Query 030169
Match_columns 182
No_of_seqs 112 out of 944
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 09:36:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1255 Succinyl-CoA synthetas 100.0 1E-31 2.3E-36 231.6 10.3 129 34-163 14-142 (329)
2 PTZ00187 succinyl-CoA syntheta 100.0 2.3E-30 4.9E-35 229.2 13.2 118 46-164 17-136 (317)
3 COG0074 SucD Succinyl-CoA synt 100.0 4.5E-29 9.8E-34 217.7 12.3 115 51-166 1-115 (293)
4 PLN00125 Succinyl-CoA ligase [ 99.9 1.1E-23 2.3E-28 185.4 12.5 115 50-165 4-119 (300)
5 TIGR01019 sucCoAalpha succinyl 99.9 5.5E-22 1.2E-26 173.5 12.4 114 53-167 1-114 (286)
6 PF01113 DapB_N: Dihydrodipico 99.8 1.8E-21 4E-26 149.8 7.5 111 59-173 1-124 (124)
7 PRK05678 succinyl-CoA syntheta 99.8 2.2E-20 4.8E-25 163.8 13.0 115 51-166 1-115 (291)
8 PF02629 CoA_binding: CoA bind 99.8 1.5E-18 3.2E-23 128.2 10.4 94 56-150 1-96 (96)
9 COG0289 DapB Dihydrodipicolina 99.8 3.2E-18 6.9E-23 148.7 10.3 112 58-173 2-126 (266)
10 PLN02775 Probable dihydrodipic 99.7 2.9E-17 6.4E-22 144.1 10.8 113 58-173 11-136 (286)
11 TIGR02130 dapB_plant dihydrodi 99.7 1.8E-16 4E-21 138.5 10.1 110 60-173 2-125 (275)
12 TIGR00036 dapB dihydrodipicoli 99.7 3.2E-16 6.9E-21 134.8 10.6 111 59-173 2-127 (266)
13 PRK00048 dihydrodipicolinate r 99.6 1.7E-15 3.7E-20 129.4 10.9 108 59-170 2-113 (257)
14 TIGR02717 AcCoA-syn-alpha acet 99.6 3.9E-15 8.4E-20 136.4 10.9 107 53-166 3-120 (447)
15 PLN02522 ATP citrate (pro-S)-l 99.6 9.3E-15 2E-19 139.2 12.0 109 53-166 5-129 (608)
16 COG1832 Predicted CoA-binding 99.5 6.4E-14 1.4E-18 111.8 8.6 107 54-165 12-121 (140)
17 PF13380 CoA_binding_2: CoA bi 99.5 1.2E-13 2.6E-18 105.7 8.6 98 60-167 2-102 (116)
18 COG2344 AT-rich DNA-binding pr 99.5 7.3E-14 1.6E-18 117.1 6.5 108 53-162 79-199 (211)
19 PF01408 GFO_IDH_MocA: Oxidore 99.1 1.5E-10 3.3E-15 85.9 6.3 106 59-166 1-112 (120)
20 COG1042 Acyl-CoA synthetase (N 99.0 1.6E-09 3.4E-14 103.6 8.2 97 53-156 6-106 (598)
21 PRK13303 L-aspartate dehydroge 98.9 6.2E-09 1.3E-13 89.6 8.7 104 59-167 2-113 (265)
22 PRK05472 redox-sensing transcr 98.8 9.7E-09 2.1E-13 85.3 6.9 107 54-162 80-199 (213)
23 PRK13304 L-aspartate dehydroge 98.7 3.6E-08 7.8E-13 84.7 8.2 103 59-166 2-112 (265)
24 PRK11579 putative oxidoreducta 98.7 3.9E-08 8.4E-13 86.5 8.4 107 57-165 3-113 (346)
25 COG0673 MviM Predicted dehydro 98.6 7.3E-08 1.6E-12 82.8 6.1 109 57-166 2-117 (342)
26 PRK13302 putative L-aspartate 98.5 2.3E-07 5.1E-12 80.2 7.7 102 58-165 6-114 (271)
27 PRK10206 putative oxidoreducta 98.5 4.3E-07 9.2E-12 80.5 8.8 106 59-166 2-114 (344)
28 PRK04207 glyceraldehyde-3-phos 98.4 7.1E-07 1.5E-11 79.7 7.1 84 59-146 2-108 (341)
29 TIGR01921 DAP-DH diaminopimela 98.4 8.9E-07 1.9E-11 79.4 7.0 109 58-170 3-116 (324)
30 PRK06270 homoserine dehydrogen 98.4 1E-06 2.2E-11 78.4 7.0 107 59-168 3-145 (341)
31 TIGR01761 thiaz-red thiazoliny 98.3 2.4E-06 5.1E-11 76.9 7.4 102 57-165 2-113 (343)
32 PRK08374 homoserine dehydrogen 98.2 2.9E-06 6.4E-11 75.7 7.4 104 59-165 3-139 (336)
33 PRK06091 membrane protein FdrA 98.1 7.5E-06 1.6E-10 78.0 8.3 65 101-166 101-166 (555)
34 PRK06349 homoserine dehydrogen 98.1 1.3E-05 2.7E-10 73.6 8.0 108 58-168 3-124 (426)
35 PF03447 NAD_binding_3: Homose 98.0 2E-06 4.4E-11 64.5 1.2 99 65-167 1-111 (117)
36 PLN02819 lysine-ketoglutarate 98.0 2.1E-05 4.6E-10 79.7 8.7 113 56-172 567-701 (1042)
37 PTZ00431 pyrroline carboxylate 98.0 5.7E-05 1.2E-09 64.5 9.9 96 58-161 3-103 (260)
38 PF03446 NAD_binding_2: NAD bi 98.0 9.6E-06 2.1E-10 64.5 4.4 102 59-165 2-110 (163)
39 TIGR00465 ilvC ketol-acid redu 98.0 2.2E-05 4.7E-10 69.8 6.9 97 58-159 3-104 (314)
40 PRK11880 pyrroline-5-carboxyla 97.9 2.9E-05 6.4E-10 65.5 7.4 97 59-160 3-106 (267)
41 PRK12491 pyrroline-5-carboxyla 97.9 2.5E-05 5.4E-10 67.6 7.1 98 59-161 3-110 (272)
42 PLN02688 pyrroline-5-carboxyla 97.9 3.2E-05 7E-10 65.2 7.6 98 59-161 1-108 (266)
43 PRK07634 pyrroline-5-carboxyla 97.9 5.5E-05 1.2E-09 62.8 8.6 99 57-160 3-111 (245)
44 PF01118 Semialdhyde_dh: Semia 97.9 1.8E-05 3.9E-10 60.1 5.1 92 60-155 1-104 (121)
45 PRK06928 pyrroline-5-carboxyla 97.9 6.5E-05 1.4E-09 64.8 8.9 96 59-160 2-110 (277)
46 PRK07679 pyrroline-5-carboxyla 97.9 8.9E-05 1.9E-09 63.6 9.3 98 58-160 3-111 (279)
47 PRK05479 ketol-acid reductoiso 97.9 4.8E-05 1E-09 68.4 7.9 95 58-157 17-116 (330)
48 PF07991 IlvN: Acetohydroxy ac 97.9 1.3E-05 2.8E-10 66.0 3.8 93 57-154 3-100 (165)
49 PRK08300 acetaldehyde dehydrog 97.9 3E-05 6.6E-10 69.0 6.2 87 58-146 4-100 (302)
50 PRK00436 argC N-acetyl-gamma-g 97.9 3.3E-05 7.2E-10 68.9 6.4 94 59-155 3-106 (343)
51 PRK13403 ketol-acid reductoiso 97.8 4E-05 8.7E-10 69.2 6.9 95 57-156 15-113 (335)
52 TIGR03215 ac_ald_DH_ac acetald 97.8 3.9E-05 8.5E-10 67.6 6.4 86 59-146 2-94 (285)
53 PRK07680 late competence prote 97.8 0.00011 2.4E-09 62.7 8.6 97 59-160 1-108 (273)
54 PF03807 F420_oxidored: NADP o 97.8 3.6E-05 7.9E-10 55.2 4.2 73 60-136 1-81 (96)
55 PRK13301 putative L-aspartate 97.7 0.00019 4.1E-09 63.1 8.7 104 59-165 3-112 (267)
56 PRK12490 6-phosphogluconate de 97.7 9.7E-05 2.1E-09 64.2 6.9 103 59-165 1-110 (299)
57 PRK09599 6-phosphogluconate de 97.7 0.00011 2.5E-09 63.7 7.3 104 59-166 1-111 (301)
58 PRK14619 NAD(P)H-dependent gly 97.7 0.00017 3.6E-09 62.9 8.2 87 58-159 4-93 (308)
59 PRK14618 NAD(P)H-dependent gly 97.7 9E-05 2E-09 64.8 6.5 99 58-163 4-121 (328)
60 PRK06476 pyrroline-5-carboxyla 97.7 0.00015 3.2E-09 61.4 7.4 100 59-162 1-107 (258)
61 KOG2741 Dimeric dihydrodiol de 97.6 0.00027 6E-09 64.1 8.1 110 57-168 5-124 (351)
62 PRK11559 garR tartronate semia 97.6 0.00027 5.9E-09 60.6 7.8 102 59-165 3-112 (296)
63 PF13460 NAD_binding_10: NADH( 97.6 0.00015 3.2E-09 56.8 5.7 85 61-148 1-97 (183)
64 TIGR00872 gnd_rel 6-phosphoglu 97.6 0.0002 4.3E-09 62.3 6.9 101 59-163 1-108 (298)
65 COG1712 Predicted dinucleotide 97.5 0.00045 9.7E-09 60.1 8.2 103 59-165 1-110 (255)
66 PLN02256 arogenate dehydrogena 97.5 0.00016 3.4E-09 63.9 5.5 76 57-136 35-112 (304)
67 COG0345 ProC Pyrroline-5-carbo 97.5 0.00039 8.5E-09 60.9 7.7 98 59-161 2-108 (266)
68 TIGR01850 argC N-acetyl-gamma- 97.5 0.00028 6.2E-09 63.1 6.6 94 59-156 1-107 (346)
69 COG0059 IlvC Ketol-acid reduct 97.4 0.00037 8.1E-09 62.8 6.9 94 57-155 17-115 (338)
70 PRK06392 homoserine dehydrogen 97.4 0.00037 7.9E-09 62.4 6.7 105 59-167 1-135 (326)
71 PRK08605 D-lactate dehydrogena 97.4 0.00031 6.8E-09 62.4 6.2 100 58-163 146-251 (332)
72 TIGR03570 NeuD_NnaD sugar O-ac 97.4 0.0012 2.6E-08 52.2 8.8 83 60-144 1-87 (201)
73 COG0240 GpsA Glycerol-3-phosph 97.4 0.00019 4.1E-09 64.8 4.5 102 59-166 2-123 (329)
74 PF03435 Saccharop_dh: Sacchar 97.4 0.00015 3.2E-09 64.6 3.8 101 61-167 1-115 (386)
75 TIGR03855 NAD_NadX aspartate d 97.4 0.00073 1.6E-08 57.7 7.8 80 83-165 2-87 (229)
76 TIGR01505 tartro_sem_red 2-hyd 97.4 0.00062 1.4E-08 58.4 7.4 100 60-165 1-109 (291)
77 PRK15059 tartronate semialdehy 97.4 0.00064 1.4E-08 59.3 7.4 105 59-166 1-110 (292)
78 TIGR01915 npdG NADPH-dependent 97.4 0.0012 2.7E-08 54.8 8.8 92 59-153 1-106 (219)
79 PRK08664 aspartate-semialdehyd 97.4 0.00047 1E-08 61.6 6.6 88 59-151 4-110 (349)
80 TIGR00978 asd_EA aspartate-sem 97.4 0.00042 9.2E-09 61.6 6.2 87 59-149 1-105 (341)
81 PRK00094 gpsA NAD(P)H-dependen 97.4 0.00027 5.9E-09 60.7 4.8 98 59-161 2-118 (325)
82 PRK07417 arogenate dehydrogena 97.3 0.00059 1.3E-08 58.7 6.8 99 59-162 1-104 (279)
83 TIGR01692 HIBADH 3-hydroxyisob 97.3 0.00053 1.1E-08 59.1 6.4 100 63-167 1-108 (288)
84 PRK11199 tyrA bifunctional cho 97.3 0.0021 4.6E-08 58.0 10.3 91 58-162 98-188 (374)
85 TIGR03649 ergot_EASG ergot alk 97.3 0.0013 2.9E-08 55.2 8.3 88 60-148 1-104 (285)
86 PLN02968 Probable N-acetyl-gam 97.3 0.001 2.2E-08 60.7 7.9 95 57-156 37-142 (381)
87 PRK05671 aspartate-semialdehyd 97.3 0.0011 2.5E-08 59.4 8.0 83 58-144 4-94 (336)
88 PRK14874 aspartate-semialdehyd 97.2 0.0011 2.3E-08 59.0 7.6 81 59-142 2-89 (334)
89 PF01210 NAD_Gly3P_dh_N: NAD-d 97.2 0.0011 2.3E-08 52.6 6.8 87 60-151 1-106 (157)
90 PF05368 NmrA: NmrA-like famil 97.2 0.0011 2.4E-08 54.3 6.9 83 61-146 1-100 (233)
91 PRK06130 3-hydroxybutyryl-CoA 97.2 0.0012 2.5E-08 57.2 7.3 99 56-159 2-126 (311)
92 PRK08655 prephenate dehydrogen 97.2 0.0015 3.2E-08 60.3 8.3 101 59-163 1-106 (437)
93 PF10727 Rossmann-like: Rossma 97.2 0.00059 1.3E-08 53.6 4.9 98 56-158 8-113 (127)
94 PRK07574 formate dehydrogenase 97.2 0.0021 4.6E-08 58.9 9.1 106 58-169 192-304 (385)
95 COG1748 LYS9 Saccharopine dehy 97.2 0.003 6.4E-08 58.2 9.8 106 59-170 2-119 (389)
96 TIGR03026 NDP-sugDHase nucleot 97.2 0.0016 3.4E-08 59.1 7.9 97 59-160 1-131 (411)
97 PLN03139 formate dehydrogenase 97.2 0.0021 4.7E-08 58.9 8.7 105 58-168 199-310 (386)
98 PLN02383 aspartate semialdehyd 97.1 0.0018 3.8E-08 58.3 8.0 86 56-144 5-97 (344)
99 PRK15461 NADH-dependent gamma- 97.1 0.0015 3.2E-08 56.8 7.1 101 59-165 2-111 (296)
100 PRK12480 D-lactate dehydrogena 97.1 0.0024 5.2E-08 57.0 8.3 101 58-165 146-250 (330)
101 PTZ00142 6-phosphogluconate de 97.0 0.0031 6.6E-08 59.1 8.7 102 59-164 2-117 (470)
102 PRK06436 glycerate dehydrogena 97.0 0.0033 7.1E-08 55.7 8.4 100 58-166 122-226 (303)
103 PF04321 RmlD_sub_bind: RmlD s 97.0 0.00066 1.4E-08 58.5 3.9 83 59-148 1-101 (286)
104 PLN02712 arogenate dehydrogena 97.0 0.0016 3.6E-08 63.3 6.9 78 57-138 368-447 (667)
105 PRK14620 NAD(P)H-dependent gly 97.0 0.0029 6.2E-08 55.2 7.8 91 59-153 1-111 (326)
106 TIGR03023 WcaJ_sugtrans Undeca 97.0 0.0035 7.6E-08 57.2 8.5 86 58-146 128-224 (451)
107 PRK08040 putative semialdehyde 97.0 0.0024 5.1E-08 57.6 7.2 85 57-145 3-95 (336)
108 PF02826 2-Hacid_dh_C: D-isome 97.0 0.00038 8.1E-09 56.3 1.7 102 58-167 36-145 (178)
109 PRK12439 NAD(P)H-dependent gly 96.9 0.0018 3.9E-08 57.5 6.1 95 56-154 5-117 (341)
110 PLN02545 3-hydroxybutyryl-CoA 96.9 0.0019 4E-08 55.7 5.9 98 59-161 5-132 (295)
111 TIGR03025 EPS_sugtrans exopoly 96.9 0.004 8.6E-08 56.8 8.3 87 58-146 125-221 (445)
112 PRK06728 aspartate-semialdehyd 96.9 0.0031 6.7E-08 57.2 7.4 85 57-144 4-96 (347)
113 PTZ00345 glycerol-3-phosphate 96.9 0.0033 7.1E-08 57.2 7.5 102 57-163 10-146 (365)
114 TIGR00715 precor6x_red precorr 96.9 0.0042 9E-08 53.9 7.8 86 59-146 1-98 (256)
115 PRK06545 prephenate dehydrogen 96.9 0.0038 8.2E-08 55.8 7.7 100 60-162 2-108 (359)
116 TIGR01296 asd_B aspartate-semi 96.9 0.0024 5.1E-08 57.2 6.3 81 60-143 1-88 (339)
117 PRK05225 ketol-acid reductoiso 96.9 0.0017 3.7E-08 61.2 5.6 93 57-155 35-137 (487)
118 CHL00194 ycf39 Ycf39; Provisio 96.9 0.0073 1.6E-07 52.1 9.0 88 59-149 1-110 (317)
119 PRK07502 cyclohexadienyl dehyd 96.9 0.0033 7.2E-08 54.5 6.9 99 59-162 7-113 (307)
120 TIGR03022 WbaP_sugtrans Undeca 96.8 0.005 1.1E-07 56.3 8.2 86 58-145 125-221 (456)
121 PRK08507 prephenate dehydrogen 96.8 0.0036 7.8E-08 53.5 6.8 93 59-158 1-99 (275)
122 PRK15204 undecaprenyl-phosphat 96.8 0.0061 1.3E-07 56.9 8.8 85 59-146 147-240 (476)
123 PRK07531 bifunctional 3-hydrox 96.8 0.0033 7.1E-08 58.7 6.9 95 59-158 5-126 (495)
124 PLN02712 arogenate dehydrogena 96.8 0.0073 1.6E-07 58.8 9.5 77 57-137 51-129 (667)
125 PRK06444 prephenate dehydrogen 96.8 0.0027 5.9E-08 53.1 5.7 51 59-136 1-51 (197)
126 PRK13243 glyoxylate reductase; 96.8 0.0051 1.1E-07 54.8 7.7 105 58-169 150-260 (333)
127 PRK08818 prephenate dehydrogen 96.8 0.013 2.9E-07 53.4 10.6 70 58-139 4-74 (370)
128 TIGR01532 E4PD_g-proteo D-eryt 96.8 0.0043 9.3E-08 55.7 6.9 85 60-146 1-119 (325)
129 PRK15469 ghrA bifunctional gly 96.7 0.011 2.3E-07 52.5 9.3 99 58-165 136-242 (312)
130 PLN00016 RNA-binding protein; 96.7 0.01 2.2E-07 52.6 9.2 88 59-148 53-164 (378)
131 PRK08410 2-hydroxyacid dehydro 96.7 0.007 1.5E-07 53.5 8.0 100 58-165 145-248 (311)
132 TIGR03376 glycerol3P_DH glycer 96.7 0.0068 1.5E-07 54.6 8.0 101 60-164 1-134 (342)
133 TIGR01546 GAPDH-II_archae glyc 96.7 0.0035 7.6E-08 56.6 6.0 85 61-149 1-108 (333)
134 PLN02695 GDP-D-mannose-3',5'-e 96.7 0.009 1.9E-07 53.2 8.5 93 53-149 16-137 (370)
135 PRK15438 erythronate-4-phospha 96.7 0.0049 1.1E-07 56.4 6.9 99 58-164 116-222 (378)
136 TIGR01327 PGDH D-3-phosphoglyc 96.7 0.0042 9.2E-08 58.6 6.7 105 59-169 139-249 (525)
137 PLN02657 3,8-divinyl protochlo 96.7 0.016 3.4E-07 52.3 10.1 91 56-148 58-181 (390)
138 PRK00257 erythronate-4-phospha 96.7 0.0047 1E-07 56.5 6.7 98 58-162 116-221 (381)
139 TIGR00873 gnd 6-phosphoglucona 96.7 0.0043 9.3E-08 58.0 6.6 102 60-164 1-114 (467)
140 PRK08955 glyceraldehyde-3-phos 96.7 0.0026 5.7E-08 57.3 5.0 85 59-146 3-118 (334)
141 PRK12921 2-dehydropantoate 2-r 96.7 0.013 2.8E-07 49.9 8.9 92 59-155 1-109 (305)
142 PLN02350 phosphogluconate dehy 96.6 0.0042 9E-08 58.7 6.3 107 59-168 7-126 (493)
143 COG0002 ArgC Acetylglutamate s 96.6 0.0086 1.9E-07 54.6 8.0 100 58-160 2-113 (349)
144 PRK06522 2-dehydropantoate 2-r 96.6 0.014 3E-07 49.6 8.8 91 59-155 1-107 (304)
145 COG2084 MmsB 3-hydroxyisobutyr 96.6 0.011 2.5E-07 52.3 8.4 106 59-167 1-113 (286)
146 PRK05808 3-hydroxybutyryl-CoA 96.5 0.0075 1.6E-07 51.7 6.4 95 59-160 4-130 (282)
147 smart00846 Gp_dh_N Glyceraldeh 96.5 0.0095 2.1E-07 47.7 6.6 86 59-146 1-117 (149)
148 TIGR01214 rmlD dTDP-4-dehydror 96.4 0.011 2.3E-07 49.4 7.0 80 60-146 1-98 (287)
149 PRK11790 D-3-phosphoglycerate 96.4 0.015 3.2E-07 53.5 8.3 104 58-168 151-258 (409)
150 PRK09260 3-hydroxybutyryl-CoA 96.4 0.0055 1.2E-07 52.7 5.3 96 59-160 2-129 (288)
151 KOG1203 Predicted dehydrogenas 96.4 0.0064 1.4E-07 56.5 5.9 40 54-94 75-114 (411)
152 COG1091 RfbD dTDP-4-dehydrorha 96.4 0.01 2.2E-07 52.5 6.9 82 59-148 1-100 (281)
153 PRK13581 D-3-phosphoglycerate 96.4 0.0082 1.8E-07 56.7 6.7 104 58-168 140-249 (526)
154 PRK14806 bifunctional cyclohex 96.4 0.016 3.5E-07 56.0 8.8 100 59-163 4-111 (735)
155 PRK11863 N-acetyl-gamma-glutam 96.4 0.012 2.5E-07 52.7 7.3 76 58-144 2-78 (313)
156 PRK09987 dTDP-4-dehydrorhamnos 96.4 0.012 2.5E-07 50.6 7.0 84 59-146 1-102 (299)
157 PRK06932 glycerate dehydrogena 96.4 0.012 2.7E-07 52.0 7.3 102 58-168 147-252 (314)
158 PRK08293 3-hydroxybutyryl-CoA 96.4 0.008 1.7E-07 51.8 5.8 96 59-159 4-131 (287)
159 PRK10124 putative UDP-glucose 96.3 0.019 4.1E-07 53.3 8.6 85 58-146 143-236 (463)
160 COG1086 Predicted nucleoside-d 96.3 0.017 3.8E-07 55.7 8.4 88 56-145 114-209 (588)
161 PRK06598 aspartate-semialdehyd 96.3 0.013 2.9E-07 53.6 7.2 80 59-142 2-91 (369)
162 PRK11064 wecC UDP-N-acetyl-D-m 96.3 0.015 3.3E-07 53.2 7.6 100 59-161 4-131 (415)
163 PRK06035 3-hydroxyacyl-CoA deh 96.3 0.012 2.6E-07 50.7 6.4 96 59-160 4-133 (291)
164 PLN02928 oxidoreductase family 96.2 0.015 3.3E-07 52.2 7.1 104 58-168 159-281 (347)
165 PRK08229 2-dehydropantoate 2-r 96.2 0.0098 2.1E-07 51.8 5.6 90 59-154 3-113 (341)
166 TIGR01851 argC_other N-acetyl- 96.2 0.018 3.9E-07 51.6 7.3 75 59-144 2-77 (310)
167 TIGR03013 EpsB_2 sugar transfe 96.2 0.018 4E-07 52.8 7.5 87 58-146 124-219 (442)
168 COG0111 SerA Phosphoglycerate 96.2 0.0084 1.8E-07 53.7 5.1 101 59-166 143-250 (324)
169 PLN03209 translocon at the inn 96.1 0.023 4.9E-07 54.9 8.2 95 52-149 74-208 (576)
170 TIGR01179 galE UDP-glucose-4-e 96.1 0.041 8.9E-07 46.0 8.7 87 60-148 1-120 (328)
171 cd05211 NAD_bind_Glu_Leu_Phe_V 96.1 0.016 3.6E-07 48.9 6.2 87 58-150 23-128 (217)
172 PRK07530 3-hydroxybutyryl-CoA 96.1 0.018 4E-07 49.5 6.6 95 58-158 4-129 (292)
173 PLN02166 dTDP-glucose 4,6-dehy 96.1 0.022 4.8E-07 52.4 7.5 93 50-146 112-232 (436)
174 PRK06813 homoserine dehydrogen 96.0 0.028 6.1E-07 50.9 8.0 107 59-168 3-142 (346)
175 PLN00141 Tic62-NAD(P)-related 96.0 0.055 1.2E-06 44.9 9.1 91 58-149 17-132 (251)
176 COG0057 GapA Glyceraldehyde-3- 96.0 0.015 3.3E-07 52.7 6.0 90 59-150 2-124 (335)
177 cd01492 Aos1_SUMO Ubiquitin ac 96.0 0.044 9.4E-07 45.4 8.3 35 58-95 21-56 (197)
178 COG2910 Putative NADH-flavin r 95.9 0.048 1E-06 46.5 8.2 103 59-164 1-136 (211)
179 PF13727 CoA_binding_3: CoA-bi 95.9 0.023 5E-07 43.7 5.9 86 58-145 77-173 (175)
180 PRK10675 UDP-galactose-4-epime 95.9 0.055 1.2E-06 46.3 8.8 89 59-149 1-124 (338)
181 TIGR03466 HpnA hopanoid-associ 95.8 0.064 1.4E-06 45.1 8.8 87 59-149 1-113 (328)
182 PLN02858 fructose-bisphosphate 95.8 0.027 5.8E-07 59.1 7.6 102 58-165 324-434 (1378)
183 PRK06487 glycerate dehydrogena 95.8 0.035 7.6E-07 49.2 7.4 100 58-167 148-251 (317)
184 PRK15409 bifunctional glyoxyla 95.8 0.042 9E-07 49.0 7.7 105 58-169 145-256 (323)
185 PLN02858 fructose-bisphosphate 95.7 0.032 7E-07 58.5 7.9 103 58-165 4-114 (1378)
186 PLN02240 UDP-glucose 4-epimera 95.7 0.089 1.9E-06 45.3 9.4 90 58-149 5-132 (352)
187 PRK15181 Vi polysaccharide bio 95.7 0.066 1.4E-06 46.9 8.6 39 52-92 9-47 (348)
188 TIGR00936 ahcY adenosylhomocys 95.7 0.036 7.7E-07 51.3 7.1 102 57-164 194-298 (406)
189 PRK05476 S-adenosyl-L-homocyst 95.7 0.035 7.6E-07 51.7 7.0 101 57-163 211-314 (425)
190 cd01485 E1-1_like Ubiquitin ac 95.7 0.062 1.3E-06 44.5 7.9 89 58-151 19-149 (198)
191 PRK12557 H(2)-dependent methyl 95.6 0.071 1.5E-06 48.0 8.6 87 71-162 32-130 (342)
192 PRK06249 2-dehydropantoate 2-r 95.6 0.074 1.6E-06 46.3 8.4 96 58-157 5-115 (313)
193 cd05213 NAD_bind_Glutamyl_tRNA 95.6 0.015 3.3E-07 51.1 4.1 103 57-164 177-301 (311)
194 PRK07066 3-hydroxybutyryl-CoA 95.5 0.051 1.1E-06 48.7 7.3 96 58-158 7-129 (321)
195 PRK08223 hypothetical protein; 95.5 0.08 1.7E-06 47.0 8.5 84 58-146 27-150 (287)
196 smart00859 Semialdhyde_dh Semi 95.5 0.018 3.9E-07 43.2 3.8 84 60-144 1-96 (122)
197 PRK06182 short chain dehydroge 95.5 0.16 3.4E-06 42.3 9.8 79 58-151 3-84 (273)
198 TIGR01777 yfcH conserved hypot 95.5 0.047 1E-06 45.2 6.6 84 61-148 1-110 (292)
199 PRK12829 short chain dehydroge 95.4 0.12 2.7E-06 42.1 8.8 86 56-152 9-97 (264)
200 PF00899 ThiF: ThiF family; I 95.4 0.035 7.6E-07 42.5 5.2 89 58-150 2-102 (135)
201 PF03721 UDPG_MGDP_dh_N: UDP-g 95.4 0.088 1.9E-06 43.2 7.9 94 59-157 1-128 (185)
202 PRK13535 erythrose 4-phosphate 95.4 0.032 7E-07 50.4 5.7 86 59-146 2-121 (336)
203 PLN02725 GDP-4-keto-6-deoxyman 95.4 0.084 1.8E-06 44.2 7.9 82 62-149 1-101 (306)
204 COG0287 TyrA Prephenate dehydr 95.4 0.12 2.5E-06 45.6 9.0 103 58-163 3-112 (279)
205 TIGR02622 CDP_4_6_dhtase CDP-g 95.3 0.15 3.2E-06 44.4 9.5 90 58-149 4-127 (349)
206 PF00044 Gp_dh_N: Glyceraldehy 95.3 0.0062 1.4E-07 49.1 0.8 86 59-146 1-118 (151)
207 COG4693 PchG Oxidoreductase (N 95.3 0.018 3.8E-07 51.9 3.7 100 59-165 5-114 (361)
208 COG0136 Asd Aspartate-semialde 95.2 0.064 1.4E-06 48.7 7.1 86 59-144 2-94 (334)
209 TIGR01181 dTDP_gluc_dehyt dTDP 95.2 0.11 2.5E-06 43.2 8.1 64 60-125 1-82 (317)
210 PRK12825 fabG 3-ketoacyl-(acyl 95.2 0.12 2.5E-06 41.4 7.8 83 58-150 6-93 (249)
211 PLN02696 1-deoxy-D-xylulose-5- 95.2 0.08 1.7E-06 49.9 7.8 107 55-179 54-196 (454)
212 PLN02214 cinnamoyl-CoA reducta 95.2 0.14 3.1E-06 44.8 9.0 90 57-149 9-127 (342)
213 PRK06129 3-hydroxyacyl-CoA deh 95.2 0.032 7E-07 48.6 4.9 74 59-137 3-104 (308)
214 PRK12475 thiamine/molybdopteri 95.2 0.11 2.4E-06 46.6 8.4 34 58-94 24-58 (338)
215 PRK05447 1-deoxy-D-xylulose 5- 95.1 0.039 8.5E-07 50.9 5.5 87 59-146 2-121 (385)
216 PRK12320 hypothetical protein; 95.1 0.058 1.2E-06 53.2 6.9 87 59-150 1-103 (699)
217 PRK10538 malonic semialdehyde 95.1 0.16 3.5E-06 41.7 8.6 81 59-151 1-84 (248)
218 PRK09414 glutamate dehydrogena 95.1 0.079 1.7E-06 49.7 7.4 100 57-160 231-356 (445)
219 PRK12828 short chain dehydroge 95.0 0.29 6.2E-06 39.0 9.5 83 58-151 7-92 (239)
220 TIGR01745 asd_gamma aspartate- 95.0 0.073 1.6E-06 48.8 6.7 82 59-143 1-91 (366)
221 PRK07577 short chain dehydroge 95.0 0.32 7E-06 39.0 9.8 75 58-151 3-78 (234)
222 COG3804 Uncharacterized conser 94.9 0.083 1.8E-06 47.7 6.8 106 59-169 3-125 (350)
223 PRK00683 murD UDP-N-acetylmura 94.9 0.049 1.1E-06 49.4 5.5 77 59-142 4-85 (418)
224 PRK06139 short chain dehydroge 94.9 0.077 1.7E-06 46.8 6.6 83 58-151 7-94 (330)
225 PRK06953 short chain dehydroge 94.9 0.14 3.1E-06 41.3 7.7 79 59-152 2-81 (222)
226 PLN02662 cinnamyl-alcohol dehy 94.9 0.17 3.6E-06 42.9 8.3 90 57-149 3-127 (322)
227 PRK12938 acetyacetyl-CoA reduc 94.9 0.2 4.4E-06 40.6 8.5 84 59-152 4-92 (246)
228 PRK06179 short chain dehydroge 94.9 0.27 5.9E-06 40.6 9.4 77 58-151 4-83 (270)
229 PRK05865 hypothetical protein; 94.8 0.11 2.4E-06 52.3 8.1 89 59-151 1-105 (854)
230 PRK08278 short chain dehydroge 94.8 0.15 3.3E-06 42.8 7.7 88 58-151 6-100 (273)
231 COG0569 TrkA K+ transport syst 94.8 0.06 1.3E-06 45.5 5.3 87 59-148 1-100 (225)
232 PRK09186 flagellin modificatio 94.7 0.19 4.1E-06 41.0 8.0 86 57-148 3-91 (256)
233 PRK07231 fabG 3-ketoacyl-(acyl 94.7 0.18 3.9E-06 40.8 7.8 84 58-151 5-91 (251)
234 TIGR02853 spore_dpaA dipicolin 94.7 0.051 1.1E-06 47.6 4.9 85 58-148 151-240 (287)
235 PRK05993 short chain dehydroge 94.7 0.2 4.3E-06 42.1 8.2 79 58-151 4-86 (277)
236 TIGR02355 moeB molybdopterin s 94.7 0.19 4.2E-06 42.9 8.2 87 58-149 24-148 (240)
237 PF02737 3HCDH_N: 3-hydroxyacy 94.7 0.012 2.6E-07 48.0 0.7 93 60-159 1-125 (180)
238 PLN02778 3,5-epimerase/4-reduc 94.7 0.18 3.9E-06 43.6 8.1 79 58-146 9-108 (298)
239 PRK08328 hypothetical protein; 94.7 0.16 3.6E-06 42.9 7.7 34 58-94 27-61 (231)
240 TIGR02356 adenyl_thiF thiazole 94.6 0.14 3.1E-06 42.3 7.0 34 58-94 21-55 (202)
241 PRK06523 short chain dehydroge 94.6 0.26 5.7E-06 40.4 8.6 75 58-150 9-86 (260)
242 PRK06138 short chain dehydroge 94.6 0.16 3.5E-06 41.2 7.2 84 58-151 5-91 (252)
243 PRK06180 short chain dehydroge 94.6 0.32 7E-06 40.7 9.3 80 58-151 4-88 (277)
244 PRK06057 short chain dehydroge 94.6 0.37 7.9E-06 39.6 9.4 80 58-151 7-89 (255)
245 PRK07890 short chain dehydroge 94.5 0.12 2.6E-06 42.1 6.4 84 57-151 4-92 (258)
246 PRK07819 3-hydroxybutyryl-CoA 94.5 0.083 1.8E-06 46.0 5.7 102 58-163 5-136 (286)
247 PRK08177 short chain dehydroge 94.5 0.17 3.6E-06 41.0 7.1 80 59-151 2-81 (225)
248 cd01483 E1_enzyme_family Super 94.5 0.22 4.7E-06 38.3 7.4 32 60-94 1-33 (143)
249 PRK05693 short chain dehydroge 94.5 0.21 4.5E-06 41.7 7.8 78 59-151 2-82 (274)
250 PTZ00023 glyceraldehyde-3-phos 94.5 0.072 1.6E-06 48.3 5.3 88 59-149 3-122 (337)
251 COG1086 Predicted nucleoside-d 94.5 0.099 2.2E-06 50.6 6.5 104 58-163 250-400 (588)
252 PRK12827 short chain dehydroge 94.5 0.34 7.3E-06 39.0 8.8 87 58-151 6-97 (249)
253 PRK12744 short chain dehydroge 94.5 0.32 6.8E-06 40.1 8.8 87 58-151 8-99 (257)
254 PRK07454 short chain dehydroge 94.5 0.25 5.5E-06 40.0 8.1 84 57-151 5-93 (241)
255 COG1064 AdhP Zn-dependent alco 94.4 0.078 1.7E-06 48.2 5.5 88 53-144 162-256 (339)
256 PRK07814 short chain dehydroge 94.4 0.23 5E-06 41.2 7.9 82 58-150 10-96 (263)
257 PLN03096 glyceraldehyde-3-phos 94.4 0.094 2E-06 48.6 6.0 85 59-146 61-180 (395)
258 PRK06398 aldose dehydrogenase; 94.4 0.31 6.8E-06 40.5 8.7 74 59-151 7-82 (258)
259 COG2085 Predicted dinucleotide 94.4 0.22 4.8E-06 42.6 7.8 87 59-148 2-93 (211)
260 PRK05690 molybdopterin biosynt 94.4 0.16 3.4E-06 43.5 7.0 34 58-94 32-66 (245)
261 cd01065 NAD_bind_Shikimate_DH 94.4 0.013 2.7E-07 45.0 0.2 67 58-129 19-94 (155)
262 KOG0023 Alcohol dehydrogenase, 94.3 0.27 5.9E-06 45.0 8.7 93 53-163 177-269 (360)
263 cd00401 AdoHcyase S-adenosyl-L 94.3 0.1 2.2E-06 48.4 6.1 84 57-144 201-286 (413)
264 PRK08340 glucose-1-dehydrogena 94.3 0.15 3.2E-06 42.2 6.5 83 59-151 1-86 (259)
265 PLN02206 UDP-glucuronate decar 94.3 0.11 2.4E-06 48.0 6.2 87 56-146 117-231 (442)
266 PRK09466 metL bifunctional asp 94.2 0.23 5.1E-06 49.7 8.8 109 57-168 457-595 (810)
267 PLN02306 hydroxypyruvate reduc 94.2 0.18 3.9E-06 46.2 7.5 99 58-162 165-285 (386)
268 PRK09436 thrA bifunctional asp 94.2 0.18 3.9E-06 50.3 8.0 111 57-170 464-603 (819)
269 PRK12429 3-hydroxybutyrate deh 94.2 0.31 6.6E-06 39.6 8.1 83 58-150 4-90 (258)
270 PRK08057 cobalt-precorrin-6x r 94.2 0.19 4E-06 43.6 7.1 87 58-146 2-98 (248)
271 PRK15057 UDP-glucose 6-dehydro 94.2 0.16 3.4E-06 46.4 7.0 101 59-165 1-133 (388)
272 COG0460 ThrA Homoserine dehydr 94.2 0.18 4E-06 45.8 7.3 106 57-165 2-130 (333)
273 PRK05653 fabG 3-ketoacyl-(acyl 94.2 0.37 8.1E-06 38.5 8.4 81 58-148 5-90 (246)
274 PLN02572 UDP-sulfoquinovose sy 94.2 0.41 8.9E-06 44.0 9.7 28 59-86 48-75 (442)
275 PRK05884 short chain dehydroge 94.1 0.27 5.7E-06 40.3 7.6 74 59-146 1-75 (223)
276 PLN02583 cinnamoyl-CoA reducta 94.1 0.43 9.2E-06 40.8 9.2 32 58-90 6-37 (297)
277 PLN02494 adenosylhomocysteinas 94.1 0.095 2.1E-06 49.7 5.5 100 58-163 254-356 (477)
278 PRK07985 oxidoreductase; Provi 94.1 0.42 9.2E-06 40.9 9.1 85 58-151 49-138 (294)
279 PRK05557 fabG 3-ketoacyl-(acyl 94.0 0.62 1.4E-05 37.2 9.4 85 58-151 5-93 (248)
280 PLN02358 glyceraldehyde-3-phos 94.0 0.08 1.7E-06 47.9 4.6 88 57-146 4-125 (338)
281 PRK15182 Vi polysaccharide bio 94.0 0.2 4.3E-06 46.3 7.3 65 57-127 5-87 (425)
282 PRK08267 short chain dehydroge 94.0 0.16 3.4E-06 41.8 6.1 79 59-151 2-87 (260)
283 PLN02260 probable rhamnose bio 94.0 0.21 4.6E-06 47.7 7.7 81 56-146 378-479 (668)
284 PRK06841 short chain dehydroge 94.0 0.22 4.8E-06 40.7 6.8 82 58-151 15-99 (255)
285 PRK07825 short chain dehydroge 94.0 0.48 1E-05 39.3 8.9 79 59-151 6-88 (273)
286 PRK15425 gapA glyceraldehyde-3 93.9 0.086 1.9E-06 47.7 4.6 86 59-146 3-119 (331)
287 PRK07326 short chain dehydroge 93.9 0.46 9.9E-06 38.2 8.5 83 58-150 6-91 (237)
288 PF10087 DUF2325: Uncharacteri 93.8 0.49 1.1E-05 34.7 7.8 84 60-152 1-87 (97)
289 PRK12939 short chain dehydroge 93.8 0.57 1.2E-05 37.8 8.9 84 58-151 7-94 (250)
290 PRK06500 short chain dehydroge 93.8 0.45 9.8E-06 38.4 8.3 80 58-151 6-90 (249)
291 PRK12745 3-ketoacyl-(acyl-carr 93.7 0.64 1.4E-05 37.8 9.2 84 59-151 3-90 (256)
292 TIGR01472 gmd GDP-mannose 4,6- 93.7 0.46 9.9E-06 41.2 8.7 28 59-86 1-28 (343)
293 PRK07878 molybdopterin biosynt 93.7 0.36 7.8E-06 44.0 8.4 35 57-94 41-76 (392)
294 PRK07729 glyceraldehyde-3-phos 93.7 0.11 2.3E-06 47.3 4.9 87 59-148 3-120 (343)
295 PRK09496 trkA potassium transp 93.7 0.11 2.3E-06 46.8 4.9 87 59-150 1-101 (453)
296 PF02558 ApbA: Ketopantoate re 93.7 0.14 3E-06 39.3 4.9 91 61-155 1-108 (151)
297 PRK08217 fabG 3-ketoacyl-(acyl 93.7 0.28 6.1E-06 39.5 6.9 83 58-151 5-92 (253)
298 PRK06172 short chain dehydroge 93.6 0.32 6.9E-06 39.8 7.2 83 58-151 7-94 (253)
299 COG0451 WcaG Nucleoside-diphos 93.6 0.37 8.1E-06 40.1 7.7 32 60-93 2-33 (314)
300 cd01075 NAD_bind_Leu_Phe_Val_D 93.6 0.11 2.3E-06 43.1 4.3 83 58-148 28-115 (200)
301 PLN02896 cinnamyl-alcohol dehy 93.6 0.45 9.8E-06 41.4 8.5 29 58-86 10-38 (353)
302 PRK06124 gluconate 5-dehydroge 93.6 0.54 1.2E-05 38.4 8.5 84 57-151 10-98 (256)
303 TIGR01832 kduD 2-deoxy-D-gluco 93.5 0.73 1.6E-05 37.4 9.1 81 58-151 5-90 (248)
304 PRK08703 short chain dehydroge 93.5 0.26 5.7E-06 40.0 6.5 34 59-94 7-40 (239)
305 PRK08642 fabG 3-ketoacyl-(acyl 93.5 0.62 1.3E-05 37.8 8.6 80 58-150 5-90 (253)
306 PRK12746 short chain dehydroge 93.5 0.61 1.3E-05 38.0 8.6 85 58-151 6-100 (254)
307 PLN02427 UDP-apiose/xylose syn 93.5 0.47 1E-05 42.0 8.5 33 57-91 13-46 (386)
308 PF02670 DXP_reductoisom: 1-de 93.4 0.091 2E-06 41.6 3.5 84 61-146 1-120 (129)
309 PF01073 3Beta_HSD: 3-beta hyd 93.4 0.33 7.1E-06 42.0 7.3 83 62-146 1-113 (280)
310 cd00757 ThiF_MoeB_HesA_family 93.4 0.28 6E-06 41.1 6.6 34 58-94 21-55 (228)
311 PRK10084 dTDP-glucose 4,6 dehy 93.4 0.46 1E-05 41.0 8.1 66 59-125 1-82 (352)
312 PLN02653 GDP-mannose 4,6-dehyd 93.3 0.65 1.4E-05 40.1 9.0 29 58-86 6-34 (340)
313 PRK06171 sorbitol-6-phosphate 93.3 0.83 1.8E-05 37.7 9.2 76 58-151 9-87 (266)
314 PRK07774 short chain dehydroge 93.3 0.51 1.1E-05 38.3 7.8 83 58-151 6-93 (250)
315 TIGR03589 PseB UDP-N-acetylglu 93.3 0.35 7.6E-06 42.0 7.3 89 58-150 4-126 (324)
316 TIGR00243 Dxr 1-deoxy-D-xylulo 93.3 0.27 5.8E-06 45.6 6.8 86 59-146 2-123 (389)
317 PRK07523 gluconate 5-dehydroge 93.3 0.73 1.6E-05 37.8 8.8 83 58-151 10-97 (255)
318 PRK06194 hypothetical protein; 93.2 0.37 7.9E-06 40.2 7.1 83 58-151 6-93 (287)
319 TIGR01724 hmd_rel H2-forming N 93.2 0.97 2.1E-05 41.3 10.1 86 71-161 32-128 (341)
320 PRK10217 dTDP-glucose 4,6-dehy 93.2 0.67 1.5E-05 40.0 8.9 65 59-124 2-82 (355)
321 PRK07688 thiamine/molybdopteri 93.2 0.34 7.5E-06 43.5 7.2 34 58-94 24-58 (339)
322 PRK06198 short chain dehydroge 93.1 0.64 1.4E-05 38.0 8.2 84 58-152 6-95 (260)
323 COG2099 CobK Precorrin-6x redu 93.1 0.74 1.6E-05 40.6 9.0 106 58-166 2-127 (257)
324 PLN02650 dihydroflavonol-4-red 93.1 0.45 9.8E-06 41.3 7.7 29 58-86 5-33 (351)
325 PRK07403 glyceraldehyde-3-phos 93.1 0.11 2.3E-06 47.3 3.8 86 59-146 2-120 (337)
326 PLN02986 cinnamyl-alcohol dehy 93.1 0.91 2E-05 38.8 9.4 33 57-90 4-36 (322)
327 PRK11150 rfaD ADP-L-glycero-D- 93.1 0.27 5.9E-06 41.6 6.2 85 61-146 2-114 (308)
328 PRK05872 short chain dehydroge 93.1 0.38 8.1E-06 41.1 7.0 80 58-151 9-95 (296)
329 PRK08085 gluconate 5-dehydroge 93.0 0.94 2E-05 37.1 9.1 83 58-151 9-96 (254)
330 KOG0409 Predicted dehydrogenas 93.0 0.17 3.6E-06 45.9 4.9 105 57-165 34-146 (327)
331 PRK01710 murD UDP-N-acetylmura 93.0 0.21 4.5E-06 45.9 5.8 81 58-144 14-105 (458)
332 PRK06463 fabG 3-ketoacyl-(acyl 93.0 1.3 2.7E-05 36.4 9.9 80 58-151 7-89 (255)
333 PRK11908 NAD-dependent epimera 93.0 0.55 1.2E-05 40.7 8.1 84 59-146 2-116 (347)
334 PRK06719 precorrin-2 dehydroge 93.0 0.16 3.5E-06 40.7 4.4 78 57-140 12-94 (157)
335 PRK07109 short chain dehydroge 93.0 0.61 1.3E-05 40.9 8.4 83 58-151 8-95 (334)
336 PLN02272 glyceraldehyde-3-phos 93.0 0.13 2.9E-06 48.0 4.5 86 59-146 86-204 (421)
337 PRK07060 short chain dehydroge 93.0 1.1 2.3E-05 36.2 9.3 78 58-151 9-87 (245)
338 PRK05867 short chain dehydroge 93.0 0.82 1.8E-05 37.5 8.7 83 58-151 9-96 (253)
339 cd01487 E1_ThiF_like E1_ThiF_l 93.0 0.52 1.1E-05 38.2 7.4 32 60-94 1-33 (174)
340 COG1052 LdhA Lactate dehydroge 93.0 0.35 7.6E-06 43.4 7.0 105 58-169 146-256 (324)
341 cd01076 NAD_bind_1_Glu_DH NAD( 92.9 0.18 4E-06 42.8 4.9 32 58-91 31-62 (227)
342 PTZ00075 Adenosylhomocysteinas 92.9 0.29 6.3E-06 46.4 6.6 88 58-152 254-344 (476)
343 cd01491 Ube1_repeat1 Ubiquitin 92.9 0.67 1.5E-05 41.1 8.5 37 58-96 19-55 (286)
344 PRK08017 oxidoreductase; Provi 92.8 1.3 2.8E-05 36.0 9.6 77 60-151 4-84 (256)
345 PRK05650 short chain dehydroge 92.8 0.65 1.4E-05 38.6 7.9 81 60-151 2-87 (270)
346 PRK06901 aspartate-semialdehyd 92.8 0.23 4.9E-06 45.0 5.5 83 59-146 4-94 (322)
347 PRK12826 3-ketoacyl-(acyl-carr 92.8 0.76 1.6E-05 37.0 8.1 83 58-151 6-93 (251)
348 PF01370 Epimerase: NAD depend 92.8 0.44 9.6E-06 38.0 6.7 87 61-148 1-115 (236)
349 KOG4039 Serine/threonine kinas 92.7 0.89 1.9E-05 39.0 8.7 89 58-148 18-130 (238)
350 PRK14031 glutamate dehydrogena 92.7 0.5 1.1E-05 44.4 7.9 33 57-92 227-259 (444)
351 PLN02989 cinnamyl-alcohol dehy 92.7 0.85 1.8E-05 38.9 8.7 92 56-149 3-129 (325)
352 PRK05565 fabG 3-ketoacyl-(acyl 92.7 0.31 6.7E-06 39.2 5.7 83 59-151 6-93 (247)
353 PRK05786 fabG 3-ketoacyl-(acyl 92.7 0.74 1.6E-05 37.0 8.0 82 58-150 5-90 (238)
354 PRK07062 short chain dehydroge 92.7 1.1 2.5E-05 36.8 9.2 84 58-151 8-97 (265)
355 PRK08993 2-deoxy-D-gluconate 3 92.7 1.3 2.7E-05 36.6 9.4 81 59-151 11-95 (253)
356 TIGR02197 heptose_epim ADP-L-g 92.7 0.6 1.3E-05 39.2 7.6 84 61-146 1-112 (314)
357 PF07755 DUF1611: Protein of u 92.7 0.092 2E-06 47.0 2.8 73 90-166 1-86 (301)
358 PRK12481 2-deoxy-D-gluconate 3 92.6 0.92 2E-05 37.5 8.6 81 58-151 8-93 (251)
359 PRK06935 2-deoxy-D-gluconate 3 92.6 0.61 1.3E-05 38.4 7.5 83 57-151 14-101 (258)
360 cd00755 YgdL_like Family of ac 92.6 0.34 7.3E-06 41.5 6.1 89 58-150 11-137 (231)
361 TIGR03325 BphB_TodD cis-2,3-di 92.6 0.8 1.7E-05 37.9 8.2 80 58-151 5-89 (262)
362 PTZ00325 malate dehydrogenase; 92.6 0.76 1.7E-05 41.2 8.5 100 55-160 5-135 (321)
363 COG1810 Uncharacterized protei 92.6 1.5 3.3E-05 37.9 10.0 97 59-164 2-103 (224)
364 PRK13394 3-hydroxybutyrate deh 92.6 0.94 2E-05 36.9 8.5 83 58-151 7-94 (262)
365 PRK07024 short chain dehydroge 92.5 0.81 1.8E-05 37.7 8.1 83 59-151 3-88 (257)
366 PRK07677 short chain dehydroge 92.5 0.62 1.3E-05 38.2 7.4 81 59-150 2-87 (252)
367 PRK08226 short chain dehydroge 92.5 0.72 1.5E-05 37.9 7.7 83 58-151 6-92 (263)
368 PRK07904 short chain dehydroge 92.5 0.61 1.3E-05 38.9 7.4 89 55-152 5-98 (253)
369 COG0300 DltE Short-chain dehyd 92.5 0.54 1.2E-05 41.4 7.3 103 57-169 5-118 (265)
370 PRK09135 pteridine reductase; 92.4 0.99 2.2E-05 36.3 8.4 85 58-151 6-95 (249)
371 PF02571 CbiJ: Precorrin-6x re 92.4 0.38 8.2E-06 41.6 6.2 83 59-144 1-97 (249)
372 PRK05597 molybdopterin biosynt 92.4 0.59 1.3E-05 42.1 7.7 89 58-151 28-154 (355)
373 PRK08306 dipicolinate synthase 92.4 0.13 2.8E-06 45.1 3.5 69 58-131 152-225 (296)
374 PRK07666 fabG 3-ketoacyl-(acyl 92.4 0.73 1.6E-05 37.3 7.6 83 58-151 7-94 (239)
375 TIGR02354 thiF_fam2 thiamine b 92.4 0.43 9.4E-06 39.7 6.4 93 58-154 21-124 (200)
376 TIGR02279 PaaC-3OHAcCoADH 3-hy 92.4 0.21 4.5E-06 47.2 5.0 117 57-177 4-152 (503)
377 PRK07063 short chain dehydroge 92.4 0.53 1.2E-05 38.7 6.9 84 58-151 7-96 (260)
378 PTZ00434 cytosolic glyceraldeh 92.4 0.41 9E-06 44.0 6.7 86 59-146 4-134 (361)
379 PRK07576 short chain dehydroge 92.4 0.48 1E-05 39.5 6.7 80 57-146 8-92 (264)
380 PRK05717 oxidoreductase; Valid 92.3 1.1 2.5E-05 36.7 8.7 80 59-152 11-95 (255)
381 PRK12937 short chain dehydroge 92.3 1.1 2.3E-05 36.2 8.4 84 58-151 5-93 (245)
382 PRK12823 benD 1,6-dihydroxycyc 92.2 0.93 2E-05 37.2 8.1 81 58-150 8-93 (260)
383 PRK07806 short chain dehydroge 92.2 0.98 2.1E-05 36.6 8.2 83 59-151 7-94 (248)
384 PRK08213 gluconate 5-dehydroge 92.2 0.71 1.5E-05 37.9 7.4 84 57-151 11-99 (259)
385 PRK06924 short chain dehydroge 92.2 1.1 2.3E-05 36.5 8.4 68 60-139 3-73 (251)
386 PRK05876 short chain dehydroge 92.2 0.96 2.1E-05 38.2 8.3 82 59-151 7-93 (275)
387 PRK08261 fabG 3-ketoacyl-(acyl 92.2 1.1 2.5E-05 40.4 9.2 83 57-151 209-294 (450)
388 PRK08862 short chain dehydroge 92.2 0.6 1.3E-05 38.6 6.9 82 58-150 5-92 (227)
389 PRK12936 3-ketoacyl-(acyl-carr 92.1 1.8 3.9E-05 34.8 9.5 80 58-151 6-90 (245)
390 KOG1502 Flavonol reductase/cin 92.1 0.54 1.2E-05 42.7 7.0 88 57-148 5-127 (327)
391 PRK06181 short chain dehydroge 92.1 0.91 2E-05 37.3 7.9 82 59-151 2-88 (263)
392 TIGR03206 benzo_BadH 2-hydroxy 92.1 0.38 8.2E-06 38.9 5.5 84 58-150 3-89 (250)
393 PRK09242 tropinone reductase; 92.0 0.95 2.1E-05 37.1 7.9 84 58-151 9-98 (257)
394 PRK05866 short chain dehydroge 92.0 0.5 1.1E-05 40.5 6.5 84 58-152 40-128 (293)
395 PRK08125 bifunctional UDP-gluc 92.0 0.65 1.4E-05 44.7 7.9 37 54-92 311-348 (660)
396 PRK12742 oxidoreductase; Provi 92.0 1.2 2.7E-05 35.7 8.5 29 58-86 6-34 (237)
397 PRK03562 glutathione-regulated 92.0 0.3 6.6E-06 47.1 5.7 102 58-162 400-510 (621)
398 COG4091 Predicted homoserine d 92.0 0.52 1.1E-05 43.9 6.8 88 56-145 15-131 (438)
399 PRK05875 short chain dehydroge 92.0 0.39 8.5E-06 39.8 5.6 86 58-150 7-95 (276)
400 PRK03659 glutathione-regulated 92.0 0.35 7.6E-06 46.4 6.0 81 58-141 400-490 (601)
401 PRK07831 short chain dehydroge 92.0 1.7 3.7E-05 35.8 9.4 85 57-151 16-107 (262)
402 PRK07067 sorbitol dehydrogenas 91.9 1.3 2.7E-05 36.4 8.6 82 58-151 6-90 (257)
403 PRK00421 murC UDP-N-acetylmura 91.9 0.25 5.5E-06 45.2 4.8 84 55-143 4-93 (461)
404 PF02719 Polysacc_synt_2: Poly 91.9 0.24 5.3E-06 44.2 4.5 112 61-174 1-172 (293)
405 PRK14106 murD UDP-N-acetylmura 91.9 0.2 4.4E-06 45.3 4.1 81 58-143 5-95 (450)
406 PRK12384 sorbitol-6-phosphate 91.9 1 2.2E-05 36.9 7.9 83 59-151 3-91 (259)
407 PRK07578 short chain dehydroge 91.8 1.3 2.9E-05 35.0 8.3 32 59-93 1-32 (199)
408 PRK02472 murD UDP-N-acetylmura 91.8 0.32 7E-06 43.9 5.3 82 58-144 5-96 (447)
409 PRK09072 short chain dehydroge 91.8 0.69 1.5E-05 38.2 6.9 85 58-152 5-91 (263)
410 PLN02260 probable rhamnose bio 91.8 0.79 1.7E-05 43.9 8.2 32 58-91 6-39 (668)
411 PRK08268 3-hydroxy-acyl-CoA de 91.8 0.17 3.7E-06 47.7 3.7 112 57-172 6-147 (507)
412 PLN02700 homoserine dehydrogen 91.8 0.43 9.4E-06 43.9 6.1 48 115-163 108-155 (377)
