
Sbjct: 11 SLRRFSSSS----QLKNSKSLYEQTIPNLMINSDTKVIFQGFTGKQGTFHAQHAMDYGTK 66
Query: 85 MVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLV 144
VVGG PKK GT HLG PVF ++ EA ETKA+AS ++VPPP AA AI EA+ AE+ L+
Sbjct: 67 -VVGGTNPKKAGTTHLGKPVFGTIEEAMKETKADASAVFVPPPLAAGAIEEAIAAEVPLI 125
Query: 145 VCITEGIPQHDMV 157
V ITEGIPQHDM+
Sbjct: 126 VAITEGIPQHDML 138
>sp|Q58643|SUCD_METJA Succinyl-CoA ligase [ADP-forming] subunit alpha
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=sucD PE=1
SV=1
Length = 294
Score = 122 bits (307), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 79/103 (76%), Gaps = 1/103 (0%)
Query: 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAK 112
+ +D+NT+ I QGITG+ G+FHT++ +E GTK +VGGVTP KGG G+PVF++V EA
Sbjct: 8 ILLDENTKAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGGQNVHGVPVFDTVKEAV 66
Query: 113 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHD 155
ET ANASVI+VP PFA A+ EA++A ++L+V ITE IP HD
Sbjct: 67 KETDANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHD 109
>sp|P53595|MTKB_METEA Malate--CoA ligase subunit alpha OS=Methylobacterium extorquens
(strain ATCC 14718 / DSM 1338 / AM1) GN=mtkB PE=3 SV=2
Length = 296
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEA 111
++ +D+ T ++ QGITG GTFH ++ I YG+ VVGGVTP KGG H G+PVFN+V EA
Sbjct: 2 SILIDEKTPILVQGITGDKGTFHAKEMIAYGSN-VVGGVTPGKGGKTHCGVPVFNTVKEA 60
Query: 112 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
T A S+ +V PPFAA AIMEA +A L LV IT+GIP DM+
Sbjct: 61 VEATGATTSITFVAPPFAADAIMEAADAGLKLVCSITDGIPAQDMM 106
>sp|O26663|SUCD_METTH Succinyl-CoA ligase [ADP-forming] subunit alpha
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=sucD PE=3 SV=1
Length = 293
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 74/103 (71%), Gaps = 2/103 (1%)
Query: 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAK 112
+ +D++TR + QGITGK G+FHT Q +EYGT+ +V GVTP KGG E LG+ V+NSV E
Sbjct: 7 ILLDEDTRCLVQGITGKQGSFHTRQMLEYGTR-IVAGVTPGKGGQEFLGVDVYNSVEEVT 65
Query: 113 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHD 155
E NAS+I+VP PFA A E+++ LDLVV ITE IP HD
Sbjct: 66 EEMDVNASIIFVPAPFAKDAAFESIK-HLDLVVIITEHIPVHD 107
>sp|P09143|SUCD_THETH Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Thermus
thermophilus GN=sucD PE=1 SV=1
Length = 288
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 79/105 (75%), Gaps = 1/105 (0%)
Query: 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAK 112
+ V++ TRV+ QGITG+ G FHT+Q ++YGTK +V GVTP KGGTE LG+PV+++V EA
Sbjct: 2 ILVNRETRVLVQGITGREGQFHTKQMLDYGTK-IVAGVTPGKGGTEVLGVPVYDTVKEAV 60
Query: 113 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
A + +AS+I+VP P AA A +EA A + L+V ITEGIP DMV
Sbjct: 61 AHHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMV 105
>sp|P71558|SUCD_MYCTU Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Mycobacterium
tuberculosis GN=sucD PE=3 SV=1
Length = 303
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 77/116 (66%), Gaps = 10/116 (8%)
Query: 49 SHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT----EHLG--- 101
+H ++F+ ++ +VI QGITG T HT + + GT+ +VGGV +K GT E G
Sbjct: 2 THMSIFLSRDNKVIVQGITGSEATVHTARMLRAGTQ-IVGGVNARKAGTTVTHEDKGGRL 60
Query: 102 --LPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHD 155
LPVF SVAEA +T A+ S+I+VPP FA AI+EA++AE+ L+V ITEGIP D