413 PRK12935 acetoacetyl-CoA reduc 91.8 0.85 1.8E-05 37.0 7.3 84 58-151 6-94 (247)
414 PRK06200 2,3-dihydroxy-2,3-dih 91.8 0.93 2E-05 37.4 7.6 80 58-151 6-90 (263)
415 PRK07035 short chain dehydroge 91.8 1 2.2E-05 36.7 7.8 81 59-148 9-93 (252)
416 PRK07102 short chain dehydroge 91.8 0.79 1.7E-05 37.3 7.1 82 59-151 2-86 (243)
417 PRK08220 2,3-dihydroxybenzoate 91.7 1.5 3.3E-05 35.5 8.8 76 58-151 8-86 (252)
418 PRK09287 6-phosphogluconate de 91.7 0.53 1.1E-05 44.2 6.7 96 70-168 1-108 (459)
419 PRK08945 putative oxoacyl-(acy 91.7 1.4 3E-05 35.9 8.5 85 57-151 11-102 (247)
420 PTZ00079 NADP-specific glutama 91.6 1.1 2.3E-05 42.4 8.7 32 58-91 237-268 (454)
421 PRK08628 short chain dehydroge 91.6 1.7 3.7E-05 35.6 9.0 82 59-151 8-93 (258)
422 PRK07453 protochlorophyllide o 91.6 0.76 1.6E-05 39.5 7.2 84 58-151 6-93 (322)
423 PRK07069 short chain dehydroge 91.6 2.4 5.2E-05 34.3 9.7 83 60-151 1-89 (251)
424 PRK07074 short chain dehydroge 91.6 0.85 1.9E-05 37.3 7.2 82 59-151 3-87 (257)
425 PRK08643 acetoin reductase; Va 91.6 0.44 9.5E-06 39.0 5.4 83 59-151 3-89 (256)
426 COG0702 Predicted nucleoside-d 91.5 0.95 2.1E-05 36.9 7.4 64 59-125 1-72 (275)
427 TIGR01746 Thioester-redct thio 91.5 1.2 2.7E-05 37.6 8.3 30 60-90 1-32 (367)
428 PRK08265 short chain dehydroge 91.5 1.6 3.5E-05 36.1 8.9 80 58-151 6-90 (261)
429 PRK08416 7-alpha-hydroxysteroi 91.5 0.88 1.9E-05 37.6 7.3 84 58-150 8-96 (260)
430 PRK06114 short chain dehydroge 91.5 2 4.3E-05 35.3 9.3 84 58-151 8-96 (254)
431 PRK15116 sulfur acceptor prote 91.4 0.85 1.8E-05 40.1 7.3 34 57-93 29-63 (268)
432 PRK08644 thiamine biosynthesis 91.4 0.67 1.4E-05 38.8 6.4 33 58-93 28-61 (212)
433 TIGR00112 proC pyrroline-5-car 91.3 0.99 2.1E-05 38.3 7.5 59 101-161 30-90 (245)
434 cd01080 NAD_bind_m-THF_DH_Cycl 91.3 0.4 8.8E-06 39.1 4.9 65 58-140 44-109 (168)
435 PRK07411 hypothetical protein; 91.3 0.75 1.6E-05 42.0 7.2 36 58-96 38-74 (390)
436 PRK07877 hypothetical protein; 91.3 0.55 1.2E-05 46.6 6.7 106 58-168 107-224 (722)
437 PRK08277 D-mannonate oxidoredu 91.3 1.4 3E-05 36.7 8.2 83 58-151 10-97 (278)
438 PRK06482 short chain dehydroge 91.3 1.8 4E-05 35.9 8.9 79 59-151 3-86 (276)
439 TIGR00640 acid_CoA_mut_C methy 91.3 1.3 2.8E-05 34.8 7.5 79 71-163 18-105 (132)
440 TIGR01963 PHB_DH 3-hydroxybuty 91.2 1.6 3.4E-05 35.3 8.3 82 59-151 2-88 (255)
441 PRK09496 trkA potassium transp 91.2 1.1 2.4E-05 40.3 8.1 89 57-148 230-330 (453)
442 PRK07478 short chain dehydroge 91.2 0.98 2.1E-05 37.0 7.1 83 58-151 6-93 (254)
443 KOG1254 ATP-citrate lyase [Ene 91.1 0.29 6.3E-06 47.0 4.4 108 54-166 5-121 (600)
444 PLN02477 glutamate dehydrogena 91.1 1.4 3E-05 41.0 8.8 33 58-92 206-238 (410)
445 PRK08264 short chain dehydroge 91.1 1.4 3.1E-05 35.4 8.0 29 58-86 6-35 (238)
446 PRK08263 short chain dehydroge 91.1 2.1 4.5E-05 35.7 9.2 80 59-152 4-88 (275)
447 PRK07791 short chain dehydroge 91.1 1.5 3.2E-05 37.3 8.3 91 58-151 6-102 (286)
448 cd01493 APPBP1_RUB Ubiquitin a 91.1 0.98 2.1E-05 42.1 7.7 34 58-94 20-54 (425)
449 PRK07832 short chain dehydroge 91.0 1.8 3.8E-05 36.1 8.6 82 60-151 2-88 (272)
450 PRK09291 short chain dehydroge 90.9 1.7 3.6E-05 35.4 8.2 30 59-89 3-32 (257)
451 PRK12743 oxidoreductase; Provi 90.9 0.75 1.6E-05 37.9 6.2 84 59-151 3-90 (256)
452 PRK06914 short chain dehydroge 90.9 1.6 3.4E-05 36.3 8.1 81 59-151 4-91 (280)
453 PRK08324 short chain dehydroge 90.9 1.3 2.7E-05 43.0 8.6 83 58-151 422-508 (681)
454 PRK06128 oxidoreductase; Provi 90.8 1.7 3.6E-05 37.1 8.5 85 58-151 55-144 (300)
455 PF02844 GARS_N: Phosphoribosy 90.8 0.18 3.9E-06 38.4 2.2 82 59-144 1-90 (100)
456 PLN02253 xanthoxin dehydrogena 90.8 1 2.2E-05 37.5 7.0 84 58-151 18-104 (280)
457 PRK06718 precorrin-2 dehydroge 90.8 0.74 1.6E-05 38.3 6.1 113 57-175 9-153 (202)
458 TIGR02964 xanthine_xdhC xanthi 90.6 2.9 6.2E-05 36.0 9.8 102 55-159 97-220 (246)
459 PRK05086 malate dehydrogenase; 90.6 1.6 3.5E-05 38.6 8.4 94 59-157 1-125 (312)
460 PRK06196 oxidoreductase; Provi 90.5 0.82 1.8E-05 39.2 6.3 81 58-151 26-109 (315)
461 PRK00141 murD UDP-N-acetylmura 90.5 0.3 6.4E-06 45.3 3.8 80 58-143 15-101 (473)
462 PRK03803 murD UDP-N-acetylmura 90.5 0.5 1.1E-05 43.0 5.2 37 55-94 3-39 (448)
463 PRK06079 enoyl-(acyl carrier p 90.5 1.5 3.2E-05 36.3 7.7 82 58-151 7-93 (252)
464 PRK08618 ornithine cyclodeamin 90.4 0.31 6.8E-06 43.1 3.8 96 58-160 127-236 (325)
465 PRK08309 short chain dehydroge 90.4 0.27 5.9E-06 40.1 3.1 83 59-142 1-101 (177)
466 TIGR01534 GAPDH-I glyceraldehy 90.4 0.67 1.4E-05 41.8 5.9 85 60-146 1-120 (327)
467 PRK07023 short chain dehydroge 90.4 2.4 5.1E-05 34.4 8.7 64 59-135 2-66 (243)
468 PRK12824 acetoacetyl-CoA reduc 90.4 1.9 4E-05 34.7 8.0 83 59-151 3-90 (245)
469 PRK05600 thiamine biosynthesis 90.4 0.68 1.5E-05 42.2 6.0 88 58-150 41-166 (370)
470 PLN00203 glutamyl-tRNA reducta 90.3 0.17 3.7E-06 48.2 2.1 102 58-164 266-397 (519)
471 PRK08589 short chain dehydroge 90.3 1.5 3.3E-05 36.6 7.7 83 58-151 6-92 (272)
472 PRK06947 glucose-1-dehydrogena 90.3 2 4.3E-05 34.9 8.1 84 59-150 3-89 (248)
473 PRK06077 fabG 3-ketoacyl-(acyl 90.3 2.7 5.9E-05 33.9 8.9 84 58-151 6-94 (252)
474 TIGR01087 murD UDP-N-acetylmur 90.3 0.55 1.2E-05 42.4 5.3 31 60-93 1-31 (433)
475 PF08484 Methyltransf_14: C-me 90.3 0.82 1.8E-05 37.0 5.8 86 56-146 66-158 (160)
476 TIGR01763 MalateDH_bact malate 90.3 1.5 3.3E-05 38.6 7.9 83 58-146 1-115 (305)
477 PRK08762 molybdopterin biosynt 90.2 0.83 1.8E-05 41.2 6.3 34 57-93 134-168 (376)
478 PRK07792 fabG 3-ketoacyl-(acyl 90.1 1.8 3.9E-05 37.3 8.1 85 58-152 12-100 (306)
479 PRK05855 short chain dehydroge 90.1 1.5 3.3E-05 39.8 8.0 83 58-151 315-402 (582)
480 PRK06550 fabG 3-ketoacyl-(acyl 90.1 1.4 2.9E-05 35.5 6.9 33 59-93 6-38 (235)
481 PRK14030 glutamate dehydrogena 90.1 0.62 1.3E-05 43.9 5.5 30 57-88 227-256 (445)
482 PRK06483 dihydromonapterin red 90.0 2 4.3E-05 34.7 7.9 79 59-151 3-84 (236)
483 PRK09134 short chain dehydroge 89.9 3.1 6.8E-05 34.1 9.1 84 58-151 9-97 (258)
484 COG1023 Gnd Predicted 6-phosph 89.9 1.3 2.7E-05 39.6 6.9 109 59-169 1-114 (300)
485 PRK08063 enoyl-(acyl carrier p 89.9 2.5 5.5E-05 34.2 8.4 83 58-148 4-90 (250)
486 TIGR03026 NDP-sugDHase nucleot 89.9 1.1 2.4E-05 40.6 6.9 72 57-132 312-392 (411)
487 PRK06701 short chain dehydroge 89.8 2.2 4.8E-05 36.4 8.4 80 58-146 46-130 (290)
488 cd01484 E1-2_like Ubiquitin ac 89.8 1.3 2.9E-05 37.9 7.0 88 60-152 1-128 (234)
489 PRK05708 2-dehydropantoate 2-r 89.7 1.7 3.7E-05 38.0 7.7 94 58-156 2-112 (305)
490 PRK06197 short chain dehydroge 89.7 0.55 1.2E-05 40.0 4.6 84 58-151 16-105 (306)
491 PRK06484 short chain dehydroge 89.6 1.8 4E-05 39.5 8.1 111 57-181 4-127 (520)
492 PLN02237 glyceraldehyde-3-phos 89.6 0.55 1.2E-05 44.2 4.8 87 59-148 76-196 (442)
493 PTZ00117 malate dehydrogenase; 89.5 2.5 5.3E-05 37.5 8.7 88 57-150 4-123 (319)
494 PRK08289 glyceraldehyde-3-phos 89.5 0.63 1.4E-05 44.3 5.1 89 56-146 125-257 (477)
495 cd01078 NAD_bind_H4MPT_DH NADP 89.5 0.92 2E-05 36.6 5.5 35 57-93 27-61 (194)
496 COG4569 MhpF Acetaldehyde dehy 89.5 1.3 2.9E-05 38.7 6.7 87 57-145 3-100 (310)
497 TIGR01202 bchC 2-desacetyl-2-h 89.5 0.72 1.5E-05 39.7 5.1 84 57-144 144-228 (308)
498 PLN02686 cinnamoyl-CoA reducta 89.4 2.1 4.5E-05 38.1 8.2 32 58-90 53-84 (367)
499 KOG1014 17 beta-hydroxysteroid 89.4 0.73 1.6E-05 41.6 5.3 82 61-152 52-137 (312)
500 PF07085 DRTGG: DRTGG domain; 89.4 1.6 3.5E-05 32.1 6.3 87 81-173 6-93 (105)
No 1
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=99.97 E-value=1e-31 Score=231.57 Aligned_cols=129 Identities=65% Similarity=0.982 Sum_probs=121.4
Q ss_pred cccccccccccccCCCCCeeeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHh
Q 030169 34 APAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKA 113 (182)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~ 113 (182)
++....|.+.|.|.+|+.++++++++||++||||||+|+++.+.+++||+++| +|++|++.|+++.|+|||.|++|+.+
T Consensus 14 ~~~~~~~~~~s~y~~T~~nl~ink~TkVi~QGfTGKqgTFHs~q~~eYgTk~V-gG~~pkK~Gt~HLG~PVF~sV~eA~~ 92 (329)
T KOG1255|consen 14 LSLGILRVFKSLYNKTISNLKINKDTKVICQGFTGKQGTFHSQQALEYGTKVV-GGVNPKKGGTTHLGLPVFNSVAEAKK 92 (329)
T ss_pred cCcchhhhhcchhhhhhhceeecCCceEEEecccCCccceeHHHHHHhCCcee-eccCCCcCcccccCchhhhhHHHHHH
Confidence 33344555567888999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 114 ETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 114 ~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
++++|+.++||||..+..+++||+|+.|++|||||||+|.|||.++.++-
T Consensus 93 ~t~a~AsvIyVPpp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L 142 (329)
T KOG1255|consen 93 ETGADASVIYVPPPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHAL 142 (329)
T ss_pred hhCCCceEEEeCChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998765
No 2
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=99.97 E-value=2.3e-30 Score=229.24 Aligned_cols=118 Identities=73% Similarity=1.103 Sum_probs=113.5
Q ss_pred cCCCCCeeeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEec--CccccccHHHHHhccCCcEEEEe
Q 030169 46 AAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHL--GLPVFNSVAEAKAETKANASVIY 123 (182)
Q Consensus 46 ~~~~~~~~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~--GvPVy~Sv~ea~~~~~~DvaVdf 123 (182)
|++|++++++++++||+|||+||++|+.|++.|++||++|| |||+|+++|++++ |+|||+|++|+++++++|++++|
T Consensus 17 ~~~~~~~i~~~~~t~v~vqGitg~~g~~h~~~~~~ygt~iv-~GV~Pgkgg~~v~~~Gvpvy~sv~ea~~~~~~D~avI~ 95 (317)
T PTZ00187 17 SSTSAPRVWVNKNTKVICQGITGKQGTFHTEQAIEYGTKMV-GGVNPKKAGTTHLKHGLPVFATVKEAKKATGADASVIY 95 (317)
T ss_pred HhccCccEEEcCCCeEEEecCCChHHHHHHHHHHHhCCcEE-EEECCCCCCceEecCCccccCCHHHHhcccCCCEEEEe
Confidence 44999999999999999999999999999999999999999 9999999999999 99999999999997779999999
Q ss_pred eChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhc
Q 030169 124 VPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 124 Vpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak 164 (182)
||+.++.++++||+++||+.+||+|+|||++|+.+++++++
T Consensus 96 VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~ 136 (317)
T PTZ00187 96 VPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALL 136 (317)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHh
Confidence 99999999999999999999999999999999999987764
No 3
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=99.96 E-value=4.5e-29 Score=217.73 Aligned_cols=115 Identities=62% Similarity=0.919 Sum_probs=111.8
Q ss_pred CeeeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 51 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 51 ~~~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
|++++++++||+|||++|++|+++++.|++||+++| +||+|+++|+++.|+|||++++|+++++++|++++||||.+|.
T Consensus 1 m~il~~k~tkvivqGitg~~gtfh~~~~l~yGt~~V-~GvtPgkgG~~~~g~PVf~tV~EA~~~~~a~~svI~Vp~~~aa 79 (293)
T COG0074 1 MSILLNKDTKVIVQGITGKQGTFHTEQMLAYGTKIV-GGVTPGKGGQTILGLPVFNTVEEAVKETGANASVIFVPPPFAA 79 (293)
T ss_pred CceeecCCCeEEEeccccccchHHHHHHHHhCCcee-ecccCCCCceEEcCccHHHHHHHHHHhhCCCEEEEecCcHHHH
Confidence 678999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 131 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 131 ~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
|++.||+++||++|||||||+|++|+.++++.+++-
T Consensus 80 dai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~ 115 (293)
T COG0074 80 DAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREK 115 (293)
T ss_pred HHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999653
No 4
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=99.90 E-value=1.1e-23 Score=185.45 Aligned_cols=115 Identities=90% Similarity=1.286 Sum_probs=105.2
Q ss_pred CCeeeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHH
Q 030169 50 HPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 50 ~~~~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av 129 (182)
-|++++++++||+|||+||+.|+.+++.|++||++|+ |||+|++.++++.|+|+|+|++|+++..++|++++++|+..+
T Consensus 4 ~~~~~~~~~~~v~~~gi~~~~~~~~~~~~~~ygt~~~-~gV~p~~~~~~i~G~~~y~sv~dlp~~~~~DlAvI~vPa~~v 82 (300)
T PLN00125 4 PPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFA 82 (300)
T ss_pred CceEEecCCCeEEEecCCCHHHHHHHHHHHHhCCcEE-EEECCCCCCceEcCeeccCCHHHHhhccCCCEEEEecCHHHH
Confidence 3689999999999999999999999999999999999 999999877889999999999999985458999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH-HHhcc
Q 030169 130 AAAIMEAMEAELDLVVCITEGIPQHDMVINF-TRVNI 165 (182)
Q Consensus 130 ~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~-~~ak~ 165 (182)
.++++||.++|++.++++|+||++.+++++. +++++
T Consensus 83 ~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~ 119 (300)
T PLN00125 83 AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQ 119 (300)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhh
Confidence 9999999999999999999999999855444 44654
No 5
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=99.87 E-value=5.5e-22 Score=173.46 Aligned_cols=114 Identities=61% Similarity=0.962 Sum_probs=106.4
Q ss_pred eeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 53 ~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
+++++++||+|+|+||++|+.+++.|++||++++ +||+|++.+.++.|+|+|+|++|+++..++|++++++|+..+.++
T Consensus 1 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v-~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~ 79 (286)
T TIGR01019 1 ILLDKDTKVIVQGITGSQGSFHTEQMLAYGTNIV-GGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAPFAADA 79 (286)
T ss_pred CeecCCCcEEEecCCcHHHHHHHHHHHhCCCCEE-EEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHHHHHHH
Confidence 3789999999999999999999999999999988 999999777889999999999999984348999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
++||.++|++.++++|+||++++..+|.+.|++--
T Consensus 80 l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~g 114 (286)
T TIGR01019 80 IFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESG 114 (286)
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999997643
No 6
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=99.85 E-value=1.8e-21 Score=149.84 Aligned_cols=111 Identities=25% Similarity=0.336 Sum_probs=94.6
Q ss_pred ceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCC---CCeEe--------cCccccccHHHHHhccCCcEEEEeeCh
Q 030169 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKK---GGTEH--------LGLPVFNSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~---~G~~i--------~GvPVy~Sv~ea~~~~~~DvaVdfVpp 126 (182)
+||+|+|++||||+.+.+.+.+ .+++++ ++++++. .|+++ .|+|++++++++.+ ++|++|||+.|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv-~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~--~~DVvIDfT~p 77 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELV-GAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLE--EADVVIDFTNP 77 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEE-EEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTT--H-SEEEEES-H
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEE-EEEecCCcccccchhhhhhCcCCcccccchhHHHhcc--cCCEEEEcCCh
Confidence 5899999999999999999997 789999 9988887 33333 48999999999999 49999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccchhc-chh
Q 030169 127 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF-LNF 173 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~~-~~~ 173 (182)
+.+.+.+++|+++|+++|++ |||++.+|+.+|.++|+++||-. .||
T Consensus 78 ~~~~~~~~~~~~~g~~~ViG-TTG~~~~~~~~l~~~a~~~~vl~a~Nf 124 (124)
T PF01113_consen 78 DAVYDNLEYALKHGVPLVIG-TTGFSDEQIDELEELAKKIPVLIAPNF 124 (124)
T ss_dssp HHHHHHHHHHHHHT-EEEEE--SSSHHHHHHHHHHHTTTSEEEE-SSS
T ss_pred HHhHHHHHHHHhCCCCEEEE-CCCCCHHHHHHHHHHhccCCEEEeCCC
Confidence 99999999999999999999 99999999999999999999854 344
No 7
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=99.84 E-value=2.2e-20 Score=163.75 Aligned_cols=115 Identities=63% Similarity=0.989 Sum_probs=105.2
Q ss_pred CeeeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 51 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 51 ~~~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
|++++++++||+|+|+||+.|+.+.++|+++|++.+ .+|+|+..+.++.|+|+|+|++|+++.+++|++++++|++.+.
T Consensus 1 ~~~~~~~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v-~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v~ 79 (291)
T PRK05678 1 MSILINKDTKVIVQGITGKQGTFHTEQMLAYGTNIV-GGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPPPFAA 79 (291)
T ss_pred CceEecCCCeEEEeCCCchHHHHHHHHHHHCCCCEE-EEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCHHHHH
Confidence 467999999999999999999999999999998766 8999995446799999999999999832399999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 131 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 131 ~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+++++|.++|++.++++|+||+++|..+|.++|++-
T Consensus 80 ~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~ 115 (291)
T PRK05678 80 DAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERK 115 (291)
T ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999989999999764
No 8
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=99.78 E-value=1.5e-18 Score=128.19 Aligned_cols=94 Identities=32% Similarity=0.361 Sum_probs=79.9
Q ss_pred cCCceEEEEccCCCCchhhhH-HHHHhCCceE-EeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 56 DKNTRVICQGITGKNGTFHTE-QAIEYGTKMV-VGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k-~~~~~g~~IV-~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
|++++|+|+|+ |++|++... ....+|++++ +.++||++.|+++.|+|||++++|+.+.+++|++++++|++.+++++
T Consensus 1 nk~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~ 79 (96)
T PF02629_consen 1 NKKTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAEAAQEVA 79 (96)
T ss_dssp CTTEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HHHHHHHH
T ss_pred CCCCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHH
Confidence 57899999999 999997754 3335564443 15899999999999999999999998866799999999999999999
Q ss_pred HHHHHcCCCEEEEeCCC
Q 030169 134 MEAMEAELDLVVCITEG 150 (182)
Q Consensus 134 ~eAie~GIk~VV~iTeG 150 (182)
++++++||+.||++|+|
T Consensus 80 ~~~~~~gIk~i~nft~~ 96 (96)
T PF02629_consen 80 DELVEAGIKGIVNFTPG 96 (96)
T ss_dssp HHHHHTT-SEEEEESSS
T ss_pred HHHHHcCCCEEEEeCCC
Confidence 99999999999999986
No 9
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=99.76 E-value=3.2e-18 Score=148.65 Aligned_cols=112 Identities=21% Similarity=0.286 Sum_probs=98.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCC-----------CeEecCccccccHHHHHhccCCcEEEEeeC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKG-----------GTEHLGLPVFNSVAEAKAETKANASVIYVP 125 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~-----------G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVp 125 (182)
.+||+|.|++||||+.+++.+.+. +.+++ |+++.... |....|+||++++..... ++|++|||+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~-aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~--~~DV~IDFT~ 78 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELV-AAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKA--DADVLIDFTT 78 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEE-EEEecCCccccccchhhhccccccCceeecchhhccc--CCCEEEECCC
Confidence 478999999999999999999965 59999 98888754 213568999999766666 8999999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccchhc-chh
Q 030169 126 PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF-LNF 173 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~~-~~~ 173 (182)
|+.+.+++++|+++|+++||+ ||||+++|.++|.++|+++||=+ .||
T Consensus 79 P~~~~~~l~~~~~~~~~lVIG-TTGf~~e~~~~l~~~a~~v~vv~a~Nf 126 (266)
T COG0289 79 PEATLENLEFALEHGKPLVIG-TTGFTEEQLEKLREAAEKVPVVIAPNF 126 (266)
T ss_pred chhhHHHHHHHHHcCCCeEEE-CCCCCHHHHHHHHHHHhhCCEEEeccc
Confidence 999999999999999999999 99999999999999999998754 454
No 10
>PLN02775 Probable dihydrodipicolinate reductase
Probab=99.72 E-value=2.9e-17 Score=144.10 Aligned_cols=113 Identities=16% Similarity=0.158 Sum_probs=99.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEec------Ccccc--ccHHHHHhcc---CCc-EEEEeeC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHL------GLPVF--NSVAEAKAET---KAN-ASVIYVP 125 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~------GvPVy--~Sv~ea~~~~---~~D-vaVdfVp 125 (182)
.+||+|.|++||||+++++.+.+.++++| +.++++..|++.. ++|+| ++++++++.. .+| ++|||+.
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv-~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~ 89 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVSAGLQLV-PVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVVDYTL 89 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhcCCCEEE-EEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCEEEEECCC
Confidence 35899999999999999999888889999 9999988775433 79999 9999999655 799 9999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccchhc-chh
Q 030169 126 PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF-LNF 173 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~~-~~~ 173 (182)
|++++++++.|+++|+++|++ |||++++++.++.+ ++.+|+-. .||
T Consensus 90 P~a~~~~~~~~~~~g~~~VvG-TTG~~~e~l~~~~~-~~~i~vv~apNf 136 (286)
T PLN02775 90 PDAVNDNAELYCKNGLPFVMG-TTGGDRDRLLKDVE-ESGVYAVIAPQM 136 (286)
T ss_pred hHHHHHHHHHHHHCCCCEEEE-CCCCCHHHHHHHHh-cCCccEEEECcc
Confidence 999999999999999999999 99999999998877 56777654 454
No 11
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=99.68 E-value=1.8e-16 Score=138.46 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=95.8
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEee-ccCCCCCeE---ec--Cccc------cccHHHHHhccCCc-EEEEeeCh
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGG-VTPKKGGTE---HL--GLPV------FNSVAEAKAETKAN-ASVIYVPP 126 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~Ag-Vdp~~~G~~---i~--GvPV------y~Sv~ea~~~~~~D-vaVdfVpp 126 (182)
||+|.|++||||+++++.+.+.|+++| +. +++...+++ +. ++|| +.+++++.+. .+| ++|||+.|
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv-~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~-~~d~VvIDFT~P 79 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIV-PTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAK-YPELICIDYTHP 79 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEE-eeEccccccccchhhhcccceeeeccccccccHHHHHhh-cCCEEEEECCCh
Confidence 799999999999999999888889999 87 888765543 11 7999 9999998862 489 99999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch-hcchh
Q 030169 127 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV-AFLNF 173 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv-~~~~~ 173 (182)
+.++++++.|+++|+++|++ |||++++|+.+|.+.++ +|+ -+.||
T Consensus 80 ~~~~~n~~~~~~~gv~~ViG-TTG~~~~~~~~l~~~~~-i~~l~apNf 125 (275)
T TIGR02130 80 SAVNDNAAFYGKHGIPFVMG-TTGGDREALAKLVADAK-HPAVIAPNM 125 (275)
T ss_pred HHHHHHHHHHHHCCCCEEEc-CCCCCHHHHHHHHHhcC-CCEEEECcc
Confidence 99999999999999999999 99999999999999886 554 44566
No 12
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=99.67 E-value=3.2e-16 Score=134.83 Aligned_cols=111 Identities=22% Similarity=0.316 Sum_probs=95.4
Q ss_pred ceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCC---CCeE---e-----cCccccccHHHHHhccCCcEEEEeeCh
Q 030169 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKK---GGTE---H-----LGLPVFNSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~---~G~~---i-----~GvPVy~Sv~ea~~~~~~DvaVdfVpp 126 (182)
+||+|+|++|+||+.+++.+.+ .+++++ |.+|+.. .+++ . .|+|+|++++++. .++|++|||+||
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elv-av~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~--~~~DvVIdfT~p 78 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLV-AAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVE--TDPDVLIDFTTP 78 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEE-EEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhc--CCCCEEEECCCh
Confidence 5899999889999999998885 679999 9898322 1211 1 3699999999983 379999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc--cchhc-chh
Q 030169 127 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI--LLVAF-LNF 173 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~--ipv~~-~~~ 173 (182)
+.+.+.+++|+++|+++|++ |+|+++++..+|.++|++ +||-. .||
T Consensus 79 ~~~~~~~~~al~~g~~vVig-ttg~~~e~~~~l~~aA~~~g~~v~~a~Nf 127 (266)
T TIGR00036 79 EGVLNHLKFALEHGVRLVVG-TTGFSEEDKQELADLAEKAGIAAVIAPNF 127 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEE-CCCCCHHHHHHHHHHHhcCCccEEEECcc
Confidence 99999999999999999999 889999999999999999 88876 555
No 13
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=99.63 E-value=1.7e-15 Score=129.41 Aligned_cols=108 Identities=18% Similarity=0.219 Sum_probs=95.1
Q ss_pred ceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCCCCe---EecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKKGGT---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~~G~---~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
+||+|+|++|+||+.+++.+.+ .+++++ +.+|+..... +..++++|++++++++ ++|+++||+||+...++++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elv-av~d~~~~~~~~~~~~~i~~~~dl~~ll~--~~DvVid~t~p~~~~~~~~ 78 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELV-AAVDRPGSPLVGQGALGVAITDDLEAVLA--DADVLIDFTTPEATLENLE 78 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEE-EEEecCCccccccCCCCccccCCHHHhcc--CCCEEEECCCHHHHHHHHH
Confidence 6899999999999999998875 469999 8887765321 1246889999999987 7999999999999999999
Q ss_pred HHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccchhc
Q 030169 135 EAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF 170 (182)
Q Consensus 135 eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~~ 170 (182)
.|+++|+++|++ |+|++++|.++|.++++++||-.
T Consensus 79 ~al~~G~~vvig-ttG~s~~~~~~l~~aa~~~~v~~ 113 (257)
T PRK00048 79 FALEHGKPLVIG-TTGFTEEQLAELEEAAKKIPVVI 113 (257)
T ss_pred HHHHcCCCEEEE-CCCCCHHHHHHHHHHhcCCCEEE
Confidence 999999999999 99999999999999989998764
No 14
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=99.60 E-value=3.9e-15 Score=136.45 Aligned_cols=107 Identities=26% Similarity=0.306 Sum_probs=94.9
Q ss_pred eeecCCceEEEEccC---CCCchhhhHHHHHhCC--ceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChH
Q 030169 53 VFVDKNTRVICQGIT---GKNGTFHTEQAIEYGT--KMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 53 ~li~~~trViVvG~t---GkmG~~v~k~~~~~g~--~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
.+|+|.+ |+|+|++ |++|..+.++++++|+ +|+ +|||+. .++.|+|+|+|++|+++ .+|++++++|++
T Consensus 3 ~l~~p~s-iavvGaS~~~~~~g~~~~~~l~~~gf~g~v~--~Vnp~~--~~i~G~~~~~sl~~lp~--~~Dlavi~vp~~ 75 (447)
T TIGR02717 3 HLFNPKS-VAVIGASRDPGKVGYAIMKNLIEGGYKGKIY--PVNPKA--GEILGVKAYPSVLEIPD--PVDLAVIVVPAK 75 (447)
T ss_pred cccCCCE-EEEEccCCCCCchHHHHHHHHHhCCCCCcEE--EECCCC--CccCCccccCCHHHCCC--CCCEEEEecCHH
Confidence 4677755 9999998 7889999999999885 788 999997 36999999999999987 899999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHH------HHHHHHHhccc
Q 030169 128 FAAAAIMEAMEAELDLVVCITEGIPQHD------MVINFTRVNIL 166 (182)
Q Consensus 128 av~~a~~eAie~GIk~VV~iTeG~~~eD------~~~l~~~ak~i 166 (182)
.+.+++++|.+.|++.+|++|+||++.+ ..+|.+++++-
T Consensus 76 ~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~ 120 (447)
T TIGR02717 76 YVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKY 120 (447)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHc
Confidence 9999999999999999999999999854 47888888663
No 15
>PLN02522 ATP citrate (pro-S)-lyase
Probab=99.59 E-value=9.3e-15 Score=139.16 Aligned_cols=109 Identities=20% Similarity=0.332 Sum_probs=94.7
Q ss_pred eeecCCceEEEEccCCCCchhhhHHHHHhCC-------ceEEeeccCCC-------CCeEecCccccccHHHHHhcc-CC
Q 030169 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGT-------KMVVGGVTPKK-------GGTEHLGLPVFNSVAEAKAET-KA 117 (182)
Q Consensus 53 ~li~~~trViVvG~tGkmG~~v~k~~~~~g~-------~IV~AgVdp~~-------~G~~i~GvPVy~Sv~ea~~~~-~~ 117 (182)
.+++++||.+|+| |....++.|++|++ .+. |-|.|.. -|+++.|+|||+|++|+++++ ++
T Consensus 5 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~iPVf~tv~eA~~~~~~~ 79 (608)
T PLN02522 5 QLFSRTTQALFYN----YKQLPVQRMLDFDFLCGRETPSVA-GIINPGSEGFQKLFFGQEEIAIPVHGSIEAACKAHPTA 79 (608)
T ss_pred eeecCCceeEEEc----CcHHHHHhhhccceeccCCCCeeE-EEEcCCCCcceeEecCCEeeCccccchHHHHHHhCCCC
Confidence 5899999999999 78888999998872 244 5578855 244567999999999999887 89
Q ss_pred cEEEEeeChHHHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 118 NASVIYVPPPFAAAAIMEAMEA-ELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 118 DvaVdfVpp~av~~a~~eAie~-GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
|++++||||..++|.+.|++.. ||+.+|++|+|||+.|+.+|.+.|++-
T Consensus 80 ~~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~ 129 (608)
T PLN02522 80 DVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARAN 129 (608)
T ss_pred cEEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHc
Confidence 9999999999999998888874 999999999999999999999999764
No 16
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=99.51 E-value=6.4e-14 Score=111.76 Aligned_cols=107 Identities=18% Similarity=0.240 Sum_probs=98.1
Q ss_pred eecCCceEEEEccC---CCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 54 FVDKNTRVICQGIT---GKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 54 li~~~trViVvG~t---GkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
.+++..+|+|+|++ .|-+..+.+.|++.|.+|+ +|||+..|++++|.++|+|++|+++ ++|++.+|.+++.+.
T Consensus 12 iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~Vi--PVNP~~~~~eiLG~k~y~sL~dIpe--~IDiVdvFR~~e~~~ 87 (140)
T COG1832 12 ILKSAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVI--PVNPKLAGEEILGEKVYPSLADIPE--PIDIVDVFRRSEAAP 87 (140)
T ss_pred HHHhCceEEEEecCCCCCccHHHHHHHHHHCCCEEE--eeCcccchHHhcCchhhhcHHhCCC--CCcEEEEecChhhhH
Confidence 45556779999999 6677788999999999999 9999999999999999999999997 899999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 131 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 131 ~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
++++++++.|.+.+|. =.|+.-++..+..+.+..
T Consensus 88 ~i~~eal~~~~kv~W~-QlGi~n~ea~~~~~~aG~ 121 (140)
T COG1832 88 EVAREALEKGAKVVWL-QLGIRNEEAAEKARDAGL 121 (140)
T ss_pred HHHHHHHhhCCCeEEE-ecCcCCHHHHHHHHHhCc
Confidence 9999999999999998 899999998888888766
No 17
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=99.49 E-value=1.2e-13 Score=105.73 Aligned_cols=98 Identities=22% Similarity=0.236 Sum_probs=75.2
Q ss_pred eEEEEccC---CCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHH
Q 030169 60 RVICQGIT---GKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 60 rViVvG~t---GkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eA 136 (182)
+|+|+|++ ++.|..+.+.+++.|.+|+ +|+|+. +++.|+|+|+|++|.++ ++|++++++||..+.+++++|
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~~v~--~Vnp~~--~~i~G~~~y~sl~e~p~--~iDlavv~~~~~~~~~~v~~~ 75 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGYEVY--PVNPKG--GEILGIKCYPSLAEIPE--PIDLAVVCVPPDKVPEIVDEA 75 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT-EEE--EESTTC--SEETTEE-BSSGGGCSS--T-SEEEE-S-HHHHHHHHHHH
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCCEEE--EECCCc--eEECcEEeeccccCCCC--CCCEEEEEcCHHHHHHHHHHH
Confidence 69999998 8889999999999999999 999998 57999999999999545 899999999999999999999
Q ss_pred HHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 137 MEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 137 ie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
.+.|++.||. -.| .+..++.+++++-.
T Consensus 76 ~~~g~~~v~~-~~g---~~~~~~~~~a~~~g 102 (116)
T PF13380_consen 76 AALGVKAVWL-QPG---AESEELIEAAREAG 102 (116)
T ss_dssp HHHT-SEEEE--TT---S--HHHHHHHHHTT
T ss_pred HHcCCCEEEE-Ecc---hHHHHHHHHHHHcC
Confidence 9999999999 444 45555555555543
No 18
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=99.47 E-value=7.3e-14 Score=117.11 Aligned_cols=108 Identities=23% Similarity=0.329 Sum_probs=96.9
Q ss_pred eeecCCceEEEEccCCCCchhhhH--HHHHhCCceEEee--ccCCCCCeEecCcccccc--HHHHHhccCCcEEEEeeCh
Q 030169 53 VFVDKNTRVICQGITGKNGTFHTE--QAIEYGTKMVVGG--VTPKKGGTEHLGLPVFNS--VAEAKAETKANASVIYVPP 126 (182)
Q Consensus 53 ~li~~~trViVvG~tGkmG~~v~k--~~~~~g~~IV~Ag--Vdp~~~G~~i~GvPVy~S--v~ea~~~~~~DvaVdfVpp 126 (182)
+..++.++|+++|+ |++|+++.. .+.+++++|+ +. ++|.+.|+++.++|||+- +++.++++++|++++.||.
T Consensus 79 Lg~~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv-~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 79 LGQDKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIV-AAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred hCCCcceeEEEEcc-ChHHHHHhcCcchhhcCceEE-EEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 57889999999999 999999866 6668899999 74 899999999999999986 9999998899999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeC-------CCCCHHHHHHHHHH
Q 030169 127 PFAAAAIMEAMEAELDLVVCIT-------EGIPQHDMVINFTR 162 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iT-------eG~~~eD~~~l~~~ 162 (182)
..||++++..+++||+.|+++| +|+.+|.++.-.++
T Consensus 157 ~~AQ~vad~Lv~aGVkGIlNFtPv~l~~pe~V~V~~iDLt~eL 199 (211)
T COG2344 157 EHAQEVADRLVKAGVKGILNFTPVRLQVPEGVIVENIDLTAEL 199 (211)
T ss_pred HHHHHHHHHHHHcCCceEEeccceEecCCCCcEEEEeehHHHH
Confidence 9999999999999999999998 78888877665554
No 19
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=99.11 E-value=1.5e-10 Score=85.88 Aligned_cols=106 Identities=22% Similarity=0.269 Sum_probs=87.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCCCe----EecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKGGT----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G~----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
.||.|+|+ |.+|+.+.+.+.+. +++++ |.+|+..... +..|+|+|+|++|+++..++|++++.+|+....+.
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~~~~~~v~-~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~ 78 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRSSPDFEVV-AVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEI 78 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHTTTTEEEE-EEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHH
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCcEEE-EEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHH
Confidence 48999999 99999999877754 58888 8888875221 13589999999999987789999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+++|+++|+++++==--..+.+|..+|.+++++-
T Consensus 79 ~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 79 AKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp HHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 9999999995544322467999999999999653
No 20
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=98.96 E-value=1.6e-09 Score=103.59 Aligned_cols=97 Identities=26% Similarity=0.381 Sum_probs=87.3
Q ss_pred eeecCCceEEEEccC---CCCchhhhHHHHHhC-CceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH
Q 030169 53 VFVDKNTRVICQGIT---GKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 53 ~li~~~trViVvG~t---GkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
.++.|+. |+|+|++ ++.|+.+.++++++| ++|+ +|+|+.. ++.|+++|++++++++ .+|++++.||+..
T Consensus 6 ~~~~p~s-vavigas~~~~~vg~~i~~nL~~~g~g~i~--PVnp~~~--~v~G~~ay~s~~~lp~--~~dlav~~v~~~~ 78 (598)
T COG1042 6 RLFAPKS-IAVIGASERPGKLGYEILRNLLEYGQGKIY--PVNPKYD--EVLGVKAYTSVADLPD--APDLAVIVVPAKV 78 (598)
T ss_pred hhhCCce-EEEeeccCCcchhHHHHHHHHHhcCCCceE--ecCcccc--ccccccccchHhhCCC--CCCeeEEEechhh
Confidence 4677765 9999999 456778888999988 8999 9999994 6999999999999999 8999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHHH
Q 030169 129 AAAAIMEAMEAELDLVVCITEGIPQHDM 156 (182)
Q Consensus 129 v~~a~~eAie~GIk~VV~iTeG~~~eD~ 156 (182)
+.+++++|.+.|++.+|+++.||.+--.
T Consensus 79 ~~~i~~~~~~kGv~~~i~is~gf~e~~~ 106 (598)
T COG1042 79 VPEIVHELGEKGVKGAIVISAGFREAGE 106 (598)
T ss_pred hHHHHHHhhccCCceEEEechhhhHHhh
Confidence 9999999999999999999999987554
No 21
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.90 E-value=6.2e-09 Score=89.57 Aligned_cols=104 Identities=13% Similarity=0.044 Sum_probs=81.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCe----Ee-cCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGT----EH-LGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~----~i-~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
+||.|+|+ |+||+.+++.+.+. +.+++ +.+++..... .. .++++|++++++ ..++|++++++|+..+.+.
T Consensus 2 ~rVgIiG~-G~iG~~~~~~l~~~~~~~l~-~v~~~~~~~~~~~~~~~~~~~~~~d~~~l--~~~~DvVve~t~~~~~~e~ 77 (265)
T PRK13303 2 MKVAMIGF-GAIGAAVLELLEHDPDLRVD-WVIVPEHSIDAVRRALGEAVRVVSSVDAL--PQRPDLVVECAGHAALKEH 77 (265)
T ss_pred cEEEEECC-CHHHHHHHHHHhhCCCceEE-EEEEcCCCHHHHhhhhccCCeeeCCHHHh--ccCCCEEEECCCHHHHHHH
Confidence 58999999 99999999988865 58888 6654433211 11 268999999998 3479999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCC-CCH-HHHHHHHHHhcccc
Q 030169 133 IMEAMEAELDLVVCITEG-IPQ-HDMVINFTRVNILL 167 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG-~~~-eD~~~l~~~ak~ip 167 (182)
+.+++++|+++++. +.| +.. +...+|.++|++-.
T Consensus 78 ~~~aL~aGk~Vvi~-s~~Al~d~~~~~~L~~~A~~~g 113 (265)
T PRK13303 78 VVPILKAGIDCAVI-SVGALADEALRERLEQAAEAGG 113 (265)
T ss_pred HHHHHHcCCCEEEe-ChHHhcCHHHHHHHHHHHHHCC
Confidence 99999999999986 666 553 44577888886643
No 22
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.82 E-value=9.7e-09 Score=85.35 Aligned_cols=107 Identities=21% Similarity=0.294 Sum_probs=83.5
Q ss_pred eecCCceEEEEccCCCCchhhhHHH--HHhCCceEEeecc--CCCCCeEecCccccc--cHHHHHhccCCcEEEEeeChH
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQA--IEYGTKMVVGGVT--PKKGGTEHLGLPVFN--SVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~--~~~g~~IV~AgVd--p~~~G~~i~GvPVy~--Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
..+...+|+|+|+ |.+|+.+.+.. .+.|++++ |-+| |.+.|..+.|+||++ +++++++++++|++++.+|..
T Consensus 80 ~~~~~~rV~IIGa-G~iG~~l~~~~~~~~~g~~iv-gv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 80 GLDRTWNVALVGA-GNLGRALLNYNGFEKRGFKIV-AAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred CCCCCcEEEEECC-CHHHHHHHHhhhcccCCcEEE-EEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCch
Confidence 3445678999999 99999998853 25679999 7665 456666677888874 477777777899999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeC-------CCCCHHHHHHHHHH
Q 030169 128 FAAAAIMEAMEAELDLVVCIT-------EGIPQHDMVINFTR 162 (182)
Q Consensus 128 av~~a~~eAie~GIk~VV~iT-------eG~~~eD~~~l~~~ 162 (182)
...++++.++++|++.|++++ +|+.+++.....++
T Consensus 158 ~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l 199 (213)
T PRK05472 158 AAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVEL 199 (213)
T ss_pred hHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHH
Confidence 999999999999999999975 56655555444444
No 23
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.74 E-value=3.6e-08 Score=84.74 Aligned_cols=103 Identities=10% Similarity=0.081 Sum_probs=83.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCCCe----EecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKGGT----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G~----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
+||.|+|+ |+||+.+++.+.+. +.+++ +.+|+...-- +..+.++|.+++|+++ ++|++++.+|+....+.
T Consensus 2 mrIgIIG~-G~iG~~ia~~l~~~~~~~elv-~v~d~~~~~a~~~a~~~~~~~~~~~~ell~--~~DvVvi~a~~~~~~~~ 77 (265)
T PRK13304 2 LKIGIVGC-GAIASLITKAILSGRINAELY-AFYDRNLEKAENLASKTGAKACLSIDELVE--DVDLVVECASVNAVEEV 77 (265)
T ss_pred CEEEEECc-cHHHHHHHHHHHcCCCCeEEE-EEECCCHHHHHHHHHhcCCeeECCHHHHhc--CCCEEEEcCChHHHHHH
Confidence 58999998 99999999988764 57888 7777764210 1236889999999885 89999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCC--CHHHHHHHHHHhccc
Q 030169 133 IMEAMEAELDLVVCITEGI--PQHDMVINFTRVNIL 166 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~--~~eD~~~l~~~ak~i 166 (182)
+++++++|.++++. +.|- ..+...+|.++|++-
T Consensus 78 ~~~al~~Gk~Vvv~-s~gAl~d~~~~~~L~~aA~~~ 112 (265)
T PRK13304 78 VPKSLENGKDVIIM-SVGALADKELFLKLYKLAKEN 112 (265)
T ss_pred HHHHHHcCCCEEEE-chHHhcCHHHHHHHHHHHHHc
Confidence 99999999887775 6653 677788999998764
No 24
>PRK11579 putative oxidoreductase; Provisional
Probab=98.74 E-value=3.9e-08 Score=86.46 Aligned_cols=107 Identities=15% Similarity=0.065 Sum_probs=84.9
Q ss_pred CCceEEEEccCCCCch-hhhHHHHH-hCCceEEeeccCCCC--CeEecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 57 KNTRVICQGITGKNGT-FHTEQAIE-YGTKMVVGGVTPKKG--GTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 57 ~~trViVvG~tGkmG~-~v~k~~~~-~g~~IV~AgVdp~~~--G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
+..||.|+|+ |.+|+ .+.+.+.. .+.+++ |-.|+... .....+.++|++++|+++..++|++++.+|+....+.
T Consensus 3 ~~irvgiiG~-G~i~~~~~~~~~~~~~~~~l~-av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~ 80 (346)
T PRK11579 3 DKIRVGLIGY-GYASKTFHAPLIAGTPGLELA-AVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPL 80 (346)
T ss_pred CcceEEEECC-CHHHHHHHHHHHhhCCCCEEE-EEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHH
Confidence 3479999999 99998 46676654 468898 77776531 1123467899999999987789999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+.+|+++|+++++==-=..+.+|..+|.++|++
T Consensus 81 ~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~ 113 (346)
T PRK11579 81 AKAALEAGKHVVVDKPFTVTLSQARELDALAKS 113 (346)
T ss_pred HHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999998876432334788999999999965
No 25
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=98.61 E-value=7.3e-08 Score=82.78 Aligned_cols=109 Identities=19% Similarity=0.210 Sum_probs=85.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCCCCe----EecCcc-ccccHHHHHhccCCcEEEEeeChHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKGGT----EHLGLP-VFNSVAEAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~G~----~i~GvP-Vy~Sv~ea~~~~~~DvaVdfVpp~av 129 (182)
+..||.|+|+.|.+++.+...+.+.+ ++++ |.+|+....- +..++| +|.|++++++..++|+++|.+|+...
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~v-av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H 80 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELV-AVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH 80 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEE-EEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh
Confidence 45799999995466677888888765 5888 8777766321 124675 99999999997779999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 130 AAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 130 ~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
.+.+..|+++|+++++==-=..+.+|.++|.++|++-
T Consensus 81 ~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~ 117 (342)
T COG0673 81 AELALAALEAGKHVLCEKPLALTLEEAEELVELARKA 117 (342)
T ss_pred HHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 9999999999997763111237899999999999764
No 26
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.55 E-value=2.3e-07 Score=80.25 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=79.3
Q ss_pred CceEEEEccCCCCchhhhHHHHH--hCCceEEeeccCCCCCe-E---ecC-ccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIE--YGTKMVVGGVTPKKGGT-E---HLG-LPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~--~g~~IV~AgVdp~~~G~-~---i~G-vPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
.+||.|+|+ |++|+.+++.+.+ .+.+++ +-.++..... + ..| .++|.+++|+.+ ++|++++.+|+....
T Consensus 6 ~irIGIIG~-G~IG~~~a~~L~~~~~~~el~-aV~dr~~~~a~~~a~~~g~~~~~~~~eell~--~~D~Vvi~tp~~~h~ 81 (271)
T PRK13302 6 ELRVAIAGL-GAIGKAIAQALDRGLPGLTLS-AVAVRDPQRHADFIWGLRRPPPVVPLDQLAT--HADIVVEAAPASVLR 81 (271)
T ss_pred eeEEEEECc-cHHHHHHHHHHHhcCCCeEEE-EEECCCHHHHHHHHHhcCCCcccCCHHHHhc--CCCEEEECCCcHHHH
Confidence 378999999 9999999998875 468887 6666643111 1 123 468999999987 799999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 131 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 131 ~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+.++.++++|+++++. +.| ...+..+|.+++++
T Consensus 82 e~~~~aL~aGk~Vi~~-s~g-al~~~~~L~~~A~~ 114 (271)
T PRK13302 82 AIVEPVLAAGKKAIVL-SVG-ALLRNEDLIDLARQ 114 (271)
T ss_pred HHHHHHHHcCCcEEEe-cch-hHHhHHHHHHHHHH
Confidence 9999999999887764 544 33467788888765
No 27
>PRK10206 putative oxidoreductase; Provisional
Probab=98.52 E-value=4.3e-07 Score=80.51 Aligned_cols=106 Identities=10% Similarity=0.019 Sum_probs=81.6
Q ss_pred ceEEEEccCCCCc-hhhhHHHHH--hCCceEEeeccCCCC----CeEecCccccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 59 TRVICQGITGKNG-TFHTEQAIE--YGTKMVVGGVTPKKG----GTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViVvG~tGkmG-~~v~k~~~~--~g~~IV~AgVdp~~~----G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
.||.|+|+ |.++ +.+...+.. .+.+++ |-.|+... .+...++++|++.+|+++..++|++++.+|+....+
T Consensus 2 irvgiiG~-G~~~~~~h~~~~~~~~~~~~l~-av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~ 79 (344)
T PRK10206 2 INCAFIGF-GKSTTRYHLPYVLNRKDSWHVA-HIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFE 79 (344)
T ss_pred eEEEEECC-CHHHhheehhhHhcCCCCEEEE-EEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHH
Confidence 48999999 8865 456665543 358898 77776431 112335889999999998778999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 132 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 132 a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
.+.+|+++|+++++==-=..+.+|..+|.++|++-
T Consensus 80 ~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 114 (344)
T PRK10206 80 YAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSK 114 (344)
T ss_pred HHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHh
Confidence 99999999977654212257899999999999653
No 28
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=98.40 E-value=7.1e-07 Score=79.73 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=68.2
Q ss_pred ceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCCC---------CeE-------------ecCccccccHHHHHhcc
Q 030169 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKKG---------GTE-------------HLGLPVFNSVAEAKAET 115 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~~---------G~~-------------i~GvPVy~Sv~ea~~~~ 115 (182)
.||+|.|+ |+||+.+++.+.+ .+++++ |..++... |-. ..+++++.+.+++.+
T Consensus 2 ikVaI~G~-GrIGr~va~al~~~~d~eLv-av~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~-- 77 (341)
T PRK04207 2 IKVGVNGY-GTIGKRVADAVAAQPDMELV-GVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE-- 77 (341)
T ss_pred eEEEEECC-CHHHHHHHHHHhcCCCcEEE-EEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc--
Confidence 58999999 9999999998774 569999 87764321 100 136889999998886
Q ss_pred CCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 116 KANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 116 ~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
++|++++|+|+....+.+..++++|+++|+.
T Consensus 78 ~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~ 108 (341)
T PRK04207 78 KADIVVDATPGGVGAKNKELYEKAGVKAIFQ 108 (341)
T ss_pred cCCEEEECCCchhhHHHHHHHHHCCCEEEEc
Confidence 7999999999999999999999999666655
No 29
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.37 E-value=8.9e-07 Score=79.37 Aligned_cols=109 Identities=10% Similarity=0.046 Sum_probs=83.0
Q ss_pred CceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCCCCeEecCcccccc--HHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKKGGTEHLGLPVFNS--VAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~~G~~i~GvPVy~S--v~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
..||+|+|+ |++|+.+.+.+.+ .+++++ |.+++...+..-.++++|.+ .+++.. ++|++++.+|.....+.+.
T Consensus 3 kIRVgIVG~-GnIGr~~a~al~~~pd~ELV-gV~dr~~~~~~~~~~~v~~~~d~~e~l~--~iDVViIctPs~th~~~~~ 78 (324)
T TIGR01921 3 KIRAAIVGY-GNLGRSVEKAIQQQPDMELV-GVFSRRGAETLDTETPVYAVADDEKHLD--DVDVLILCMGSATDIPEQA 78 (324)
T ss_pred CcEEEEEee-cHHHHHHHHHHHhCCCcEEE-EEEcCCcHHHHhhcCCccccCCHHHhcc--CCCEEEEcCCCccCHHHHH
Confidence 479999999 9999999998875 479999 77777642211124566653 555444 7999999999999999999
Q ss_pred HHHHcCCCEEEEeCCCCC-HHHHHHHHHHhcc-cchhc
Q 030169 135 EAMEAELDLVVCITEGIP-QHDMVINFTRVNI-LLVAF 170 (182)
Q Consensus 135 eAie~GIk~VV~iTeG~~-~eD~~~l~~~ak~-ipv~~ 170 (182)
.++++|+++|...-.+.. .+..++|.++||+ .-++.
T Consensus 79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsv 116 (324)
T TIGR01921 79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSV 116 (324)
T ss_pred HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence 999999999987655553 5778899999985 34443
No 30
>PRK06270 homoserine dehydrogenase; Provisional
Probab=98.35 E-value=1e-06 Score=78.44 Aligned_cols=107 Identities=19% Similarity=0.080 Sum_probs=79.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHh----------CCceEEeeccCCC-----CCeE----------ecCcccc------cc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY----------GTKMVVGGVTPKK-----GGTE----------HLGLPVF------NS 107 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~----------g~~IV~AgVdp~~-----~G~~----------i~GvPVy------~S 107 (182)
.||+|+|+ |.+|+.+++.+.+. +++|+ |.+|+.. .|-. ...++.| .+
T Consensus 3 i~V~IiG~-G~VG~~~~~~L~~~~~~~~~~~g~~~~vv-ai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (341)
T PRK06270 3 MKIALIGF-GGVGQGVAELLAEKREYLKKRYGLDLKVV-AIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS 80 (341)
T ss_pred EEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEE-EEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence 68999998 99999999987643 57888 7777531 1210 1123444 37
Q ss_pred HHHHHhccCCcEEEEeeChHH-----HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 108 VAEAKAETKANASVIYVPPPF-----AAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 108 v~ea~~~~~~DvaVdfVpp~a-----v~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
++|+++..++|++++.+|+.. +.+.+.+|+++|+++|.. +++.-..+..+|.++|++--+
T Consensus 81 ~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVta-NK~pla~~~~eL~~~A~~~g~ 145 (341)
T PRK06270 81 GLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTS-NKGPLALAYKELKELAKKNGV 145 (341)
T ss_pred HHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcC-CcHHHHhhHHHHHHHHHHcCC
Confidence 899887678999999998643 589999999999988776 666666677889999977544
No 31
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=98.27 E-value=2.4e-06 Score=76.89 Aligned_cols=102 Identities=13% Similarity=0.169 Sum_probs=79.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCCCe----EecCccccccHHHHHhccCCcEEEEee----Ch
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKGGT----EHLGLPVFNSVAEAKAETKANASVIYV----PP 126 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G~----~i~GvPVy~Sv~ea~~~~~~DvaVdfV----pp 126 (182)
+..||+|+|+ .+|+.+++.+.+. +++++ |-+|+...-- +..|+|.|.+++|+++ ++|+.++++ |+
T Consensus 2 ~~~rVgViG~--~~G~~h~~al~~~~~~~eLv-aV~d~~~erA~~~A~~~gi~~y~~~eell~--d~Di~~V~ipt~~P~ 76 (343)
T TIGR01761 2 DVQSVVVCGT--RFGQFYLAAFAAAPERFELA-GILAQGSERSRALAHRLGVPLYCEVEELPD--DIDIACVVVRSAIVG 76 (343)
T ss_pred CCcEEEEEeH--HHHHHHHHHHHhCCCCcEEE-EEEcCCHHHHHHHHHHhCCCccCCHHHHhc--CCCEEEEEeCCCCCC
Confidence 3578999998 4899999887753 58999 8788764211 1248999999999997 677777776 45
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 127 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
....+.+.+|+++|+++++ =.=+..+|.++|.++|++
T Consensus 77 ~~H~e~a~~aL~aGkHVL~--EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 77 GQGSALARALLARGIHVLQ--EHPLHPRDIQDLLRLAER 113 (343)
T ss_pred ccHHHHHHHHHhCCCeEEE--cCCCCHHHHHHHHHHHHH
Confidence 7889999999999977653 333457999999999966
No 32
>PRK08374 homoserine dehydrogenase; Provisional
Probab=98.24 E-value=2.9e-06 Score=75.65 Aligned_cols=104 Identities=21% Similarity=0.128 Sum_probs=72.8
Q ss_pred ceEEEEccCCCCchhhhHHHHH--------hC--CceEEeeccCCC-----CCeEe----------cCcccc-------c
Q 030169 59 TRVICQGITGKNGTFHTEQAIE--------YG--TKMVVGGVTPKK-----GGTEH----------LGLPVF-------N 106 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~--------~g--~~IV~AgVdp~~-----~G~~i----------~GvPVy-------~ 106 (182)
.+|+|+|+ |.-|+.+++.+.+ +| ++|+ +-.|... .|-+. ..+.-| +
T Consensus 3 i~VaIiG~-GnVG~~~~~~L~~~~~~l~~~~G~~l~Vv-aV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (336)
T PRK08374 3 VKVSIFGF-GNVGRAVAEVLAEKSRVFKERYGVELKVV-SITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN 80 (336)
T ss_pred eEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEE-EEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence 68999999 9999998887765 56 6677 5444321 11000 011112 1
Q ss_pred -cHHHHHhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 107 -SVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 107 -Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+.+|+++..++|++|+++++..+.+....++++|+++|.+ +.|.--+...+|.++|++
T Consensus 81 ~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVta-nK~~la~~~~el~~la~~ 139 (336)
T PRK08374 81 FSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVTS-NKPPIAFHYDELLDLANE 139 (336)
T ss_pred CCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEEC-CHHHHHhCHHHHHHHHHH
Confidence 6778776568999999999999999999999999999988 777333444566666544
No 33
>PRK06091 membrane protein FdrA; Validated
Probab=98.15 E-value=7.5e-06 Score=78.00 Aligned_cols=65 Identities=22% Similarity=0.209 Sum_probs=57.8
Q ss_pred CccccccHHHHHhcc-CCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 101 GLPVFNSVAEAKAET-KANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 101 GvPVy~Sv~ea~~~~-~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
.+|.|+++.++.+.. ++|++++++|+..+.+++++|+++|. .++++|+||+.+++.+|.++|++-
T Consensus 101 ~~~~~~t~~~a~~~lpe~DLAvIsVPa~~v~~al~ea~~~G~-~viI~S~gfg~~~E~~L~e~Ar~~ 166 (555)
T PRK06091 101 SLTQVRRWDSACQKLPDANLALISVAGEYAAELAEQALDRNL-NVMMFSDNVTLEDEIRLKTRAREK 166 (555)
T ss_pred CCcccccHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHcCC-eEEEEcCCCCHHHHHHHHHHHHHc
Confidence 588999999988654 57999999999999999999999995 566779999999999999999653
No 34
>PRK06349 homoserine dehydrogenase; Provisional
Probab=98.07 E-value=1.3e-05 Score=73.57 Aligned_cols=108 Identities=15% Similarity=0.059 Sum_probs=80.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHh----------CCceEEeeccCCCCC---eEecCccccccHHHHHhccCCcEEEEee
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY----------GTKMVVGGVTPKKGG---TEHLGLPVFNSVAEAKAETKANASVIYV 124 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~----------g~~IV~AgVdp~~~G---~~i~GvPVy~Sv~ea~~~~~~DvaVdfV 124 (182)
..||.|+|+ |.+|+.+++.+.+. +++++ +-+++...- ....+..++++.+++++..++|++++.+
T Consensus 3 ~i~VgiiG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~l~-~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~t 80 (426)
T PRK06349 3 PLKVGLLGL-GTVGSGVVRILEENAEEIAARAGRPIEIK-KVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELM 80 (426)
T ss_pred eEEEEEEee-CHHHHHHHHHHHHhHHHHHHhcCCCEEEE-EEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECC
Confidence 478999998 99999988766432 46777 655543211 1123567889999998766899999998
Q ss_pred Ch-HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 125 PP-PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 125 pp-~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
++ ..+.+.+.+|+++|+++|.. -.....++..+|.++|++--+
T Consensus 81 g~~~~~~~~~~~aL~~GkhVVta-NK~~~a~~~~eL~~lA~~~gv 124 (426)
T PRK06349 81 GGIEPARELILKALEAGKHVVTA-NKALLAVHGAELFAAAEEKGV 124 (426)
T ss_pred CCchHHHHHHHHHHHCCCeEEEc-CHHHHHHHHHHHHHHHHHcCC
Confidence 65 67799999999999887753 345566788999999977544
No 35
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=98.00 E-value=2e-06 Score=64.54 Aligned_cols=99 Identities=15% Similarity=0.023 Sum_probs=73.8
Q ss_pred ccCCCCchhhhHHHHHh----CCceEEeeccCCCCCe------EecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 65 GITGKNGTFHTEQAIEY----GTKMVVGGVTPKKGGT------EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 65 G~tGkmG~~v~k~~~~~----g~~IV~AgVdp~~~G~------~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
|+ |.+|+.+++.+.+. +++++ +-.+.. ..- ...+.+++.+++++++..++|++|+.++++.+.+...
T Consensus 1 G~-G~VG~~l~~~l~~~~~~~~~~v~-~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~ 77 (117)
T PF03447_consen 1 GF-GNVGRGLLEQLKEQQERIDLEVV-GVADRS-MLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYYE 77 (117)
T ss_dssp ---SHHHHHHHHHHHHTHHHCEEEEE-EEEESS-EEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHhCcccCCEEEE-EEEECC-chhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHHH
Confidence 55 99999999988853 67888 666665 110 1236788899999988668999999999999999999
Q ss_pred HHHHcCCCEEEEeCCCC--CHHHHHHHHHHhcccc
Q 030169 135 EAMEAELDLVVCITEGI--PQHDMVINFTRVNILL 167 (182)
Q Consensus 135 eAie~GIk~VV~iTeG~--~~eD~~~l~~~ak~ip 167 (182)
.++++|+++|.. ..|- +.....+|.++|++--
T Consensus 78 ~~L~~G~~VVt~-nk~ala~~~~~~~L~~~A~~~g 111 (117)
T PF03447_consen 78 KALERGKHVVTA-NKGALADEALYEELREAARKNG 111 (117)
T ss_dssp HHHHTTCEEEES--HHHHHSHHHHHHHHHHHHHHT
T ss_pred HHHHCCCeEEEE-CHHHhhhHHHHHHHHHHHHHcC
Confidence 999999999986 5333 3377788888887644
No 36
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=98.00 E-value=2.1e-05 Score=79.69 Aligned_cols=113 Identities=12% Similarity=0.126 Sum_probs=83.6
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHh-CCc-------------eEEeeccCCCCCeE---ecC---ccc-cccHHHHHhc
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEY-GTK-------------MVVGGVTPKKGGTE---HLG---LPV-FNSVAEAKAE 114 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~-g~~-------------IV~AgVdp~~~G~~---i~G---vPV-y~Sv~ea~~~ 114 (182)
.+..||+|+|+ |++|+.+++.+.+. +.+ +.||..++.....- ..+ +++ +.+.+++.+.
T Consensus 567 ~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~ 645 (1042)
T PLN02819 567 KKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKY 645 (1042)
T ss_pred ccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHh
Confidence 34568999999 99999999988754 344 33344444331110 113 566 7777776542
Q ss_pred -cCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccchhcch
Q 030169 115 -TKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAFLN 172 (182)
Q Consensus 115 -~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~~~~ 172 (182)
.++|++|..+|+....++++.|+++|++.+. +....+++.+|.+.|++--|.+.|
T Consensus 646 v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~---eky~~~e~~~L~e~Ak~AGV~~m~ 701 (1042)
T PLN02819 646 VSQVDVVISLLPASCHAVVAKACIELKKHLVT---ASYVSEEMSALDSKAKEAGITILC 701 (1042)
T ss_pred hcCCCEEEECCCchhhHHHHHHHHHcCCCEEE---CcCCHHHHHHHHHHHHHcCCEEEE
Confidence 2699999999999999999999999998754 348899999999999887776665
No 37
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.99 E-value=5.7e-05 Score=64.49 Aligned_cols=96 Identities=21% Similarity=0.216 Sum_probs=74.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC----CceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG----TKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g----~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
++||.|+|+ |.||..+.+.+.+.+ -+++ +.++.... .++....+..++.+ ++|++++.+||....+++
T Consensus 3 ~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~--~~~~~~~~---~~~~~~~~~~~~~~--~~D~Vilavkp~~~~~vl 74 (260)
T PTZ00431 3 NIRVGFIGL-GKMGSALAYGIENSNIIGKENIY--YHTPSKKN---TPFVYLQSNEELAK--TCDIIVLAVKPDLAGKVL 74 (260)
T ss_pred CCEEEEECc-cHHHHHHHHHHHhCCCCCcceEE--EECCChhc---CCeEEeCChHHHHH--hCCEEEEEeCHHHHHHHH
Confidence 478999998 999999999988765 2366 66765422 23445567777776 789999999999999999
Q ss_pred HHHHHc-CCCEEEEeCCCCCHHHHHHHHH
Q 030169 134 MEAMEA-ELDLVVCITEGIPQHDMVINFT 161 (182)
Q Consensus 134 ~eAie~-GIk~VV~iTeG~~~eD~~~l~~ 161 (182)
.+.... +-+.||.+..|++.+++.++..
T Consensus 75 ~~i~~~l~~~~iIS~~aGi~~~~l~~~~~ 103 (260)
T PTZ00431 75 LEIKPYLGSKLLISICGGLNLKTLEEMVG 103 (260)
T ss_pred HHHHhhccCCEEEEEeCCccHHHHHHHcC
Confidence 987643 2357788899999998888754
No 38
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.96 E-value=9.6e-06 Score=64.49 Aligned_cols=102 Identities=16% Similarity=0.168 Sum_probs=71.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-E--ecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-E--HLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~ 134 (182)
+||.++|. |+||+.+++.+.+.|.++. +.|+....- + ..|..+.+|++|+.+ .+|+++..+|... +.+++.
T Consensus 2 ~~Ig~IGl-G~mG~~~a~~L~~~g~~v~--~~d~~~~~~~~~~~~g~~~~~s~~e~~~--~~dvvi~~v~~~~~v~~v~~ 76 (163)
T PF03446_consen 2 MKIGFIGL-GNMGSAMARNLAKAGYEVT--VYDRSPEKAEALAEAGAEVADSPAEAAE--QADVVILCVPDDDAVEAVLF 76 (163)
T ss_dssp BEEEEE---SHHHHHHHHHHHHTTTEEE--EEESSHHHHHHHHHTTEEEESSHHHHHH--HBSEEEE-SSSHHHHHHHHH
T ss_pred CEEEEEch-HHHHHHHHHHHHhcCCeEE--eeccchhhhhhhHHhhhhhhhhhhhHhh--cccceEeecccchhhhhhhh
Confidence 68999999 9999999999999999988 566543111 1 147999999999999 6899999999854 556655
Q ss_pred H--HHHc-CCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 135 E--AMEA-ELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 135 e--Aie~-GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
. .+.+ .-..+++-++-.+.++..++.+..+.
T Consensus 77 ~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~ 110 (163)
T PF03446_consen 77 GENILAGLRPGKIIIDMSTISPETSRELAERLAA 110 (163)
T ss_dssp CTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHH
T ss_pred hhHHhhccccceEEEecCCcchhhhhhhhhhhhh
Confidence 5 4543 34555555888888888888887653
No 39
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=97.95 E-value=2.2e-05 Score=69.80 Aligned_cols=97 Identities=18% Similarity=0.172 Sum_probs=69.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC-eE--ecCccccccHHHHHhccCCcEEEEeeChH-HHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG-TE--HLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G-~~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a~ 133 (182)
.++|.|+|+ |+||+.+++.+.+.|.+++ .+.++.... .. ..|+.+. +.+|+.+ ++|++++.+||. ......
T Consensus 3 ~kkIgiIG~-G~mG~AiA~~L~~sG~~Vi-v~~~~~~~~~~~a~~~Gv~~~-s~~ea~~--~ADiVvLaVpp~~~~~~v~ 77 (314)
T TIGR00465 3 GKTVAIIGY-GSQGHAQALNLRDSGLNVI-VGLRKGGASWKKATEDGFKVG-TVEEAIP--QADLIMNLLPDEVQHEVYE 77 (314)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCCCeEE-EEECcChhhHHHHHHCCCEEC-CHHHHHh--cCCEEEEeCCcHhHHHHHH
Confidence 467999998 9999999999999998877 566654311 01 2367665 4788777 799999999999 444433
Q ss_pred HHHHHc-CCCEEEEeCCCCCHHHHHHH
Q 030169 134 MEAMEA-ELDLVVCITEGIPQHDMVIN 159 (182)
Q Consensus 134 ~eAie~-GIk~VV~iTeG~~~eD~~~l 159 (182)
.+.... .-..+|.+..||+.++....
T Consensus 78 ~ei~~~l~~g~iVs~aaG~~i~~~~~~ 104 (314)
T TIGR00465 78 AEIQPLLKEGKTLGFSHGFNIHFVQIV 104 (314)
T ss_pred HHHHhhCCCCcEEEEeCCccHhhcccc
Confidence 334332 11247888999999987653
No 40
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.95 E-value=2.9e-05 Score=65.50 Aligned_cols=97 Identities=18% Similarity=0.201 Sum_probs=74.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC---CceEEeeccCCCCCeE----ecCccccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG---TKMVVGGVTPKKGGTE----HLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g---~~IV~AgVdp~~~G~~----i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
++|.|+|+ |.||+.++..+.+.| .++. .+++.....+ ..|+.+.++.+++.+ ++|++++.+||....+
T Consensus 3 m~I~iIG~-G~mG~~la~~l~~~g~~~~~v~--v~~r~~~~~~~~~~~~g~~~~~~~~~~~~--~advVil~v~~~~~~~ 77 (267)
T PRK11880 3 KKIGFIGG-GNMASAIIGGLLASGVPAKDII--VSDPSPEKRAALAEEYGVRAATDNQEAAQ--EADVVVLAVKPQVMEE 77 (267)
T ss_pred CEEEEEec-hHHHHHHHHHHHhCCCCcceEE--EEcCCHHHHHHHHHhcCCeecCChHHHHh--cCCEEEEEcCHHHHHH
Confidence 57999998 999999999988776 4454 6666531111 126778888888877 7999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Q 030169 132 AIMEAMEAELDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 132 a~~eAie~GIk~VV~iTeG~~~eD~~~l~ 160 (182)
+++++....-+.|+-++.|++.+++.++.
T Consensus 78 v~~~l~~~~~~~vvs~~~gi~~~~l~~~~ 106 (267)
T PRK11880 78 VLSELKGQLDKLVVSIAAGVTLARLERLL 106 (267)
T ss_pred HHHHHHhhcCCEEEEecCCCCHHHHHHhc
Confidence 99887654225777789999988777654
No 41
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.94 E-value=2.5e-05 Score=67.62 Aligned_cols=98 Identities=14% Similarity=0.206 Sum_probs=75.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCC----ceEEeeccCCCCCeE----ecCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGT----KMVVGGVTPKKGGTE----HLGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~----~IV~AgVdp~~~G~~----i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
+||.++|+ |+||..+++.+.+.|. +|+ +.|+....-+ ..|+.++++.+|+.+ ++|++++.+||..+.
T Consensus 3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~--v~~r~~~~~~~l~~~~g~~~~~~~~e~~~--~aDiIiLavkP~~~~ 77 (272)
T PRK12491 3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQII--CSDLNVSNLKNASDKYGITITTNNNEVAN--SADILILSIKPDLYS 77 (272)
T ss_pred CeEEEECc-cHHHHHHHHHHHHCCCCCCceEE--EECCCHHHHHHHHHhcCcEEeCCcHHHHh--hCCEEEEEeChHHHH
Confidence 47999998 9999999999988763 466 6666442111 136777788888877 799999999999999
Q ss_pred HHHHHHHHc--CCCEEEEeCCCCCHHHHHHHHH
Q 030169 131 AAIMEAMEA--ELDLVVCITEGIPQHDMVINFT 161 (182)
Q Consensus 131 ~a~~eAie~--GIk~VV~iTeG~~~eD~~~l~~ 161 (182)
+++++.... +=+.||=+..|++.+++.++..
T Consensus 78 ~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~ 110 (272)
T PRK12491 78 SVINQIKDQIKNDVIVVTIAAGKSIKSTENEFD 110 (272)
T ss_pred HHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcC
Confidence 998876532 2357888899999999998763
No 42
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.94 E-value=3.2e-05 Score=65.20 Aligned_cols=98 Identities=18% Similarity=0.217 Sum_probs=74.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCC----ceEEeec-cCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGT----KMVVGGV-TPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~----~IV~AgV-dp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
+||.++|+ |.||..+++.+.+.|. +|+ .. ++...-.+ ..|+.+.++..|+.+ ++|++++.+||..+.
T Consensus 1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~--v~~~r~~~~~~~~~~~g~~~~~~~~e~~~--~aDvVil~v~~~~~~ 75 (266)
T PLN02688 1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRIS--TADDSNPARRDVFQSLGVKTAASNTEVVK--SSDVIILAVKPQVVK 75 (266)
T ss_pred CeEEEECC-cHHHHHHHHHHHHCCCCCcceEE--EEeCCCHHHHHHHHHcCCEEeCChHHHHh--cCCEEEEEECcHHHH
Confidence 57999997 9999999999998876 777 44 55432111 137888889988887 789999999999999
Q ss_pred HHHHHHHHc--CCCEEEEeCCCCCHHHHHHHHH
Q 030169 131 AAIMEAMEA--ELDLVVCITEGIPQHDMVINFT 161 (182)
Q Consensus 131 ~a~~eAie~--GIk~VV~iTeG~~~eD~~~l~~ 161 (182)
+++.+.... .=+.||-++.|++.+++.++..
T Consensus 76 ~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~ 108 (266)
T PLN02688 76 DVLTELRPLLSKDKLLVSVAAGITLADLQEWAG 108 (266)
T ss_pred HHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcC
Confidence 998776543 1245666689999998886653
No 43
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.93 E-value=5.5e-05 Score=62.83 Aligned_cols=99 Identities=13% Similarity=0.184 Sum_probs=73.5
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC---Cc-eEEeeccCCC--CCeE---ecCccccccHHHHHhccCCcEEEEeeChH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG---TK-MVVGGVTPKK--GGTE---HLGLPVFNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g---~~-IV~AgVdp~~--~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
+.+||.|+|+ |+||+.+++.+.+.+ .+ ++ .+++.. ..+. ..++.++.+.+++++ ++|++++.+|+.
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~DiViiavp~~ 77 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEII--VSNRSNVEKLDQLQARYNVSTTTDWKQHVT--SVDTIVLAMPPS 77 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEE--EECCCCHHHHHHHHHHcCcEEeCChHHHHh--cCCEEEEecCHH
Confidence 3578999998 999999999887655 33 54 344321 0111 136778889999887 799999999999
Q ss_pred HHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHH
Q 030169 128 FAAAAIMEAMEA-ELDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 128 av~~a~~eAie~-GIk~VV~iTeG~~~eD~~~l~ 160 (182)
...+++++.... .-+.||.++.|++.+++.+..
T Consensus 78 ~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~~~ 111 (245)
T PRK07634 78 AHEELLAELSPLLSNQLVVTVAAGIGPSYLEERL 111 (245)
T ss_pred HHHHHHHHHHhhccCCEEEEECCCCCHHHHHHHc
Confidence 999998876532 225788889999999877654
No 44
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.92 E-value=1.8e-05 Score=60.12 Aligned_cols=92 Identities=17% Similarity=0.202 Sum_probs=65.7
Q ss_pred eEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCC-CCeEec-Ccc---------ccccHHHHHhccCCcEEEEeeChH
Q 030169 60 RVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKK-GGTEHL-GLP---------VFNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~-~G~~i~-GvP---------Vy~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
||.|+|+||..|+.+.+.+.+. .++++ .-+.... .|+.+. ..| +-+.-.+..+ ++|+++..+|..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Dvvf~a~~~~ 77 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELV-ALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELS--DVDVVFLALPHG 77 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEE-EEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHT--TESEEEE-SCHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEE-EeeeeccccCCeeehhccccccccceeEeecchhHhh--cCCEEEecCchh
Confidence 7999999999999999988864 48888 6566555 565432 223 2221122234 799999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHH
Q 030169 128 FAAAAIMEAMEAELDLVVCITEGIPQHD 155 (182)
Q Consensus 128 av~~a~~eAie~GIk~VV~iTeG~~~eD 155 (182)
...+.+..+++.|+++ |=.+.-+..++
T Consensus 78 ~~~~~~~~~~~~g~~V-iD~s~~~R~~~ 104 (121)
T PF01118_consen 78 ASKELAPKLLKAGIKV-IDLSGDFRLDD 104 (121)
T ss_dssp HHHHHHHHHHHTTSEE-EESSSTTTTST
T ss_pred HHHHHHHHHhhCCcEE-EeCCHHHhCCC
Confidence 9999999999999944 44466665544
No 45
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.90 E-value=6.5e-05 Score=64.77 Aligned_cols=96 Identities=18% Similarity=0.239 Sum_probs=72.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC----CceEEeeccCCCCCe------EecCccccccHHHHHhccCCcEEEEeeChHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG----TKMVVGGVTPKKGGT------EHLGLPVFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g----~~IV~AgVdp~~~G~------~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
+||.|+|+ |.||+.+++.+.+.| .+|+ ++++..... ...++.+..+.+++.+ ++|++++.+||..
T Consensus 2 ~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~--~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~--~aDvVilavpp~~ 76 (277)
T PRK06928 2 EKIGFIGY-GSMADMIATKLLETEVATPEEII--LYSSSKNEHFNQLYDKYPTVELADNEAEIFT--KCDHSFICVPPLA 76 (277)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcccEE--EEeCCcHHHHHHHHHHcCCeEEeCCHHHHHh--hCCEEEEecCHHH
Confidence 46999998 999999999988776 4677 555532110 0123556678888777 7999999999999
Q ss_pred HHHHHHHHHH---cCCCEEEEeCCCCCHHHHHHHH
Q 030169 129 AAAAIMEAME---AELDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 129 v~~a~~eAie---~GIk~VV~iTeG~~~eD~~~l~ 160 (182)
+.+++.+... .+ +.||.++.|++.+++.++.
T Consensus 77 ~~~vl~~l~~~l~~~-~~ivS~~aGi~~~~l~~~~ 110 (277)
T PRK06928 77 VLPLLKDCAPVLTPD-RHVVSIAAGVSLDDLLEIT 110 (277)
T ss_pred HHHHHHHHHhhcCCC-CEEEEECCCCCHHHHHHHc
Confidence 9999987754 34 3567779999999988865
No 46
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.88 E-value=8.9e-05 Score=63.60 Aligned_cols=98 Identities=14% Similarity=0.153 Sum_probs=73.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC----CceEEeeccCCCCCe--E---ecCccccccHHHHHhccCCcEEEEeeChHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG----TKMVVGGVTPKKGGT--E---HLGLPVFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g----~~IV~AgVdp~~~G~--~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
.+||.++|+ |+||+.+++.+.+.| .+|+ ..++..... . ..|+.+.++..|+.+ ++|++++.+||..
T Consensus 3 ~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~--v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~--~aDvVilav~p~~ 77 (279)
T PRK07679 3 IQNISFLGA-GSIAEAIIGGLLHANVVKGEQIT--VSNRSNETRLQELHQKYGVKGTHNKKELLT--DANILFLAMKPKD 77 (279)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcceEE--EECCCCHHHHHHHHHhcCceEeCCHHHHHh--cCCEEEEEeCHHH
Confidence 368999997 999999999998776 5566 455532111 1 126777888888877 7899999999999
Q ss_pred HHHHHHHHHHc--CCCEEEEeCCCCCHHHHHHHH
Q 030169 129 AAAAIMEAMEA--ELDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 129 v~~a~~eAie~--GIk~VV~iTeG~~~eD~~~l~ 160 (182)
..+++.+.... .=+.||-+..|++.+++.++.
T Consensus 78 ~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~ 111 (279)
T PRK07679 78 VAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLL 111 (279)
T ss_pred HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHc
Confidence 99998776543 124566667999999888865
No 47
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=97.88 E-value=4.8e-05 Score=68.36 Aligned_cols=95 Identities=25% Similarity=0.318 Sum_probs=71.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe---EecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~---~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
.++|.|+|+ |+||+.+++.+.+.|.+++ .+..+..... +..|+.+. +++|+.+ ++|++++.+|+....+++.
T Consensus 17 gktIgIIG~-GsmG~AlA~~L~~sG~~Vv-v~~r~~~~s~~~A~~~G~~~~-s~~eaa~--~ADVVvLaVPd~~~~~V~~ 91 (330)
T PRK05479 17 GKKVAIIGY-GSQGHAHALNLRDSGVDVV-VGLREGSKSWKKAEADGFEVL-TVAEAAK--WADVIMILLPDEVQAEVYE 91 (330)
T ss_pred CCEEEEEee-HHHHHHHHHHHHHCCCEEE-EEECCchhhHHHHHHCCCeeC-CHHHHHh--cCCEEEEcCCHHHHHHHHH
Confidence 467999999 9999999999999999988 5544322111 12367666 8899888 7999999999999888874
Q ss_pred HHHHcCC--CEEEEeCCCCCHHHHH
Q 030169 135 EAMEAEL--DLVVCITEGIPQHDMV 157 (182)
Q Consensus 135 eAie~GI--k~VV~iTeG~~~eD~~ 157 (182)
+.+...+ ..++.++.|++.+...
T Consensus 92 ~~I~~~Lk~g~iL~~a~G~~i~~~~ 116 (330)
T PRK05479 92 EEIEPNLKEGAALAFAHGFNIHFGQ 116 (330)
T ss_pred HHHHhcCCCCCEEEECCCCChhhce
Confidence 4443333 3456789999998864
No 48
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=97.87 E-value=1.3e-05 Score=65.98 Aligned_cols=93 Identities=23% Similarity=0.358 Sum_probs=67.4
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe---EecCccccccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~---~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
++.+|+|+|+ |++|+.++.+|.+.|.+++ -|..++.... +..|+.|+ +++|+.+ +.|++++.+|-....++.
T Consensus 3 ~~k~IAViGy-GsQG~a~AlNLrDSG~~V~-Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~--~aDvV~~L~PD~~q~~vy 77 (165)
T PF07991_consen 3 KGKTIAVIGY-GSQGHAHALNLRDSGVNVI-VGLREGSASWEKAKADGFEVM-SVAEAVK--KADVVMLLLPDEVQPEVY 77 (165)
T ss_dssp CTSEEEEES--SHHHHHHHHHHHHCC-EEE-EEE-TTCHHHHHHHHTT-ECC-EHHHHHH--C-SEEEE-S-HHHHHHHH
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCCCCEE-EEecCCCcCHHHHHHCCCeec-cHHHHHh--hCCEEEEeCChHHHHHHH
Confidence 4578999999 9999999999999999998 5555544111 13588887 7888888 799999999999999998
Q ss_pred HHHHHcCCC--EEEEeCCCCCHH
Q 030169 134 MEAMEAELD--LVVCITEGIPQH 154 (182)
Q Consensus 134 ~eAie~GIk--~VV~iTeG~~~e 154 (182)
++-++-..+ .+++++-||..+
T Consensus 78 ~~~I~p~l~~G~~L~fahGfni~ 100 (165)
T PF07991_consen 78 EEEIAPNLKPGATLVFAHGFNIH 100 (165)
T ss_dssp HHHHHHHS-TT-EEEESSSHHHH
T ss_pred HHHHHhhCCCCCEEEeCCcchhh
Confidence 888876544 478889998875
No 49
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.86 E-value=3e-05 Score=68.99 Aligned_cols=87 Identities=15% Similarity=0.099 Sum_probs=69.2
Q ss_pred CceEEEEccCCCCchhhhHHHHH-hCCceEEeec--cCCCCCe---EecCccc-cccHHHHHhc---cCCcEEEEeeChH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIE-YGTKMVVGGV--TPKKGGT---EHLGLPV-FNSVAEAKAE---TKANASVIYVPPP 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgV--dp~~~G~---~i~GvPV-y~Sv~ea~~~---~~~DvaVdfVpp~ 127 (182)
..||.|+| +|+.|+.+...+.+ .+++++ +-+ ||...|. ...|+|. |++++++++. .++|++++.+|+.
T Consensus 4 klrVAIIG-tG~IGt~hm~~l~~~~~velv-AVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~ 81 (302)
T PRK08300 4 KLKVAIIG-SGNIGTDLMIKILRSEHLEPG-AMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG 81 (302)
T ss_pred CCeEEEEc-CcHHHHHHHHHHhcCCCcEEE-EEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH
Confidence 57899999 59999998776664 458887 654 5543331 2358998 5889999875 4799999999999
Q ss_pred HHHHHHHHHHHcCCCEEEE
Q 030169 128 FAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 128 av~~a~~eAie~GIk~VV~ 146 (182)
...+.+..+.++|+++|-.
T Consensus 82 ~H~e~a~~a~eaGk~VID~ 100 (302)
T PRK08300 82 AHVRHAAKLREAGIRAIDL 100 (302)
T ss_pred HHHHHHHHHHHcCCeEEEC
Confidence 9999999999999888755
No 50
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.85 E-value=3.3e-05 Score=68.91 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=69.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeEec----Ccc-----ccccHHHHHhccCCcEEEEeeChHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTEHL----GLP-----VFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~i~----GvP-----Vy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
+||+|+|++|.+|+.+++.+.+. +.+++ +-.++...|+.+. .++ .|.++++. ...++|++++.+|...
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv-~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~-~~~~vD~Vf~alP~~~ 80 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIV-AVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPE-ILAGADVVFLALPHGV 80 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEE-EEECccccCcchHHhCcccccccCceeecCCHH-HhcCCCEEEECCCcHH
Confidence 68999999999999999988865 68888 7676544443221 122 45555543 2237999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHH
Q 030169 129 AAAAIMEAMEAELDLVVCITEGIPQHD 155 (182)
Q Consensus 129 v~~a~~eAie~GIk~VV~iTeG~~~eD 155 (182)
..+.+.+++++|+++|=. +..|..++
T Consensus 81 ~~~~v~~a~~aG~~VID~-S~~fR~~~ 106 (343)
T PRK00436 81 SMDLAPQLLEAGVKVIDL-SADFRLKD 106 (343)
T ss_pred HHHHHHHHHhCCCEEEEC-CcccCCCC
Confidence 999999999999766654 66666654
No 51
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=97.85 E-value=4e-05 Score=69.20 Aligned_cols=95 Identities=24% Similarity=0.316 Sum_probs=72.1
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--EecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
+..+|.|+|. |+||+.+++++...|++|+ ++.++.+... ...|+.++ +++|+.+ ..|++++.+|-+...++..