Sbjct: 61 IKLPVFGSVAEAMEKTGADVSIIFVPPTFAKDAIIEAIDAEIPLLVVITEGIPVQD 116
>sp|Q7U0Z0|SUCD_MYCBO Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=sucD PE=3
SV=1
Length = 303
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 77/116 (66%), Gaps = 10/116 (8%)
Query: 49 SHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT----EHLG--- 101
+H ++F+ ++ +VI QGITG T HT + + GT+ +VGGV +K GT E G
Sbjct: 2 THMSIFLSRDNKVIVQGITGSEATVHTARMLRAGTQ-IVGGVNARKAGTTVTHEDKGGRL 60
Query: 102 --LPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHD 155
LPVF SVAEA +T A+ S+I+VPP FA AI+EA++AE+ L+V ITEGIP D
Sbjct: 61 IKLPVFGSVAEAMEKTGADVSIIFVPPTFAKDAIIEAIDAEIPLLVVITEGIPVQD 116
>sp|P53399|SUCA1_TRIVA Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial
OS=Trichomonas vaginalis GN=ALPHA-SCS1 PE=3 SV=1
Length = 309
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 76/107 (71%), Gaps = 2/107 (1%)
Query: 51 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAE 110
P +F+DK+T+V+ QGI G G FH+ +YGTK VVG V PKK GT GLP+F ++ E
Sbjct: 13 PLLFIDKDTKVVIQGI-GNQGQFHSRLMRQYGTK-VVGAVHPKKAGTIIAGLPIFKNMKE 70
Query: 111 AKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
T ANAS+I+VP P AAAA +EA EA + LVVCITE IPQHDM+
Sbjct: 71 VVKRTDANASLIFVPAPGAAAACIEAAEAGMGLVVCITEHIPQHDMI 117
>sp|P53400|SUCA2_TRIVA Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial
OS=Trichomonas vaginalis GN=ALPHA-SCS2 PE=3 SV=1
Length = 309
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 75/108 (69%), Gaps = 2/108 (1%)
Query: 50 HPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVA 109
P +F+DK+TRV+ QGI G G +H+ EYGTK VVG V PKK G GLP+F ++
Sbjct: 12 QPLLFIDKDTRVVIQGI-GNQGQYHSRLMREYGTK-VVGAVHPKKAGKIIAGLPIFKNMK 69
Query: 110 EAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
E T ANAS+I+VP P AAAA +EA EA + LVVCITE IPQHDM+
Sbjct: 70 EVVKRTDANASLIFVPAPGAAAACIEAAEAGMGLVVCITEHIPQHDMI 117
>sp|P53401|SUCA3_TRIVA Succinyl-CoA ligase [GDP-forming] subunit alpha-3, mitochondrial
OS=Trichomonas vaginalis GN=ALPHA-SCS3 PE=3 SV=1
Length = 309
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 76/108 (70%), Gaps = 2/108 (1%)
Query: 50 HPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVA 109
P +F+DK+T+V+ QGI G G FH+ +YGTK VVG V PKK G+ GLP+F ++
Sbjct: 12 QPLLFIDKDTKVVIQGI-GNQGQFHSRLMRQYGTK-VVGAVHPKKAGSIIAGLPIFKNMK 69
Query: 110 EAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
E T ANAS+I+VP P AAAA +EA +A + LVVCITE IPQHDM+
Sbjct: 70 EVVKRTDANASLIFVPAPGAAAACIEAAQAGMGLVVCITEHIPQHDMI 117
>sp|P34101|FHKC_DICDI Probable serine/threonine-protein kinase fhkC OS=Dictyostelium
discoideum GN=fhkC PE=3 SV=2
Length = 595
Score = 32.3 bits (72), Expect = 1.9, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 14/80 (17%)
Query: 21 ASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIE 80
+ V +Y +S H + Y S FVD T NGTF + I
Sbjct: 121 SKGVCNYTFTSPTVSGKHCKIYRDPTVKSRNVAFVDD---------TSTNGTFINNEVIG 171
Query: 81 YGTKMVVG-----GVTPKKG 95
G+K+++ V PKKG
Sbjct: 172 KGSKILIENGCEISVIPKKG 191
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,449,186
Number of Sequences: 539616
Number of extensions: 2382739
Number of successful extensions: 7018
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 6910
Number of HSP's gapped (non-prelim): 75
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)