T Consensus 15 kgKtVGIIG~-GsIG~amA~nL~d~G~~Vi-V~~r~~~s~~~A~~~G~~v~-sl~Eaak--~ADVV~llLPd~~t~~V~~ 89 (335)
T PRK13403 15 QGKTVAVIGY-GSQGHAQAQNLRDSGVEVV-VGVRPGKSFEVAKADGFEVM-SVSEAVR--TAQVVQMLLPDEQQAHVYK 89 (335)
T ss_pred CcCEEEEEeE-cHHHHHHHHHHHHCcCEEE-EEECcchhhHHHHHcCCEEC-CHHHHHh--cCCEEEEeCCChHHHHHHH
Confidence 3467999999 9999999999999999998 6656543211 12367665 8999999 8999999999877767765
Q ss_pred HHHHcCC--CEEEEeCCCCCHHHH
Q 030169 135 EAMEAEL--DLVVCITEGIPQHDM 156 (182)
Q Consensus 135 eAie~GI--k~VV~iTeG~~~eD~ 156 (182)
+.+.... ..+++++-||..|--
T Consensus 90 ~eil~~MK~GaiL~f~hgfni~~~ 113 (335)
T PRK13403 90 AEVEENLREGQMLLFSHGFNIHFG 113 (335)
T ss_pred HHHHhcCCCCCEEEECCCcceecC
Confidence 5444443 358888999988643
No 52
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.83 E-value=3.9e-05 Score=67.61 Aligned_cols=86 Identities=19% Similarity=0.108 Sum_probs=66.9
Q ss_pred ceEEEEccCCCCchhhhHHHH-HhCCceEEeec--cCCCCCe---EecCcccc-ccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAI-EYGTKMVVGGV--TPKKGGT---EHLGLPVF-NSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~-~~g~~IV~AgV--dp~~~G~---~i~GvPVy-~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
.||.|+|+ |++|+.+...++ ..+++++ +-+ ||...+. +..|+|.+ ++.+++++..++|++++.+|+....+
T Consensus 2 lrVAIIG~-G~IG~~h~~~ll~~~~~elv-aV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e 79 (285)
T TIGR03215 2 VKVAIIGS-GNIGTDLMYKLLRSEHLEMV-AMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHAR 79 (285)
T ss_pred cEEEEEeC-cHHHHHHHHHHHhCCCcEEE-EEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHH
Confidence 58999997 999999976665 4567887 655 4443231 23588865 57899887668999999999999999
Q ss_pred HHHHHHHcCCCEEEE
Q 030169 132 AIMEAMEAELDLVVC 146 (182)
Q Consensus 132 a~~eAie~GIk~VV~ 146 (182)
.+..|+++|++++.-
T Consensus 80 ~a~~al~aGk~VIde 94 (285)
T TIGR03215 80 HARLLAELGKIVIDL 94 (285)
T ss_pred HHHHHHHcCCEEEEC
Confidence 999999999887543
No 53
>PRK07680 late competence protein ComER; Validated
Probab=97.80 E-value=0.00011 Score=62.69 Aligned_cols=97 Identities=18% Similarity=0.192 Sum_probs=72.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCC----ceEEeeccCCCCCe-----EecCccccccHHHHHhccCCcEEEEeeChHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGT----KMVVGGVTPKKGGT-----EHLGLPVFNSVAEAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~----~IV~AgVdp~~~G~-----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av 129 (182)
++|.|+|+ |.||+.+++.+.+.|. +|. ..++..... ...|+.+..+..++.+ ++|++++.+||..+
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~--v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--~aDiVilav~p~~~ 75 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLT--ITNRTPAKAYHIKERYPGIHVAKTIEEVIS--QSDLIFICVKPLDI 75 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEE--EECCCHHHHHHHHHHcCCeEEECCHHHHHH--hCCEEEEecCHHHH
Confidence 36999997 9999999999888772 344 566643110 1126778888888877 79999999999999
Q ss_pred HHHHHHHHHc--CCCEEEEeCCCCCHHHHHHHH
Q 030169 130 AAAIMEAMEA--ELDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 130 ~~a~~eAie~--GIk~VV~iTeG~~~eD~~~l~ 160 (182)
.+++++.... .=+.|+-++.|++.+++..+.
T Consensus 76 ~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~ 108 (273)
T PRK07680 76 YPLLQKLAPHLTDEHCLVSITSPISVEQLETLV 108 (273)
T ss_pred HHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHc
Confidence 9998875432 124677778999887777654
No 54
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.76 E-value=3.6e-05 Score=55.21 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=55.4
Q ss_pred eEEEEccCCCCchhhhHHHHHhC---CceEEeeccCCCCCe----EecCccccc-cHHHHHhccCCcEEEEeeChHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYG---TKMVVGGVTPKKGGT----EHLGLPVFN-SVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g---~~IV~AgVdp~~~G~----~i~GvPVy~-Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
||.++|+ |+||+.+.+.+.+.| .+|. -..++..... +..++.++. +..|+.+ +.|++++.+||....+
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~advvilav~p~~~~~ 76 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVI-IVSSRSPEKAAELAKEYGVQATADDNEEAAQ--EADVVILAVKPQQLPE 76 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEE-EEEESSHHHHHHHHHHCTTEEESEEHHHHHH--HTSEEEE-S-GGGHHH
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEE-eeccCcHHHHHHHHHhhccccccCChHHhhc--cCCEEEEEECHHHHHH
Confidence 6889998 999999999999988 7777 2324443111 123556677 7999888 7999999999999999
Q ss_pred HHHHH
Q 030169 132 AIMEA 136 (182)
Q Consensus 132 a~~eA 136 (182)
++.+.
T Consensus 77 v~~~i 81 (96)
T PF03807_consen 77 VLSEI 81 (96)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99988
No 55
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.71 E-value=0.00019 Score=63.09 Aligned_cols=104 Identities=10% Similarity=0.072 Sum_probs=77.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHh---CCceEEeeccCCC--CCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVVGGVTPKK--GGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~---g~~IV~AgVdp~~--~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
+||.|+|+ |.+|+.+++.+... +++++ +-.++.. ........|+++++++++.. ++|++|-.-++.++.+..
T Consensus 3 ~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~-~V~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~DlVVE~A~~~av~e~~ 79 (267)
T PRK13301 3 HRIAFIGL-GAIASDVAAGLLADAAQPCQLA-ALTRNAADLPPALAGRVALLDGLPGLLAW-RPDLVVEAAGQQAIAEHA 79 (267)
T ss_pred eEEEEECc-cHHHHHHHHHHhcCCCCceEEE-EEecCCHHHHHHhhccCcccCCHHHHhhc-CCCEEEECCCHHHHHHHH
Confidence 68999999 99999999987643 26777 4333321 00012248999999997532 799999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHH-HHHHHHHHhcc
Q 030169 134 MEAMEAELDLVVCITEGIPQH-DMVINFTRVNI 165 (182)
Q Consensus 134 ~eAie~GIk~VV~iTeG~~~e-D~~~l~~~ak~ 165 (182)
+..+++|+.+++.-..-+..+ -.++|.++|++
T Consensus 80 ~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 80 EGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred HHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 999999999999844555543 35567777743
No 56
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.71 E-value=9.7e-05 Score=64.17 Aligned_cols=103 Identities=19% Similarity=0.221 Sum_probs=72.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhcc-CCcEEEEeeChH-HHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAET-KANASVIYVPPP-FAAAAI 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~-~~DvaVdfVpp~-av~~a~ 133 (182)
++|.++|. |+||+.+++.+.+.|.+|+ ..|+...-.+ ..|..++++++|+.++. .+|++++.+|+. .+.+++
T Consensus 1 m~Ig~IGl-G~mG~~mA~~L~~~g~~v~--v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~ 77 (299)
T PRK12490 1 MKLGLIGL-GKMGGNMAERLREDGHEVV--GYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI 77 (299)
T ss_pred CEEEEEcc-cHHHHHHHHHHHhCCCEEE--EEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH
Confidence 47999998 9999999999999998888 5665431101 13788899999988742 379999999998 777777
Q ss_pred HHHHHcC-C-CEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 134 MEAMEAE-L-DLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 134 ~eAie~G-I-k~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
++....- - +.+|. ++..+..+..++.+..+.
T Consensus 78 ~~i~~~l~~g~ivid-~st~~~~~~~~~~~~~~~ 110 (299)
T PRK12490 78 KDLYPLLSPGDIVVD-GGNSRYKDDLRRAEELAE 110 (299)
T ss_pred HHHhccCCCCCEEEE-CCCCCchhHHHHHHHHHH
Confidence 6554331 1 24555 666666666666666543
No 57
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.70 E-value=0.00011 Score=63.68 Aligned_cols=104 Identities=18% Similarity=0.157 Sum_probs=71.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhcc-CCcEEEEeeChH-HHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAET-KANASVIYVPPP-FAAAAI 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~-~~DvaVdfVpp~-av~~a~ 133 (182)
+||.++|. |.||+.+++.+.+.|.+++ ..|+...-.+ ..|+.++++++|+.+.. ++|++++.+|+. .+.+++
T Consensus 1 m~Ig~IGl-G~MG~~mA~~L~~~g~~v~--v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~ 77 (301)
T PRK09599 1 MQLGMIGL-GRMGGNMARRLLRGGHEVV--GYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI 77 (301)
T ss_pred CEEEEEcc-cHHHHHHHHHHHHCCCeEE--EEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH
Confidence 47999998 9999999999999998888 5565431111 13788899999988743 479999999987 666666
Q ss_pred HHHHHc--CCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 134 MEAMEA--ELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+..... .=+.+|..+++-+ ++..++.+.+++-
T Consensus 78 ~~l~~~l~~g~ivid~st~~~-~~~~~~~~~~~~~ 111 (301)
T PRK09599 78 DELAPLLSPGDIVIDGGNSYY-KDDIRRAELLAEK 111 (301)
T ss_pred HHHHhhCCCCCEEEeCCCCCh-hHHHHHHHHHHHc
Confidence 555443 1145666455554 4555555555443
No 58
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.70 E-value=0.00017 Score=62.89 Aligned_cols=87 Identities=18% Similarity=0.161 Sum_probs=65.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAi 137 (182)
.+||.|+|+ |.||+.+++.+.+.|.+|. ..++... .+++++.+ +.|++++.+|.....++++...
T Consensus 4 ~m~I~iiG~-G~~G~~lA~~l~~~G~~V~--~~~r~~~----------~~~~~~~~--~advvi~~vp~~~~~~v~~~l~ 68 (308)
T PRK14619 4 PKTIAILGA-GAWGSTLAGLASANGHRVR--VWSRRSG----------LSLAAVLA--DADVIVSAVSMKGVRPVAEQVQ 68 (308)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCEEE--EEeCCCC----------CCHHHHHh--cCCEEEEECChHHHHHHHHHHH
Confidence 478999999 9999999999999998887 5555432 46788887 7999999999998888876654
Q ss_pred HcCC---CEEEEeCCCCCHHHHHHH
Q 030169 138 EAEL---DLVVCITEGIPQHDMVIN 159 (182)
Q Consensus 138 e~GI---k~VV~iTeG~~~eD~~~l 159 (182)
...+ ..|+..|.|+.++....+
T Consensus 69 ~~~~~~~~ivi~~s~gi~~~~~~~~ 93 (308)
T PRK14619 69 ALNLPPETIIVTATKGLDPETTRTP 93 (308)
T ss_pred HhcCCCCcEEEEeCCcccCCCCcCH
Confidence 4222 345665778877654433
No 59
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.69 E-value=9e-05 Score=64.76 Aligned_cols=99 Identities=20% Similarity=0.131 Sum_probs=68.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC-----------CeEecC------ccccccHHHHHhccCCcEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG-----------GTEHLG------LPVFNSVAEAKAETKANAS 120 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~-----------G~~i~G------vPVy~Sv~ea~~~~~~Dva 120 (182)
.+||.|+|+ |.||..++..+.+.|.+|. .+++... +..+.| +...++.+|+.+ ++|++
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~~G~~V~--~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~--~aD~V 78 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAASKGVPVR--LWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALA--GADFA 78 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCCeEE--EEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHc--CCCEE
Confidence 468999999 9999999999998887777 5555321 000113 445667888777 79999
Q ss_pred EEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHH--HHHHHHHh
Q 030169 121 VIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHD--MVINFTRV 163 (182)
Q Consensus 121 VdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD--~~~l~~~a 163 (182)
++.+|+..+.+++.. +..+. .++.+++|+..++ ..++.+..
T Consensus 79 i~~v~~~~~~~v~~~-l~~~~-~vi~~~~Gi~~~~~~~~~l~~~l 121 (328)
T PRK14618 79 VVAVPSKALRETLAG-LPRAL-GYVSCAKGLAPDGGRLSELARVL 121 (328)
T ss_pred EEECchHHHHHHHHh-cCcCC-EEEEEeeccccCCCccchHHHHH
Confidence 999999988777644 33444 4555589987554 44554443
No 60
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.68 E-value=0.00015 Score=61.41 Aligned_cols=100 Identities=6% Similarity=0.009 Sum_probs=72.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCce--EEeeccCCCCC-eE----ecCccccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKM--VVGGVTPKKGG-TE----HLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~I--V~AgVdp~~~G-~~----i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
+||.|+|+ |+||+.+++.+.+.|.++ + ...++...- ++ ..++.++++..|+.+ ++|++++.+||....+
T Consensus 1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i-~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~--~aDvVilav~p~~~~~ 76 (258)
T PRK06476 1 MKIGFIGT-GAITEAMVTGLLTSPADVSEI-IVSPRNAQIAARLAERFPKVRIAKDNQAVVD--RSDVVFLAVRPQIAEE 76 (258)
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCChheE-EEECCCHHHHHHHHHHcCCceEeCCHHHHHH--hCCEEEEEeCHHHHHH
Confidence 37999998 999999999988766332 2 234443211 01 225778899999887 7899999999999988
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Q 030169 132 AIMEAMEAELDLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 132 a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ 162 (182)
++.+.--..=+.||.+..|++.+++.++...
T Consensus 77 vl~~l~~~~~~~vis~~ag~~~~~l~~~~~~ 107 (258)
T PRK06476 77 VLRALRFRPGQTVISVIAATDRAALLEWIGH 107 (258)
T ss_pred HHHHhccCCCCEEEEECCCCCHHHHHHHhCC
Confidence 8876421122467777899999999988754
No 61
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.59 E-value=0.00027 Score=64.14 Aligned_cols=110 Identities=13% Similarity=0.081 Sum_probs=88.4
Q ss_pred CCceEEEEccCCCCchhhhHHHH---HhCCceEEeeccCCCCCe----Eec---CccccccHHHHHhccCCcEEEEeeCh
Q 030169 57 KNTRVICQGITGKNGTFHTEQAI---EYGTKMVVGGVTPKKGGT----EHL---GLPVFNSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~---~~g~~IV~AgVdp~~~G~----~i~---GvPVy~Sv~ea~~~~~~DvaVdfVpp 126 (182)
+..|+-|+|+ |++++..++.+. +.+..|+ |-.+|...-- +-+ ..++|+|.||+.+..++|++.+-+|.
T Consensus 5 ~~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Iv-ava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 5 ATIRWGIVGA-GRIARDFVRALHTLPESNHQIV-AVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred ceeEEEEeeh-hHHHHHHHHHhccCcccCcEEE-EEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCC
Confidence 4578889999 999999988666 3368899 8888843110 012 35899999999997788999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 127 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
...++++..|+++|.++.+==--..++.|.++|.++|+.--|
T Consensus 83 ~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv 124 (351)
T KOG2741|consen 83 PQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGV 124 (351)
T ss_pred ccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCc
Confidence 999999999999999965433356899999999999987654
No 62
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.59 E-value=0.00027 Score=60.58 Aligned_cols=102 Identities=12% Similarity=0.089 Sum_probs=70.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChHHHHH-HH-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAA-AI- 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~-a~- 133 (182)
+||.|+|+ |.||+.+++.+.+.|.+++ +.|+...-.+ ..|+.+.++.+|+.+ ++|++++.+|...... ++
T Consensus 3 ~~IgviG~-G~mG~~~a~~l~~~g~~v~--~~d~~~~~~~~~~~~g~~~~~~~~e~~~--~~d~vi~~vp~~~~~~~v~~ 77 (296)
T PRK11559 3 MKVGFIGL-GIMGKPMSKNLLKAGYSLV--VYDRNPEAVAEVIAAGAETASTAKAVAE--QCDVIITMLPNSPHVKEVAL 77 (296)
T ss_pred ceEEEEcc-CHHHHHHHHHHHHCCCeEE--EEcCCHHHHHHHHHCCCeecCCHHHHHh--cCCEEEEeCCCHHHHHHHHc
Confidence 47999998 9999999999999998887 5666532111 136778889999888 7999999999665433 33
Q ss_pred --HHHHHc-CCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 134 --MEAMEA-ELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 134 --~eAie~-GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+..+.. .-..+++-++.++.....++.+..+.
T Consensus 78 ~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~ 112 (296)
T PRK11559 78 GENGIIEGAKPGTVVIDMSSIAPLASREIAAALKA 112 (296)
T ss_pred CcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 222322 12233333666777777777776644
No 63
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.59 E-value=0.00015 Score=56.83 Aligned_cols=85 Identities=25% Similarity=0.180 Sum_probs=61.1
Q ss_pred EEEEccCCCCchhhhHHHHHhCCceEEeeccCCC-----CCeEe--cCccccccHHHHHhccCCcEEEEeeC-----hHH
Q 030169 61 VICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK-----GGTEH--LGLPVFNSVAEAKAETKANASVIYVP-----PPF 128 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~-----~G~~i--~GvPVy~Sv~ea~~~~~~DvaVdfVp-----p~a 128 (182)
|+|.|+||..|+.+++.+++.|.+|+ +.+-... .+-++ .++-=.+++.++++ ++|+++..++ ...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~-~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~--~~d~vi~~~~~~~~~~~~ 77 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVT-ALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALK--GADAVIHAAGPPPKDVDA 77 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEE-EEESSGGGHHHCTTEEEEESCTTCHHHHHHHHT--TSSEEEECCHSTTTHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEE-EEecCchhcccccccccceeeehhhhhhhhhhh--hcchhhhhhhhhcccccc
Confidence 78999999999999999999999999 6443222 11111 12222234677777 8999999998 455
Q ss_pred HHHHHHHHHHcCCCEEEEeC
Q 030169 129 AAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 129 v~~a~~eAie~GIk~VV~iT 148 (182)
+..+++.+.++|++.+|.++
T Consensus 78 ~~~~~~a~~~~~~~~~v~~s 97 (183)
T PF13460_consen 78 AKNIIEAAKKAGVKRVVYLS 97 (183)
T ss_dssp HHHHHHHHHHTTSSEEEEEE
T ss_pred cccccccccccccccceeee
Confidence 66777777788999887655
No 64
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.58 E-value=0.0002 Score=62.33 Aligned_cols=101 Identities=13% Similarity=0.113 Sum_probs=70.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhc-cCCcEEEEeeChHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAE-TKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~-~~~DvaVdfVpp~av~~a~~ 134 (182)
++|.|+|. |+||..++..+.+.|.+|+ +.|+...--+ -.+...+.+++++.+. ..+|++++.+|+..+.++++
T Consensus 1 M~Ig~IGl-G~mG~~la~~L~~~g~~V~--~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~ 77 (298)
T TIGR00872 1 MQLGLIGL-GRMGANIVRRLAKRGHDCV--GYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLE 77 (298)
T ss_pred CEEEEEcc-hHHHHHHHHHHHHCCCEEE--EEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHH
Confidence 47999998 9999999999999998888 4665531100 1256677888887653 26899999999998888887
Q ss_pred HHHHc---CCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 135 EAMEA---ELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 135 eAie~---GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
+.... | +.||..+++.+.+-.....++.
T Consensus 78 ~l~~~l~~g-~ivid~st~~~~~t~~~~~~~~ 108 (298)
T TIGR00872 78 ELAPTLEKG-DIVIDGGNSYYKDSLRRYKLLK 108 (298)
T ss_pred HHHhhCCCC-CEEEECCCCCcccHHHHHHHHH
Confidence 76543 3 4566655665554444444443
No 65
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.52 E-value=0.00045 Score=60.09 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=78.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCCCeE----ecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKGGTE----HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G~~----i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
++|.++|| |..|+.+++.+.+. +++++ +--|....--. -.+-+...++.|.++ ++|+++-.-.++++.+.
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v-~v~D~~~ek~~~~~~~~~~~~~s~ide~~~--~~DlvVEaAS~~Av~e~ 76 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRVDFELV-AVYDRDEEKAKELEASVGRRCVSDIDELIA--EVDLVVEAASPEAVREY 76 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCCcceeEE-EEecCCHHHHHHHHhhcCCCccccHHHHhh--ccceeeeeCCHHHHHHH
Confidence 36899999 99999999988854 48888 66555442111 114444488999987 89999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHH-HHHHHHhcc
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDM-VINFTRVNI 165 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~-~~l~~~ak~ 165 (182)
+.+++++|++.+|.-+--+.+++. +++.+++|.
T Consensus 77 ~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~ 110 (255)
T COG1712 77 VPKILKAGIDVIVMSVGALADEGLRERLRELAKC 110 (255)
T ss_pred hHHHHhcCCCEEEEechhccChHHHHHHHHHHhc
Confidence 999999999999985555665544 446667764
No 66
>PLN02256 arogenate dehydrogenase
Probab=97.52 E-value=0.00016 Score=63.91 Aligned_cols=76 Identities=12% Similarity=0.235 Sum_probs=60.1
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--EecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
+.++|.|+|+ |.||+.+++.+.+.|.+|+ ++++..... ...|+..+.+.+++.. .++|++++.+|+....+++.
T Consensus 35 ~~~kI~IIG~-G~mG~slA~~L~~~G~~V~--~~d~~~~~~~a~~~gv~~~~~~~e~~~-~~aDvVilavp~~~~~~vl~ 110 (304)
T PLN02256 35 RKLKIGIVGF-GNFGQFLAKTFVKQGHTVL--ATSRSDYSDIAAELGVSFFRDPDDFCE-EHPDVVLLCTSILSTEAVLR 110 (304)
T ss_pred CCCEEEEEee-CHHHHHHHHHHHhCCCEEE--EEECccHHHHHHHcCCeeeCCHHHHhh-CCCCEEEEecCHHHHHHHHH
Confidence 4568999997 9999999999998888888 777765211 1136777888888753 15899999999999988888
Q ss_pred HH
Q 030169 135 EA 136 (182)
Q Consensus 135 eA 136 (182)
+.
T Consensus 111 ~l 112 (304)
T PLN02256 111 SL 112 (304)
T ss_pred hh
Confidence 76
No 67
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.50 E-value=0.00039 Score=60.94 Aligned_cols=98 Identities=14% Similarity=0.187 Sum_probs=75.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC----CceEEeeccCCCCCeE----ecCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG----TKMVVGGVTPKKGGTE----HLGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g----~~IV~AgVdp~~~G~~----i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
+||.++|+ |+||+.+...+++.| .+|+ -.+|...-.. ..|+.+.++..++.+ +.|++++.|.|....
T Consensus 2 ~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~--v~~~~~e~~~~l~~~~g~~~~~~~~~~~~--~advv~LavKPq~~~ 76 (266)
T COG0345 2 MKIGFIGA-GNMGEAILSGLLKSGALPPEEII--VTNRSEEKRAALAAEYGVVTTTDNQEAVE--EADVVFLAVKPQDLE 76 (266)
T ss_pred ceEEEEcc-CHHHHHHHHHHHhcCCCCcceEE--EeCCCHHHHHHHHHHcCCcccCcHHHHHh--hCCEEEEEeChHhHH
Confidence 67999999 999999999999877 4566 4555542221 125556677778777 799999999999999
Q ss_pred HHHHHHHH-cCCCEEEEeCCCCCHHHHHHHHH
Q 030169 131 AAIMEAME-AELDLVVCITEGIPQHDMVINFT 161 (182)
Q Consensus 131 ~a~~eAie-~GIk~VV~iTeG~~~eD~~~l~~ 161 (182)
+++...-. ..=++||-+..|++.++++.+.-
T Consensus 77 ~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~ 108 (266)
T COG0345 77 EVLSKLKPLTKDKLVISIAAGVSIETLERLLG 108 (266)
T ss_pred HHHHHhhcccCCCEEEEEeCCCCHHHHHHHcC
Confidence 99888874 34456777799999999988874
No 68
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.47 E-value=0.00028 Score=63.10 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=68.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCC-CCeEec----Ccc-----ccc--cHHHHHhccCCcEEEEeeC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKK-GGTEHL----GLP-----VFN--SVAEAKAETKANASVIYVP 125 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~-~G~~i~----GvP-----Vy~--Sv~ea~~~~~~DvaVdfVp 125 (182)
+||+|+|+||..|+.+++.+.+. +.+++ +-+++.. .|+.+. .++ .|. +.+++.+ ++|++++.+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~-~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEIT-YLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAE--DADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEE-EEeccchhcCCChHHhCccccccCCceeecCCHHHhhc--CCCEEEECCC
Confidence 47999999999999999988865 58888 6545443 343221 111 133 3445444 7999999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHH
Q 030169 126 PPFAAAAIMEAMEAELDLVVCITEGIPQHDM 156 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~VV~iTeG~~~eD~ 156 (182)
.....+.+.++.++|+++|=. +..+..++.
T Consensus 78 ~~~s~~~~~~~~~~G~~VIDl-S~~fR~~~~ 107 (346)
T TIGR01850 78 HGVSAELAPELLAAGVKVIDL-SADFRLKDP 107 (346)
T ss_pred chHHHHHHHHHHhCCCEEEeC-ChhhhcCCh
Confidence 999999999999999665554 777776653
No 69
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.44 E-value=0.00037 Score=62.75 Aligned_cols=94 Identities=19% Similarity=0.304 Sum_probs=72.7
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe---EecCccccccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~---~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
+..+|+|+|+ |.+|++++.+|.+.|.+|+ =|+-++..-- +..|+.|| +++|+.+ ..|++++.+|-..-.++-
T Consensus 17 kgK~iaIIGY-GsQG~ahalNLRDSGlnVi-iGlr~g~~s~~kA~~dGf~V~-~v~ea~k--~ADvim~L~PDe~q~~vy 91 (338)
T COG0059 17 KGKKVAIIGY-GSQGHAQALNLRDSGLNVI-IGLRKGSSSWKKAKEDGFKVY-TVEEAAK--RADVVMILLPDEQQKEVY 91 (338)
T ss_pred cCCeEEEEec-ChHHHHHHhhhhhcCCcEE-EEecCCchhHHHHHhcCCEee-cHHHHhh--cCCEEEEeCchhhHHHHH
Confidence 3457999999 9999999999999999988 5665554210 13589987 5788888 799999999998888888
Q ss_pred HHHHHcCCC--EEEEeCCCCCHHH
Q 030169 134 MEAMEAELD--LVVCITEGIPQHD 155 (182)
Q Consensus 134 ~eAie~GIk--~VV~iTeG~~~eD 155 (182)
++.++-..+ .++.++-||.+|-
T Consensus 92 ~~~I~p~Lk~G~aL~FaHGfNihf 115 (338)
T COG0059 92 EKEIAPNLKEGAALGFAHGFNIHF 115 (338)
T ss_pred HHHhhhhhcCCceEEeccccceec
Confidence 877765333 2677788887764
No 70
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.42 E-value=0.00037 Score=62.40 Aligned_cols=105 Identities=16% Similarity=0.099 Sum_probs=70.9
Q ss_pred ceEEEEccCCCCchhhhHHHHH------h--CCceEEeeccCCC-----CCeEe---------cCcccc--c--cHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIE------Y--GTKMVVGGVTPKK-----GGTEH---------LGLPVF--N--SVAEAK 112 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~------~--g~~IV~AgVdp~~-----~G~~i---------~GvPVy--~--Sv~ea~ 112 (182)
+||+|+|| |..|+.+++.+.+ + +++|| +-.|... .|-+. ..+..| + +++++.
T Consensus 1 mrVaIiGf-G~VG~~va~~L~~~~~~~~~g~~l~VV-aVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll 78 (326)
T PRK06392 1 IRISIIGL-GNVGLNVLRIIKSRNDDRRNNNGISVV-SVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIF 78 (326)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCHHhHhcCCCeEEE-EEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHh
Confidence 47999999 9999999998875 3 46777 5433321 11000 011122 2 566665
Q ss_pred hccCCcEEEEeeChH----HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 113 AETKANASVIYVPPP----FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 113 ~~~~~DvaVdfVpp~----av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
+ .++|++|+.+|.. -+.+...+|+++|+++|.. .-|.--....+|.++|++-.
T Consensus 79 ~-~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTa-NKgalA~~~~eL~~lA~~~g 135 (326)
T PRK06392 79 E-IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTA-NKSGLANHWHDIMDSASKNR 135 (326)
T ss_pred c-CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcC-CHHHHHhhHHHHHHHHHHcC
Confidence 4 4799999999742 2678889999999999876 55555566788888887643
No 71
>PRK08605 D-lactate dehydrogenase; Validated
Probab=97.42 E-value=0.00031 Score=62.42 Aligned_cols=100 Identities=14% Similarity=0.138 Sum_probs=68.8
Q ss_pred CceEEEEccCCCCchhhhHHH-HHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHH--H
Q 030169 58 NTRVICQGITGKNGTFHTEQA-IEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI--M 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~-~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~--~ 134 (182)
.++|.|+|+ |++|+.+++.+ ..+|++|+ +.||.........+....+++|+.+ ++|++++.+|-......+ +
T Consensus 146 g~~VgIIG~-G~IG~~vA~~L~~~~g~~V~--~~d~~~~~~~~~~~~~~~~l~ell~--~aDvIvl~lP~t~~t~~li~~ 220 (332)
T PRK08605 146 DLKVAVIGT-GRIGLAVAKIFAKGYGSDVV--AYDPFPNAKAATYVDYKDTIEEAVE--GADIVTLHMPATKYNHYLFNA 220 (332)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCEEE--EECCCccHhHHhhccccCCHHHHHH--hCCEEEEeCCCCcchhhhcCH
Confidence 457999998 99999999998 56788988 7887653211123444568999988 799999999976555444 1
Q ss_pred ---HHHHcCCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 135 ---EAMEAELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 135 ---eAie~GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
..++.| ..+|+++.|..+.....+.++.
T Consensus 221 ~~l~~mk~g-ailIN~sRG~~vd~~aL~~aL~ 251 (332)
T PRK08605 221 DLFKHFKKG-AVFVNCARGSLVDTKALLDALD 251 (332)
T ss_pred HHHhcCCCC-cEEEECCCCcccCHHHHHHHHH
Confidence 222333 2577877777665555444443
No 72
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=97.41 E-value=0.0012 Score=52.20 Aligned_cols=83 Identities=17% Similarity=0.212 Sum_probs=61.7
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCC--CCCeEecCccccccHHHHHhc-cCCcEEEEeeC-hHHHHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK--KGGTEHLGLPVFNSVAEAKAE-TKANASVIYVP-PPFAAAAIME 135 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~--~~G~~i~GvPVy~Sv~ea~~~-~~~DvaVdfVp-p~av~~a~~e 135 (182)
+++|+|+ |.+|+.+++.+.+.|.+++ |-+|.. +.++.+.|+|+|.+.+++.+. .+.+..++.++ +..-+++.+.
T Consensus 1 ~~~I~Ga-g~~g~~~~~~l~~~g~~vv-gfid~~~~~~~~~i~g~pvlg~~~~l~~~~~~~~~~iiai~~~~~~~~i~~~ 78 (201)
T TIGR03570 1 KLVIIGA-GGHGRVVADIAEDSGWEIV-GFLDDNPALQGTSVDGLPVLGGDEDLLRYPPDEVDLVVAIGDNKLRRRLFEK 78 (201)
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCEEE-EEEcCCccccCcccCCccEECCHHHHhhhcccccEEEEEcCCHHHHHHHHHH
Confidence 4889999 9999999999998899999 877655 346678899999987775442 14567777774 4555566666
Q ss_pred HHHcCCCEE
Q 030169 136 AMEAELDLV 144 (182)
Q Consensus 136 Aie~GIk~V 144 (182)
+.+.+++..
T Consensus 79 l~~~g~~~~ 87 (201)
T TIGR03570 79 LKAKGYRFA 87 (201)
T ss_pred HHhCCCcce
Confidence 667776654
No 73
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.40 E-value=0.00019 Score=64.78 Aligned_cols=102 Identities=21% Similarity=0.199 Sum_probs=79.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC--CceEEeec-------------cCCCC-CeEe-cCccccccHHHHHhccCCcEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG--TKMVVGGV-------------TPKKG-GTEH-LGLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgV-------------dp~~~-G~~i-~GvPVy~Sv~ea~~~~~~DvaV 121 (182)
++|.|.|+ |.+|+++++.+.+.| ..++ +- |+..- |... .++...++++++.+ ++|+++
T Consensus 2 ~kI~ViGa-GswGTALA~~la~ng~~V~lw--~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~--~ad~iv 76 (329)
T COG0240 2 MKIAVIGA-GSWGTALAKVLARNGHEVRLW--GRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALD--GADIIV 76 (329)
T ss_pred ceEEEEcC-ChHHHHHHHHHHhcCCeeEEE--ecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHh--cCCEEE
Confidence 68999999 999999999999887 4455 32 22211 1111 25677888999999 799999
Q ss_pred EeeChHHHHHHHHHH---HHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 122 IYVPPPFAAAAIMEA---MEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 122 dfVpp~av~~a~~eA---ie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+.+|..+..++++.. +..+.+.|+| |.|+-.+....+.+..+++
T Consensus 77 ~avPs~~~r~v~~~l~~~l~~~~~iv~~-sKGie~~t~~l~seii~e~ 123 (329)
T COG0240 77 IAVPSQALREVLRQLKPLLLKDAIIVSA-TKGLEPETGRLLSEIIEEE 123 (329)
T ss_pred EECChHHHHHHHHHHhhhccCCCeEEEE-eccccCCCcchHHHHHHHH
Confidence 999999999999885 3567777787 9999998888888877554
No 74
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.39 E-value=0.00015 Score=64.58 Aligned_cols=101 Identities=17% Similarity=0.177 Sum_probs=70.2
Q ss_pred EEEEccCCCCchhhhHHHHHhC-C-ceEEeeccCCC--------CCeEe----cCccccccHHHHHhccCCcEEEEeeCh
Q 030169 61 VICQGITGKNGTFHTEQAIEYG-T-KMVVGGVTPKK--------GGTEH----LGLPVFNSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g-~-~IV~AgVdp~~--------~G~~i----~GvPVy~Sv~ea~~~~~~DvaVdfVpp 126 (182)
|+|.|+ |.+|+.+++.+.+.+ . +|++|+-++.+ .+..+ .++-=..+++++++ +.|++|..+||
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~--~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR--GCDVVINCAGP 77 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT--TSSEEEE-SSG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHh--cCCEEEECCcc
Confidence 689999 999999999998766 4 77767766655 11111 12222334667777 78999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 127 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
.....+++.|+++|++-|= +.+-.+++.++.+.|++--
T Consensus 78 ~~~~~v~~~~i~~g~~yvD---~~~~~~~~~~l~~~a~~~g 115 (386)
T PF03435_consen 78 FFGEPVARACIEAGVHYVD---TSYVTEEMLALDEEAKEAG 115 (386)
T ss_dssp GGHHHHHHHHHHHT-EEEE---SS-HHHHHHHCHHHHHHTT
T ss_pred chhHHHHHHHHHhCCCeec---cchhHHHHHHHHHHHHhhC
Confidence 9999999999999998654 4446778888888887433
No 75
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=97.38 E-value=0.00073 Score=57.72 Aligned_cols=80 Identities=9% Similarity=0.004 Sum_probs=63.1
Q ss_pred CceEEeeccCCCCCe----EecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCC--CHHHH
Q 030169 83 TKMVVGGVTPKKGGT----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGI--PQHDM 156 (182)
Q Consensus 83 ~~IV~AgVdp~~~G~----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~--~~eD~ 156 (182)
.+++ +-.|+....- +..|+++|++++|+++ .++|++++.+|+....+.+..++++|+++++. +.|- ..++.
T Consensus 2 ~eLv-aV~D~~~e~a~~~a~~~g~~~~~d~~eLl~-~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~-s~gAlad~e~~ 78 (229)
T TIGR03855 2 FEIA-AVYDRNPKDAKELAERCGAKIVSDFDEFLP-EDVDIVVEAASQEAVKEYAEKILKNGKDLLIM-SVGALADRELR 78 (229)
T ss_pred eEEE-EEECCCHHHHHHHHHHhCCceECCHHHHhc-CCCCEEEECCChHHHHHHHHHHHHCCCCEEEE-CCcccCCHHHH
Confidence 4566 6666654211 1236899999999876 37999999999999999999999999998885 6653 56889
Q ss_pred HHHHHHhcc
Q 030169 157 VINFTRVNI 165 (182)
Q Consensus 157 ~~l~~~ak~ 165 (182)
++|.+++++
T Consensus 79 ~~l~~aA~~ 87 (229)
T TIGR03855 79 ERLREVARS 87 (229)
T ss_pred HHHHHHHHh
Confidence 999998865
No 76
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.38 E-value=0.00062 Score=58.44 Aligned_cols=100 Identities=14% Similarity=0.075 Sum_probs=68.9
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChHHHHH-HH--
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAA-AI-- 133 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~-a~-- 133 (182)
||.|+|. |.||+.+++.+.+.|.+|+ ++|+...--+ ..|.....+.+++.+ ++|++++.+|.....+ ++
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~G~~V~--~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~v~~~ 75 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKAGYQLH--VTTIGPEVADELLAAGAVTAETARQVTE--QADVIFTMVPDSPQVEEVAFG 75 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHCCCeEE--EEcCCHHHHHHHHHCCCcccCCHHHHHh--cCCEEEEecCCHHHHHHHHcC
Confidence 5889998 9999999999999998888 6676541110 135667788989888 7999999999864443 33
Q ss_pred -HHHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 134 -MEAMEA-EL-DLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 134 -~eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+.++.. .- +.++. ++.++..+..++.+..++
T Consensus 76 ~~~~~~~~~~g~iivd-~st~~~~~~~~l~~~l~~ 109 (291)
T TIGR01505 76 ENGIIEGAKPGKTLVD-MSSISPIESKRFAKAVKE 109 (291)
T ss_pred cchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH
Confidence 112222 11 23454 566667777777776654
No 77
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.37 E-value=0.00064 Score=59.30 Aligned_cols=105 Identities=15% Similarity=0.127 Sum_probs=71.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHHH--
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIME-- 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~e-- 135 (182)
+||.++|. |+||..+++.+.+.|.++.+-..+|....-...|..++++.+|+.+ ++|++++.+|... +.+++..
T Consensus 1 m~Ig~IGl-G~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~--~advVi~~v~~~~~v~~v~~~~~ 77 (292)
T PRK15059 1 MKLGFIGL-GIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTE--ASDIIFIMVPDTPQVEEVLFGEN 77 (292)
T ss_pred CeEEEEcc-CHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCc
Confidence 36899998 9999999999999998876234555321101136778899999887 8999999999774 3444321
Q ss_pred HHHcCCC--EEEEeCCCCCHHHHHHHHHHhccc
Q 030169 136 AMEAELD--LVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 136 Aie~GIk--~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
.+-.+.+ .+|+-++.++..+..++.+.++.-
T Consensus 78 g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~ 110 (292)
T PRK15059 78 GCTKASLKGKTIVDMSSISPIETKRFARQVNEL 110 (292)
T ss_pred chhccCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 1111222 244447888888888888876543
No 78
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.37 E-value=0.0012 Score=54.77 Aligned_cols=92 Identities=22% Similarity=0.274 Sum_probs=63.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-------E--ecCcc--cc-ccHHHHHhccCCcEEEEeeCh
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-------E--HLGLP--VF-NSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-------~--i~GvP--Vy-~Sv~ea~~~~~~DvaVdfVpp 126 (182)
|||.|+|.+|.||+.+.+.+.+.|.+|++..-++.+... . ..|+. +. .+.+++.+ ++|++++.+|+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~--~aDvVilavp~ 78 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAK--RADVVILAVPW 78 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHh--cCCEEEEECCH
Confidence 579999867999999999999888777722233321100 0 01221 22 35567777 78999999999
Q ss_pred HHHHHHHHHHHHc--CCCEEEEeCCCCCH
Q 030169 127 PFAAAAIMEAMEA--ELDLVVCITEGIPQ 153 (182)
Q Consensus 127 ~av~~a~~eAie~--GIk~VV~iTeG~~~ 153 (182)
....+++++.... + +.|+-++-|++.
T Consensus 79 ~~~~~~l~~l~~~l~~-~vvI~~~ngi~~ 106 (219)
T TIGR01915 79 DHVLKTLESLRDELSG-KLVISPVVPLAS 106 (219)
T ss_pred HHHHHHHHHHHHhccC-CEEEEeccCcee
Confidence 9999988776432 4 778877889886
No 79
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.36 E-value=0.00047 Score=61.56 Aligned_cols=88 Identities=11% Similarity=0.012 Sum_probs=64.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC-CceEEee-ccCCCCCeEecC-ccc--c-------------c-cHHHHHhccCCcE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG-TKMVVGG-VTPKKGGTEHLG-LPV--F-------------N-SVAEAKAETKANA 119 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g-~~IV~Ag-Vdp~~~G~~i~G-vPV--y-------------~-Sv~ea~~~~~~Dv 119 (182)
.||+|+|++|.+|+.+++.+.+.. .+++ +- .++...|+.+.. +|. | . +.++ .+ ++|+
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~-~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--~~Dv 79 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVT-ALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VD--DVDI 79 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEE-EEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hc--CCCE
Confidence 689999999999999999888655 7888 54 455555544321 122 1 1 1222 23 7999
Q ss_pred EEEeeChHHHHHHHHHHHHcCCCEEEEeCCCC
Q 030169 120 SVIYVPPPFAAAAIMEAMEAELDLVVCITEGI 151 (182)
Q Consensus 120 aVdfVpp~av~~a~~eAie~GIk~VV~iTeG~ 151 (182)
+++.+|+....+.++.+.++|++.|.. +.-+
T Consensus 80 Vf~a~p~~~s~~~~~~~~~~G~~vIDl-s~~f 110 (349)
T PRK08664 80 VFSALPSDVAGEVEEEFAKAGKPVFSN-ASAH 110 (349)
T ss_pred EEEeCChhHHHHHHHHHHHCCCEEEEC-Cchh
Confidence 999999999999999999999988766 5433
No 80
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=97.35 E-value=0.00042 Score=61.65 Aligned_cols=87 Identities=15% Similarity=0.051 Sum_probs=61.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCC-CCCeEecC-ccc--c------------ccHH-HHHhccCCcEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPK-KGGTEHLG-LPV--F------------NSVA-EAKAETKANAS 120 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~-~~G~~i~G-vPV--y------------~Sv~-ea~~~~~~Dva 120 (182)
+||+|+|++|.+|+.+.+.+.+.+ ++|+ +.++.. ..|+.... +|. | .+++ +.. .++|++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~-~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~DvV 77 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELA-KVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVAS--KDVDIV 77 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEE-EEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHh--ccCCEE
Confidence 479999999999999999888765 8888 654332 33433321 111 1 1111 222 379999
Q ss_pred EEeeChHHHHHHHHHHHHcCCCEEEEeCC
Q 030169 121 VIYVPPPFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 121 VdfVpp~av~~a~~eAie~GIk~VV~iTe 149 (182)
++.+|+....+..+++.++|+++|.. +.
T Consensus 78 f~a~p~~~s~~~~~~~~~~G~~VIDl-sg 105 (341)
T TIGR00978 78 FSALPSEVAEEVEPKLAEAGKPVFSN-AS 105 (341)
T ss_pred EEeCCHHHHHHHHHHHHHCCCEEEEC-Ch
Confidence 99999999999999999999997765 53
No 81
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.35 E-value=0.00027 Score=60.68 Aligned_cols=98 Identities=17% Similarity=0.106 Sum_probs=66.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC--C------CeE---e------cCccccccHHHHHhccCCcEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK--G------GTE---H------LGLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~--~------G~~---i------~GvPVy~Sv~ea~~~~~~DvaV 121 (182)
+||.|+|+ |.||..++..+.+.|.++. .+++.. . +.. . .++.+..+.+++.+ ++|+++
T Consensus 2 mkI~iiG~-G~mG~~~a~~L~~~g~~V~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~vi 76 (325)
T PRK00094 2 MKIAVLGA-GSWGTALAIVLARNGHDVT--LWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA--DADLIL 76 (325)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCEEE--EEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh--CCCEEE
Confidence 57999998 9999999999998887765 444431 0 000 0 13445667888777 799999
Q ss_pred EeeChHHHHHHHHHHHHc-C-CCEEEEeCCCCCHHHHHHHHH
Q 030169 122 IYVPPPFAAAAIMEAMEA-E-LDLVVCITEGIPQHDMVINFT 161 (182)
Q Consensus 122 dfVpp~av~~a~~eAie~-G-Ik~VV~iTeG~~~eD~~~l~~ 161 (182)
+.+|+..+.+++.+.... . =..|+.++.|++.+...++.+
T Consensus 77 ~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~ 118 (325)
T PRK00094 77 VAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSE 118 (325)
T ss_pred EeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHH
Confidence 999999888888766543 1 134555566888765444433
No 82
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.34 E-value=0.00059 Score=58.66 Aligned_cols=99 Identities=10% Similarity=0.034 Sum_probs=69.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE----ecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE----HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~----i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
+||.|+|. |.||..++..+.+.|.+|. ++|+.....+ .+.+....+..++.+ ++|++++.+|+..+.+.+.
T Consensus 1 m~I~IIG~-G~mG~sla~~L~~~g~~V~--~~d~~~~~~~~a~~~g~~~~~~~~~~~~~--~aDlVilavp~~~~~~~~~ 75 (279)
T PRK07417 1 MKIGIVGL-GLIGGSLGLDLRSLGHTVY--GVSRRESTCERAIERGLVDEASTDLSLLK--DCDLVILALPIGLLLPPSE 75 (279)
T ss_pred CeEEEEee-cHHHHHHHHHHHHCCCEEE--EEECCHHHHHHHHHCCCcccccCCHhHhc--CCCEEEEcCCHHHHHHHHH
Confidence 47999997 9999999999998898877 7776542111 112233333334455 7999999999999999888
Q ss_pred HHHHc-CCCEEEEeCCCCCHHHHHHHHHH
Q 030169 135 EAMEA-ELDLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 135 eAie~-GIk~VV~iTeG~~~eD~~~l~~~ 162 (182)
+.... .-..+|.-+.+++.+....+.+.
T Consensus 76 ~l~~~l~~~~ii~d~~Svk~~~~~~~~~~ 104 (279)
T PRK07417 76 QLIPALPPEAIVTDVGSVKAPIVEAWEKL 104 (279)
T ss_pred HHHHhCCCCcEEEeCcchHHHHHHHHHHh
Confidence 77654 33445554777888777766654
No 83
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=97.33 E-value=0.00053 Score=59.10 Aligned_cols=100 Identities=13% Similarity=0.040 Sum_probs=71.3
Q ss_pred EEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChH-HHHHHH---HH
Q 030169 63 CQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI---ME 135 (182)
Q Consensus 63 VvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a~---~e 135 (182)
++|. |.||..+++.+.+.|.+|. +.|+.....+ ..|..+.++.+++.+ ++|++++.+|+. .+.+++ +.
T Consensus 1 ~IGl-G~mG~~mA~~L~~~G~~V~--v~dr~~~~~~~l~~~g~~~~~s~~~~~~--~advVil~vp~~~~~~~v~~g~~~ 75 (288)
T TIGR01692 1 FIGL-GNMGGPMAANLLKAGHPVR--VFDLFPDAVEEAVAAGAQAAASPAEAAE--GADRVITMLPAGQHVISVYSGDEG 75 (288)
T ss_pred CCcc-cHhHHHHHHHHHhCCCeEE--EEeCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEeCCChHHHHHHHcCcch
Confidence 3576 9999999999999998887 5666542111 136778889999988 799999999984 455555 33
Q ss_pred HHHc-CCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 136 AMEA-ELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 136 Aie~-GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
..+. .-..+++-+++++++...++.+..++--
T Consensus 76 l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g 108 (288)
T TIGR01692 76 ILPKVAKGSLLIDCSTIDPDSARKLAELAAAHG 108 (288)
T ss_pred HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC
Confidence 3333 2223444477999999999988876543
No 84
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.30 E-value=0.0021 Score=58.00 Aligned_cols=91 Identities=12% Similarity=0.140 Sum_probs=67.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAi 137 (182)
.++|+|+|..|.||..+++.+.+.|.++. ++++.. +.+.+++.+ ++|++++.+|.....+.+.+..
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~--~~d~~~----------~~~~~~~~~--~aDlVilavP~~~~~~~~~~l~ 163 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVR--ILEQDD----------WDRAEDILA--DAGMVIVSVPIHLTEEVIARLP 163 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEE--EeCCCc----------chhHHHHHh--cCCEEEEeCcHHHHHHHHHHHh
Confidence 46799999779999999999999998877 666532 135677777 7999999999999999988755
Q ss_pred HcCCCEEEEeCCCCCHHHHHHHHHH
Q 030169 138 EAELDLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 138 e~GIk~VV~iTeG~~~eD~~~l~~~ 162 (182)
...-..+|.=.+.+...-+..+.+.
T Consensus 164 ~l~~~~iv~Dv~SvK~~~~~~~~~~ 188 (374)
T PRK11199 164 PLPEDCILVDLTSVKNAPLQAMLAA 188 (374)
T ss_pred CCCCCcEEEECCCccHHHHHHHHHh
Confidence 4333345553455555555555544
No 85
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=97.29 E-value=0.0013 Score=55.24 Aligned_cols=88 Identities=13% Similarity=0.090 Sum_probs=57.3
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeec-cCCCCCe-EecCcc-cccc---HHHHHhc----cC-CcEEEEeeCh--
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGV-TPKKGGT-EHLGLP-VFNS---VAEAKAE----TK-ANASVIYVPP-- 126 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgV-dp~~~G~-~i~GvP-Vy~S---v~ea~~~----~~-~DvaVdfVpp-- 126 (182)
+|+|.|+||..|+.+++.+.+.|.++. +.+ +|.+... .+..++ =|.+ +.++.+. .. +|.++...|+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~-~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~~ 79 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFL-VASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPIP 79 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEE-EEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCCC
Confidence 489999999999999999999999988 554 3322110 011111 1222 4444421 14 7877766653
Q ss_pred ---HHHHHHHHHHHHcCCCEEEEeC
Q 030169 127 ---PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 127 ---~av~~a~~eAie~GIk~VV~iT 148 (182)
.....+++.|.++|++.+|.++
T Consensus 80 ~~~~~~~~~i~aa~~~gv~~~V~~S 104 (285)
T TIGR03649 80 DLAPPMIKFIDFARSKGVRRFVLLS 104 (285)
T ss_pred ChhHHHHHHHHHHHHcCCCEEEEee
Confidence 3566778888999999988754
No 86
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.28 E-value=0.001 Score=60.75 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=66.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeEec---------CccccccHHHH-HhccCCcEEEEeeC
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTEHL---------GLPVFNSVAEA-KAETKANASVIYVP 125 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~i~---------GvPVy~Sv~ea-~~~~~~DvaVdfVp 125 (182)
..+||+|+|+||.-|+.+.+.+.+. +.+|. .-......|+.+. .++.+.++++. .+ ++|+++...|
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~-~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~--~~DvVf~Alp 113 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEIT-VMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFS--DVDAVFCCLP 113 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEE-EEEChhhcCCCchhhCccccCccccceecCCHHHhc--CCCEEEEcCC
Confidence 5579999999999999999998876 58887 5444434443321 23323333432 33 7999999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHH
Q 030169 126 PPFAAAAIMEAMEAELDLVVCITEGIPQHDM 156 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~VV~iTeG~~~eD~ 156 (182)
...+.+.+..+ +.|.++|-. +.-+..++-
T Consensus 114 ~~~s~~i~~~~-~~g~~VIDl-Ss~fRl~~~ 142 (381)
T PLN02968 114 HGTTQEIIKAL-PKDLKIVDL-SADFRLRDI 142 (381)
T ss_pred HHHHHHHHHHH-hCCCEEEEc-CchhccCCc
Confidence 99999999885 788665554 766655543
No 87
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.27 E-value=0.0011 Score=59.43 Aligned_cols=83 Identities=12% Similarity=0.055 Sum_probs=61.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC---CceEEeeccCCCCCeEec----Ccccccc-HHHHHhccCCcEEEEeeChHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG---TKMVVGGVTPKKGGTEHL----GLPVFNS-VAEAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g---~~IV~AgVdp~~~G~~i~----GvPVy~S-v~ea~~~~~~DvaVdfVpp~av 129 (182)
.+||+|+|+||..|+++.+.+.+.+ .+++ ...+....|+.+. .+++-+. ..+ .+ ++|+++..+|+...
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~-~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~~--~vD~vFla~p~~~s 79 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLH-LLASSESAGHSVPFAGKNLRVREVDSFD-FS--QVQLAFFAAGAAVS 79 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEE-EEECcccCCCeeccCCcceEEeeCChHH-hc--CCCEEEEcCCHHHH
Confidence 3789999999999999999999644 5666 5555555564432 1222211 122 34 79999999999999
Q ss_pred HHHHHHHHHcCCCEE
Q 030169 130 AAAIMEAMEAELDLV 144 (182)
Q Consensus 130 ~~a~~eAie~GIk~V 144 (182)
.+.+.++.++|+++|
T Consensus 80 ~~~v~~~~~~G~~VI 94 (336)
T PRK05671 80 RSFAEKARAAGCSVI 94 (336)
T ss_pred HHHHHHHHHCCCeEE
Confidence 999999999999866
No 88
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.25 E-value=0.0011 Score=59.00 Aligned_cols=81 Identities=16% Similarity=0.032 Sum_probs=60.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC---CceEEeeccCCCCCeEec----CccccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG---TKMVVGGVTPKKGGTEHL----GLPVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g---~~IV~AgVdp~~~G~~i~----GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
+||+|+|++|.-|+.+++.+.+.+ .+++ +-......|+.+. .+++.+.-.+..+ ++|+++..+|.....+
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~-~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~--~vDvVf~A~g~g~s~~ 78 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLR-LLASARSAGKELSFKGKELKVEDLTTFDFS--GVDIALFSAGGSVSKK 78 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEE-EEEccccCCCeeeeCCceeEEeeCCHHHHc--CCCEEEECCChHHHHH
Confidence 589999999999999999999854 5777 6555555555442 2333322222234 7999999999999999
Q ss_pred HHHHHHHcCCC
Q 030169 132 AIMEAMEAELD 142 (182)
Q Consensus 132 a~~eAie~GIk 142 (182)
.+..++++|.+
T Consensus 79 ~~~~~~~~G~~ 89 (334)
T PRK14874 79 YAPKAAAAGAV 89 (334)
T ss_pred HHHHHHhCCCE
Confidence 99999999983
No 89
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.24 E-value=0.0011 Score=52.58 Aligned_cols=87 Identities=16% Similarity=0.204 Sum_probs=59.7
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC----------------CCe-EecCccccccHHHHHhccCCcEEEE
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK----------------GGT-EHLGLPVFNSVAEAKAETKANASVI 122 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~----------------~G~-~i~GvPVy~Sv~ea~~~~~~DvaVd 122 (182)
||.|.|+ |.+|++++..+.+.|.++. -..+.. .+. -...+.+.++++++++ +.|++++
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~~V~--l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~--~ad~Iii 75 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGHEVT--LWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE--DADIIII 75 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTEEEE--EETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT--T-SEEEE
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCEEE--EEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC--cccEEEe
Confidence 6999999 9999999999998885544 222221 000 1124667888999998 8999999
Q ss_pred eeChHHHHHHHHHHHHc--CCCEEEEeCCCC
Q 030169 123 YVPPPFAAAAIMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 123 fVpp~av~~a~~eAie~--GIk~VV~iTeG~ 151 (182)
.+|..+..+.+++.... .-..+|..+.||
T Consensus 76 avPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 76 AVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 99999999998887763 333445558898
No 90
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.22 E-value=0.0011 Score=54.26 Aligned_cols=83 Identities=19% Similarity=0.216 Sum_probs=60.6
Q ss_pred EEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--E--ecCccc----ccc---HHHHHhccCCcEEEEeeC----
Q 030169 61 VICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--E--HLGLPV----FNS---VAEAKAETKANASVIYVP---- 125 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~--i~GvPV----y~S---v~ea~~~~~~DvaVdfVp---- 125 (182)
|+|.|++|++|+.+++.+.+.+.+|. +.+.+..... + ..|+-+ |.+ +.++++ ++|+++..++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~-~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~--g~d~v~~~~~~~~~ 77 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVR-ALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALK--GVDAVFSVTPPSHP 77 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEE-EEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHT--TCSEEEEESSCSCC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcE-EEEeccchhhhhhhhcccceEeecccCCHHHHHHHHc--CCceEEeecCcchh
Confidence 78999999999999999999888888 7666542100 0 012221 333 555566 8999999999
Q ss_pred --hHHHHHHHHHHHHcCCCEEEE
Q 030169 126 --PPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 126 --p~av~~a~~eAie~GIk~VV~ 146 (182)
......+++.|.++|++.+|-
T Consensus 78 ~~~~~~~~li~Aa~~agVk~~v~ 100 (233)
T PF05368_consen 78 SELEQQKNLIDAAKAAGVKHFVP 100 (233)
T ss_dssp CHHHHHHHHHHHHHHHT-SEEEE
T ss_pred hhhhhhhhHHHhhhccccceEEE
Confidence 457788999999999999985
No 91
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.22 E-value=0.0012 Score=57.20 Aligned_cols=99 Identities=18% Similarity=0.213 Sum_probs=64.3
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-e-------cC--------------ccccccHHHHHh
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-H-------LG--------------LPVFNSVAEAKA 113 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-i-------~G--------------vPVy~Sv~ea~~ 113 (182)
++-++|.|+|+ |.||..++..+...|.+|+ .+|+....-+ . .+ +.+.++.+++.+
T Consensus 2 ~~~~~I~vIGa-G~mG~~iA~~l~~~g~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 78 (311)
T PRK06130 2 NPIQNLAIIGA-GTMGSGIAALFARKGLQVV--LIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVS 78 (311)
T ss_pred CCccEEEEECC-CHHHHHHHHHHHhCCCeEE--EEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhc
Confidence 34568999999 9999999999998898888 5665331100 0 01 234456777776
Q ss_pred ccCCcEEEEeeChHH--HHHHHHHHHHc-CCC-EEEEeCCCCCHHHHHHH
Q 030169 114 ETKANASVIYVPPPF--AAAAIMEAMEA-ELD-LVVCITEGIPQHDMVIN 159 (182)
Q Consensus 114 ~~~~DvaVdfVpp~a--v~~a~~eAie~-GIk-~VV~iTeG~~~eD~~~l 159 (182)
++|++++.+|+.. ..++..+.-.. .-. .|+..|.|++.+++.+.
T Consensus 79 --~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~ 126 (311)
T PRK06130 79 --GADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQA 126 (311)
T ss_pred --cCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhh
Confidence 7999999999875 33444443221 112 44456889987655543
No 92
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.21 E-value=0.0015 Score=60.32 Aligned_cols=101 Identities=17% Similarity=0.156 Sum_probs=70.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC-eE---ecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG-TE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G-~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
+||.|+|+.|.||..+++.+.+.|.+++ ++++.... .+ ..|+.+.++.+++.+ ++|++++.+|+....+++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~--v~~r~~~~~~~~a~~~gv~~~~~~~e~~~--~aDvVIlavp~~~~~~vl~ 76 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVI--VTGRDPKKGKEVAKELGVEYANDNIDAAK--DADIVIISVPINVTEDVIK 76 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEE--EEECChHHHHHHHHHcCCeeccCHHHHhc--cCCEEEEecCHHHHHHHHH
Confidence 4799999779999999999999998877 44443211 01 136666777888777 7999999999999988888
Q ss_pred HHHHc-CCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 135 EAMEA-ELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 135 eAie~-GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
+.... .-..+|+-...+...-...+.+..
T Consensus 77 ~l~~~l~~~~iViDvsSvK~~~~~~l~~~~ 106 (437)
T PRK08655 77 EVAPHVKEGSLLMDVTSVKERPVEAMEEYA 106 (437)
T ss_pred HHHhhCCCCCEEEEcccccHHHHHHHHHhc
Confidence 77654 222343334445555555665554
No 93
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.21 E-value=0.00059 Score=53.58 Aligned_cols=98 Identities=17% Similarity=0.154 Sum_probs=60.2
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-----EecCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
.+..||.|+|+ ||.|+.+.+.+.+.|.+|+ +-.++..... .+.+.++. +++|+.+ +.|++++.||-++..
T Consensus 8 ~~~l~I~iIGa-GrVG~~La~aL~~ag~~v~-~v~srs~~sa~~a~~~~~~~~~~-~~~~~~~--~aDlv~iavpDdaI~ 82 (127)
T PF10727_consen 8 AARLKIGIIGA-GRVGTALARALARAGHEVV-GVYSRSPASAERAAAFIGAGAIL-DLEEILR--DADLVFIAVPDDAIA 82 (127)
T ss_dssp ----EEEEECT-SCCCCHHHHHHHHTTSEEE-EESSCHH-HHHHHHC--TT------TTGGGC--C-SEEEE-S-CCHHH
T ss_pred CCccEEEEECC-CHHHHHHHHHHHHCCCeEE-EEEeCCccccccccccccccccc-ccccccc--cCCEEEEEechHHHH
Confidence 45789999999 9999999999999998888 4334433111 13456665 4667777 799999999999999
Q ss_pred HHHHHHHHc---CCCEEEEeCCCCCHHHHHH
Q 030169 131 AAIMEAMEA---ELDLVVCITEGIPQHDMVI 158 (182)
Q Consensus 131 ~a~~eAie~---GIk~VV~iTeG~~~eD~~~ 158 (182)
+++++.-.. .-..+|+=|.|--.-|+++
T Consensus 83 ~va~~La~~~~~~~g~iVvHtSGa~~~~vL~ 113 (127)
T PF10727_consen 83 EVAEQLAQYGAWRPGQIVVHTSGALGSDVLA 113 (127)
T ss_dssp HHHHHHHCC--S-TT-EEEES-SS--GGGGH
T ss_pred HHHHHHHHhccCCCCcEEEECCCCChHHhhh
Confidence 999888876 2334666688866555543
No 94
>PRK07574 formate dehydrogenase; Provisional
Probab=97.19 E-value=0.0021 Score=58.86 Aligned_cols=106 Identities=15% Similarity=0.086 Sum_probs=72.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChHH-HHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~ 133 (182)
.++|.|+|+ |++|+.+++.+..+|++|. ++|+.....+ ..|+..+.+++|+.+ ++|++++.+|-.. +..++
T Consensus 192 gktVGIvG~-G~IG~~vA~~l~~fG~~V~--~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~lPlt~~T~~li 266 (385)
T PRK07574 192 GMTVGIVGA-GRIGLAVLRRLKPFDVKLH--YTDRHRLPEEVEQELGLTYHVSFDSLVS--VCDVVTIHCPLHPETEHLF 266 (385)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEE--EECCCCCchhhHhhcCceecCCHHHHhh--cCCEEEEcCCCCHHHHHHh
Confidence 356999999 9999999999999999999 7887642111 235666789999998 8999999999443 33333
Q ss_pred HHHHHcCC---CEEEEeCCCCCHHHHHHHHHHhcccchh
Q 030169 134 MEAMEAEL---DLVVCITEGIPQHDMVINFTRVNILLVA 169 (182)
Q Consensus 134 ~eAie~GI---k~VV~iTeG~~~eD~~~l~~~ak~ipv~ 169 (182)
.+..=..+ ..+|+++-| ..-|...|.++.+.-.++
T Consensus 267 ~~~~l~~mk~ga~lIN~aRG-~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 267 DADVLSRMKRGSYLVNTARG-KIVDRDAVVRALESGHLA 304 (385)
T ss_pred CHHHHhcCCCCcEEEECCCC-chhhHHHHHHHHHhCCcc
Confidence 32222222 357775555 444666666666554443
No 95
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.17 E-value=0.003 Score=58.22 Aligned_cols=106 Identities=9% Similarity=0.097 Sum_probs=79.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCC---------eE--ecCccccccHHHHHhccCCcEEEEeeCh
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGG---------TE--HLGLPVFNSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G---------~~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp 126 (182)
+||+|.|+ |..|+.++..+.+.+ .+|.+|+-++.+-. -+ ..++-=.+.+.++++ +.|++|...|+
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~--~~d~VIn~~p~ 78 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK--DFDLVINAAPP 78 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh--cCCEEEEeCCc
Confidence 57999999 999999999988776 89885654432211 01 123444455788888 66999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccchhc
Q 030169 127 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF 170 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~~ 170 (182)
.....+++.|++.|++.+-. +.+-+. ..++.+.+++-.+..
T Consensus 79 ~~~~~i~ka~i~~gv~yvDt-s~~~~~--~~~~~~~a~~Agit~ 119 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDT-SYYEEP--PWKLDEEAKKAGITA 119 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEc-ccCCch--hhhhhHHHHHcCeEE
Confidence 99999999999999999875 655544 377777777766543
No 96
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.16 E-value=0.0016 Score=59.06 Aligned_cols=97 Identities=18% Similarity=0.262 Sum_probs=65.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-Ee---------------------cC-ccccccHHHHHhcc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EH---------------------LG-LPVFNSVAEAKAET 115 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i---------------------~G-vPVy~Sv~ea~~~~ 115 (182)
+||.|+|. |.||..++..+.+.|.+++ ++|+...-- .+ .| +....+.+++.+
T Consensus 1 mkI~vIGl-G~~G~~lA~~La~~G~~V~--~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~-- 75 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLADLGHEVT--GVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR-- 75 (411)
T ss_pred CEEEEECC-CchhHHHHHHHHhcCCeEE--EEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh--
Confidence 47999998 9999999999999998888 665543110 00 12 455567788777
Q ss_pred CCcEEEEeeChH----------HHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHH
Q 030169 116 KANASVIYVPPP----------FAAAAIMEAMEA-ELDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 116 ~~DvaVdfVpp~----------av~~a~~eAie~-GIk~VV~iTeG~~~eD~~~l~ 160 (182)
++|++++.+|.. .+.+++++..+. .-..+|+..+.+++....++.
T Consensus 76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~ 131 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVV 131 (411)
T ss_pred hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHH
Confidence 799999999965 356666555443 222344446777666665553
No 97
>PLN03139 formate dehydrogenase; Provisional
Probab=97.15 E-value=0.0021 Score=58.86 Aligned_cols=105 Identities=12% Similarity=0.071 Sum_probs=71.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe---EecCccccccHHHHHhccCCcEEEEeeChH-HHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT---EHLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~---~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a~ 133 (182)
.++|.|+|+ |++|+.+++.+..+|++|+ ++|+..... ...|+..+.+++|+.. ++|++++.+|-. ....++
T Consensus 199 gktVGIVG~-G~IG~~vA~~L~afG~~V~--~~d~~~~~~~~~~~~g~~~~~~l~ell~--~sDvV~l~lPlt~~T~~li 273 (386)
T PLN03139 199 GKTVGTVGA-GRIGRLLLQRLKPFNCNLL--YHDRLKMDPELEKETGAKFEEDLDAMLP--KCDVVVINTPLTEKTRGMF 273 (386)
T ss_pred CCEEEEEee-cHHHHHHHHHHHHCCCEEE--EECCCCcchhhHhhcCceecCCHHHHHh--hCCEEEEeCCCCHHHHHHh
Confidence 457999998 9999999999999999998 678753211 1236666779999998 799999999943 333443
Q ss_pred HHH-HHc-CC-CEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 134 MEA-MEA-EL-DLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 134 ~eA-ie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
.+. ++. +- ..+|+ |.-=..-|.+.|.++.+.--+
T Consensus 274 ~~~~l~~mk~ga~lIN-~aRG~iVDe~AL~~AL~sG~l 310 (386)
T PLN03139 274 NKERIAKMKKGVLIVN-NARGAIMDTQAVADACSSGHI 310 (386)
T ss_pred CHHHHhhCCCCeEEEE-CCCCchhhHHHHHHHHHcCCc
Confidence 322 222 22 24666 444455566666666554444
No 98
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=97.15 E-value=0.0018 Score=58.34 Aligned_cols=86 Identities=10% Similarity=0.073 Sum_probs=61.8
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhC---CceEEeeccCCCCCeEec----CccccccHHHHHhccCCcEEEEeeChHH
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYG---TKMVVGGVTPKKGGTEHL----GLPVFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g---~~IV~AgVdp~~~G~~i~----GvPVy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
+...||+|+|++|.-|+.+.+.+.+.+ .++. .-......|+.+. .+++-+.-.+..+ ++|+++...|...
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~-~las~rsaGk~~~~~~~~~~v~~~~~~~~~--~~D~vf~a~p~~~ 81 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLK-MLASARSAGKKVTFEGRDYTVEELTEDSFD--GVDIALFSAGGSI 81 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEE-EEEccCCCCCeeeecCceeEEEeCCHHHHc--CCCEEEECCCcHH
Confidence 455789999999999999999998744 5565 3333444454432 2222222223344 7999999999999
Q ss_pred HHHHHHHHHHcCCCEE
Q 030169 129 AAAAIMEAMEAELDLV 144 (182)
Q Consensus 129 v~~a~~eAie~GIk~V 144 (182)
..+.+.++.++|+++|
T Consensus 82 s~~~~~~~~~~g~~VI 97 (344)
T PLN02383 82 SKKFGPIAVDKGAVVV 97 (344)
T ss_pred HHHHHHHHHhCCCEEE
Confidence 9999999999998766
No 99
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.13 E-value=0.0015 Score=56.79 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=68.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~ 134 (182)
++|.|+|. |.||..++..+.+.|.+|. .+|+.....+ ..|.....+..|+.+ ++|++++.+|+.. +.+++.
T Consensus 2 ~~Ig~IGl-G~mG~~mA~~l~~~G~~V~--v~d~~~~~~~~~~~~g~~~~~s~~~~~~--~aDvVi~~vp~~~~~~~vl~ 76 (296)
T PRK15461 2 AAIAFIGL-GQMGSPMASNLLKQGHQLQ--VFDVNPQAVDALVDKGATPAASPAQAAA--GAEFVITMLPNGDLVRSVLF 76 (296)
T ss_pred CeEEEEee-CHHHHHHHHHHHHCCCeEE--EEcCCHHHHHHHHHcCCcccCCHHHHHh--cCCEEEEecCCHHHHHHHHc
Confidence 37999998 9999999999999898887 6666542111 136778889999888 7899999999986 444432
Q ss_pred H--HHHcCC---CEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 135 E--AMEAEL---DLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 135 e--Aie~GI---k~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
. -+-+++ +.+|. ++-+++++..++.+..++
T Consensus 77 ~~~~i~~~l~~g~lvid-~sT~~p~~~~~l~~~l~~ 111 (296)
T PRK15461 77 GENGVCEGLSRDALVID-MSTIHPLQTDKLIADMQA 111 (296)
T ss_pred CcccHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH
Confidence 1 122222 24555 444556666666655543
No 100
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.10 E-value=0.0024 Score=56.96 Aligned_cols=101 Identities=20% Similarity=0.150 Sum_probs=67.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~eA 136 (182)
.++|.|+|+ |++|+.+++.+...|++|+ +.|+.... ....+....+++|+.+ ++|++++.+|... +...+.+.
T Consensus 146 g~~VgIIG~-G~IG~~vA~~L~~~G~~V~--~~d~~~~~-~~~~~~~~~~l~ell~--~aDiVil~lP~t~~t~~li~~~ 219 (330)
T PRK12480 146 NMTVAIIGT-GRIGAATAKIYAGFGATIT--AYDAYPNK-DLDFLTYKDSVKEAIK--DADIISLHVPANKESYHLFDKA 219 (330)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEE--EEeCChhH-hhhhhhccCCHHHHHh--cCCEEEEeCCCcHHHHHHHhHH
Confidence 457999999 9999999999999999999 77776532 1122334458999988 8999999999664 23333332
Q ss_pred HHcCC---CEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 137 MEAEL---DLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 137 ie~GI---k~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
.-..+ ..+|+++-|--+ |...|.++-+.
T Consensus 220 ~l~~mk~gavlIN~aRG~~v-d~~aL~~aL~~ 250 (330)
T PRK12480 220 MFDHVKKGAILVNAARGAVI-NTPDLIAAVND 250 (330)
T ss_pred HHhcCCCCcEEEEcCCcccc-CHHHHHHHHHc
Confidence 22222 257775666555 44444444433
No 101
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.04 E-value=0.0031 Score=59.11 Aligned_cols=102 Identities=9% Similarity=-0.001 Sum_probs=68.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-------EecC--ccccccHHHHHhcc-CCcEEEEeeChH-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-------EHLG--LPVFNSVAEAKAET-KANASVIYVPPP- 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-------~i~G--vPVy~Sv~ea~~~~-~~DvaVdfVpp~- 127 (182)
.+|.|+|. |.||+.++..+.+.|.+|. +.|.....- ...| +-.+++++|+.+.. ++|++++.+|+.
T Consensus 2 ~~IgvIGL-G~MG~~lA~nL~~~G~~V~--v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~ 78 (470)
T PTZ00142 2 SDIGLIGL-AVMGQNLALNIASRGFKIS--VYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGE 78 (470)
T ss_pred CEEEEEeE-hHHHHHHHHHHHHCCCeEE--EEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChH
Confidence 46999998 9999999999999999888 555543210 0114 33688999998743 589888887666
Q ss_pred HHHHHHHHHHHc---CCCEEEEeCCCCCHHHHHHHHHHhc
Q 030169 128 FAAAAIMEAMEA---ELDLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 128 av~~a~~eAie~---GIk~VV~iTeG~~~eD~~~l~~~ak 164 (182)
.+.+++++.+.. | +.|+-.+++.+..-.....++.+
T Consensus 79 ~v~~vi~~l~~~L~~g-~iIID~gn~~~~dt~~r~~~l~~ 117 (470)
T PTZ00142 79 AVDETIDNLLPLLEKG-DIIIDGGNEWYLNTERRIKRCEE 117 (470)
T ss_pred HHHHHHHHHHhhCCCC-CEEEECCCCCHHHHHHHHHHHHH
Confidence 555665554432 3 34555466666655555555543
No 102
>PRK06436 glycerate dehydrogenase; Provisional
Probab=97.03 E-value=0.0033 Score=55.67 Aligned_cols=100 Identities=13% Similarity=0.079 Sum_probs=68.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCc-cccccHHHHHhccCCcEEEEeeChHHHH-HHHH-
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGL-PVFNSVAEAKAETKANASVIYVPPPFAA-AAIM- 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~Gv-PVy~Sv~ea~~~~~~DvaVdfVpp~av~-~a~~- 134 (182)
..+|.|+|. |++|+.+++.+..+|++|+ ++|+.... .++ +.+.+++|+.+ ++|++++.+|-...- ..+.
T Consensus 122 gktvgIiG~-G~IG~~vA~~l~afG~~V~--~~~r~~~~---~~~~~~~~~l~ell~--~aDiv~~~lp~t~~T~~li~~ 193 (303)
T PRK06436 122 NKSLGILGY-GGIGRRVALLAKAFGMNIY--AYTRSYVN---DGISSIYMEPEDIMK--KSDFVLISLPLTDETRGMINS 193 (303)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE--EECCCCcc---cCcccccCCHHHHHh--hCCEEEECCCCCchhhcCcCH
Confidence 466999999 9999999999989999999 88876422 233 34789999998 799999999965433 2322
Q ss_pred HHHHc-C-CCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 135 EAMEA-E-LDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 135 eAie~-G-Ik~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
+.++. + =..+|+++.|=.+ |...|.++.++-
T Consensus 194 ~~l~~mk~ga~lIN~sRG~~v-d~~aL~~aL~~g 226 (303)
T PRK06436 194 KMLSLFRKGLAIINVARADVV-DKNDMLNFLRNH 226 (303)
T ss_pred HHHhcCCCCeEEEECCCcccc-CHHHHHHHHHcC
Confidence 22222 1 1357775666555 555555554433
No 103
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=97.02 E-value=0.00066 Score=58.55 Aligned_cols=83 Identities=18% Similarity=0.187 Sum_probs=59.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEee----------ChH-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYV----------PPP- 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfV----------pp~- 127 (182)
|||+|.|++|-.|+.+.+.+.+.|.+++ +.+... .++.-.+.+++.+++.+||++|... .|.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~--~~~r~~-----~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~ 73 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVI--ATSRSD-----LDLTDPEAVAKLLEAFKPDVVINCAAYTNVDACEKNPEE 73 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEE--EESTTC-----S-TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEE--EeCchh-----cCCCCHHHHHHHHHHhCCCeEeccceeecHHhhhhChhh
Confidence 6999999999999999999999888888 555542 2244455678888877899999885 332
Q ss_pred -------HHHHHHHHHHHcCCCEEEEeC
Q 030169 128 -------FAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 128 -------av~~a~~eAie~GIk~VV~iT 148 (182)
.+..+++.|.+.|++.|..-|
T Consensus 74 a~~iN~~~~~~la~~~~~~~~~li~~ST 101 (286)
T PF04321_consen 74 AYAINVDATKNLAEACKERGARLIHIST 101 (286)
T ss_dssp HHHHHTHHHHHHHHHHHHCT-EEEEEEE
T ss_pred hHHHhhHHHHHHHHHHHHcCCcEEEeec
Confidence 334577888899999998755
No 104
>PLN02712 arogenate dehydrogenase
Probab=97.01 E-value=0.0016 Score=63.25 Aligned_cols=78 Identities=13% Similarity=0.232 Sum_probs=61.1
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--ecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
+.+||.|+|+ |.||+.+++.+.+.|.+|+ ++++...... ..|+..+.+.+|+.+. .+|++++.+|+....++++
T Consensus 368 ~~~kIgIIGl-G~mG~slA~~L~~~G~~V~--~~dr~~~~~~a~~~Gv~~~~~~~el~~~-~aDvVILavP~~~~~~vi~ 443 (667)
T PLN02712 368 SKLKIAIVGF-GNFGQFLAKTMVKQGHTVL--AYSRSDYSDEAQKLGVSYFSDADDLCEE-HPEVILLCTSILSTEKVLK 443 (667)
T ss_pred CCCEEEEEec-CHHHHHHHHHHHHCcCEEE--EEECChHHHHHHHcCCeEeCCHHHHHhc-CCCEEEECCChHHHHHHHH
Confidence 5588999997 9999999999999898888 6666532111 2366678888887652 4899999999999999888
Q ss_pred HHHH
Q 030169 135 EAME 138 (182)
Q Consensus 135 eAie 138 (182)
+...
T Consensus 444 ~l~~ 447 (667)
T PLN02712 444 SLPF 447 (667)
T ss_pred HHHH
Confidence 8764
No 105
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.01 E-value=0.0029 Score=55.22 Aligned_cols=91 Identities=12% Similarity=0.100 Sum_probs=63.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC--------C--CeE-e------cCccccccHHHHHhccCCcEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK--------G--GTE-H------LGLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~--------~--G~~-i------~GvPVy~Sv~ea~~~~~~DvaV 121 (182)
+||.|+|+ |.||..+...+.+.|-+|. .+++.. . +.. . .+++++.+.+++.. .++|+++
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~~V~--l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~Dlii 76 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKISVN--LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLS-DNATCII 76 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCeEE--EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHh-CCCCEEE
Confidence 47999999 9999999999998885555 333321 0 101 1 13446677777652 1689999
Q ss_pred EeeChHHHHHHHHHHHH-c-C-CCEEEEeCCCCCH
Q 030169 122 IYVPPPFAAAAIMEAME-A-E-LDLVVCITEGIPQ 153 (182)
Q Consensus 122 dfVpp~av~~a~~eAie-~-G-Ik~VV~iTeG~~~ 153 (182)
++||+....+++++... . + -..|+..+-|+..
T Consensus 77 iavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 77 LAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred EEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 99999999999998775 3 2 2246667999955
No 106
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=96.99 E-value=0.0035 Score=57.19 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=65.8
Q ss_pred CceEEEEccCCCCchhhhHHHHH---hCCceEEeeccC--CCCCeEecCccccccHHH---HHhccCCcEEEEeeChH--
Q 030169 58 NTRVICQGITGKNGTFHTEQAIE---YGTKMVVGGVTP--KKGGTEHLGLPVFNSVAE---AKAETKANASVIYVPPP-- 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~---~g~~IV~AgVdp--~~~G~~i~GvPVy~Sv~e---a~~~~~~DvaVdfVpp~-- 127 (182)
..|++|+|+ |..|..+.+.+.+ +|.+++ |-+|. .+.++. .|+||+.+.++ ..+++++|.+++..|..
T Consensus 128 ~~rvLIiGa-g~~~~~l~~~L~~~~~~g~~vv-G~idd~~~~~~~~-~gvpVlg~~~dl~~~i~~~~vd~ViIA~p~~~~ 204 (451)
T TIGR03023 128 LRRVLIVGA-GELGRRLAERLARNPELGYRVV-GFFDDRPDARTGV-RGVPVLGKLDDLEELIREGEVDEVYIALPLAAE 204 (451)
T ss_pred CCcEEEEeC-CHHHHHHHHHHHhCccCCcEEE-EEEeCCCcccccc-CCCCccCCHHHHHHHHHhcCCCEEEEeeCcccH
Confidence 367999998 9999999888764 458898 76654 343434 79999988555 45667899999999874
Q ss_pred -HHHHHHHHHHHcCCCEEEE
Q 030169 128 -FAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 128 -av~~a~~eAie~GIk~VV~ 146 (182)
...+.+++|-+.|++..+.
T Consensus 205 ~~~~~ll~~~~~~gv~V~vv 224 (451)
T TIGR03023 205 DRILELLDALEDLTVDVRLV 224 (451)
T ss_pred HHHHHHHHHHHhcCCEEEEe
Confidence 4567888888889987765
No 107
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.99 E-value=0.0024 Score=57.56 Aligned_cols=85 Identities=19% Similarity=0.138 Sum_probs=64.8
Q ss_pred CCceEEEEccCCCCchhhhHHHHH--hC-CceEEeeccCCCCCeEec----CccccccHHHHH-hccCCcEEEEeeChHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIE--YG-TKMVVGGVTPKKGGTEHL----GLPVFNSVAEAK-AETKANASVIYVPPPF 128 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~--~g-~~IV~AgVdp~~~G~~i~----GvPVy~Sv~ea~-~~~~~DvaVdfVpp~a 128 (182)
+..||+|+|+||--|+++.+.+.+ +. .++. .-......|+.+. ++++. ++++.. + ++|+++...|+..
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~-~laS~~saG~~~~~~~~~~~v~-~~~~~~~~--~~Dvvf~a~p~~~ 78 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELY-ALASEESAGETLRFGGKSVTVQ-DAAEFDWS--QAQLAFFVAGREA 78 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEE-EEEccCcCCceEEECCcceEEE-eCchhhcc--CCCEEEECCCHHH
Confidence 467899999999999999999998 33 7777 4444445565542 34444 444432 3 6899999999999
Q ss_pred HHHHHHHHHHcCCCEEE
Q 030169 129 AAAAIMEAMEAELDLVV 145 (182)
Q Consensus 129 v~~a~~eAie~GIk~VV 145 (182)
+.+.+.++.++|+++|=
T Consensus 79 s~~~~~~~~~~g~~VID 95 (336)
T PRK08040 79 SAAYAEEATNAGCLVID 95 (336)
T ss_pred HHHHHHHHHHCCCEEEE
Confidence 99999999999997653
No 108
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.96 E-value=0.00038 Score=56.28 Aligned_cols=102 Identities=18% Similarity=0.226 Sum_probs=65.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChHH-----H
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPF-----A 129 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-----v 129 (182)
..+|.|+|+ |+.|+.+++.+..+|++|+ ++||.....+ ..++ -+.+++|+.+ .+|++++..|-.. .
T Consensus 36 g~tvgIiG~-G~IG~~vA~~l~~fG~~V~--~~d~~~~~~~~~~~~~~-~~~~l~ell~--~aDiv~~~~plt~~T~~li 109 (178)
T PF02826_consen 36 GKTVGIIGY-GRIGRAVARRLKAFGMRVI--GYDRSPKPEEGADEFGV-EYVSLDELLA--QADIVSLHLPLTPETRGLI 109 (178)
T ss_dssp TSEEEEEST-SHHHHHHHHHHHHTT-EEE--EEESSCHHHHHHHHTTE-EESSHHHHHH--H-SEEEE-SSSSTTTTTSB
T ss_pred CCEEEEEEE-cCCcCeEeeeeecCCceeE--EecccCChhhhcccccc-eeeehhhhcc--hhhhhhhhhccccccceee
Confidence 467999999 9999999999999999999 8888874322 2244 5679999999 7999999999432 2
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 130 AAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 130 ~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
.+.....++.|. .+|+++-|=-+ |.+.|.++-+.-.
T Consensus 110 ~~~~l~~mk~ga-~lvN~aRG~~v-de~aL~~aL~~g~ 145 (178)
T PF02826_consen 110 NAEFLAKMKPGA-VLVNVARGELV-DEDALLDALESGK 145 (178)
T ss_dssp SHHHHHTSTTTE-EEEESSSGGGB--HHHHHHHHHTTS
T ss_pred eeeeeeccccce-EEEeccchhhh-hhhHHHHHHhhcc
Confidence 222222333232 57775655433 4444444444333
No 109
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.95 E-value=0.0018 Score=57.48 Aligned_cols=95 Identities=20% Similarity=0.159 Sum_probs=65.3
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC---------------CeEe-cCccccccHHHHHhccCCcE
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG---------------GTEH-LGLPVFNSVAEAKAETKANA 119 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~---------------G~~i-~GvPVy~Sv~ea~~~~~~Dv 119 (182)
.+.+||.|+|+ |.||..++..+.+.| .++.-..++... +... ..+.+.++.+++.+ ++|+
T Consensus 5 ~~~mkI~IiGa-Ga~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~--~aDl 80 (341)
T PRK12439 5 KREPKVVVLGG-GSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAAN--CADV 80 (341)
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHh--cCCE
Confidence 34589999999 999999999888877 443012222110 1001 12345667777777 7899
Q ss_pred EEEeeChHHHHHHHHHHHHc-CC-CEEEEeCCCCCHH
Q 030169 120 SVIYVPPPFAAAAIMEAMEA-EL-DLVVCITEGIPQH 154 (182)
Q Consensus 120 aVdfVpp~av~~a~~eAie~-GI-k~VV~iTeG~~~e 154 (182)
+++.+|+....+++++.... +- ..++.++-|+...
T Consensus 81 Vilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~ 117 (341)
T PRK12439 81 VVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQG 117 (341)
T ss_pred EEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCC
Confidence 99999999999998887654 22 2466778999864
No 110
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.94 E-value=0.0019 Score=55.72 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=64.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--------------------------ecCccccccHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--------------------------HLGLPVFNSVAEAK 112 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--------------------------i~GvPVy~Sv~ea~ 112 (182)
.+|.|+|+ |.||..++..+...|.+|+ .+|+....-+ ..+.-.+.+-.++.
T Consensus 5 ~~V~vIG~-G~mG~~iA~~l~~~G~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T PLN02545 5 KKVGVVGA-GQMGSGIAQLAAAAGMDVW--LLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEEL 81 (295)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCeEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHh
Confidence 57999999 9999999999999998888 6665542110 00112233333445
Q ss_pred hccCCcEEEEeeC--hHHHHHHHHHHHHc-CCCEEE-EeCCCCCHHHHHHHHH
Q 030169 113 AETKANASVIYVP--PPFAAAAIMEAMEA-ELDLVV-CITEGIPQHDMVINFT 161 (182)
Q Consensus 113 ~~~~~DvaVdfVp--p~av~~a~~eAie~-GIk~VV-~iTeG~~~eD~~~l~~ 161 (182)
+ ++|+++..+| +..-..+..+..+. .-..++ ..|.+++..++.+...
T Consensus 82 ~--~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~ 132 (295)
T PLN02545 82 R--DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQ 132 (295)
T ss_pred C--CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcC
Confidence 5 7999999999 66666666554432 222344 3589999888766543
No 111
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=96.94 E-value=0.004 Score=56.76 Aligned_cols=87 Identities=18% Similarity=0.294 Sum_probs=66.3
Q ss_pred CceEEEEccCCCCchhhhHHHHH---hCCceEEeeccCCCC-CeEecCccccccHHH---HHhccCCcEEEEeeChHH--
Q 030169 58 NTRVICQGITGKNGTFHTEQAIE---YGTKMVVGGVTPKKG-GTEHLGLPVFNSVAE---AKAETKANASVIYVPPPF-- 128 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~---~g~~IV~AgVdp~~~-G~~i~GvPVy~Sv~e---a~~~~~~DvaVdfVpp~a-- 128 (182)
..|++|+|+ |..|..+.+.+.+ .|.+++ |-+|.... +..+.|+||+.++++ ..+++++|.+++..|...
T Consensus 125 ~~rvLIvGa-g~~a~~l~~~L~~~~~~g~~vv-G~idd~~~~~~~i~g~pVlg~~~~l~~~i~~~~id~ViIa~p~~~~~ 202 (445)
T TIGR03025 125 LRRVLIVGT-GEAARELAAALSRNPDLGYRVV-GFVDDRPSDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIALPLSEEA 202 (445)
T ss_pred CCcEEEEEC-CHHHHHHHHHHhhCccCCeEEE-EEEeCCcccccccCCCcccCCHHHHHHHHHhCCCCEEEEecCcccHH
Confidence 467999998 9999999888763 458899 76775432 235779999988655 456678999999887643
Q ss_pred -HHHHHHHHHHcCCCEEEE
Q 030169 129 -AAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 129 -v~~a~~eAie~GIk~VV~ 146 (182)
..+.+++|-+.|++..+.
T Consensus 203 ~~~~ll~~~~~~gv~V~~v 221 (445)
T TIGR03025 203 RILELLLQLRDLGVDVRLV 221 (445)
T ss_pred HHHHHHHHHHhcCCEEEEe
Confidence 457888999999987665
No 112
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.92 E-value=0.0031 Score=57.19 Aligned_cols=85 Identities=12% Similarity=0.053 Sum_probs=63.5
Q ss_pred CCceEEEEccCCCCchhhhHHHH-HhCCc---eEEeeccCCCCCeEec----CccccccHHHHHhccCCcEEEEeeChHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAI-EYGTK---MVVGGVTPKKGGTEHL----GLPVFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~-~~g~~---IV~AgVdp~~~G~~i~----GvPVy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
+..||.|+|+||--|+.+.+.+. +..++ +. ........|+.+. .+.+.+.-.+..+ ++|+++...|...
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~-~~aS~~saGk~~~~~~~~l~v~~~~~~~~~--~~Divf~a~~~~~ 80 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVT-LLSSKRSAGKTVQFKGREIIIQEAKINSFE--GVDIAFFSAGGEV 80 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEE-EEECcccCCCCeeeCCcceEEEeCCHHHhc--CCCEEEECCChHH
Confidence 45789999999999999999998 56676 65 4445555565442 3444433223334 7999999999999
Q ss_pred HHHHHHHHHHcCCCEE
Q 030169 129 AAAAIMEAMEAELDLV 144 (182)
Q Consensus 129 v~~a~~eAie~GIk~V 144 (182)
..+.+..+.++|.++|
T Consensus 81 s~~~~~~~~~~G~~VI 96 (347)
T PRK06728 81 SRQFVNQAVSSGAIVI 96 (347)
T ss_pred HHHHHHHHHHCCCEEE
Confidence 9999999999997666
No 113
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.90 E-value=0.0033 Score=57.19 Aligned_cols=102 Identities=17% Similarity=0.196 Sum_probs=69.1
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC---------CceEEeeccCCCCCe-------------E-ec------Ccccccc
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG---------TKMVVGGVTPKKGGT-------------E-HL------GLPVFNS 107 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g---------~~IV~AgVdp~~~G~-------------~-i~------GvPVy~S 107 (182)
..+||.|.|+ |.+|++++..+-+.+ ..++ +-++...++ . .. ++.+.++
T Consensus 10 ~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw--~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsd 86 (365)
T PTZ00345 10 GPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMW--VLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSD 86 (365)
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEE--EecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecC
Confidence 3478999999 999999999887654 2344 444321000 0 11 3334566
Q ss_pred HHHHHhccCCcEEEEeeChHHHHHHHHHHHH--c--CCCEEEEeCCCCCHHHH--HHHHHHh
Q 030169 108 VAEAKAETKANASVIYVPPPFAAAAIMEAME--A--ELDLVVCITEGIPQHDM--VINFTRV 163 (182)
Q Consensus 108 v~ea~~~~~~DvaVdfVpp~av~~a~~eAie--~--GIk~VV~iTeG~~~eD~--~~l~~~a 163 (182)
++++++ +.|++++.|||....+++.+... . .-..+|.++.|+..++- ..+.+..
T Consensus 87 l~eav~--~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi 146 (365)
T PTZ00345 87 LKEAVE--DADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVI 146 (365)
T ss_pred HHHHHh--cCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHH
Confidence 888888 89999999999999999999865 2 12256767999986653 3344443
No 114
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=96.90 E-value=0.0042 Score=53.93 Aligned_cols=86 Identities=21% Similarity=0.130 Sum_probs=62.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccc------cHHHHHhccCCcEEEEeeChHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFN------SVAEAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~------Sv~ea~~~~~~DvaVdfVpp~av 129 (182)
+||+|.|+||- |+.+++.+.+.|.+++ +-+.-....+. ..+.||.. ++.+.+.++++|++||.++|-+.
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~-~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~ 78 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEIL-VTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHPFAA 78 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEE-EEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHHHH
Confidence 58999999995 9999999999998888 43322222211 22456653 26667777789999999999875
Q ss_pred H---HHHHHHHHcCCCEEEE
Q 030169 130 A---AAIMEAMEAELDLVVC 146 (182)
Q Consensus 130 ~---~a~~eAie~GIk~VV~ 146 (182)
. .+.+-|.+.||+.+=.
T Consensus 79 ~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 79 QITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHHHHHHHHhCCcEEEE
Confidence 3 6677777889988743
No 115
>PRK06545 prephenate dehydrogenase; Validated
Probab=96.89 E-value=0.0038 Score=55.83 Aligned_cols=100 Identities=20% Similarity=0.204 Sum_probs=70.6
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-ecCccc----cccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-HLGLPV----FNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-i~GvPV----y~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
+|.|+|. |.||..+++.+.+.|.++.+-+.++...... ..++.+ ..+++++.+ ++|++++.+|+....+++.
T Consensus 2 ~I~iIG~-GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~aDlVilavP~~~~~~vl~ 78 (359)
T PRK06545 2 TVLIVGL-GLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAA--EADLIVLAVPVDATAALLA 78 (359)
T ss_pred eEEEEEe-CHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhc--CCCEEEEeCCHHHHHHHHH
Confidence 6899998 9999999999999886555236666542110 112333 345677766 7999999999999988888
Q ss_pred HHHHc--CCCEEEEeCCCCCHHHHHHHHHH
Q 030169 135 EAMEA--ELDLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~~~eD~~~l~~~ 162 (182)
+.... .-..+|.-..+++..-...+.++
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~ 108 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEAL 108 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHh
Confidence 77642 33345555788888777777766
No 116
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=96.89 E-value=0.0024 Score=57.21 Aligned_cols=81 Identities=17% Similarity=0.107 Sum_probs=56.8
Q ss_pred eEEEEccCCCCchhhhHHHHHhC---CceEEeeccCCCCCeEec--C--ccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYG---TKMVVGGVTPKKGGTEHL--G--LPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g---~~IV~AgVdp~~~G~~i~--G--vPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
||+|+|++|.-|+.+++.+.+.+ .+++ ........|+.+. | +.+.+.-.+..+ ++|+++..+|.....+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~-~~as~~~~g~~~~~~~~~~~~~~~~~~~~~--~~D~v~~a~g~~~s~~~ 77 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLV-LLASDRSAGRKVTFKGKELEVNEAKIESFE--GIDIALFSAGGSVSKEF 77 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEE-EEeccccCCCeeeeCCeeEEEEeCChHHhc--CCCEEEECCCHHHHHHH
Confidence 58999999999999999988855 4444 2223334444332 2 222222122234 79999999999999999
Q ss_pred HHHHHHcCCCE
Q 030169 133 IMEAMEAELDL 143 (182)
Q Consensus 133 ~~eAie~GIk~ 143 (182)
+..++++|.++
T Consensus 78 a~~~~~~G~~V 88 (339)
T TIGR01296 78 APKAAKCGAIV 88 (339)
T ss_pred HHHHHHCCCEE
Confidence 99999999853
No 117
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=96.88 E-value=0.0017 Score=61.23 Aligned_cols=93 Identities=13% Similarity=0.224 Sum_probs=71.0
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCC-----CCCeEe---cCccccccHHHHHhccCCcEEEEeeChHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK-----KGGTEH---LGLPVFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~-----~~G~~i---~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
+..+|+|+|+ |.+|+.++.+|...|.+++ -|+-++ ..+.+. .|+++ .+++|+.+ +.|++++.+|-..
T Consensus 35 kgKtIaIIGy-GSqG~AqAlNLrdSGvnVv-vglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~--~ADvVviLlPDt~ 109 (487)
T PRK05225 35 KGKKIVIVGC-GAQGLNQGLNMRDSGLDIS-YALRKEAIAEKRASWRKATENGFKV-GTYEELIP--QADLVINLTPDKQ 109 (487)
T ss_pred CCCEEEEEcc-CHHHHHHhCCCccccceeE-EeccccccccccchHHHHHhcCCcc-CCHHHHHH--hCCEEEEcCChHH
Confidence 3578999999 9999999999999999888 555443 222122 57887 57999988 8999999999995
Q ss_pred HHHHHHHHHHcCCC--EEEEeCCCCCHHH
Q 030169 129 AAAAIMEAMEAELD--LVVCITEGIPQHD 155 (182)
Q Consensus 129 v~~a~~eAie~GIk--~VV~iTeG~~~eD 155 (182)
+..+.+.+....+ ..++++-||..+.
T Consensus 110 -q~~v~~~i~p~LK~Ga~L~fsHGFni~~ 137 (487)
T PRK05225 110 -HSDVVRAVQPLMKQGAALGYSHGFNIVE 137 (487)
T ss_pred -HHHHHHHHHhhCCCCCEEEecCCceeee
Confidence 6666666666554 4888899988663
No 118
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.86 E-value=0.0073 Score=52.09 Aligned_cols=88 Identities=17% Similarity=0.151 Sum_probs=58.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccC-CCCCe-EecCcccc-------ccHHHHHhccCCcEEEEeeChH--
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTP-KKGGT-EHLGLPVF-------NSVAEAKAETKANASVIYVPPP-- 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp-~~~G~-~i~GvPVy-------~Sv~ea~~~~~~DvaVdfVpp~-- 127 (182)
|||+|.|++|..|+.+++.+.+.|.+|. +.+-. .+... ...++.++ .++.++++ ++|+++..++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~-~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~--g~d~Vi~~~~~~~~ 77 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVR-CLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFK--GVTAIIDASTSRPS 77 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEE-EEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHC--CCCEEEECCCCCCC
Confidence 4799999999999999999999999988 55422 11100 01123222 23566666 789988765421
Q ss_pred -----------HHHHHHHHHHHcCCCEEEEeCC
Q 030169 128 -----------FAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 128 -----------av~~a~~eAie~GIk~VV~iTe 149 (182)
....+++.|.++|++.+|.+++
T Consensus 78 ~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 78 DLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred CccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 2355677777889988876554
No 119
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.86 E-value=0.0033 Score=54.53 Aligned_cols=99 Identities=23% Similarity=0.237 Sum_probs=66.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCC--ceEEeeccCCCCCeE---ecCc--cccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGT--KMVVGGVTPKKGGTE---HLGL--PVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~--~IV~AgVdp~~~G~~---i~Gv--PVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
++|.|+|+ |.||..++..+.+.|. +|+ ++++...-.+ ..|+ .+..+.+++.+ ++|++++.+|+....+
T Consensus 7 ~~I~IIG~-G~mG~sla~~l~~~g~~~~V~--~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~--~aDvViiavp~~~~~~ 81 (307)
T PRK07502 7 DRVALIGI-GLIGSSLARAIRRLGLAGEIV--GADRSAETRARARELGLGDRVTTSAAEAVK--GADLVILCVPVGASGA 81 (307)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCcEEE--EEECCHHHHHHHHhCCCCceecCCHHHHhc--CCCEEEECCCHHHHHH
Confidence 57999997 9999999999998884 555 6666532100 0122 34567777776 7999999999998888
Q ss_pred HHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHH
Q 030169 132 AIMEAMEA-ELDLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 132 a~~eAie~-GIk~VV~iTeG~~~eD~~~l~~~ 162 (182)
++++.... .-..+|....++...-+..+.+.
T Consensus 82 v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~ 113 (307)
T PRK07502 82 VAAEIAPHLKPGAIVTDVGSVKASVIAAMAPH 113 (307)
T ss_pred HHHHHHhhCCCCCEEEeCccchHHHHHHHHHh
Confidence 77765533 22334444666666655555544
No 120
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=96.84 E-value=0.005 Score=56.30 Aligned_cols=86 Identities=16% Similarity=0.239 Sum_probs=63.7
Q ss_pred CceEEEEccCCCCchhhhHHHH---HhCCceEEeeccCC--CCCeEecCcccccc--HHHHHhccCCcEEEEeeC---hH
Q 030169 58 NTRVICQGITGKNGTFHTEQAI---EYGTKMVVGGVTPK--KGGTEHLGLPVFNS--VAEAKAETKANASVIYVP---PP 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~---~~g~~IV~AgVdp~--~~G~~i~GvPVy~S--v~ea~~~~~~DvaVdfVp---p~ 127 (182)
..|++|+|+ |..|..+.+.+. +.|.+++ |-+|.. ..|..+.|+||+.+ +.+..+++++|.+++..| ++
T Consensus 125 ~rrvlIiGa-g~~~~~l~~~l~~~~~~g~~vv-Gfidd~~~~~~~~i~g~pVlg~~~l~~~i~~~~id~ViIAip~~~~~ 202 (456)
T TIGR03022 125 GRPAVIIGA-GQNAAILYRALQSNPQLGLRPL-AVVDTDPAASGRLLTGLPVVGADDALRLYARTRYAYVIVAMPGTQAE 202 (456)
T ss_pred CceEEEEeC-CHHHHHHHHHHhhCccCCcEEE-EEEeCCccccccccCCCcccChhHHHHHHHhCCCCEEEEecCCccHH
Confidence 357999998 899999988876 3468899 777654 44456789999987 334455578999888887 34
Q ss_pred HHHHHHHHHHHcCC-CEEE
Q 030169 128 FAAAAIMEAMEAEL-DLVV 145 (182)
Q Consensus 128 av~~a~~eAie~GI-k~VV 145 (182)
...+.++.|.+.|+ +..+
T Consensus 203 ~~~~ll~~l~~~~v~~V~~ 221 (456)
T TIGR03022 203 DMARLVRKLGALHFRNVLI 221 (456)
T ss_pred HHHHHHHHHHhCCCeEEEE
Confidence 56678888888888 4433
No 121
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.84 E-value=0.0036 Score=53.52 Aligned_cols=93 Identities=17% Similarity=0.191 Sum_probs=61.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCC--ceEEeeccCCCCCeE---ecCcc-ccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGT--KMVVGGVTPKKGGTE---HLGLP-VFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~--~IV~AgVdp~~~G~~---i~GvP-Vy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
+||.|+|. |.||..++..+.+.|. +|+ ++|+.....+ ..|+. .+.+.+++. ++|++++.+|+..+.+.
T Consensus 1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~--~~d~~~~~~~~~~~~g~~~~~~~~~~~~---~aD~Vilavp~~~~~~~ 74 (275)
T PRK08507 1 MKIGIIGL-GLMGGSLGLALKEKGLISKVY--GYDHNELHLKKALELGLVDEIVSFEELK---KCDVIFLAIPVDAIIEI 74 (275)
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCCEEE--EEcCCHHHHHHHHHCCCCcccCCHHHHh---cCCEEEEeCcHHHHHHH
Confidence 47999997 9999999999998884 565 6777542110 12432 345677743 48999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHH
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDMVI 158 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~~~ 158 (182)
+.+.....-..+|+ ..|....++.+
T Consensus 75 ~~~l~~l~~~~iv~-d~gs~k~~i~~ 99 (275)
T PRK08507 75 LPKLLDIKENTTII-DLGSTKAKIIE 99 (275)
T ss_pred HHHHhccCCCCEEE-ECccchHHHHH
Confidence 88865522122443 34444444443
No 122
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=96.83 E-value=0.0061 Score=56.85 Aligned_cols=85 Identities=13% Similarity=0.055 Sum_probs=63.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHh---CCceEEeeccCCCCCeEecCccccccHHHH---HhccCCcEEEEeeChH---HH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVVGGVTPKKGGTEHLGLPVFNSVAEA---KAETKANASVIYVPPP---FA 129 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~---g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea---~~~~~~DvaVdfVpp~---av 129 (182)
.+++|+|+ |..|+.+.+.+.+. |.+++ |-+|....++.+.|+||+.+.+++ .+++.+|+ ++..|.. .-
T Consensus 147 rrvLIIGa-G~~a~~l~~~L~~~~~~g~~vV-GfIDd~~~~~~i~gvPVlg~~d~l~~~~~~~~v~v-IIAip~~~~~~r 223 (476)
T PRK15204 147 KKTIILGS-GQNARGAYSALQSEEMMGFDVI-AFFDTDASDAEINMLPVIKDTEIIWDLNRTGDVHY-ILAYEYTELEKT 223 (476)
T ss_pred CeEEEEEC-CHHHHHHHHHHHhCccCCcEEE-EEEcCCccccccCCCcccCCHHHHHHHHHhCCCcE-EEEeCcCcHHHH
Confidence 57999998 99999998887743 78999 889876555568899999996643 33345675 6777732 45
Q ss_pred HHHHHHHHHcCCCEEEE
Q 030169 130 AAAIMEAMEAELDLVVC 146 (182)
Q Consensus 130 ~~a~~eAie~GIk~VV~ 146 (182)
.+.++++.+.|++.|..
T Consensus 224 ~~il~~l~~~gv~~V~v 240 (476)
T PRK15204 224 HFWLRELSKHHCRSVTV 240 (476)
T ss_pred HHHHHHHhhcCCeEEEE
Confidence 57888888889875443
No 123
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=96.82 E-value=0.0033 Score=58.73 Aligned_cols=95 Identities=22% Similarity=0.246 Sum_probs=66.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE----------------------ecC-ccccccHHHHHhcc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE----------------------HLG-LPVFNSVAEAKAET 115 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~----------------------i~G-vPVy~Sv~ea~~~~ 115 (182)
+||.|+|+ |.||..++..+...|.+|+ ..|+.....+ ..| +.+.++++++.+
T Consensus 5 ~kIavIG~-G~MG~~iA~~la~~G~~V~--v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~-- 79 (495)
T PRK07531 5 MKAACIGG-GVIGGGWAARFLLAGIDVA--VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVA-- 79 (495)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEE--EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhc--
Confidence 57999998 9999999999999998887 5555421100 012 567778888888
Q ss_pred CCcEEEEeeChHH-HHHHHHHHHHcCCC---EEEEeCCCCCHHHHHH
Q 030169 116 KANASVIYVPPPF-AAAAIMEAMEAELD---LVVCITEGIPQHDMVI 158 (182)
Q Consensus 116 ~~DvaVdfVpp~a-v~~a~~eAie~GIk---~VV~iTeG~~~eD~~~ 158 (182)
++|+++..+|+.. +++.+..-++...+ .|...|.|++..++.+
T Consensus 80 ~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~ 126 (495)
T PRK07531 80 GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE 126 (495)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 8999999999986 33433222333222 5666789999876654
No 124
>PLN02712 arogenate dehydrogenase
Probab=96.81 E-value=0.0073 Score=58.82 Aligned_cols=77 Identities=12% Similarity=0.207 Sum_probs=59.8
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--EecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
+.++|.|+|+ |+||+.+++.+.+.|.+|+ ++++...-. ...|+..+.+.+|+... ++|++++.+|+....++++
T Consensus 51 ~~~kIgIIG~-G~mG~slA~~L~~~G~~V~--~~dr~~~~~~A~~~Gv~~~~d~~e~~~~-~aDvViLavP~~~~~~vl~ 126 (667)
T PLN02712 51 TQLKIAIIGF-GNYGQFLAKTLISQGHTVL--AHSRSDHSLAARSLGVSFFLDPHDLCER-HPDVILLCTSIISTENVLK 126 (667)
T ss_pred CCCEEEEEcc-CHHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHcCCEEeCCHHHHhhc-CCCEEEEcCCHHHHHHHHH
Confidence 3468999997 9999999999999998888 566653111 12367778888886542 5899999999999888888
Q ss_pred HHH
Q 030169 135 EAM 137 (182)
Q Consensus 135 eAi 137 (182)
+..
T Consensus 127 ~l~ 129 (667)
T PLN02712 127 SLP 129 (667)
T ss_pred hhh
Confidence 754
No 125
>PRK06444 prephenate dehydrogenase; Provisional
Probab=96.80 E-value=0.0027 Score=53.14 Aligned_cols=51 Identities=22% Similarity=0.132 Sum_probs=39.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eA 136 (182)
+||.|+|.+|+||+..++.+.+.|.++. . + ++|++++.+|.....+.+++.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~-~------------------------~--~~DlVilavPv~~~~~~i~~~ 51 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY-I------------------------K--KADHAFLSVPIDAALNYIESY 51 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE-E------------------------C--CCCEEEEeCCHHHHHHHHHHh
Confidence 4899999999999999999999997754 1 2 566666666666666666553
No 126
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.80 E-value=0.0051 Score=54.83 Aligned_cols=105 Identities=15% Similarity=0.194 Sum_probs=71.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--ecCccccccHHHHHhccCCcEEEEeeChHH-HHHHH-
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI- 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~- 133 (182)
..+|.|+|+ |++|+.+++.+..+|++|+ ++|+...... ..+++ +.+++|+.+ +.|++++.+|-.. ....+
T Consensus 150 gktvgIiG~-G~IG~~vA~~l~~~G~~V~--~~d~~~~~~~~~~~~~~-~~~l~ell~--~aDiV~l~lP~t~~T~~~i~ 223 (333)
T PRK13243 150 GKTIGIIGF-GRIGQAVARRAKGFGMRIL--YYSRTRKPEAEKELGAE-YRPLEELLR--ESDFVSLHVPLTKETYHMIN 223 (333)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE--EECCCCChhhHHHcCCE-ecCHHHHHh--hCCEEEEeCCCChHHhhccC
Confidence 467999999 9999999999999999988 7887643211 12443 568999988 7999999999654 33333
Q ss_pred HHHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhcccchh
Q 030169 134 MEAMEA-EL-DLVVCITEGIPQHDMVINFTRVNILLVA 169 (182)
Q Consensus 134 ~eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ipv~ 169 (182)
.+.++. +- ..+|+++.|-.+ |...|.++.++-.++
T Consensus 224 ~~~~~~mk~ga~lIN~aRg~~v-d~~aL~~aL~~g~i~ 260 (333)
T PRK13243 224 EERLKLMKPTAILVNTARGKVV-DTKALVKALKEGWIA 260 (333)
T ss_pred HHHHhcCCCCeEEEECcCchhc-CHHHHHHHHHcCCeE
Confidence 233333 11 346775666555 556666655554443
No 127
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.80 E-value=0.013 Score=53.42 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=57.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eA 136 (182)
..+|.|+|.+|.||+.+++.+.+. +.+|+ |+|+...+ ..+.+++.+ ++|++++.+|.....+.+++.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~--g~D~~d~~--------~~~~~~~v~--~aDlVilavPv~~~~~~l~~l 71 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVI--GHDPADPG--------SLDPATLLQ--RADVLIFSAPIRHTAALIEEY 71 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEE--EEcCCccc--------cCCHHHHhc--CCCEEEEeCCHHHHHHHHHHH
Confidence 357999999999999999999864 77888 89985422 235677777 799999999999999999998
Q ss_pred HHc
Q 030169 137 MEA 139 (182)
Q Consensus 137 ie~ 139 (182)
...
T Consensus 72 ~~~ 74 (370)
T PRK08818 72 VAL 74 (370)
T ss_pred hhh
Confidence 864
No 128
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=96.75 E-value=0.0043 Score=55.67 Aligned_cols=85 Identities=14% Similarity=0.029 Sum_probs=63.8
Q ss_pred eEEEEccCCCCchhhhHHHHHhC----CceEEeeccCCCC-----------------------CeE--e--cCccccc--
Q 030169 60 RVICQGITGKNGTFHTEQAIEYG----TKMVVGGVTPKKG-----------------------GTE--H--LGLPVFN-- 106 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g----~~IV~AgVdp~~~-----------------------G~~--i--~GvPVy~-- 106 (182)
||.|.|| |+.|+.+.+.+.+.+ ++|+ +-.+.... |+. + ..++++.
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vv-aInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVV-ALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSP 78 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEE-EEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcC
Confidence 6899999 999999999888753 8888 64432221 100 1 1355663
Q ss_pred cHHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 107 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 107 Sv~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
++++.+ .+.++|+++..+++....+.+..++++|.+.|++
T Consensus 79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~ 119 (325)
T TIGR01532 79 TPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLF 119 (325)
T ss_pred ChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEe
Confidence 466654 3458999999999999999999999999998888
No 129
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.75 E-value=0.011 Score=52.54 Aligned_cols=99 Identities=9% Similarity=0.092 Sum_probs=66.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCcc---ccccHHHHHhccCCcEEEEeeChHHH-HHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLP---VFNSVAEAKAETKANASVIYVPPPFA-AAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvP---Vy~Sv~ea~~~~~~DvaVdfVpp~av-~~a~ 133 (182)
..+|.|+|+ |++|+.+++.+..+|+++. ++++.... ..++- -+.+++|+++ ++|++++.+|-... ...+
T Consensus 136 g~tvgIvG~-G~IG~~vA~~l~afG~~V~--~~~~~~~~--~~~~~~~~~~~~l~e~l~--~aDvvv~~lPlt~~T~~li 208 (312)
T PRK15469 136 DFTIGILGA-GVLGSKVAQSLQTWGFPLR--CWSRSRKS--WPGVQSFAGREELSAFLS--QTRVLINLLPNTPETVGII 208 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE--EEeCCCCC--CCCceeecccccHHHHHh--cCCEEEECCCCCHHHHHHh
Confidence 467999999 9999999999999999999 78875422 11211 2457889888 89999999996544 3333
Q ss_pred HH-HHHc---CCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 134 ME-AMEA---ELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 134 ~e-Aie~---GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
.+ .++. | ..+|+++-|--+ |.+.|.++-+.
T Consensus 209 ~~~~l~~mk~g-a~lIN~aRG~vV-de~aL~~aL~~ 242 (312)
T PRK15469 209 NQQLLEQLPDG-AYLLNLARGVHV-VEDDLLAALDS 242 (312)
T ss_pred HHHHHhcCCCC-cEEEECCCcccc-CHHHHHHHHhc
Confidence 32 2222 3 357786666555 44444444433
No 130
>PLN00016 RNA-binding protein; Provisional
Probab=96.74 E-value=0.01 Score=52.62 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=58.9
Q ss_pred ceEEEE----ccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--------------ecCcc-ccccHHH---HHhccC
Q 030169 59 TRVICQ----GITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--------------HLGLP-VFNSVAE---AKAETK 116 (182)
Q Consensus 59 trViVv----G~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--------------i~GvP-Vy~Sv~e---a~~~~~ 116 (182)
+||+|. |++|..|+.+++.+.+.|.+|+ +++....... ..++. +..++.+ ++...+
T Consensus 53 ~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~--~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~~~ 130 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIGFYLAKELVKAGHEVT--LFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAGAG 130 (378)
T ss_pred ceEEEEeccCCCceeEhHHHHHHHHHCCCEEE--EEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhccCC
Confidence 679999 9999999999999999998888 4443321100 01232 2334443 443347
Q ss_pred CcEEEEeeC--hHHHHHHHHHHHHcCCCEEEEeC
Q 030169 117 ANASVIYVP--PPFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 117 ~DvaVdfVp--p~av~~a~~eAie~GIk~VV~iT 148 (182)
+|+++.... ...+..+++.|.+.|++.+|.++
T Consensus 131 ~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~S 164 (378)
T PLN00016 131 FDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCS 164 (378)
T ss_pred ccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 899988754 33466777778889998776544
No 131
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.73 E-value=0.007 Score=53.48 Aligned_cols=100 Identities=13% Similarity=0.058 Sum_probs=65.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHH-HHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFA-AAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av-~~a~~eA 136 (182)
..+|.|+|+ |+.|+.+++.+..+|++|+ ++||.... ...+++ |.+++|+++ +.|++++.+|-... ...+.+.
T Consensus 145 gktvGIiG~-G~IG~~vA~~~~~fgm~V~--~~d~~~~~-~~~~~~-~~~l~ell~--~sDvv~lh~Plt~~T~~li~~~ 217 (311)
T PRK08410 145 GKKWGIIGL-GTIGKRVAKIAQAFGAKVV--YYSTSGKN-KNEEYE-RVSLEELLK--TSDIISIHAPLNEKTKNLIAYK 217 (311)
T ss_pred CCEEEEECC-CHHHHHHHHHHhhcCCEEE--EECCCccc-cccCce-eecHHHHhh--cCCEEEEeCCCCchhhcccCHH
Confidence 356999999 9999999999999999999 88886422 223454 668999998 79999999995432 2222222
Q ss_pred -HHc-CC-CEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 137 -MEA-EL-DLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 137 -ie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
++. +- ..+|+++-|=-+ |.+.|.++-+.
T Consensus 218 ~~~~Mk~~a~lIN~aRG~vV-De~AL~~AL~~ 248 (311)
T PRK08410 218 ELKLLKDGAILINVGRGGIV-NEKDLAKALDE 248 (311)
T ss_pred HHHhCCCCeEEEECCCcccc-CHHHHHHHHHc
Confidence 222 21 235664444333 44444444433
No 132
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=96.72 E-value=0.0068 Score=54.61 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=66.4
Q ss_pred eEEEEccCCCCchhhhHHHHHhC--------CceEEeec-------------cCCCCCeE-ecC------ccccccHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYG--------TKMVVGGV-------------TPKKGGTE-HLG------LPVFNSVAEA 111 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g--------~~IV~AgV-------------dp~~~G~~-i~G------vPVy~Sv~ea 111 (182)
||.|.|+ |.+|++++..+-+.| -+|..=+. +..+.... ..| +...++++++
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 5899999 999999999887644 33330022 11111101 112 3366789998
Q ss_pred HhccCCcEEEEeeChHHHHHHHHHHHHc---CCCEEEEeCCCCCHH--HHHHHHHHhc
Q 030169 112 KAETKANASVIYVPPPFAAAAIMEAMEA---ELDLVVCITEGIPQH--DMVINFTRVN 164 (182)
Q Consensus 112 ~~~~~~DvaVdfVpp~av~~a~~eAie~---GIk~VV~iTeG~~~e--D~~~l~~~ak 164 (182)
++ +.|++++.+|+....+++.+.-.. +. .+|.+|.|+..+ ....+-+..+
T Consensus 80 l~--~ADiIIlAVPs~~i~~vl~~l~~~l~~~~-~iVs~tKGie~~~~~~~~~se~i~ 134 (342)
T TIGR03376 80 AK--GADILVFVIPHQFLEGICKQLKGHVKPNA-RAISCIKGLEVSKDGVKLLSDIIE 134 (342)
T ss_pred Hh--cCCEEEEECChHHHHHHHHHHHhhcCCCC-EEEEEeCCcccCCCcCccHHHHHH
Confidence 88 899999999999999988886543 33 456669999877 4444444443
No 133
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=96.70 E-value=0.0035 Score=56.57 Aligned_cols=85 Identities=19% Similarity=0.138 Sum_probs=66.8
Q ss_pred EEEEccCCCCchhhhHHHHH-hCCceEEeeccCCCCC--------------------e--EecCccccccHHHHHhccCC
Q 030169 61 VICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKKGG--------------------T--EHLGLPVFNSVAEAKAETKA 117 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~~G--------------------~--~i~GvPVy~Sv~ea~~~~~~ 117 (182)
|.|.|+ |+.|+.+++.+.+ .++++| |-.|+.... . +-.+++++.+++|+++ ++
T Consensus 1 VaInG~-GrIGr~varav~~~~d~elV-aVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~--~v 76 (333)
T TIGR01546 1 VGVNGY-GTIGKRVADAVTKQDDMKLV-GVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLE--KV 76 (333)
T ss_pred CEEECC-cHHHHHHHHHHhhCCCcEEE-EEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhh--cC
Confidence 578999 9999999998764 458999 655533210 0 1135888889999987 79
Q ss_pred cEEEEeeChHHHHHHHHHHHHcCCCEEEEeCC
Q 030169 118 NASVIYVPPPFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 118 DvaVdfVpp~av~~a~~eAie~GIk~VV~iTe 149 (182)
|++++.+|........+..++.|.+.|+.-.+
T Consensus 77 DiVve~Tp~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 77 DIVVDATPGGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred CEEEECCCCCCChhhHHHHHhCCcCEEEECCC
Confidence 99999999999999999999999999987333
No 134
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=96.69 E-value=0.009 Score=53.17 Aligned_cols=93 Identities=10% Similarity=0.072 Sum_probs=60.4
Q ss_pred eeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe----------cCccccccHHHHHhccCCcEEEE
Q 030169 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH----------LGLPVFNSVAEAKAETKANASVI 122 (182)
Q Consensus 53 ~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i----------~GvPVy~Sv~ea~~~~~~DvaVd 122 (182)
.+++.++||+|.|++|-.|+.+++.+.+.|.+|+ +++........ .++.-..++.++++ ++|+++.
T Consensus 16 ~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~--~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~Vih 91 (370)
T PLN02695 16 YWPSEKLRICITGAGGFIASHIARRLKAEGHYII--ASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTK--GVDHVFN 91 (370)
T ss_pred CCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEE--EEEeccccccccccccceEEECCCCCHHHHHHHHh--CCCEEEE
Confidence 3566789999999999999999999999998888 55533211100 12211122334444 6899888
Q ss_pred eeCh-------------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 123 YVPP-------------------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 123 fVpp-------------------~av~~a~~eAie~GIk~VV~iTe 149 (182)
+... .....+++.|.+++++.+|.+++
T Consensus 92 ~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 92 LAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred cccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 8621 12345667777889988776543
No 135
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=96.69 E-value=0.0049 Score=56.43 Aligned_cols=99 Identities=18% Similarity=0.150 Sum_probs=66.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH-----HHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-----AAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-----v~~a 132 (182)
..+|.|+|+ |++|+.+++.+..+|++++ +.||.... ...--.|.+++|+++ ++|++++-+|-.. ....
T Consensus 116 gktvGIIG~-G~IG~~vA~~l~a~G~~V~--~~dp~~~~--~~~~~~~~~L~ell~--~sDiI~lh~PLt~~g~~~T~~l 188 (378)
T PRK15438 116 DRTVGIVGV-GNVGRRLQARLEALGIKTL--LCDPPRAD--RGDEGDFRSLDELVQ--EADILTFHTPLFKDGPYKTLHL 188 (378)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE--EECCcccc--cccccccCCHHHHHh--hCCEEEEeCCCCCCcccccccc
Confidence 567999999 9999999999999999999 88886532 111124789999998 7999999999543 4444
Q ss_pred HHHHHHcCC---CEEEEeCCCCCHHHHHHHHHHhc
Q 030169 133 IMEAMEAEL---DLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 133 ~~eAie~GI---k~VV~iTeG~~~eD~~~l~~~ak 164 (182)
+.+..=... ..+|+.+-| ++-|...|.++-+
T Consensus 189 i~~~~l~~mk~gailIN~aRG-~vVDe~AL~~aL~ 222 (378)
T PRK15438 189 ADEKLIRSLKPGAILINACRG-AVVDNTALLTCLN 222 (378)
T ss_pred cCHHHHhcCCCCcEEEECCCc-hhcCHHHHHHHHH
Confidence 433322222 346774444 4445555555443
No 136
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=96.69 E-value=0.0042 Score=58.58 Aligned_cols=105 Identities=19% Similarity=0.261 Sum_probs=71.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--EecCccccccHHHHHhccCCcEEEEeeChHH-HHHHH-H
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI-M 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~-~ 134 (182)
.+|.|+|. |++|+.+++.+..+|++|+ ++||..... ...|++.+++++|+.+ ++|++++.+|-.. ...++ .
T Consensus 139 ktvgIiG~-G~IG~~vA~~l~~fG~~V~--~~d~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~lPlt~~T~~li~~ 213 (525)
T TIGR01327 139 KTLGVIGL-GRIGSIVAKRAKAFGMKVL--AYDPYISPERAEQLGVELVDDLDELLA--RADFITVHTPLTPETRGLIGA 213 (525)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCEEE--EECCCCChhHHHhcCCEEcCCHHHHHh--hCCEEEEccCCChhhccCcCH
Confidence 56999999 9999999999999999999 888853221 1235665678999998 7999999999653 33333 2
Q ss_pred HHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhcccchh
Q 030169 135 EAMEA-EL-DLVVCITEGIPQHDMVINFTRVNILLVA 169 (182)
Q Consensus 135 eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ipv~ 169 (182)
+.++. +- ..+|+++.|=- -|...|.++-+.-.++
T Consensus 214 ~~l~~mk~ga~lIN~aRG~~-vde~aL~~aL~~g~i~ 249 (525)
T TIGR01327 214 EELAKMKKGVIIVNCARGGI-IDEAALYEALEEGHVR 249 (525)
T ss_pred HHHhcCCCCeEEEEcCCCce-eCHHHHHHHHHcCCee
Confidence 33332 22 24666455544 4556666655554443
No 137
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=96.69 E-value=0.016 Score=52.33 Aligned_cols=91 Identities=19% Similarity=0.225 Sum_probs=59.0
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-----------EecCcc-------ccccHHHHHhcc--
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-----------EHLGLP-------VFNSVAEAKAET-- 115 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-----------~i~GvP-------Vy~Sv~ea~~~~-- 115 (182)
...++|+|.|++|..|+.+++.+.+.|.+|+ +.+ ....+. ...++. =.++++++.+..
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~-~l~-R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 135 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVV-AVA-REKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGD 135 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEE-echhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCC
Confidence 3457899999999999999999999999988 543 222110 011221 123355555533
Q ss_pred CCcEEEEeeCh-------------HHHHHHHHHHHHcCCCEEEEeC
Q 030169 116 KANASVIYVPP-------------PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 116 ~~DvaVdfVpp-------------~av~~a~~eAie~GIk~VV~iT 148 (182)
++|+++....+ .....+++.|.+.|++.+|.++
T Consensus 136 ~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iS 181 (390)
T PLN02657 136 PVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLS 181 (390)
T ss_pred CCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 58998875432 2245677778888998776655
No 138
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.68 E-value=0.0047 Score=56.54 Aligned_cols=98 Identities=15% Similarity=0.112 Sum_probs=66.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH-----HHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-----AAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-----v~~a 132 (182)
..+|.|+|+ |++|+.+++.+..+|++++ +.||.... ..+..-|.+++|+.+ ++|++++.+|-.. ....
T Consensus 116 gktvGIIG~-G~IG~~va~~l~a~G~~V~--~~Dp~~~~--~~~~~~~~~l~ell~--~aDiV~lh~Plt~~g~~~T~~l 188 (381)
T PRK00257 116 ERTYGVVGA-GHVGGRLVRVLRGLGWKVL--VCDPPRQE--AEGDGDFVSLERILE--ECDVISLHTPLTKEGEHPTRHL 188 (381)
T ss_pred cCEEEEECC-CHHHHHHHHHHHHCCCEEE--EECCcccc--cccCccccCHHHHHh--hCCEEEEeCcCCCCcccccccc
Confidence 456999999 9999999999999999999 78886532 222234678999988 7999999999642 3444
Q ss_pred HHHHHHcCC---CEEEEeCCCCCHHHHHHHHHH
Q 030169 133 IMEAMEAEL---DLVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 133 ~~eAie~GI---k~VV~iTeG~~~eD~~~l~~~ 162 (182)
+.+..=... ..+|+.+-|=.+.+...+.++
T Consensus 189 i~~~~l~~mk~gailIN~aRG~vVde~AL~~aL 221 (381)
T PRK00257 189 LDEAFLASLRPGAWLINASRGAVVDNQALREAL 221 (381)
T ss_pred CCHHHHhcCCCCeEEEECCCCcccCHHHHHHHH
Confidence 333222222 346775555555444444443
No 139
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.67 E-value=0.0043 Score=58.04 Aligned_cols=102 Identities=10% Similarity=-0.017 Sum_probs=68.6
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE----e----cCccccccHHHHHhcc-CCcEEEEeeCh-HHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE----H----LGLPVFNSVAEAKAET-KANASVIYVPP-PFA 129 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~----i----~GvPVy~Sv~ea~~~~-~~DvaVdfVpp-~av 129 (182)
+|.++|. |.||..++..+.+.|.+|+ +.|+...-.+ . .++..+++++|+.+.. ++|++++.+|+ ..+
T Consensus 1 ~IG~IGL-G~MG~~mA~nL~~~G~~V~--v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v 77 (467)
T TIGR00873 1 DIGVIGL-AVMGSNLALNMADHGFTVS--VYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPV 77 (467)
T ss_pred CEEEEee-HHHHHHHHHHHHhcCCeEE--EEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHH
Confidence 3788998 9999999999999999888 5555331110 1 1367888999987643 68999999999 566
Q ss_pred HHHHHHHHHc--CCCEEEEeCCCCCHHHHHHHHHHhc
Q 030169 130 AAAIMEAMEA--ELDLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 130 ~~a~~eAie~--GIk~VV~iTeG~~~eD~~~l~~~ak 164 (182)
.+++++.+.. .=+.||-.++..+........++.+
T Consensus 78 ~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~ 114 (467)
T TIGR00873 78 DAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKA 114 (467)
T ss_pred HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHh
Confidence 6666655543 1135555455566555555555543
No 140
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=96.67 E-value=0.0026 Score=57.34 Aligned_cols=85 Identities=13% Similarity=0.138 Sum_probs=64.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeE--------------------------ec--Cccccc--c
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTE--------------------------HL--GLPVFN--S 107 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~--------------------------i~--GvPVy~--S 107 (182)
+||.|.|+ ||||+.+.+.+.+. +++|+ |+.+|...-+. ++ .++|+. +
T Consensus 3 ikigInG~-GRiGr~v~r~~~~~~~~~iv-aind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~ 80 (334)
T PRK08955 3 IKVGINGF-GRIGRLALRAAWDWPELEFV-QINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKA 80 (334)
T ss_pred eEEEEECc-CHHHHHHHHHHHhCCCcEEE-EecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCC
Confidence 68999999 99999999988865 49999 88875422110 11 344552 3
Q ss_pred HHHHHhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 108 VAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 108 v~ea~~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
+++..=. ++|+++..+......+.+..++++|.+.|++
T Consensus 81 ~~~~~w~-gvDiVle~tG~~~s~~~a~~hl~aGak~V~i 118 (334)
T PRK08955 81 IADTDWS-GCDVVIEASGVMKTKALLQAYLDQGVKRVVV 118 (334)
T ss_pred hhhCCcc-CCCEEEEccchhhcHHHHHHHHHCCCEEEEE
Confidence 5554322 7999999999999999999999999998887
No 141
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=96.65 E-value=0.013 Score=49.95 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=62.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCC-------CCCeEe--------cCccccccHHHHHhccCCcEEEEe
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK-------KGGTEH--------LGLPVFNSVAEAKAETKANASVIY 123 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~-------~~G~~i--------~GvPVy~Sv~ea~~~~~~DvaVdf 123 (182)
+||+|+|+ |.+|..++..+.+.|.++. .+++. ..|-.+ ...++.++.+++.+ ++|++++.
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~~V~--~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vila 75 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGRDVT--FLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTG--PFDLVILA 75 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCCceE--EEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccC--CCCEEEEE
Confidence 57999999 9999999999988887766 44441 111111 11223455666545 78999999
Q ss_pred eChHHHHHHHHHHHHc-C-CCEEEEeCCCCCHHH
Q 030169 124 VPPPFAAAAIMEAMEA-E-LDLVVCITEGIPQHD 155 (182)
Q Consensus 124 Vpp~av~~a~~eAie~-G-Ik~VV~iTeG~~~eD 155 (182)
+++....+++++.... + =..|+.+.-|+..++
T Consensus 76 vk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~ 109 (305)
T PRK12921 76 VKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLE 109 (305)
T ss_pred ecccCHHHHHHHHHhhcCCCCEEEEeeCCCChHH
Confidence 9999888888777653 2 234555678986443
No 142
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=96.65 E-value=0.0042 Score=58.69 Aligned_cols=107 Identities=11% Similarity=-0.024 Sum_probs=73.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--e-----cCc---cccccHHHHHhcc-CCcEEEEeeChH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--H-----LGL---PVFNSVAEAKAET-KANASVIYVPPP 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i-----~Gv---PVy~Sv~ea~~~~-~~DvaVdfVpp~ 127 (182)
++|.++|. |.||+.++.++.+.|++++ ..|+....-+ . .|. -+++|++|+.+.. .+|+++..+|..
T Consensus 7 ~~IG~IGL-G~MG~~mA~nL~~~G~~V~--V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~ 83 (493)
T PLN02350 7 SRIGLAGL-AVMGQNLALNIAEKGFPIS--VYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAG 83 (493)
T ss_pred CCEEEEee-HHHHHHHHHHHHhCCCeEE--EECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCc
Confidence 46999998 9999999999999999888 5554321111 0 132 2788999998842 499999999988
Q ss_pred HHHHHH-HHHHHc-CCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 128 FAAAAI-MEAMEA-ELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 128 av~~a~-~eAie~-GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
.+.+.+ +..+.. .-..+++-++-...++..++.+..++-.+
T Consensus 84 ~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi 126 (493)
T PLN02350 84 APVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGL 126 (493)
T ss_pred HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 766554 444433 11224444677777888888777655444
No 143
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.64 E-value=0.0086 Score=54.59 Aligned_cols=100 Identities=13% Similarity=0.101 Sum_probs=69.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeEec-Ccc---------ccc-cHHHHHhccCCcEEEEeeC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTEHL-GLP---------VFN-SVAEAKAETKANASVIYVP 125 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~i~-GvP---------Vy~-Sv~ea~~~~~~DvaVdfVp 125 (182)
..||.|+|++|--|.++.+.+... +.++. ........|+.+. -.| ... +.+++ ...++|+++..+|
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~-~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~-~~~~~DvvFlalP 79 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELI-LISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKI-ELDECDVVFLALP 79 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEE-EeechhhcCCchHHhCcccccccccccccCChhhh-hcccCCEEEEecC
Confidence 468999999999999999988854 58866 4444443554432 111 111 12232 3336999999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Q 030169 126 PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~ 160 (182)
+..+.+.+.+.++.|++ |+=.+.-|..+|.+.-.
T Consensus 80 hg~s~~~v~~l~~~g~~-VIDLSadfR~~d~~~ye 113 (349)
T COG0002 80 HGVSAELVPELLEAGCK-VIDLSADFRLKDPEVYE 113 (349)
T ss_pred chhHHHHHHHHHhCCCe-EEECCcccccCCHHHHH
Confidence 99999999999999999 44447666666544433
No 144
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.62 E-value=0.014 Score=49.60 Aligned_cols=91 Identities=15% Similarity=0.166 Sum_probs=61.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-E--ecCc-----------cccccHHHHHhccCCcEEEEee
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-E--HLGL-----------PVFNSVAEAKAETKANASVIYV 124 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~--i~Gv-----------PVy~Sv~ea~~~~~~DvaVdfV 124 (182)
+||+|+|+ |.+|..++..+.+.|.++. .+++...-. . ..|+ .+.++.+++ + ++|++++.+
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~~V~--~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGHDVT--LVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--PQDLVILAV 74 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEE--EEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--CCCEEEEec
Confidence 57999999 9999999999998887766 444421000 0 0133 234455554 4 799999999
Q ss_pred ChHHHHHHHHHHHHc-CC-CEEEEeCCCCCHHH
Q 030169 125 PPPFAAAAIMEAMEA-EL-DLVVCITEGIPQHD 155 (182)
Q Consensus 125 pp~av~~a~~eAie~-GI-k~VV~iTeG~~~eD 155 (182)
++..+.+++...... +- ..||.+.-|+..++
T Consensus 75 k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~ 107 (304)
T PRK06522 75 KAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLE 107 (304)
T ss_pred ccccHHHHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence 999888888776653 22 25666688987444
No 145
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=96.59 E-value=0.011 Score=52.34 Aligned_cols=106 Identities=20% Similarity=0.180 Sum_probs=78.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--ecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eA 136 (182)
+||.++|. |.||.-.++.+.+.|.++.+-..+|.+.-+. ..|..++.|..|+.+ +.|++|..+|.......+...
T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~--~aDvVitmv~~~~~V~~V~~g 77 (286)
T COG2084 1 MKIAFIGL-GIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAA--EADVVITMLPDDAAVRAVLFG 77 (286)
T ss_pred CeEEEEcC-chhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHH--hCCEEEEecCCHHHHHHHHhC
Confidence 47999998 9999999999999998888334555442111 238999999999998 899999999988777666543
Q ss_pred ---HHcC--CCEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 137 ---MEAE--LDLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 137 ---ie~G--Ik~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
+-.+ ...+|+--+=++.++..++.+.++.--
T Consensus 78 ~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G 113 (286)
T COG2084 78 ENGLLEGLKPGAIVIDMSTISPETARELAAALAAKG 113 (286)
T ss_pred ccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcC
Confidence 2221 223444456688999999988887653
No 146
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.49 E-value=0.0075 Score=51.66 Aligned_cols=95 Identities=8% Similarity=0.099 Sum_probs=63.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---------------e------------cCccccccHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---------------H------------LGLPVFNSVAEA 111 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---------------i------------~GvPVy~Sv~ea 111 (182)
.||.|+|+ |.||..++..+...|.+++ .+|+....-+ . .++.+..+.++
T Consensus 4 ~kI~VIG~-G~mG~~ia~~la~~g~~V~--~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~- 79 (282)
T PRK05808 4 QKIGVIGA-GTMGNGIAQVCAVAGYDVV--MVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD- 79 (282)
T ss_pred cEEEEEcc-CHHHHHHHHHHHHCCCceE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-
Confidence 47999999 9999999999998898888 5554331110 0 03344555654
Q ss_pred HhccCCcEEEEeeChHHH--HHHHHHHHHcCCC---EEEEeCCCCCHHHHHHHH
Q 030169 112 KAETKANASVIYVPPPFA--AAAIMEAMEAELD---LVVCITEGIPQHDMVINF 160 (182)
Q Consensus 112 ~~~~~~DvaVdfVpp~av--~~a~~eAie~GIk---~VV~iTeG~~~eD~~~l~ 160 (182)
.+ ++|++++.+|++.. .++..+ ++..++ .++..|.|++..++.+..
T Consensus 80 ~~--~aDlVi~av~e~~~~k~~~~~~-l~~~~~~~~il~s~ts~~~~~~la~~~ 130 (282)
T PRK05808 80 LK--DADLVIEAATENMDLKKKIFAQ-LDEIAKPEAILATNTSSLSITELAAAT 130 (282)
T ss_pred hc--cCCeeeecccccHHHHHHHHHH-HHhhCCCCcEEEECCCCCCHHHHHHhh
Confidence 44 79999999997555 455555 443332 233558899988776544
No 147
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=96.48 E-value=0.0095 Score=47.67 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=59.4
Q ss_pred ceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCCCCe--------EecC-------------------cccc--ccH
Q 030169 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKKGGT--------EHLG-------------------LPVF--NSV 108 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~~G~--------~i~G-------------------vPVy--~Sv 108 (182)
+||+|.|+ |+||+.+++.+.+ .+++++ +..++..... ..+| ++++ .++
T Consensus 1 ikv~I~G~-GriGr~v~~~~~~~~~~~lv-ai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p 78 (149)
T smart00846 1 IKVGINGF-GRIGRLVLRALLERPDIEVV-AINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDP 78 (149)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCEEE-EeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCCh
Confidence 47999999 9999999998774 569999 8777521110 0111 1222 224
Q ss_pred HHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 109 AEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 109 ~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
++++ .+.++|++++.+..-...+.+..-+++|.|.|+.
T Consensus 79 ~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkVii 117 (149)
T smart00846 79 ANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVII 117 (149)
T ss_pred HHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEe
Confidence 4433 3347899999977767777777888899999998
No 148
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=96.45 E-value=0.011 Score=49.36 Aligned_cols=80 Identities=19% Similarity=0.157 Sum_probs=56.4
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChH------------
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP------------ 127 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~------------ 127 (182)
||+|.|++|..|+.+++.+.+.|.+++ +++... .++.-..++.++++..++|+++.+....
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~--~~~r~~-----~d~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~ 73 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVV--ALTSSQ-----LDLTDPEALERLLRAIRPDAVVNTAAYTDVDGAESDPEKA 73 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEE--EeCCcc-----cCCCCHHHHHHHHHhCCCCEEEECCccccccccccCHHHH
Confidence 589999999999999999999898888 555432 2343445677777765689999876431
Q ss_pred ------HHHHHHHHHHHcCCCEEEE
Q 030169 128 ------FAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 128 ------av~~a~~eAie~GIk~VV~ 146 (182)
....+++.|.+.|.+.|..
T Consensus 74 ~~~n~~~~~~l~~~~~~~~~~~v~~ 98 (287)
T TIGR01214 74 FAVNALAPQNLARAAARHGARLVHI 98 (287)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 1344555666778766554
No 149
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.43 E-value=0.015 Score=53.47 Aligned_cols=104 Identities=14% Similarity=0.045 Sum_probs=69.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~eA 136 (182)
..+|.|+|+ |+.|+.+++.+..+|++|+ +.||.... ...++.-..+++|+.+ ..|++++-+|-.. ....+.+.
T Consensus 151 gktvGIiG~-G~IG~~vA~~~~~fGm~V~--~~d~~~~~-~~~~~~~~~~l~ell~--~sDiVslh~Plt~~T~~li~~~ 224 (409)
T PRK11790 151 GKTLGIVGY-GHIGTQLSVLAESLGMRVY--FYDIEDKL-PLGNARQVGSLEELLA--QSDVVSLHVPETPSTKNMIGAE 224 (409)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE--EECCCccc-ccCCceecCCHHHHHh--hCCEEEEcCCCChHHhhccCHH
Confidence 356999999 9999999999999999999 88886421 2223444568999999 7999999999644 33444332
Q ss_pred HHcCCC---EEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 137 MEAELD---LVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 137 ie~GIk---~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
.=..+| .+|+++-|--+ |...|.++-++-.+
T Consensus 225 ~l~~mk~ga~lIN~aRG~~v-de~aL~~aL~~g~i 258 (409)
T PRK11790 225 ELALMKPGAILINASRGTVV-DIDALADALKSGHL 258 (409)
T ss_pred HHhcCCCCeEEEECCCCccc-CHHHHHHHHHcCCc
Confidence 222222 46775555555 44445444444333
No 150
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.43 E-value=0.0055 Score=52.73 Aligned_cols=96 Identities=17% Similarity=0.094 Sum_probs=63.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---------------------------ecCccccccHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---------------------------HLGLPVFNSVAEA 111 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---------------------------i~GvPVy~Sv~ea 111 (182)
.||.|+|+ |.||..++..+.+.|.+|+ .+|+...--+ ...+....+++++
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 78 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGFQTT--LVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA 78 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCCcEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence 46999999 9999999999999898888 4554321100 0124456778888
Q ss_pred HhccCCcEEEEeeChHHHH--HHHHHHHHcCCC---EEEEeCCCCCHHHHHHHH
Q 030169 112 KAETKANASVIYVPPPFAA--AAIMEAMEAELD---LVVCITEGIPQHDMVINF 160 (182)
Q Consensus 112 ~~~~~~DvaVdfVpp~av~--~a~~eAie~GIk---~VV~iTeG~~~eD~~~l~ 160 (182)
.+ ++|+++..+|.+... .++.+ ++..++ .++.-|+.++..++.+..
T Consensus 79 ~~--~aD~Vi~avpe~~~~k~~~~~~-l~~~~~~~~il~~~tSt~~~~~l~~~~ 129 (288)
T PRK09260 79 VA--DADLVIEAVPEKLELKKAVFET-ADAHAPAECYIATNTSTMSPTEIASFT 129 (288)
T ss_pred hc--CCCEEEEeccCCHHHHHHHHHH-HHhhCCCCcEEEEcCCCCCHHHHHhhc
Confidence 87 899999999988642 33333 333332 232337889988765543
No 151
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.43 E-value=0.0064 Score=56.48 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=33.1
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK 94 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~ 94 (182)
.-.+.+.|+|+|++|+-|+.+++.+++.|+.+- |+|-...
T Consensus 75 ~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vr-a~VRd~~ 114 (411)
T KOG1203|consen 75 NSKKPTTVLVVGATGKVGRRIVKILLKRGFSVR-ALVRDEQ 114 (411)
T ss_pred CCCCCCeEEEecCCCchhHHHHHHHHHCCCeee-eeccChh
Confidence 344567799999999999999999999998888 7765543
No 152
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=96.41 E-value=0.01 Score=52.54 Aligned_cols=82 Identities=20% Similarity=0.151 Sum_probs=66.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEe---------------
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIY--------------- 123 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdf--------------- 123 (182)
|||+|.|++|.+|+.+.+.+. .+.+++ ..+... .++--.+++.++.++.+||++|-.
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~--a~~~~~-----~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~ 72 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVI--ATDRAE-----LDITDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPEL 72 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEE--eccCcc-----ccccChHHHHHHHHhhCCCEEEECccccccccccCCHHH
Confidence 569999999999999999888 557788 444433 457788889999998899999865
Q ss_pred ---eChHHHHHHHHHHHHcCCCEEEEeC
Q 030169 124 ---VPPPFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 124 ---Vpp~av~~a~~eAie~GIk~VV~iT 148 (182)
++...+..+++.|-+.|.++|-+-|
T Consensus 73 A~~vNa~~~~~lA~aa~~~ga~lVhiST 100 (281)
T COG1091 73 AFAVNATGAENLARAAAEVGARLVHIST 100 (281)
T ss_pred HHHhHHHHHHHHHHHHHHhCCeEEEeec
Confidence 4556677889999999999998744
No 153
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.41 E-value=0.0082 Score=56.69 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=69.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--EecCccccccHHHHHhccCCcEEEEeeChH-HHHHHH-
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI- 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~-av~~a~- 133 (182)
..+|.|+|+ |++|+.+++.+..+|++|+ ++||..... ...|+... +++|+.+ ++|++++.+|-. ....++
T Consensus 140 gktvgIiG~-G~IG~~vA~~l~~fG~~V~--~~d~~~~~~~~~~~g~~~~-~l~ell~--~aDiV~l~lP~t~~t~~li~ 213 (526)
T PRK13581 140 GKTLGIIGL-GRIGSEVAKRAKAFGMKVI--AYDPYISPERAAQLGVELV-SLDELLA--RADFITLHTPLTPETRGLIG 213 (526)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEE--EECCCCChhHHHhcCCEEE-cHHHHHh--hCCEEEEccCCChHhhcCcC
Confidence 466999999 9999999999999999999 888853211 12355544 8999988 799999999975 334443
Q ss_pred HHHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 134 MEAMEA-EL-DLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 134 ~eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
.+.++. +- ..+|+++-|=.+ |...|.++.+.-.+
T Consensus 214 ~~~l~~mk~ga~lIN~aRG~~v-de~aL~~aL~~g~i 249 (526)
T PRK13581 214 AEELAKMKPGVRIINCARGGII-DEAALAEALKSGKV 249 (526)
T ss_pred HHHHhcCCCCeEEEECCCCcee-CHHHHHHHHhcCCe
Confidence 222322 11 246665666555 55555555444333
No 154
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.40 E-value=0.016 Score=55.95 Aligned_cols=100 Identities=20% Similarity=0.172 Sum_probs=70.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCC--ceEEeeccCCCCCeE---ecCcc--ccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGT--KMVVGGVTPKKGGTE---HLGLP--VFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~--~IV~AgVdp~~~G~~---i~GvP--Vy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
.||.|+|+ |.||..+++.+.+.|. +|+ ++|+.....+ ..|+. ...+.+++++ ++|++++.+|+....+
T Consensus 4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~--~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~--~aDvVilavp~~~~~~ 78 (735)
T PRK14806 4 GRVVVIGL-GLIGGSFAKALRERGLAREVV--AVDRRAKSLELAVSLGVIDRGEEDLAEAVS--GADVIVLAVPVLAMEK 78 (735)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCCEEE--EEECChhHHHHHHHCCCCCcccCCHHHHhc--CCCEEEECCCHHHHHH
Confidence 67999997 9999999999998883 666 6777642211 12332 3456777777 7999999999999888
Q ss_pred HHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 132 AIMEAMEA-ELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 132 a~~eAie~-GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
++.+.... .-..+|....+++..-...+.+..
T Consensus 79 vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~ 111 (735)
T PRK14806 79 VLADLKPLLSEHAIVTDVGSTKGNVVDAARAVF 111 (735)
T ss_pred HHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhc
Confidence 88876653 223455547788866666666553
No 155
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=96.40 E-value=0.012 Score=52.74 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=58.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eA 136 (182)
..||.|+|++|--|+++.+.+.+.. ++++ +- .... ++.. ...++..+ ++|+++...|...+.+.+.++
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~-~~-~s~~-~~~~------~~~~~~~~--~~DvvFlalp~~~s~~~~~~~ 70 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELL-SI-PEAK-RKDA------AARRELLN--AADVAILCLPDDAAREAVALI 70 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEE-EE-ecCC-CCcc------cCchhhhc--CCCEEEECCCHHHHHHHHHHH
Confidence 4689999999999999999998665 8888 43 3222 2211 23334344 699999999999999999999
Q ss_pred HHcCCCEE
Q 030169 137 MEAELDLV 144 (182)
Q Consensus 137 ie~GIk~V 144 (182)
.+.|+++|
T Consensus 71 ~~~g~~VI 78 (313)
T PRK11863 71 DNPATRVI 78 (313)
T ss_pred HhCCCEEE
Confidence 99999765
No 156
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=96.39 E-value=0.012 Score=50.64 Aligned_cols=84 Identities=17% Similarity=0.106 Sum_probs=56.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeC----------hH-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVP----------PP- 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVp----------p~- 127 (182)
|||+|.|++|-.|+.+++.+.+.| +++ +++....- ...++.=...+++++++.++|+++-+.- |.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~--~~~~~~~~-~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~ 76 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLI--ALDVHSTD-YCGDFSNPEGVAETVRKIRPDVIVNAAAHTAVDKAESEPEF 76 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEE--Eecccccc-ccCCCCCHHHHHHHHHhcCCCEEEECCccCCcchhhcCHHH
Confidence 479999999999999999999888 777 55543211 1123433445667777667898885431 22
Q ss_pred -------HHHHHHHHHHHcCCCEEEE
Q 030169 128 -------FAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 128 -------av~~a~~eAie~GIk~VV~ 146 (182)
.+..+++.|.++|++.|..
T Consensus 77 ~~~~N~~~~~~l~~aa~~~g~~~v~~ 102 (299)
T PRK09987 77 AQLLNATSVEAIAKAANEVGAWVVHY 102 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 2345677777889876655
No 157
>PRK06932 glycerate dehydrogenase; Provisional
Probab=96.37 E-value=0.012 Score=52.02 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=65.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHHH-
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIME- 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~e- 135 (182)
..+|.|+|+ |+.|+.+++.+..+|++|+ ++++.... .. ..+ |.+++|+++ ..|++++.+|-.. ....+..
T Consensus 147 gktvgIiG~-G~IG~~va~~l~~fg~~V~--~~~~~~~~-~~-~~~-~~~l~ell~--~sDiv~l~~Plt~~T~~li~~~ 218 (314)
T PRK06932 147 GSTLGVFGK-GCLGTEVGRLAQALGMKVL--YAEHKGAS-VC-REG-YTPFEEVLK--QADIVTLHCPLTETTQNLINAE 218 (314)
T ss_pred CCEEEEECC-CHHHHHHHHHHhcCCCEEE--EECCCccc-cc-ccc-cCCHHHHHH--hCCEEEEcCCCChHHhcccCHH
Confidence 357999999 9999999999999999999 67875421 11 122 678999998 7999999999433 2233322
Q ss_pred HHHc-CC-CEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 136 AMEA-EL-DLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 136 Aie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
.++. +- ..+|+++-| ..-|.+.|.++-+.-.+
T Consensus 219 ~l~~mk~ga~lIN~aRG-~~Vde~AL~~aL~~g~i 252 (314)
T PRK06932 219 TLALMKPTAFLINTGRG-PLVDEQALLDALENGKI 252 (314)
T ss_pred HHHhCCCCeEEEECCCc-cccCHHHHHHHHHcCCc
Confidence 2222 11 235663433 33355555555444333
No 158
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.35 E-value=0.008 Score=51.77 Aligned_cols=96 Identities=14% Similarity=0.062 Sum_probs=63.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC--e--------------------------EecCccccccHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG--T--------------------------EHLGLPVFNSVAE 110 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G--~--------------------------~i~GvPVy~Sv~e 110 (182)
+||.|+|+ |.||..++..+...|.+|+ .+|+...- + ....+.+..++++
T Consensus 4 ~kIaViGa-G~mG~~iA~~la~~G~~V~--l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGA-GVLGSQIAFQTAFHGFDVT--IYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE 80 (287)
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCCeEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence 57999998 9999999999988898877 55543210 0 0123456778888
Q ss_pred HHhccCCcEEEEeeChH--HHHHHHHHHHHc-CCCEEE-EeCCCCCHHHHHHH
Q 030169 111 AKAETKANASVIYVPPP--FAAAAIMEAMEA-ELDLVV-CITEGIPQHDMVIN 159 (182)
Q Consensus 111 a~~~~~~DvaVdfVpp~--av~~a~~eAie~-GIk~VV-~iTeG~~~eD~~~l 159 (182)
+.+ ++|+++..+|.+ ...+++.+..+. .-+.++ .-|+.++..++.+.
T Consensus 81 a~~--~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~ 131 (287)
T PRK08293 81 AVK--DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEA 131 (287)
T ss_pred Hhc--CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhh
Confidence 887 899999999955 445555544332 112233 34778877665543
No 159
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=96.34 E-value=0.019 Score=53.34 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=63.3
Q ss_pred CceEEEEccCCCCchhhhHHHHH---hCCceEEeeccCCCCCeEecCccccccHHH---HHhccCCcEEEEeeCh---HH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIE---YGTKMVVGGVTPKKGGTEHLGLPVFNSVAE---AKAETKANASVIYVPP---PF 128 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~---~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~e---a~~~~~~DvaVdfVpp---~a 128 (182)
..|++|+|+ |..|..+.+.+.+ .|.+++ |-+|....+ -.++|++.++++ ..+++++|-+++..|. +.
T Consensus 143 ~rrVLIvGa-G~~g~~l~~~L~~~~~~g~~vV-GfiDdd~~~--g~~VpvlG~~~dL~~~v~~~~IdeViIAip~~~~~~ 218 (463)
T PRK10124 143 KRMVAVAGD-LPAGQMLLESFRNEPWLGFEVV-GVYHDPKPG--GVSNDWAGNLQQLVEDAKAGKIHNVYIAMSMCDGAR 218 (463)
T ss_pred CCcEEEEEC-CHHHHHHHHHHhcCccCCeEEE-EEEeCCccc--cCCCCcCCCHHHHHHHHHhCCCCEEEEeCCCcchHH
Confidence 357999998 9999999998874 368899 878755422 124566988655 4566789999999884 44
Q ss_pred HHHHHHHHHHcCCCEEEE
Q 030169 129 AAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 129 v~~a~~eAie~GIk~VV~ 146 (182)
..+++++|.+.|++..+.
T Consensus 219 l~ell~~~~~~~v~V~iv 236 (463)
T PRK10124 219 VKKLVRQLADTTCSVLLI 236 (463)
T ss_pred HHHHHHHHHHcCCeEEEe
Confidence 567788888889987665
No 160
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.32 E-value=0.017 Score=55.66 Aligned_cols=88 Identities=15% Similarity=0.215 Sum_probs=68.5
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCC--CCCeEecCcccccc--HHHHHhccCCcEEEEeeCh---H
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPK--KGGTEHLGLPVFNS--VAEAKAETKANASVIYVPP---P 127 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~--~~G~~i~GvPVy~S--v~ea~~~~~~DvaVdfVpp---~ 127 (182)
...++++|+|+ |..|..+.+.+...+ +.+| |-+|+. +.|.++.|+|||.+ +.++.+++.+|-+++..|. +
T Consensus 114 ~~~~r~lIiGA-G~ag~~l~r~~~~~~~~~pV-~fiDdd~~~~g~~i~Gv~V~g~~~i~~~v~~~~~~~iiiAips~~~~ 191 (588)
T COG1086 114 DNRIRLLIIGA-GSAGDLLLRALRRDPEYTPV-AFLDDDPDLTGMKIRGVPVLGRIEIERVVEELGIQLILIAIPSASQE 191 (588)
T ss_pred cCCCceEEEcC-chHHHHHHHHHHhCCCcceE-EEECCChhhcCCEEeceeeechhHHHHHHHHcCCceEEEecCCCCHH
Confidence 44588999999 999999999888544 8888 877654 67778899999999 5666777888988887774 5
Q ss_pred HHHHHHHHHHHcCCCEEE
Q 030169 128 FAAAAIMEAMEAELDLVV 145 (182)
Q Consensus 128 av~~a~~eAie~GIk~VV 145 (182)
...+..+.+-+.|++.=.
T Consensus 192 ~~~~i~~~l~~~~~~v~~ 209 (588)
T COG1086 192 ERRRILLRLARTGIAVRI 209 (588)
T ss_pred HHHHHHHHHHhcCCcEEe
Confidence 566777777788865533
No 161
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.30 E-value=0.013 Score=53.59 Aligned_cols=80 Identities=13% Similarity=0.049 Sum_probs=58.6
Q ss_pred ceEEEEccCCCCchhhhH-HHHHhCCc---eEEeeccCCCCCeEe---c--CccccccH-HHHHhccCCcEEEEeeChHH
Q 030169 59 TRVICQGITGKNGTFHTE-QAIEYGTK---MVVGGVTPKKGGTEH---L--GLPVFNSV-AEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k-~~~~~g~~---IV~AgVdp~~~G~~i---~--GvPVy~Sv-~ea~~~~~~DvaVdfVpp~a 128 (182)
++|+|+|+||--|+++.+ .+.+.+++ ++ . +.....|+.. . ...+++.. .+..+ ++|+++...|...
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~-~-~ss~~sg~~~~~f~g~~~~v~~~~~~~~~~--~~Divf~a~~~~~ 77 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPV-F-FSTSQAGGAAPSFGGKEGTLQDAFDIDALK--KLDIIITCQGGDY 77 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEE-E-ecchhhCCcccccCCCcceEEecCChhHhc--CCCEEEECCCHHH
Confidence 579999999999999999 55566776 77 4 4444444333 1 24455422 22234 6999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 030169 129 AAAAIMEAMEAELD 142 (182)
Q Consensus 129 v~~a~~eAie~GIk 142 (182)
+.+.+.++.++|.+
T Consensus 78 s~~~~~~~~~aG~~ 91 (369)
T PRK06598 78 TNEVYPKLRAAGWQ 91 (369)
T ss_pred HHHHHHHHHhCCCC
Confidence 99999999999987
No 162
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.30 E-value=0.015 Score=53.21 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=66.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCcccccc-HHHHHhc-------------cCCcEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNS-VAEAKAE-------------TKANASV 121 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~S-v~ea~~~-------------~~~DvaV 121 (182)
+||.|+|. |.||..++..+.+.|.+++ ++|....--+ ...+|++.. +++++.+ .++|+++
T Consensus 4 ~kI~VIGl-G~~G~~~A~~La~~G~~V~--~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvi 80 (415)
T PRK11064 4 ETISVIGL-GYIGLPTAAAFASRQKQVI--GVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFL 80 (415)
T ss_pred cEEEEECc-chhhHHHHHHHHhCCCEEE--EEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEE
Confidence 68999998 9999999999999999988 6665432111 135666544 5554321 1689999
Q ss_pred EeeCh----------HHHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHHH
Q 030169 122 IYVPP----------PFAAAAIMEAMEA-ELDLVVCITEGIPQHDMVINFT 161 (182)
Q Consensus 122 dfVpp----------~av~~a~~eAie~-GIk~VV~iTeG~~~eD~~~l~~ 161 (182)
+.+|. ..+.++++....+ .-..+|++.+-++..-..++.+
T Consensus 81 i~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~ 131 (415)
T PRK11064 81 IAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAE 131 (415)
T ss_pred EEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHH
Confidence 99997 4777776655554 2223555566666666666654
No 163
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.26 E-value=0.012 Score=50.72 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=61.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE------------e-----cC-------------ccccccH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE------------H-----LG-------------LPVFNSV 108 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~------------i-----~G-------------vPVy~Sv 108 (182)
.+|.|+|+ |.||..++..+...|.+|+ .+|+...--+ . .| +...++.
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~G~~V~--l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 80 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFARTGYDVT--IVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY 80 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhcCCeEE--EEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH
Confidence 57999999 9999999999999998888 5554431100 0 01 1122334
Q ss_pred HHHHhccCCcEEEEeeChHHH-HHHHHHHHHcCCC---EEEEeCCCCCHHHHHHHH
Q 030169 109 AEAKAETKANASVIYVPPPFA-AAAIMEAMEAELD---LVVCITEGIPQHDMVINF 160 (182)
Q Consensus 109 ~ea~~~~~~DvaVdfVpp~av-~~a~~eAie~GIk---~VV~iTeG~~~eD~~~l~ 160 (182)
++.+ ++|+++..+|+... +..+..-++.-++ .++..|.|++..++.+..
T Consensus 81 -~~~~--~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~ 133 (291)
T PRK06035 81 -ESLS--DADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATAL 133 (291)
T ss_pred -HHhC--CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhc
Confidence 3445 79999999998863 4433333444332 345557899888877544
No 164
>PLN02928 oxidoreductase family protein
Probab=96.23 E-value=0.015 Score=52.23 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=67.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe---------------cCccccccHHHHHhccCCcEEEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH---------------LGLPVFNSVAEAKAETKANASVI 122 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i---------------~GvPVy~Sv~ea~~~~~~DvaVd 122 (182)
..+|.|+|+ |++|+.+++.+..+|++|+ ++||....... .+. -+.+++|++. +.|++++
T Consensus 159 gktvGIiG~-G~IG~~vA~~l~afG~~V~--~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~--~aDiVvl 232 (347)
T PLN02928 159 GKTVFILGY-GAIGIELAKRLRPFGVKLL--ATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAG--EADIVVL 232 (347)
T ss_pred CCEEEEECC-CHHHHHHHHHHhhCCCEEE--EECCCCChhhhhhhccccccccccccccC-cccCHHHHHh--hCCEEEE
Confidence 467999999 9999999999999999999 78875311100 012 3668999998 7999999
Q ss_pred eeChHH-HHHHHHHHHHcCC---CEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 123 YVPPPF-AAAAIMEAMEAEL---DLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 123 fVpp~a-v~~a~~eAie~GI---k~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
.+|-.. ...++.+..=+.+ ..+|+++-| ..-|.+.|.++-+.--+
T Consensus 233 ~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG-~lVde~AL~~AL~~g~i 281 (347)
T PLN02928 233 CCTLTKETAGIVNDEFLSSMKKGALLVNIARG-GLLDYDAVLAALESGHL 281 (347)
T ss_pred CCCCChHhhcccCHHHHhcCCCCeEEEECCCc-cccCHHHHHHHHHcCCe
Confidence 999433 2333332222222 247775655 34455555555444333
No 165
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.19 E-value=0.0098 Score=51.82 Aligned_cols=90 Identities=20% Similarity=0.243 Sum_probs=60.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--ecCcc-----------------ccccHHHHHhccCCcE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--HLGLP-----------------VFNSVAEAKAETKANA 119 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i~GvP-----------------Vy~Sv~ea~~~~~~Dv 119 (182)
+||.|+|+ |.||..++..+.+.|.+|. .+++...-+. ..|+. +..+. +..+ ++|+
T Consensus 3 mkI~IiG~-G~mG~~~A~~L~~~G~~V~--~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~D~ 76 (341)
T PRK08229 3 ARICVLGA-GSIGCYLGGRLAAAGADVT--LIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA--TADL 76 (341)
T ss_pred ceEEEECC-CHHHHHHHHHHHhcCCcEE--EEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhcc--CCCE
Confidence 67999999 9999999999999898877 5554321000 01222 22334 3344 7999
Q ss_pred EEEeeChHHHHHHHHHHHHc-CC-CEEEEeCCCCCHH
Q 030169 120 SVIYVPPPFAAAAIMEAMEA-EL-DLVVCITEGIPQH 154 (182)
Q Consensus 120 aVdfVpp~av~~a~~eAie~-GI-k~VV~iTeG~~~e 154 (182)
+++.++.....+++++.... .- ..|+.++.|+...
T Consensus 77 vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 77 VLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred EEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 99999999988888766543 11 2355567888754
No 166
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=96.19 E-value=0.018 Score=51.64 Aligned_cols=75 Identities=15% Similarity=0.229 Sum_probs=57.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAi 137 (182)
.||.|+|++|-.|.++.+.+... .++++ . +..... +..+ +.+++.+ ++|+++...|...+.+.+.++.
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~-~-l~s~~~------~~~~-~~~~~~~--~~D~vFlalp~~~s~~~~~~~~ 70 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELL-S-IAPDRR------KDAA-ERAKLLN--AADVAILCLPDDAAREAVSLVD 70 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEE-E-Eecccc------cCcC-CHhHhhc--CCCEEEECCCHHHHHHHHHHHH
Confidence 47999999999999999999854 58888 3 333321 1011 3445555 7999999999999999999999
Q ss_pred HcCCCEE
Q 030169 138 EAELDLV 144 (182)
Q Consensus 138 e~GIk~V 144 (182)
++|+++|
T Consensus 71 ~~g~~VI 77 (310)
T TIGR01851 71 NPNTCII 77 (310)
T ss_pred hCCCEEE
Confidence 9999765
No 167
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=96.17 E-value=0.018 Score=52.77 Aligned_cols=87 Identities=14% Similarity=0.120 Sum_probs=61.4
Q ss_pred CceEEEEccCCCCchhhhHHHHH---hCCceEEeeccCCCCCeEecCccccccHHH---HHhccCCcEEEEeeChHHHH-
Q 030169 58 NTRVICQGITGKNGTFHTEQAIE---YGTKMVVGGVTPKKGGTEHLGLPVFNSVAE---AKAETKANASVIYVPPPFAA- 130 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~---~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~e---a~~~~~~DvaVdfVpp~av~- 130 (182)
..|++|+|+ |..|..+.+.+.+ .|.+++ |-++.......+.|+||+.++++ ..+++++|.+++..|...-.
T Consensus 124 ~rrvLIIGa-g~~~~~L~~l~~~~~~~g~~vV-Gfi~~dd~~~~i~gvpVlG~~~dl~~~v~~~~Id~ViIAlp~~~~~~ 201 (442)
T TIGR03013 124 KRRILVLGT-GPRAREIARLRRSSDRRGHEIV-GFVPLPDEPAYVPSEHVIENGDGLVEYVLRHRIDEIVIALDERRGSL 201 (442)
T ss_pred CCcEEEEEC-CHHHHHHHHHHHhCccCCeEEE-EEEcCCccccccCCCcccCCHHHHHHHHHhCCCCEEEEECchhhcch
Confidence 467999998 8899888444432 468899 77743222225789999987554 56678899999999865433
Q ss_pred --HHHHHHHHcCCCEEEE
Q 030169 131 --AAIMEAMEAELDLVVC 146 (182)
Q Consensus 131 --~a~~eAie~GIk~VV~ 146 (182)
+.+++|-+.|++..+.
T Consensus 202 ~~~~l~~~~~~gv~V~iv 219 (442)
T TIGR03013 202 PVDELLECKLSGIEVVDA 219 (442)
T ss_pred HHHHHHHHHhCCCEEEEc
Confidence 3467777788877654
No 168
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.17 E-value=0.0084 Score=53.68 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=68.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--EecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~e 135 (182)
..|-|+|+ |+.|+.+++.+..+|++|+ +.||....+ ...++--..+++++++ +.|++++.+|-.- ...++.+
T Consensus 143 kTvGIiG~-G~IG~~va~~l~afgm~v~--~~d~~~~~~~~~~~~~~~~~~Ld~lL~--~sDiv~lh~PlT~eT~g~i~~ 217 (324)
T COG0111 143 KTVGIIGL-GRIGRAVAKRLKAFGMKVI--GYDPYSPRERAGVDGVVGVDSLDELLA--EADILTLHLPLTPETRGLINA 217 (324)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEE--EECCCCchhhhccccceecccHHHHHh--hCCEEEEcCCCCcchhcccCH
Confidence 45999999 9999999999999999999 999944221 2345556688999999 8999999999643 2233322
Q ss_pred H----HHcCCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 136 A----MEAELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 136 A----ie~GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
. ++.|. .+|+.+=|- .-|.+.|.++-+.-
T Consensus 218 ~~~a~MK~ga-ilIN~aRG~-vVde~aL~~AL~~G 250 (324)
T COG0111 218 EELAKMKPGA-ILINAARGG-VVDEDALLAALDSG 250 (324)
T ss_pred HHHhhCCCCe-EEEECCCcc-eecHHHHHHHHHcC
Confidence 2 23344 677744443 44444444544443
No 169
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=96.14 E-value=0.023 Score=54.90 Aligned_cols=95 Identities=18% Similarity=0.271 Sum_probs=59.7
Q ss_pred eeeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeec-cCCCC---------------Ce------E--ecCcccccc
Q 030169 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGV-TPKKG---------------GT------E--HLGLPVFNS 107 (182)
Q Consensus 52 ~~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgV-dp~~~---------------G~------~--i~GvPVy~S 107 (182)
.........|+|.|++|..|+.+++.+++.|.+|+ +.+ ++.+. |. + ..++-=.++
T Consensus 74 ~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vv-al~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 74 ELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVR-AGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred ccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 34444566799999999999999999999999888 432 21110 00 0 012222223
Q ss_pred HHHHHhccCCcEEEEeeCh----------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 108 VAEAKAETKANASVIYVPP----------------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 108 v~ea~~~~~~DvaVdfVpp----------------~av~~a~~eAie~GIk~VV~iTe 149 (182)
+++++. ++|++|..... ..+..+++.|.++|++.+|.+++
T Consensus 153 I~~aLg--giDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSS 208 (576)
T PLN03209 153 IGPALG--NASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTS 208 (576)
T ss_pred HHHHhc--CCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 444444 68988876532 13456677777889988887664
No 170
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=96.09 E-value=0.041 Score=45.98 Aligned_cols=87 Identities=14% Similarity=0.145 Sum_probs=55.4
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC--e---Ee----------cCccccccHHHHHhccCCcEEEEee
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG--T---EH----------LGLPVFNSVAEAKAETKANASVIYV 124 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G--~---~i----------~GvPVy~Sv~ea~~~~~~DvaVdfV 124 (182)
||+|.|++|..|+.+++.+.+.|.+++ +++..... . .. .++.-..+++++.+..++|+++.+.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~a 78 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVV--VLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFA 78 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEE--EEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECc
Confidence 589999999999999999999898887 44321100 0 00 1222223355655545789988766
Q ss_pred Ch------------------HHHHHHHHHHHHcCCCEEEEeC
Q 030169 125 PP------------------PFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 125 pp------------------~av~~a~~eAie~GIk~VV~iT 148 (182)
.. ..+..+++.|.+.+++.+|.++
T Consensus 79 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~s 120 (328)
T TIGR01179 79 GLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSS 120 (328)
T ss_pred cccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEec
Confidence 32 1234556667778887777655
No 171
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.08 E-value=0.016 Score=48.94 Aligned_cols=87 Identities=15% Similarity=0.075 Sum_probs=56.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC----Ce----------EecCcccccc-----HHHHHhccCCc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG----GT----------EHLGLPVFNS-----VAEAKAETKAN 118 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~----G~----------~i~GvPVy~S-----v~ea~~~~~~D 118 (182)
..||+|||+ |+.|+.+++.+.+.|.++| +..|.... |- +..++..|+. -+++.. .++|
T Consensus 23 g~~vaIqGf-GnVG~~~a~~L~~~G~~vV-~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~D 99 (217)
T cd05211 23 GLTVAVQGL-GNVGWGLAKKLAEEGGKVL-AVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILG-LDVD 99 (217)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEE-EEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCccccee-cccc
Confidence 478999999 9999999999999999888 75554320 10 1123333331 233333 3788
Q ss_pred EEEEeeChHHHHHHHHHHHHcCCCEEEEeCCC
Q 030169 119 ASVIYVPPPFAAAAIMEAMEAELDLVVCITEG 150 (182)
Q Consensus 119 vaVdfVpp~av~~a~~eAie~GIk~VV~iTeG 150 (182)
+.+-..+.... ..+.+.+.+.+.|+. ...
T Consensus 100 VlipaA~~~~i--~~~~a~~l~a~~V~e-~AN 128 (217)
T cd05211 100 IFAPCALGNVI--DLENAKKLKAKVVAE-GAN 128 (217)
T ss_pred EEeeccccCcc--ChhhHhhcCccEEEe-CCC
Confidence 88877776633 334555668899987 444
No 172
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.07 E-value=0.018 Score=49.48 Aligned_cols=95 Identities=13% Similarity=0.089 Sum_probs=59.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe--------------cC-------------ccccccHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH--------------LG-------------LPVFNSVAE 110 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i--------------~G-------------vPVy~Sv~e 110 (182)
.+||.|+|+ |.||..++..+...|.+|+ .+|+....-+. .| +.+-+++++
T Consensus 4 ~~kI~vIGa-G~mG~~iA~~la~~G~~V~--l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 80 (292)
T PRK07530 4 IKKVGVIGA-GQMGNGIAHVCALAGYDVL--LNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED 80 (292)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCeEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH
Confidence 468999999 9999999999999898888 55543211000 01 334455644
Q ss_pred HHhccCCcEEEEeeChH-HHHHHHHHHHHcCCC---EEEEeCCCCCHHHHHH
Q 030169 111 AKAETKANASVIYVPPP-FAAAAIMEAMEAELD---LVVCITEGIPQHDMVI 158 (182)
Q Consensus 111 a~~~~~~DvaVdfVpp~-av~~a~~eAie~GIk---~VV~iTeG~~~eD~~~ 158 (182)
.+ ++|+++..+|.+ .++..+..-++..++ .++.-|.+++..++.+
T Consensus 81 -~~--~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~ 129 (292)
T PRK07530 81 -LA--DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS 129 (292)
T ss_pred -hc--CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 44 799999999875 333333333433332 3333588998765433
No 173
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=96.06 E-value=0.022 Score=52.41 Aligned_cols=93 Identities=13% Similarity=0.123 Sum_probs=57.3
Q ss_pred CCeeeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--e------cCcccc-cc-HHHHHhccCCcE
Q 030169 50 HPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--H------LGLPVF-NS-VAEAKAETKANA 119 (182)
Q Consensus 50 ~~~~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i------~GvPVy-~S-v~ea~~~~~~Dv 119 (182)
++-=+-.+.+||+|.|++|-.|+.+++.+++.|.+|+ +++....+.. . ..+..+ .+ +++.+. ++|+
T Consensus 112 ~~~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~--~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~--~~D~ 187 (436)
T PLN02166 112 VPVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVI--VIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILL--EVDQ 187 (436)
T ss_pred CCcccccCCCEEEEECCccHHHHHHHHHHHHCCCEEE--EEeCCCCccHhHhhhhccCCceEEEECcccccccc--CCCE
Confidence 3333345569999999999999999999999999998 4543221110 0 011111 12 222333 6888
Q ss_pred EEEeeCh----H--------------HHHHHHHHHHHcCCCEEEE
Q 030169 120 SVIYVPP----P--------------FAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 120 aVdfVpp----~--------------av~~a~~eAie~GIk~VV~ 146 (182)
++-+.-. . ....+++.|.++|++.|+.
T Consensus 188 ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~ 232 (436)
T PLN02166 188 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLT 232 (436)
T ss_pred EEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 7776521 1 1456777777889876655
No 174
>PRK06813 homoserine dehydrogenase; Validated
Probab=96.05 E-value=0.028 Score=50.89 Aligned_cols=107 Identities=19% Similarity=0.174 Sum_probs=65.8
Q ss_pred ceEEEEccCCCCchhhhHHHHH--------hC--CceEEeeccCCCCCeEecCcccc----------------c-cHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIE--------YG--TKMVVGGVTPKKGGTEHLGLPVF----------------N-SVAEA 111 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~--------~g--~~IV~AgVdp~~~G~~i~GvPVy----------------~-Sv~ea 111 (182)
.+|++.|+ |.-|+.+++.+.+ +| ++|+ +-.+....-....|++.- . ...+.
T Consensus 3 i~I~liG~-G~VG~~~~~~L~~~~~~l~~~~g~~l~v~-~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (346)
T PRK06813 3 IKVVLSGY-GTVGREFIKLLNEKYLYINETYGIDLVVS-GVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEER 80 (346)
T ss_pred eEEEEEec-ChhHHHHHHHHHHhHHHHHHhcCCcEEEE-EEEecchhhccccCCChhhhhhccccccchhhhhccChHHH
Confidence 68999998 9999999887652 24 4455 433432211011122211 1 12222
Q ss_pred H-hccCCcEEEEeeCh-----HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 112 K-AETKANASVIYVPP-----PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 112 ~-~~~~~DvaVdfVpp-----~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
. +..++|++|+.+|. +.+++.+.+|+++|+++|-+ --+.--.+..+|.++|++--+
T Consensus 81 ~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTA-NK~~la~~~~eL~~lA~~~g~ 142 (346)
T PRK06813 81 ATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAI-SKGALVTNWREINEAAKIANV 142 (346)
T ss_pred hcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcC-CcHHHhccHHHHHHHHHHcCC
Confidence 2 22258999999886 57889999999999999855 444444555777777765433
No 175
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.02 E-value=0.055 Score=44.92 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=56.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeecc-CCCCCe---EecCcccc-cc----HHHHHhc--cCCcEEEEeeCh
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVT-PKKGGT---EHLGLPVF-NS----VAEAKAE--TKANASVIYVPP 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVd-p~~~G~---~i~GvPVy-~S----v~ea~~~--~~~DvaVdfVpp 126 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ +.+. +..... +..++.++ -+ .+++.+. .++|+++...+.
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~-~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g~ 95 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVK-AGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATGF 95 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEE-EEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 46899999999999999999998898888 5432 211000 00112211 11 2223222 268999877553
Q ss_pred H--------------HHHHHHHHHHHcCCCEEEEeCC
Q 030169 127 P--------------FAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 127 ~--------------av~~a~~eAie~GIk~VV~iTe 149 (182)
. ....+++.+.+.|++.+|.+++
T Consensus 96 ~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS 132 (251)
T PLN00141 96 RRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSS 132 (251)
T ss_pred CcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2 2456677777788888777664
No 176
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.01 E-value=0.015 Score=52.74 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=67.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCC-----------------CCe--------Ee--cCccccccHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKK-----------------GGT--------EH--LGLPVFNSVA 109 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~-----------------~G~--------~i--~GvPVy~Sv~ 109 (182)
.||.|-|| |+.|+.+.+.+.+.+ +++| |-.+... .++ .+ .++||+.+.+
T Consensus 2 ikV~INGf-GrIGR~v~ra~~~~~~dieVV-aInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~ 79 (335)
T COG0057 2 IKVAINGF-GRIGRLVARAALERDGDIEVV-AINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERD 79 (335)
T ss_pred cEEEEecC-cHHHHHHHHHHHhCCCCeEEE-EEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCC
Confidence 58999999 999999999888764 9999 6433110 010 11 2799999866
Q ss_pred -HHHh--ccCCcEEEEeeChHHHHHHHHHHHHc-CCCEEEEeCCC
Q 030169 110 -EAKA--ETKANASVIYVPPPFAAAAIMEAMEA-ELDLVVCITEG 150 (182)
Q Consensus 110 -ea~~--~~~~DvaVdfVpp~av~~a~~eAie~-GIk~VV~iTeG 150 (182)
+.+. +..+|++++.+|--.-.+.++.-+++ |.|.|+.-.++
T Consensus 80 p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~ 124 (335)
T COG0057 80 PANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPG 124 (335)
T ss_pred hHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCC
Confidence 5543 34689999999999999999988888 59999884444
No 177
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.00 E-value=0.044 Score=45.42 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=27.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCc-eEEeeccCCCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTK-MVVGGVTPKKG 95 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~-IV~AgVdp~~~ 95 (182)
+.||+|+|+ |..|..+++.+...|.. |. -+|+...
T Consensus 21 ~s~VlIiG~-gglG~evak~La~~GVg~i~--lvD~d~v 56 (197)
T cd01492 21 SARILLIGL-KGLGAEIAKNLVLSGIGSLT--ILDDRTV 56 (197)
T ss_pred hCcEEEEcC-CHHHHHHHHHHHHcCCCEEE--EEECCcc
Confidence 467999999 66999999999999944 44 6666643
No 178
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=95.91 E-value=0.048 Score=46.50 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=66.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeec-cCCCCC----eEecCcccccc--HHHHHhccCCcEEEEeeChHH---
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGV-TPKKGG----TEHLGLPVFNS--VAEAKAETKANASVIYVPPPF--- 128 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgV-dp~~~G----~~i~GvPVy~S--v~ea~~~~~~DvaVdfVpp~a--- 128 (182)
|||+|+|++|+.|+.+.+.....|-+++ |-| ||.+.- ..+..--||+- +++.+. +.|++|....+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVT-AivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~--g~DaVIsA~~~~~~~~ 77 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVT-AIVRNASKLAARQGVTILQKDIFDLTSLASDLA--GHDAVISAFGAGASDN 77 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeE-EEEeChHhccccccceeecccccChhhhHhhhc--CCceEEEeccCCCCCh
Confidence 6899999999999999999999998888 653 333321 11222334443 446666 7899999876651
Q ss_pred ------HHHHHHHHHHc-CCCEEEEeC----------------CCCCHHHHHHHHHHhc
Q 030169 129 ------AAAAIMEAMEA-ELDLVVCIT----------------EGIPQHDMVINFTRVN 164 (182)
Q Consensus 129 ------v~~a~~eAie~-GIk~VV~iT----------------eG~~~eD~~~l~~~ak 164 (182)
..+.+.++++. |++..+++. ..||.+......+-++
T Consensus 78 ~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g~rLvD~p~fP~ey~~~A~~~ae 136 (211)
T COG2910 78 DELHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEGTRLVDTPDFPAEYKPEALAQAE 136 (211)
T ss_pred hHHHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCCceeecCCCCchhHHHHHHHHHH
Confidence 12335566666 777654332 5666666555554444
No 179
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=95.90 E-value=0.023 Score=43.69 Aligned_cols=86 Identities=23% Similarity=0.285 Sum_probs=52.6
Q ss_pred CceEEEEccCCCCchhhhHHHHH---hCCceEEeeccCCC--CCeEecCccccccHHHH---HhccCCcEEEEeeCh---
Q 030169 58 NTRVICQGITGKNGTFHTEQAIE---YGTKMVVGGVTPKK--GGTEHLGLPVFNSVAEA---KAETKANASVIYVPP--- 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~---~g~~IV~AgVdp~~--~G~~i~GvPVy~Sv~ea---~~~~~~DvaVdfVpp--- 126 (182)
..+..++|. |..|..+.+.+.+ .|.+++ |-+|+.. .+.+..++|++.+++++ .+++++|-+++..|.
T Consensus 77 ~~~~~~v~~-~~~~~~~~~~l~~~~~~g~~vv-g~~d~~~~~~~~~~~~~~~lg~~~~l~~~~~~~~id~v~ial~~~~~ 154 (175)
T PF13727_consen 77 GRNVLIVGA-GGAGRELAEALRSNPRLGYRVV-GFVDDDPSDRGPEIDGVPVLGDLDDLPELVREHDIDEVIIALPWSEE 154 (175)
T ss_dssp -EEEEEE---SHHHHHHHHHHHH--SSSEEEE-EEE-S-GGGTT-EETTEEEE--GGGHHHHHHHHT--EEEE--TTS-H
T ss_pred ccceEEEEE-echHHHHHHHHHhhhhcCceEE-EEEeCchhhccCcccCceeEcCHHHHHHHHHhCCCCEEEEEcCccCH
Confidence 344566674 6678888887774 568888 7666655 35567899999875554 556799999999765
Q ss_pred HHHHHHHHHHHHcCCCEEE
Q 030169 127 PFAAAAIMEAMEAELDLVV 145 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV 145 (182)
+...+++++|-+.|++.-+
T Consensus 155 ~~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 155 EQIKRIIEELENHGVRVRV 173 (175)
T ss_dssp HHHHHHHHHHHTTT-EEEE
T ss_pred HHHHHHHHHHHhCCCEEEE
Confidence 4556778888888887644
No 180
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=95.90 E-value=0.055 Score=46.30 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=55.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-----------------ecCccccccHHHHHhccCCcEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-----------------HLGLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-----------------i~GvPVy~Sv~ea~~~~~~DvaV 121 (182)
|||+|.|++|-.|+.+++.+.+.|.+|+ + ++....... ..++--..++.++.+..++|+++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv 78 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVV-I-LDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVI 78 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEE-E-EecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence 5799999999999999999999898888 4 432110000 01111112345555544689998
Q ss_pred EeeCh------------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 122 IYVPP------------------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 122 dfVpp------------------~av~~a~~eAie~GIk~VV~iTe 149 (182)
.+... .....+++.|.++|++.+|.+++
T Consensus 79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 124 (338)
T PRK10675 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSS 124 (338)
T ss_pred ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 87421 02345666677789887775453
No 181
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=95.85 E-value=0.064 Score=45.15 Aligned_cols=87 Identities=18% Similarity=0.143 Sum_probs=55.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC-eEec--Cc-------cccccHHHHHhccCCcEEEEeeCh--
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG-TEHL--GL-------PVFNSVAEAKAETKANASVIYVPP-- 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G-~~i~--Gv-------PVy~Sv~ea~~~~~~DvaVdfVpp-- 126 (182)
++|+|.|++|-.|+.+++.+.+.|.+|+ +++..... .... ++ --.++++++.+ ++|+++.....
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~--~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~--~~d~vi~~a~~~~ 76 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVR--VLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVA--GCRALFHVAADYR 76 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEE--EEEecCccccccccCCceEEEeeCCCHHHHHHHHh--CCCEEEEeceecc
Confidence 3699999999999999999999998888 43332211 0111 22 12233555555 68888876532
Q ss_pred --------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 127 --------------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 127 --------------~av~~a~~eAie~GIk~VV~iTe 149 (182)
..+..+++.+.+.+++.+|.+++
T Consensus 77 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 113 (328)
T TIGR03466 77 LWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSS 113 (328)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 12345567777888887776553
No 182
>PLN02858 fructose-bisphosphate aldolase
Probab=95.82 E-value=0.027 Score=59.10 Aligned_cols=102 Identities=19% Similarity=0.114 Sum_probs=72.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeC-hHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVP-PPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVp-p~av~~a~ 133 (182)
.++|.++|. |.||..+++.+...|.++. +.|+...-.+ -.|....++.+++.+ ++|++++.+| +..+.+++
T Consensus 324 ~~~IGfIGl-G~MG~~mA~~L~~~G~~V~--v~dr~~~~~~~l~~~Ga~~~~s~~e~~~--~aDvVi~~V~~~~~v~~Vl 398 (1378)
T PLN02858 324 VKRIGFIGL-GAMGFGMASHLLKSNFSVC--GYDVYKPTLVRFENAGGLAGNSPAEVAK--DVDVLVIMVANEVQAENVL 398 (1378)
T ss_pred CCeEEEECc-hHHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEecCChHHHHHHH
Confidence 478999998 9999999999999998888 5555431110 125566789999988 7999999999 77777776
Q ss_pred H---HHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 134 M---EAMEA-EL-DLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 134 ~---eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
. .++.. .- +.+|. .+-+++....++.+..++
T Consensus 399 ~g~~g~~~~l~~g~ivVd-~STvsP~~~~~la~~l~~ 434 (1378)
T PLN02858 399 FGDLGAVSALPAGASIVL-SSTVSPGFVIQLERRLEN 434 (1378)
T ss_pred hchhhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHh
Confidence 2 23332 11 24444 666777788888776654
No 183
>PRK06487 glycerate dehydrogenase; Provisional
Probab=95.81 E-value=0.035 Score=49.17 Aligned_cols=100 Identities=13% Similarity=-0.026 Sum_probs=64.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~eA 136 (182)
..+|.|+|+ |+.|+.+++.+..+|++|+ ++++.... ... -+.+++|+++ +.|++++..|-.. ....+.+.
T Consensus 148 gktvgIiG~-G~IG~~vA~~l~~fgm~V~--~~~~~~~~---~~~-~~~~l~ell~--~sDiv~l~lPlt~~T~~li~~~ 218 (317)
T PRK06487 148 GKTLGLLGH-GELGGAVARLAEAFGMRVL--IGQLPGRP---ARP-DRLPLDELLP--QVDALTLHCPLTEHTRHLIGAR 218 (317)
T ss_pred CCEEEEECC-CHHHHHHHHHHhhCCCEEE--EECCCCCc---ccc-cccCHHHHHH--hCCEEEECCCCChHHhcCcCHH
Confidence 356999999 9999999999999999999 77875322 112 2458999998 7999999999543 33333222
Q ss_pred HHcCC---CEEEEeCCCCCHHHHHHHHHHhcccc
Q 030169 137 MEAEL---DLVVCITEGIPQHDMVINFTRVNILL 167 (182)
Q Consensus 137 ie~GI---k~VV~iTeG~~~eD~~~l~~~ak~ip 167 (182)
.=+.+ ..+|+++-|=-+ |...|.++-+.-.
T Consensus 219 ~~~~mk~ga~lIN~aRG~vV-de~AL~~AL~~g~ 251 (317)
T PRK06487 219 ELALMKPGALLINTARGGLV-DEQALADALRSGH 251 (317)
T ss_pred HHhcCCCCeEEEECCCcccc-CHHHHHHHHHcCC
Confidence 22222 246664444444 4444444443333
No 184
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=95.77 E-value=0.042 Score=48.99 Aligned_cols=105 Identities=10% Similarity=0.121 Sum_probs=67.8
Q ss_pred CceEEEEccCCCCchhhhHHHH-HhCCceEEeeccCCCCCe--EecCccccccHHHHHhccCCcEEEEeeChHHHH-HHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAI-EYGTKMVVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAA-AAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~-~~g~~IV~AgVdp~~~G~--~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~-~a~ 133 (182)
..++.|+|+ |+.|+.+++.+. .+|++|+ +.+|..... ...++ .|.+++|+++ .+|++++-+|-...- ..+
T Consensus 145 gktvGIiG~-G~IG~~va~~l~~~fgm~V~--~~~~~~~~~~~~~~~~-~~~~l~ell~--~sDvv~lh~plt~~T~~li 218 (323)
T PRK15409 145 HKTLGIVGM-GRIGMALAQRAHFGFNMPIL--YNARRHHKEAEERFNA-RYCDLDTLLQ--ESDFVCIILPLTDETHHLF 218 (323)
T ss_pred CCEEEEEcc-cHHHHHHHHHHHhcCCCEEE--EECCCCchhhHHhcCc-EecCHHHHHH--hCCEEEEeCCCChHHhhcc
Confidence 456999999 999999999998 8999988 677653221 11244 3669999999 899999999954432 222
Q ss_pred H-HHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhcccchh
Q 030169 134 M-EAMEA-EL-DLVVCITEGIPQHDMVINFTRVNILLVA 169 (182)
Q Consensus 134 ~-eAie~-GI-k~VV~iTeG~~~eD~~~l~~~ak~ipv~ 169 (182)
. +.+++ +- ..+|+++=| +.-|...|.++-++-.++
T Consensus 219 ~~~~l~~mk~ga~lIN~aRG-~vVde~AL~~AL~~g~i~ 256 (323)
T PRK15409 219 GAEQFAKMKSSAIFINAGRG-PVVDENALIAALQKGEIH 256 (323)
T ss_pred CHHHHhcCCCCeEEEECCCc-cccCHHHHHHHHHcCCee
Confidence 2 22222 22 236664444 444666666665554443
No 185
>PLN02858 fructose-bisphosphate aldolase
Probab=95.75 E-value=0.032 Score=58.49 Aligned_cols=103 Identities=19% Similarity=0.114 Sum_probs=72.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
.+||.++|. |.||..+++.+.+.|.++. +.|....-.+ ..|..+.+|++|+.+ .+|+++..+|...+.+.+.
T Consensus 4 ~~~IGfIGL-G~MG~~mA~~L~~~G~~v~--v~dr~~~~~~~l~~~Ga~~~~s~~e~a~--~advVi~~l~~~~~v~~V~ 78 (1378)
T PLN02858 4 AGVVGFVGL-DSLSFELASSLLRSGFKVQ--AFEISTPLMEKFCELGGHRCDSPAEAAK--DAAALVVVLSHPDQVDDVF 78 (1378)
T ss_pred CCeEEEEch-hHHHHHHHHHHHHCCCeEE--EEcCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEEcCChHHHHHHH
Confidence 467999998 9999999999999998887 5555432111 137888999999998 7999999999876655442
Q ss_pred ---HHHHcCCC--EEEEeCCCCCHHHHHHHHHHhcc
Q 030169 135 ---EAMEAELD--LVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 135 ---eAie~GIk--~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
+.+-.+.+ .+|+-.+=++.+...++.+..++
T Consensus 79 ~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~ 114 (1378)
T PLN02858 79 FGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTE 114 (1378)
T ss_pred hchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHh
Confidence 22333332 24443555777777777766654
No 186
>PLN02240 UDP-glucose 4-epimerase
Probab=95.72 E-value=0.089 Score=45.27 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=56.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC----------------CeE----ecCccccccHHHHHhccCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG----------------GTE----HLGLPVFNSVAEAKAETKA 117 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~----------------G~~----i~GvPVy~Sv~ea~~~~~~ 117 (182)
.++|+|.|++|-.|+.+++.+.+.|.+|+ + ++.... +.. ..++-=..+++++.++.++
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~ 82 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAGYKVV-V-IDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRF 82 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE-E-EeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCC
Confidence 36799999999999999999999998888 4 431110 000 1122222335555554478
Q ss_pred cEEEEeeCh------------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 118 NASVIYVPP------------------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 118 DvaVdfVpp------------------~av~~a~~eAie~GIk~VV~iTe 149 (182)
|.++.+... .....+++.|.+.|++.+|.+++
T Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 132 (352)
T PLN02240 83 DAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSS 132 (352)
T ss_pred CEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 998887632 12335666677788887766443
No 187
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=95.71 E-value=0.066 Score=46.87 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=33.0
Q ss_pred eeeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccC
Q 030169 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTP 92 (182)
Q Consensus 52 ~~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp 92 (182)
..+..+.+||+|.|++|-.|+.+++.+++.|.+|+ +++.
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~--~~d~ 47 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFLNQTVI--GLDN 47 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHCCCEEE--EEeC
Confidence 34666778999999999999999999999998888 5543
No 188
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.66 E-value=0.036 Score=51.34 Aligned_cols=102 Identities=17% Similarity=0.121 Sum_probs=65.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-EecCccccccHHHHHhccCCcEEEEeeChHHHHHH-HH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA-IM 134 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a-~~ 134 (182)
...+|+|+|+ |+.|+.+++.+..+|.++++..+||.+.-. ...|+.+. +++|+.+ +.|++|..+....+.+. ..
T Consensus 194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~--~aDVVItaTG~~~vI~~~~~ 269 (406)
T TIGR00936 194 AGKTVVVAGY-GWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAK--IGDIFITATGNKDVIRGEHF 269 (406)
T ss_pred CcCEEEEECC-CHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHh--cCCEEEECCCCHHHHHHHHH
Confidence 4568999999 999999999999999998844567754211 11255444 4677776 78999998876554432 22
Q ss_pred HHHHcCCCEEEEeCCCCCH-HHHHHHHHHhc
Q 030169 135 EAMEAELDLVVCITEGIPQ-HDMVINFTRVN 164 (182)
Q Consensus 135 eAie~GIk~VV~iTeG~~~-eD~~~l~~~ak 164 (182)
.+++.|- +++.+.++.. =|...|.+++.
T Consensus 270 ~~mK~Ga--iliN~G~~~~eId~~aL~~~~~ 298 (406)
T TIGR00936 270 ENMKDGA--IVANIGHFDVEIDVKALEELAV 298 (406)
T ss_pred hcCCCCc--EEEEECCCCceeCHHHHHHHHh
Confidence 3333333 3333555554 56666666553
No 189
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.66 E-value=0.035 Score=51.69 Aligned_cols=101 Identities=18% Similarity=0.156 Sum_probs=65.4
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-EecCccccccHHHHHhccCCcEEEEeeChHHHHH-HHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA-AIM 134 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~-a~~ 134 (182)
...+|+|+|+ |.+|+.+++.+...|.+|++..++|.+.-. ...|+.+. +++++.+ .+|+++..+....+.+ -..
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~-~l~eal~--~aDVVI~aTG~~~vI~~~~~ 286 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVM-TMEEAAE--LGDIFVTATGNKDVITAEHM 286 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEec-CHHHHHh--CCCEEEECCCCHHHHHHHHH
Confidence 4567999998 999999999999999998855677765321 11255543 5788877 7999999986544333 233
Q ss_pred HHHHcCCCEEEEeCCCCC-HHHHHHHHHHh
Q 030169 135 EAMEAELDLVVCITEGIP-QHDMVINFTRV 163 (182)
Q Consensus 135 eAie~GIk~VV~iTeG~~-~eD~~~l~~~a 163 (182)
+.++.|. .+++ ..++. +-|+..|.+.+
T Consensus 287 ~~mK~Ga-iliN-vG~~d~Eid~~~L~~~~ 314 (425)
T PRK05476 287 EAMKDGA-ILAN-IGHFDNEIDVAALEELA 314 (425)
T ss_pred hcCCCCC-EEEE-cCCCCCccChHHHhhcC
Confidence 3334442 3333 33333 34566666654
No 190
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.66 E-value=0.062 Score=44.49 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=55.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCCCeE--------------e----------------cCcc--c
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKGGTE--------------H----------------LGLP--V 104 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~G~~--------------i----------------~GvP--V 104 (182)
++||+|+|+ |..|..+++.+...|. +|. -+|....... + .++. +
T Consensus 19 ~s~VlviG~-gglGsevak~L~~~GVg~i~--lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~ 95 (198)
T cd01485 19 SAKVLIIGA-GALGAEIAKNLVLAGIDSIT--IVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSI 95 (198)
T ss_pred hCcEEEECC-CHHHHHHHHHHHHcCCCEEE--EEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEE
Confidence 478999999 6699999999999993 344 4444322110 0 0111 1
Q ss_pred c--------ccHHHHHhccCCcEEEEeeCh-HHHHHHHHHHHHcCCCEEEEeCCCC
Q 030169 105 F--------NSVAEAKAETKANASVIYVPP-PFAAAAIMEAMEAELDLVVCITEGI 151 (182)
Q Consensus 105 y--------~Sv~ea~~~~~~DvaVdfVpp-~av~~a~~eAie~GIk~VV~iTeG~ 151 (182)
+ ++.++..+ ++|++++...+ .....+-+.|.++++|.|.+-+.|+
T Consensus 96 ~~~~~~~~~~~~~~~~~--~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~ 149 (198)
T cd01485 96 VEEDSLSNDSNIEEYLQ--KFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGL 149 (198)
T ss_pred EecccccchhhHHHHHh--CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 1 12233344 67888877644 3445666777788888887766665
No 191
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=95.61 E-value=0.071 Score=48.04 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=55.8
Q ss_pred chhhhHHHHHhCCceEEeeccCCCCC--------eEecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHHHHHHcC-
Q 030169 71 GTFHTEQAIEYGTKMVVGGVTPKKGG--------TEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIMEAMEAE- 140 (182)
Q Consensus 71 G~~v~k~~~~~g~~IV~AgVdp~~~G--------~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~eAie~G- 140 (182)
|..++..+.+.|.+|+ ++|+.... -...|+.+..+..++.+ ++|++++++|+.. +.++++...++-
T Consensus 32 G~~MA~~La~aG~~V~--v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~--~ADvVIlaVP~~~~v~~Vl~~L~~~L~ 107 (342)
T PRK12557 32 GSRMAIEFAEAGHDVV--LAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK--HGEIHILFTPFGKKTVEIAKNILPHLP 107 (342)
T ss_pred HHHHHHHHHhCCCeEE--EEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh--CCCEEEEECCCcHHHHHHHHHHHhhCC
Confidence 4455667777787777 66765421 01247778888888887 8999999999998 677776555431
Q ss_pred C-CEEEEeCCCCCHHHH-HHHHHH
Q 030169 141 L-DLVVCITEGIPQHDM-VINFTR 162 (182)
Q Consensus 141 I-k~VV~iTeG~~~eD~-~~l~~~ 162 (182)
- ..|+. +..++.... ..+.+.
T Consensus 108 ~g~IVId-~ST~~~~~~s~~l~~~ 130 (342)
T PRK12557 108 ENAVICN-TCTVSPVVLYYSLEGE 130 (342)
T ss_pred CCCEEEE-ecCCCHHHHHHHHHHH
Confidence 1 23444 445555555 455444
No 192
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.57 E-value=0.074 Score=46.35 Aligned_cols=96 Identities=11% Similarity=0.078 Sum_probs=59.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCC----CCCeEe---------cCccccccHHHHHhccCCcEEEEee
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK----KGGTEH---------LGLPVFNSVAEAKAETKANASVIYV 124 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~----~~G~~i---------~GvPVy~Sv~ea~~~~~~DvaVdfV 124 (182)
.+||+|+|+ |.+|..+...+.+.|.++...+-++. ..|..+ ..++++.+.++ .. .+|+++++|
T Consensus 5 ~m~I~IiG~-GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~--~~D~vilav 80 (313)
T PRK06249 5 TPRIGIIGT-GAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAED-MP--PCDWVLVGL 80 (313)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhh-cC--CCCEEEEEe
Confidence 478999999 99999999999888866551122220 011111 11334445443 23 689999999
Q ss_pred ChHHHHHHHHHHHHcC--CCEEEEeCCCCCHHHHH
Q 030169 125 PPPFAAAAIMEAMEAE--LDLVVCITEGIPQHDMV 157 (182)
Q Consensus 125 pp~av~~a~~eAie~G--Ik~VV~iTeG~~~eD~~ 157 (182)
+.....+++......- -..|+.+.-|+..++..
T Consensus 81 K~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l 115 (313)
T PRK06249 81 KTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQL 115 (313)
T ss_pred cCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHH
Confidence 9988887666554331 12455667898755433
No 193
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.56 E-value=0.015 Score=51.07 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=65.6
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCe-Ee---cCcc--ccccHHHHHhccCCcEEEEeeChHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGT-EH---LGLP--VFNSVAEAKAETKANASVIYVPPPFA 129 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~-~i---~GvP--Vy~Sv~ea~~~~~~DvaVdfVpp~av 129 (182)
+..+|+|+|+ |.||+.+++.+...| .+|+ .+++..... +. .|.. .++++.+++. ++|+++..++....
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~--v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~--~aDvVi~at~~~~~ 251 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGVAEIT--IANRTYERAEELAKELGGNAVPLDELLELLN--EADVVISATGAPHY 251 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCCCEEE--EEeCCHHHHHHHHHHcCCeEEeHHHHHHHHh--cCCEEEECCCCCch
Confidence 4678999999 999999999998877 4454 445442110 11 1222 2344666666 78999999998777
Q ss_pred HHHHHHHHHcC---CCEEEEeC------------CCCCHHHHHHHHHHhc
Q 030169 130 AAAIMEAMEAE---LDLVVCIT------------EGIPQHDMVINFTRVN 164 (182)
Q Consensus 130 ~~a~~eAie~G---Ik~VV~iT------------eG~~~eD~~~l~~~ak 164 (182)
.+....+++.. -..++-++ +|+..-|++.|.++++
T Consensus 252 ~~~~~~~~~~~~~~~~~viDlavPrdi~~~v~~l~~v~l~~vDdl~~~~~ 301 (311)
T cd05213 252 AKIVERAMKKRSGKPRLIVDLAVPRDIEPEVGELEGVRLYTIDDLEEVVE 301 (311)
T ss_pred HHHHHHHHhhCCCCCeEEEEeCCCCCCchhhccCCCcEEEEHHHhHHHHH
Confidence 66666665442 23444434 3566666777776664
No 194
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.52 E-value=0.051 Score=48.66 Aligned_cols=96 Identities=18% Similarity=0.205 Sum_probs=64.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-----------------------EecCccccccHHHHHhc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-----------------------EHLGLPVFNSVAEAKAE 114 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-----------------------~i~GvPVy~Sv~ea~~~ 114 (182)
-.+|.|+|+ |-||..++..+...|.+++ .+|+..... ....+-..++++++.+
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~~V~--l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~- 82 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGLDVV--AWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVA- 82 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhc-
Confidence 467999999 9999999999999999888 555542100 0112345667888887
Q ss_pred cCCcEEEEeeChHHH-HHHHHHHHHcCCC---EEEEeCCCCCHHHHHH
Q 030169 115 TKANASVIYVPPPFA-AAAIMEAMEAELD---LVVCITEGIPQHDMVI 158 (182)
Q Consensus 115 ~~~DvaVdfVpp~av-~~a~~eAie~GIk---~VV~iTeG~~~eD~~~ 158 (182)
++|.++-.+|.+.. +..+-.-++...+ .+..-|.+++..++..
T Consensus 83 -~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~ 129 (321)
T PRK07066 83 -DADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYA 129 (321)
T ss_pred -CCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHH
Confidence 89999999997764 4444444444333 2333357887766654
No 195
>PRK08223 hypothetical protein; Validated
Probab=95.51 E-value=0.08 Score=47.04 Aligned_cols=84 Identities=13% Similarity=0.068 Sum_probs=55.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeEe---------------------------c---Cccccc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTEH---------------------------L---GLPVFN 106 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~i---------------------------~---GvPVy~ 106 (182)
+.||+|+|+ |-.|..+++.+...| .+|. -+|........ + .+-+|+
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~aGVG~i~--lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~ 103 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLARLGIGKFT--IADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFP 103 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHhCCCeEE--EEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 578999999 999999999999989 4444 55554332210 0 222232
Q ss_pred ------cHHHHHhccCCcEEEEeeCh---HHHHHHHHHHHHcCCCEEEE
Q 030169 107 ------SVAEAKAETKANASVIYVPP---PFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 107 ------Sv~ea~~~~~~DvaVdfVpp---~av~~a~~eAie~GIk~VV~ 146 (182)
+.+++++ ++|++||.+.. +.-+.+-+.|.++|+|.|.+
T Consensus 104 ~~l~~~n~~~ll~--~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~ 150 (287)
T PRK08223 104 EGIGKENADAFLD--GVDVYVDGLDFFEFDARRLVFAACQQRGIPALTA 150 (287)
T ss_pred cccCccCHHHHHh--CCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 2445555 67888887764 45566677788888888765
No 196
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=95.50 E-value=0.018 Score=43.20 Aligned_cols=84 Identities=18% Similarity=0.146 Sum_probs=52.5
Q ss_pred eEEEEccCCCCchhhhHHHHH-hCCceEEeecc-CCCCCeEec----Ccc--ccccHH-HHHhccCCcEEEEeeChHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIE-YGTKMVVGGVT-PKKGGTEHL----GLP--VFNSVA-EAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVd-p~~~G~~i~----GvP--Vy~Sv~-ea~~~~~~DvaVdfVpp~av~ 130 (182)
|+.|+|++|.+|+.+.+.+.+ .+++++ +-+. +...|+... .+. ++..++ +-.+..++|++++.+|+....
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~-av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVV-ALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEE-EEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHH
Confidence 589999999999999998887 478888 5433 322232221 121 122221 111123789999999999999
Q ss_pred HHHHHH---HHcCCCEE
Q 030169 131 AAIMEA---MEAELDLV 144 (182)
Q Consensus 131 ~a~~eA---ie~GIk~V 144 (182)
+.+... ++.|...|
T Consensus 80 ~~~~~~~~~~~~g~~vi 96 (122)
T smart00859 80 EIAPLLPKAAEAGVKVI 96 (122)
T ss_pred HHHHHHHhhhcCCCEEE
Confidence 975533 35565444
No 197
>PRK06182 short chain dehydrogenase; Validated
Probab=95.49 E-value=0.16 Score=42.32 Aligned_cols=79 Identities=13% Similarity=0.172 Sum_probs=55.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
..+++|.|++|..|+.+++.+.+.|.+|+ +++..... ++++.+. +++ +..|...++.+.+++++.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~--~~~r~~~~-----------l~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~ 68 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVY--GAARRVDK-----------MEDLASL-GVHPLSLDVTDEASIKAAVDTI 68 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE--EEeCCHHH-----------HHHHHhC-CCeEEEeeCCCHHHHHHHHHHH
Confidence 35799999999999999999999998888 44443211 1121111 222 346788888888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|+ ..|+
T Consensus 69 ~~~~~~id~li~-~ag~ 84 (273)
T PRK06182 69 IAEEGRIDVLVN-NAGY 84 (273)
T ss_pred HHhcCCCCEEEE-CCCc
Confidence 765 6888887 6565
No 198
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=95.47 E-value=0.047 Score=45.18 Aligned_cols=84 Identities=20% Similarity=0.163 Sum_probs=52.1
Q ss_pred EEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe---cCcccc--ccHHHHHhccCCcEEEEeeChH--------
Q 030169 61 VICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH---LGLPVF--NSVAEAKAETKANASVIYVPPP-------- 127 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i---~GvPVy--~Sv~ea~~~~~~DvaVdfVpp~-------- 127 (182)
|+|.|++|-.|+.+++.+.+.|.+|+ + ++........ .++-.+ ....+.+. ++|+++.+....
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~-~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~Vvh~a~~~~~~~~~~~ 76 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVT-I-LTRSPPAGANTKWEGYKPWAPLAESEALE--GADAVINLAGEPIADKRWTE 76 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEE-E-EeCCCCCCCcccceeeecccccchhhhcC--CCCEEEECCCCCcccccCCH
Confidence 57999999999999999999999998 4 4433221111 111111 22333344 789998777421
Q ss_pred ------------HHHHHHHHHHHcCCC-EEEEeC
Q 030169 128 ------------FAAAAIMEAMEAELD-LVVCIT 148 (182)
Q Consensus 128 ------------av~~a~~eAie~GIk-~VV~iT 148 (182)
.++.+++.|.++|++ .+++.+
T Consensus 77 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~ 110 (292)
T TIGR01777 77 ERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISA 110 (292)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEe
Confidence 156677778888884 444433
No 199
>PRK12829 short chain dehydrogenase; Provisional
Probab=95.42 E-value=0.12 Score=42.13 Aligned_cols=86 Identities=21% Similarity=0.208 Sum_probs=56.0
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHH
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~ 134 (182)
-++.+++|.|++|..|+.+++.+.+.|.+|+ .++..... .+ .+.+...+.++ -+..|+..++...++++
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~--~~~r~~~~-----~~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVH--VCDVSEAA-----LA---ATAARLPGAKVTATVADVADPAQVERVFD 78 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEE--EEeCCHHH-----HH---HHHHHHhcCceEEEEccCCCHHHHHHHHH
Confidence 3568899999999999999999999998877 55543211 10 11111111111 24567788888888877
Q ss_pred HHHHc--CCCEEEEeCCCCC
Q 030169 135 EAMEA--ELDLVVCITEGIP 152 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~~ 152 (182)
+..+. ++..|+. ..|..
T Consensus 79 ~~~~~~~~~d~vi~-~ag~~ 97 (264)
T PRK12829 79 TAVERFGGLDVLVN-NAGIA 97 (264)
T ss_pred HHHHHhCCCCEEEE-CCCCC
Confidence 77654 7888887 54443
No 200
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.41 E-value=0.035 Score=42.52 Aligned_cols=89 Identities=20% Similarity=0.278 Sum_probs=49.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCCCeEecC-ccccc----------cHHHHHhccCCcEEEEeeC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKGGTEHLG-LPVFN----------SVAEAKAETKANASVIYVP 125 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~G~~i~G-vPVy~----------Sv~ea~~~~~~DvaVdfVp 125 (182)
+.||+|+|+ |..|..+++.+...|. ++. -+|+.....+..+ -+.|. .+++.+.+..|++-+...+
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~--lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~ 78 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVGKIT--LVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIP 78 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTSEEE--EEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEE
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCcee--ecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeee
Confidence 578999999 9999999999999893 455 5555543321111 11111 1333344445555565555
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCC
Q 030169 126 PPFAAAAIMEAMEAELDLVVCITEG 150 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~VV~iTeG 150 (182)
.....+..++.+ .+...||+.+..
T Consensus 79 ~~~~~~~~~~~~-~~~d~vi~~~d~ 102 (135)
T PF00899_consen 79 EKIDEENIEELL-KDYDIVIDCVDS 102 (135)
T ss_dssp SHCSHHHHHHHH-HTSSEEEEESSS
T ss_pred cccccccccccc-cCCCEEEEecCC
Confidence 555444445544 355566553333
No 201
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.41 E-value=0.088 Score=43.25 Aligned_cols=94 Identities=21% Similarity=0.259 Sum_probs=54.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-e----------------------cCccccccHHHHHhcc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-H----------------------LGLPVFNSVAEAKAET 115 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-i----------------------~GvPVy~Sv~ea~~~~ 115 (182)
|||.|+|. |..|-..+-.+.+.|.+++ |+|.+..--+ + ..+-...+.+++++
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA~~G~~V~--g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~-- 75 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALAEKGHQVI--GVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK-- 75 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEE--EE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH--
T ss_pred CEEEEECC-CcchHHHHHHHHhCCCEEE--EEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh--
Confidence 68999998 9999999999999999999 6665541100 0 13345556777666
Q ss_pred CCcEEEEeeCh----------HHHHHHHHHHHHcCC-CEEEEeCCCCCHHHHH
Q 030169 116 KANASVIYVPP----------PFAAAAIMEAMEAEL-DLVVCITEGIPQHDMV 157 (182)
Q Consensus 116 ~~DvaVdfVpp----------~av~~a~~eAie~GI-k~VV~iTeG~~~eD~~ 157 (182)
++|+.++.||- +.+..+++...++-- ..+|++-+=+|+.-.+
T Consensus 76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~ 128 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTE 128 (185)
T ss_dssp H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHH
T ss_pred ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeeh
Confidence 68999999983 345666666655422 3444445445544444
No 202
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=95.40 E-value=0.032 Score=50.44 Aligned_cols=86 Identities=13% Similarity=0.046 Sum_probs=62.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHh----CCceEEeecc--------------CC---------CCCeE--ec--Cccccc-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY----GTKMVVGGVT--------------PK---------KGGTE--HL--GLPVFN- 106 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~----g~~IV~AgVd--------------p~---------~~G~~--i~--GvPVy~- 106 (182)
.||.|.|| |+.|+.+.+.+.+. +++++ |--| .. ..|+. ++ .+.|+.
T Consensus 2 ~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vv-aind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~ 79 (336)
T PRK13535 2 IRVAINGF-GRIGRNVLRALYESGRRAEITVV-AINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHE 79 (336)
T ss_pred eEEEEECc-CHHHHHHHHHHHhcCCCCceEEE-EecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEc
Confidence 58999999 99999999988874 37777 4322 11 11111 12 366663
Q ss_pred -cHHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 107 -SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 107 -Sv~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
++++.+ .+.++|+++..+......+.+..++++|.+.|++
T Consensus 80 ~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~i 121 (336)
T PRK13535 80 RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLF 121 (336)
T ss_pred CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEe
Confidence 456554 3358999999999999999999999999999887
No 203
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=95.39 E-value=0.084 Score=44.20 Aligned_cols=82 Identities=16% Similarity=0.111 Sum_probs=57.7
Q ss_pred EEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeC-----------hH---
Q 030169 62 ICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVP-----------PP--- 127 (182)
Q Consensus 62 iVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVp-----------p~--- 127 (182)
+|.|++|-.|+.+++.+.+.|.+++ ....... + ++--..+++++++..++|++|-+.. +.
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~-~~~~~~~-~----Dl~~~~~l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~ 74 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNL-VLRTHKE-L----DLTRQADVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFI 74 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEE-Eeecccc-C----CCCCHHHHHHHHhccCCCEEEEeeeeecccchhhhCcHHHH
Confidence 4789999999999999999887777 4443322 2 3444566778777777899988751 11
Q ss_pred -----HHHHHHHHHHHcCCCEEEEeCC
Q 030169 128 -----FAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 128 -----av~~a~~eAie~GIk~VV~iTe 149 (182)
....+++.|.+++++.+|.+++
T Consensus 75 ~~n~~~~~~ll~~~~~~~~~~~i~~SS 101 (306)
T PLN02725 75 RENLQIQTNVIDAAYRHGVKKLLFLGS 101 (306)
T ss_pred HHHhHHHHHHHHHHHHcCCCeEEEeCc
Confidence 2455788888889876555443
No 204
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=95.37 E-value=0.12 Score=45.56 Aligned_cols=103 Identities=17% Similarity=0.120 Sum_probs=69.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEec-Ccccccc----H-HHHHhccCCcEEEEeeChHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHL-GLPVFNS----V-AEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~-GvPVy~S----v-~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
.++|+|+|. |.||+-+++.+.+.|..+.+-|.|......+.. .+=+-++ . .+... ++|++|+.||..+..+
T Consensus 3 ~~~v~IvG~-GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~--~aD~VivavPi~~~~~ 79 (279)
T COG0287 3 SMKVGIVGL-GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAA--EADLVIVAVPIEATEE 79 (279)
T ss_pred CcEEEEECC-chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcc--cCCEEEEeccHHHHHH
Confidence 467999996 999999999999999555214888876321111 1112222 2 33333 6899999999999999
Q ss_pred HHHHHHH-cCCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 132 AIMEAME-AELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 132 a~~eAie-~GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
++++... .....+|.=++.+...-++.+.+..
T Consensus 80 ~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~ 112 (279)
T COG0287 80 VLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYL 112 (279)
T ss_pred HHHHhcccCCCCCEEEecccccHHHHHHHHHhc
Confidence 9999885 3444455545666666666666655
No 205
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=95.34 E-value=0.15 Score=44.42 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=56.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-e--------------cCccccccHHHHHhccCCcEEEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-H--------------LGLPVFNSVAEAKAETKANASVI 122 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-i--------------~GvPVy~Sv~ea~~~~~~DvaVd 122 (182)
.++|+|.|++|-.|+.+++.+.+.|.+|+ +++....... . .++-=..++.++.++.++|+++.
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~~V~--~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih 81 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGAEVY--GYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFH 81 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCCEEE--EEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEE
Confidence 47899999999999999999999998988 4443221110 0 01111123455566556898887
Q ss_pred eeCh------------------HHHHHHHHHHHHcC-CCEEEEeCC
Q 030169 123 YVPP------------------PFAAAAIMEAMEAE-LDLVVCITE 149 (182)
Q Consensus 123 fVpp------------------~av~~a~~eAie~G-Ik~VV~iTe 149 (182)
+... .....+++.|.+.+ ++.+|.+++
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 82 LAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred CCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 6631 12345556666666 666666564
No 206
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=95.33 E-value=0.0062 Score=49.10 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=64.2
Q ss_pred ceEEEEccCCCCchhhhHHHH-HhCCceEEeeccCCCCCeE--------------------------ecC--cccccc--
Q 030169 59 TRVICQGITGKNGTFHTEQAI-EYGTKMVVGGVTPKKGGTE--------------------------HLG--LPVFNS-- 107 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~-~~g~~IV~AgVdp~~~G~~--------------------------i~G--vPVy~S-- 107 (182)
.||.|-|+ |+.|+.+.+.+. ..+++|+ |--|+...-+. ++| ++++..
T Consensus 1 ikVgINGf-GRIGR~v~r~~~~~~~~evv-aInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~d 78 (151)
T PF00044_consen 1 IKVGINGF-GRIGRLVLRAALDQPDIEVV-AINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERD 78 (151)
T ss_dssp EEEEEEST-SHHHHHHHHHHHTSTTEEEE-EEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSS
T ss_pred CEEEEECC-CcccHHHHHhhcccceEEEE-EEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhhh
Confidence 48999999 999999999888 4569999 76666522111 123 333332
Q ss_pred HHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 108 VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 108 v~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
+++++ .+.++|++++.++.....+.++.-+++|.|.|+.
T Consensus 79 p~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkVii 118 (151)
T PF00044_consen 79 PEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVII 118 (151)
T ss_dssp GGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEE
T ss_pred hcccccccccccEEEeccccceecccccccccccccceee
Confidence 44443 3458999999999999999999999999999998
No 207
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.32 E-value=0.018 Score=51.94 Aligned_cols=100 Identities=13% Similarity=0.191 Sum_probs=75.2
Q ss_pred ceEEEEccCCCCchhhhHHHHH--hCCceEEeeccCCCCCe----EecCccccccHHHHHhccCCcEEEEeeChHHH---
Q 030169 59 TRVICQGITGKNGTFHTEQAIE--YGTKMVVGGVTPKKGGT----EHLGLPVFNSVAEAKAETKANASVIYVPPPFA--- 129 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~--~g~~IV~AgVdp~~~G~----~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av--- 129 (182)
.+|+|+| -+.|+.....++. .+++++ |-..-+-.-+ .-.|+|.|..++|+++ ++|++.+.|-...+
T Consensus 5 ksVvV~G--trFGq~Ylaaf~~~~~~~eLa-GiLaqGSeRSRaLAh~~GVply~~~eelpd--~idiACVvVrsai~Gg~ 79 (361)
T COG4693 5 KSVVVCG--TRFGQFYLAAFAAAPPRFELA-GILAQGSERSRALAHRLGVPLYCEVEELPD--DIDIACVVVRSAIVGGQ 79 (361)
T ss_pred ceEEEec--chHHHHHHHHhccCCCCceee-hhhhcccHHHHHHHHHhCCccccCHhhCCC--CCCeEEEEEeeeeecCC
Confidence 3899999 6899999887774 468888 4333322111 0249999999999999 89999998876654
Q ss_pred -HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 130 -AAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 130 -~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
.++++..++.||+++.= -=+-.+|+.++.++|++
T Consensus 80 Gs~larall~RGi~VlqE--HPl~p~di~~l~rlA~r 114 (361)
T COG4693 80 GSALARALLARGIHVLQE--HPLHPRDIQDLLRLAER 114 (361)
T ss_pred cHHHHHHHHHcccHHHHh--CCCCHHHHHHHHHHHHH
Confidence 57888889999997642 33557899999999865
No 208
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.23 E-value=0.064 Score=48.71 Aligned_cols=86 Identities=16% Similarity=0.072 Sum_probs=63.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCCCCeE-e--c--CccccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKGGTE-H--L--GLPVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~G~~-i--~--GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
.||.|+|+||--|+...+.|.+.+ ++.+.-.-.+...|++ . . .+++-+++.+..+-.++|+++-.-+.+...+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s~~ 81 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVSKE 81 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHHHH
Confidence 589999999999999999999855 4433133444444544 1 1 3566666555444337999999999999999
Q ss_pred HHHHHHHcCCCEE
Q 030169 132 AIMEAMEAELDLV 144 (182)
Q Consensus 132 a~~eAie~GIk~V 144 (182)
...++.++|.-+|
T Consensus 82 ~~p~~~~~G~~VI 94 (334)
T COG0136 82 VEPKAAEAGCVVI 94 (334)
T ss_pred HHHHHHHcCCEEE
Confidence 9999999996655
No 209
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=95.23 E-value=0.11 Score=43.20 Aligned_cols=64 Identities=14% Similarity=0.155 Sum_probs=41.9
Q ss_pred eEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCC--CCe-E---e----------cCccccccHHHHHhccCCcEEE
Q 030169 60 RVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKK--GGT-E---H----------LGLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~--~G~-~---i----------~GvPVy~Sv~ea~~~~~~DvaV 121 (182)
+|+|.|++|..|+.+++.+++.| .+|+ +++... ... . . .++--.+++.++++...+|+++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi 78 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVI--VLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVV 78 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEE--EecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEE
Confidence 58999999999999999998776 6777 444210 000 0 0 1222223466677755699999
Q ss_pred EeeC
Q 030169 122 IYVP 125 (182)
Q Consensus 122 dfVp 125 (182)
.+..
T Consensus 79 ~~a~ 82 (317)
T TIGR01181 79 HFAA 82 (317)
T ss_pred Eccc
Confidence 8874
No 210
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.21 E-value=0.12 Score=41.40 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=52.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~ 134 (182)
.++|+|.|++|..|+.+++.+.+.|.+++ ..+...... ...+.+..+.. ++ -+..|+..++.+.++++
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~~v~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 76 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGADVV-VHYRSDEEA--------AEELVEAVEALGRRAQAVQADVTDKAALEAAVA 76 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEE-EEeCCCHHH--------HHHHHHHHHhcCCceEEEECCcCCHHHHHHHHH
Confidence 45899999999999999999999998877 433332211 11111111111 12 13456677787777776
Q ss_pred HHHHc--CCCEEEEeCCC
Q 030169 135 EAMEA--ELDLVVCITEG 150 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG 150 (182)
+..+. ++..|+. ..|
T Consensus 77 ~~~~~~~~id~vi~-~ag 93 (249)
T PRK12825 77 AAVERFGRIDILVN-NAG 93 (249)
T ss_pred HHHHHcCCCCEEEE-CCc
Confidence 66554 6777776 555
No 211
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=95.21 E-value=0.08 Score=49.89 Aligned_cols=107 Identities=20% Similarity=0.130 Sum_probs=66.6
Q ss_pred ecCCceEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCCCeE--------------ec-----------------C
Q 030169 55 VDKNTRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKGGTE--------------HL-----------------G 101 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G~~--------------i~-----------------G 101 (182)
.+...||+|.|+||.-|+...+.+.++ .++++ |- .-+..-+. +. +
T Consensus 54 ~~~~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vv-aL-aag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~ 131 (454)
T PLN02696 54 WDGPKPISLLGSTGSIGTQTLDIVAENPDKFKVV-AL-AAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDK 131 (454)
T ss_pred cCCccEEEEecCCcHhhHHHHHHHHhCccccEEE-EE-ECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCC
Confidence 344468999999999999999988864 38888 42 22211100 00 1
Q ss_pred ccccc---cHHHHHhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccchhcchhhhhhh
Q 030169 102 LPVFN---SVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAFLNFIMKLT 178 (182)
Q Consensus 102 vPVy~---Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~~~~~~~~~~ 178 (182)
..|+. .+.++.+..++|++|..+.-.+...-..+|+++|.++..+ =|+..|..|.+||++.
T Consensus 132 ~~vl~G~egl~~la~~~evDiVV~AIvG~aGL~pTl~AIkaGK~VALA----------------NKESLV~aG~lI~~~a 195 (454)
T PLN02696 132 PEIIPGEEGIVEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALA----------------NKETLIAGGPFVLPLA 195 (454)
T ss_pred cEEEECHHHHHHHHcCCCCCEEEEeCccccchHHHHHHHHCCCcEEEe----------------cHHHHHhhHHHHHHHH
Confidence 22443 2445444446777777777777777777778888665543 2555666666776654
Q ss_pred c
Q 030169 179 R 179 (182)
Q Consensus 179 ~ 179 (182)
+
T Consensus 196 k 196 (454)
T PLN02696 196 K 196 (454)
T ss_pred H
Confidence 3
No 212
>PLN02214 cinnamoyl-CoA reductase
Probab=95.20 E-value=0.14 Score=44.80 Aligned_cols=90 Identities=20% Similarity=0.214 Sum_probs=58.2
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeecc-CCCC-----------CeEe----cCccccccHHHHHhccCCcEE
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVT-PKKG-----------GTEH----LGLPVFNSVAEAKAETKANAS 120 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVd-p~~~-----------G~~i----~GvPVy~Sv~ea~~~~~~Dva 120 (182)
+.++|+|.|++|-.|+.+++.+.+.|.+|+ +-+. +... +..+ .++--..+++++++ ++|++
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~V 85 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVK-GTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAID--GCDGV 85 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEE-EEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHh--cCCEE
Confidence 456799999999999999999999998888 4321 1110 0000 12222233556666 68988
Q ss_pred EEeeCh-------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030169 121 VIYVPP-------------PFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 121 VdfVpp-------------~av~~a~~eAie~GIk~VV~iTe 149 (182)
+-+..+ ..+..+++.|.++|++.+|.+++
T Consensus 86 ih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS 127 (342)
T PLN02214 86 FHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSS 127 (342)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 877643 12455677788889987766453
No 213
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.19 E-value=0.032 Score=48.59 Aligned_cols=74 Identities=18% Similarity=0.150 Sum_probs=52.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--------------ecC-------------ccccccHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--------------HLG-------------LPVFNSVAEA 111 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--------------i~G-------------vPVy~Sv~ea 111 (182)
++|.|+|+ |.||..++..+.+.|.+|+ .+|+...--+ ..| +-+..+++++
T Consensus 3 ~~V~VIG~-G~mG~~iA~~la~~G~~V~--v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a 79 (308)
T PRK06129 3 GSVAIIGA-GLIGRAWAIVFARAGHEVR--LWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADA 79 (308)
T ss_pred cEEEEECc-cHHHHHHHHHHHHCCCeeE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHh
Confidence 57999996 9999999999999998888 6666531000 011 3466778888
Q ss_pred HhccCCcEEEEeeChHH-HHHHHHHHH
Q 030169 112 KAETKANASVIYVPPPF-AAAAIMEAM 137 (182)
Q Consensus 112 ~~~~~~DvaVdfVpp~a-v~~a~~eAi 137 (182)
.+ ++|+++..+|... +...+...+
T Consensus 80 ~~--~ad~Vi~avpe~~~~k~~~~~~l 104 (308)
T PRK06129 80 VA--DADYVQESAPENLELKRALFAEL 104 (308)
T ss_pred hC--CCCEEEECCcCCHHHHHHHHHHH
Confidence 77 7999999999763 344333333
No 214
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.17 E-value=0.11 Score=46.64 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=28.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKK 94 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~ 94 (182)
..+|+|+|+ |..|..+++.+...|. +|. -||+..
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aGvg~i~--lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAGIGKLT--IADRDY 58 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEE--EEcCCc
Confidence 467999999 9999999999999994 455 677754
No 215
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=95.14 E-value=0.039 Score=50.91 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=58.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHh--CCceEEeec-cCCC--CCeE----------ec---------------Ccccccc-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVVGGV-TPKK--GGTE----------HL---------------GLPVFNS- 107 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgV-dp~~--~G~~----------i~---------------GvPVy~S- 107 (182)
.||+|.|.||.-|+.+.+.+.++ .++|+ |.. +.+. .-+. +. ++.|+.-
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~Vv-aLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~ 80 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVV-ALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE 80 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEE-EEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence 57999999999999999887754 48888 543 1111 0000 00 1224333
Q ss_pred --HHHHHhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 108 --VAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 108 --v~ea~~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
+.++.+..++|+++..++-.+....+.+|+++|.+++.+
T Consensus 81 ~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLA 121 (385)
T PRK05447 81 EGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALA 121 (385)
T ss_pred hHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEe
Confidence 444444446899999999888888899999999887663
No 216
>PRK12320 hypothetical protein; Provisional
Probab=95.12 E-value=0.058 Score=53.17 Aligned_cols=87 Identities=18% Similarity=0.199 Sum_probs=56.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCcccc-c-----cHHHHHhccCCcEEEEeeChH-----
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVF-N-----SVAEAKAETKANASVIYVPPP----- 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy-~-----Sv~ea~~~~~~DvaVdfVpp~----- 127 (182)
|||+|.|++|..|+.+++.+.+.|.+|+ + ++.........++.++ . .+.+++. ++|+++-+.+..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi-~-ldr~~~~~~~~~ve~v~~Dl~d~~l~~al~--~~D~VIHLAa~~~~~~~ 76 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVS-G-IAQHPHDALDPRVDYVCASLRNPVLQELAG--EADAVIHLAPVDTSAPG 76 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEE-E-EeCChhhcccCCceEEEccCCCHHHHHHhc--CCCEEEEcCccCccchh
Confidence 4799999999999999999999998888 4 4332111001112111 1 2444444 789999988632
Q ss_pred -----HHHHHHHHHHHcCCCEEEEeCCC
Q 030169 128 -----FAAAAIMEAMEAELDLVVCITEG 150 (182)
Q Consensus 128 -----av~~a~~eAie~GIk~VV~iTeG 150 (182)
.+..+++.|.++|++.|+. ++.
T Consensus 77 ~vNv~Gt~nLleAA~~~GvRiV~~-SS~ 103 (699)
T PRK12320 77 GVGITGLAHVANAAARAGARLLFV-SQA 103 (699)
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEE-ECC
Confidence 2456677788889975554 543
No 217
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.12 E-value=0.16 Score=41.66 Aligned_cols=81 Identities=16% Similarity=0.218 Sum_probs=54.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eAi 137 (182)
++|+|.|++|..|..+++.+.+.|.+++ +++..... + +.+.+... .+++ +..|...++.+.+++++..
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~--~~~r~~~~-----~---~~~~~~~~-~~~~~~~~Dl~~~~~i~~~~~~~~ 69 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVI--ATGRRQER-----L---QELKDELG-DNLYIAQLDVRNRAAIEEMLASLP 69 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEE--EEECCHHH-----H---HHHHHHhc-cceEEEEecCCCHHHHHHHHHHHH
Confidence 4799999999999999999999998888 55543211 0 11111111 1222 3457788888888887776
Q ss_pred Hc--CCCEEEEeCCCC
Q 030169 138 EA--ELDLVVCITEGI 151 (182)
Q Consensus 138 e~--GIk~VV~iTeG~ 151 (182)
+. ++..+|. ..|+
T Consensus 70 ~~~~~id~vi~-~ag~ 84 (248)
T PRK10538 70 AEWRNIDVLVN-NAGL 84 (248)
T ss_pred HHcCCCCEEEE-CCCc
Confidence 64 6888887 5554
No 218
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.10 E-value=0.079 Score=49.68 Aligned_cols=100 Identities=14% Similarity=0.147 Sum_probs=59.2
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe--cCcccc----------ccHHHHH------------
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH--LGLPVF----------NSVAEAK------------ 112 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i--~GvPVy----------~Sv~ea~------------ 112 (182)
+..||+|||+ |+-|+.+++.+.+.|.+|| |-.|.. |.-. .|+.+- .++.+..
T Consensus 231 ~g~rVaIqGf-GnVG~~~A~~L~~~GakVV-avsDs~--G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 231 EGKRVVVSGS-GNVAIYAIEKAQQLGAKVV-TCSDSS--GYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEEcCC--ceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 3578999999 9999999999999999999 543421 1111 122222 1222221
Q ss_pred -hccCCcEEEEeeChHHHH-HHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Q 030169 113 -AETKANASVIYVPPPFAA-AAIMEAMEAELDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 113 -~~~~~DvaVdfVpp~av~-~a~~eAie~GIk~VV~iTeG~~~eD~~~l~ 160 (182)
-..++|+.+-........ +.+...++.+.+.|+.-+-|-...+..++.
T Consensus 307 i~~~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L 356 (445)
T PRK09414 307 PWSVPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVF 356 (445)
T ss_pred ccccCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHH
Confidence 123678877666554443 444444556899999844333333344433
No 219
>PRK12828 short chain dehydrogenase; Provisional
Probab=94.99 E-value=0.29 Score=39.05 Aligned_cols=83 Identities=18% Similarity=0.144 Sum_probs=53.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eA 136 (182)
..+++|.|++|..|+.+++.+.+.|.+++ .++.+.... . +...+... ... -+..|....+...++++++
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~--~~~r~~~~~-~------~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~ 76 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVA--LIGRGAAPL-S------QTLPGVPA-DALRIGGIDLVDPQAARRAVDEV 76 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEE--EEeCChHhH-H------HHHHHHhh-cCceEEEeecCCHHHHHHHHHHH
Confidence 45699999999999999999998898877 665543110 0 01111111 111 1336777788888888777
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..|+. ..|.
T Consensus 77 ~~~~~~~d~vi~-~ag~ 92 (239)
T PRK12828 77 NRQFGRLDALVN-IAGA 92 (239)
T ss_pred HHHhCCcCEEEE-CCcc
Confidence 665 6777777 5443
No 220
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=94.96 E-value=0.073 Score=48.78 Aligned_cols=82 Identities=12% Similarity=-0.033 Sum_probs=55.7
Q ss_pred ceEEEEccCCCCchhhhHHHH-HhCCc---eEEeeccCCCCCeEe--c--CccccccHHH-HHhccCCcEEEEeeChHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAI-EYGTK---MVVGGVTPKKGGTEH--L--GLPVFNSVAE-AKAETKANASVIYVPPPFA 129 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~-~~g~~---IV~AgVdp~~~G~~i--~--GvPVy~Sv~e-a~~~~~~DvaVdfVpp~av 129 (182)
++|+|+|+||--|+.+.+.+. +.++. ++ ..-+...+|+.. . .+.|.+.-.+ ..+ ++|+++-..+.+.+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~-~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~--~vDivffa~g~~~s 77 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPV-FFSTSQLGQAAPSFGGTTGTLQDAFDIDALK--ALDIIITCQGGDYT 77 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEE-EEEchhhCCCcCCCCCCcceEEcCccccccc--CCCEEEEcCCHHHH
Confidence 379999999999999999888 66644 44 222323333221 1 1233322121 233 78999999999999
Q ss_pred HHHHHHHHHcCCCE
Q 030169 130 AAAIMEAMEAELDL 143 (182)
Q Consensus 130 ~~a~~eAie~GIk~ 143 (182)
.+....+.++|.+.
T Consensus 78 ~~~~p~~~~aG~~~ 91 (366)
T TIGR01745 78 NEIYPKLRESGWQG 91 (366)
T ss_pred HHHHHHHHhCCCCe
Confidence 99999999999763
No 221
>PRK07577 short chain dehydrogenase; Provisional
Probab=94.95 E-value=0.32 Score=39.03 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=53.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAi 137 (182)
.++++|.|++|..|+.+++.+.+.|.+++ .++..... ..| . + =+..|...++.+.+++++..
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~~v~--~~~r~~~~----~~~---------~--~-~~~~D~~~~~~~~~~~~~~~ 64 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGHQVI--GIARSAID----DFP---------G--E-LFACDLADIEQTAATLAQIN 64 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEE--EEeCCccc----ccC---------c--e-EEEeeCCCHHHHHHHHHHHH
Confidence 35799999999999999999999998888 55544321 111 0 1 13467788888888888877
Q ss_pred Hc-CCCEEEEeCCCC
Q 030169 138 EA-ELDLVVCITEGI 151 (182)
Q Consensus 138 e~-GIk~VV~iTeG~ 151 (182)
+. ++..++. ..|.
T Consensus 65 ~~~~~d~vi~-~ag~ 78 (234)
T PRK07577 65 EIHPVDAIVN-NVGI 78 (234)
T ss_pred HhCCCcEEEE-CCCC
Confidence 65 5766776 5554
No 222
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=94.95 E-value=0.083 Score=47.70 Aligned_cols=106 Identities=19% Similarity=0.134 Sum_probs=74.7
Q ss_pred ceEEEEccCCCCchhhhHHHH-HhCCceEEeecc--CCCCCeEec--------CccccccHHHHHhccCCc-EEEEeeCh
Q 030169 59 TRVICQGITGKNGTFHTEQAI-EYGTKMVVGGVT--PKKGGTEHL--------GLPVFNSVAEAKAETKAN-ASVIYVPP 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~-~~g~~IV~AgVd--p~~~G~~i~--------GvPVy~Sv~ea~~~~~~D-vaVdfVpp 126 (182)
++|++.|. |..|....+.+. +.++++| |.++ +.+.|++.. |+-+-++++.... +.+| ++.+-.-|
T Consensus 3 ~~vvqyGt-G~vGv~air~l~akpe~elv-gawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlA-tl~~~~~y~~~~~ 79 (350)
T COG3804 3 LRVVQYGT-GSVGVAAIRGLLAKPELELV-GAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLA-TLADAVIYAPLLP 79 (350)
T ss_pred ceeEEecc-chHHHHHHHHHHcCCCCceE-EEEecCcccccccHHHhcCCCCceeEeeccccccee-ccccceeeecccc
Confidence 57888897 999998888777 5589999 7644 446676542 5555555555444 3343 33333334
Q ss_pred HHHHHHHHHHHHcCCCEEEE-----eCCCCCHHHHHHHHHHhcccchh
Q 030169 127 PFAAAAIMEAMEAELDLVVC-----ITEGIPQHDMVINFTRVNILLVA 169 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~-----iTeG~~~eD~~~l~~~ak~ipv~ 169 (182)
+ .+..++++.+||.+|-- +--+.+.+.++++.++|++.-.+
T Consensus 80 ~--~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn~ 125 (350)
T COG3804 80 S--VDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGNA 125 (350)
T ss_pred h--HHHHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCCc
Confidence 3 67778999999987643 44678999999999999887764
No 223
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.95 E-value=0.049 Score=49.36 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=54.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccc-----cccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPV-----FNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPV-----y~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
.+|.|+|+ |.+|..+++.+.+.|.+|+ |.|..... ....+. ..+.+...+ ++|+.|...+.....+.+
T Consensus 4 ~~i~iiGl-G~~G~slA~~l~~~G~~V~--g~D~~~~~--~~~~~~~~~~~~~~~~~~~~--~~dlvV~s~gi~~~~~~l 76 (418)
T PRK00683 4 QRVVVLGL-GVTGKSIARFLAQKGVYVI--GVDKSLEA--LQSCPYIHERYLENAEEFPE--QVDLVVRSPGIKKEHPWV 76 (418)
T ss_pred CeEEEEEE-CHHHHHHHHHHHHCCCEEE--EEeCCccc--cchhHHHhhhhcCCcHHHhc--CCCEEEECCCCCCCcHHH
Confidence 57999999 9999999999999998877 78876532 111111 122333333 678888877666667888
Q ss_pred HHHHHcCCC
Q 030169 134 MEAMEAELD 142 (182)
Q Consensus 134 ~eAie~GIk 142 (182)
.+|+++|++
T Consensus 77 ~~A~~~g~~ 85 (418)
T PRK00683 77 QAAIASHIP 85 (418)
T ss_pred HHHHHCCCc
Confidence 999999987
No 224
>PRK06139 short chain dehydrogenase; Provisional
Probab=94.93 E-value=0.077 Score=46.80 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=56.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE---EEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv---aVdfVpp~av~~a~~ 134 (182)
...|+|.|++|..|+.+++.+.+.|.+|+ .++.+... . ..+.+-+++...++ ..|...++.+.++++
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~~Vv--l~~R~~~~--l------~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~ 76 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGARLV--LAARDEEA--L------QAVAEECRALGAEVLVVPTDVTDADQVKALAT 76 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCCEEE--EEECCHHH--H------HHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHH
Confidence 35699999999999999999999999988 44443211 1 11111122222333 468888999999998
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 77 ~~~~~~g~iD~lVn-nAG~ 94 (330)
T PRK06139 77 QAASFGGRIDVWVN-NVGV 94 (330)
T ss_pred HHHHhcCCCCEEEE-CCCc
Confidence 88775 5788887 6664
No 225
>PRK06953 short chain dehydrogenase; Provisional
Probab=94.92 E-value=0.14 Score=41.25 Aligned_cols=79 Identities=18% Similarity=0.163 Sum_probs=51.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eAi 137 (182)
.+++|.|++|..|+.+++.+.+.|.+++ .++..... .+++.. .+++ ...|+..++.+..++++..
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~--~~~r~~~~-----------~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~ 67 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVI--ATARDAAA-----------LAALQA-LGAEALALDVADPASVAGLAWKLD 67 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEE--EEECCHHH-----------HHHHHh-ccceEEEecCCCHHHHHHHHHHhc
Confidence 3689999999999999999999998888 45443211 122111 1121 4566777777776655543
Q ss_pred HcCCCEEEEeCCCCC
Q 030169 138 EAELDLVVCITEGIP 152 (182)
Q Consensus 138 e~GIk~VV~iTeG~~ 152 (182)
..++..++. +.|..
T Consensus 68 ~~~~d~vi~-~ag~~ 81 (222)
T PRK06953 68 GEALDAAVY-VAGVY 81 (222)
T ss_pred CCCCCEEEE-CCCcc
Confidence 335788877 66653
No 226
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=94.89 E-value=0.17 Score=42.94 Aligned_cols=90 Identities=12% Similarity=0.126 Sum_probs=55.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeec-cCCCCCe------------Ee----cCccccccHHHHHhccCCcE
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGV-TPKKGGT------------EH----LGLPVFNSVAEAKAETKANA 119 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgV-dp~~~G~------------~i----~GvPVy~Sv~ea~~~~~~Dv 119 (182)
+.++|+|.|++|-.|+.+++.+.+.|.+|+ +-+ ++..... .+ .++--...++++++ ++|+
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~ 79 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVK-ATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD--GCEG 79 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEE-EEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc--CCCE
Confidence 457899999999999999999999998887 432 3221100 00 12222233556666 6898
Q ss_pred EEEeeCh--------H-H--------HHHHHHHHHHc-CCCEEEEeCC
Q 030169 120 SVIYVPP--------P-F--------AAAAIMEAMEA-ELDLVVCITE 149 (182)
Q Consensus 120 aVdfVpp--------~-a--------v~~a~~eAie~-GIk~VV~iTe 149 (182)
++-+..+ . . ...+++.|.+. +++.+|.+++
T Consensus 80 Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS 127 (322)
T PLN02662 80 VFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSS 127 (322)
T ss_pred EEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccC
Confidence 8776532 1 1 12345556666 8877765453
No 227
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=94.89 E-value=0.2 Score=40.64 Aligned_cols=84 Identities=19% Similarity=0.138 Sum_probs=55.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE---EEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv---aVdfVpp~av~~a~~e 135 (182)
+.++|.|++|..|+.+++.+.+.|.+++ ...+..... ... .++++ ++...++ ..|....+.+.+++++
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv-~~~~~~~~~----~~~---~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~ 74 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVV-AGCGPNSPR----RVK---WLEDQ-KALGFDFIASEGNVGDWDSTKAAFDK 74 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEE-EEcCCChHH----HHH---HHHHH-HhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 4589999999999999999999998888 544332211 000 12222 1112333 3677888888888888
Q ss_pred HHHc--CCCEEEEeCCCCC
Q 030169 136 AMEA--ELDLVVCITEGIP 152 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~~ 152 (182)
+.+. ++..+|. ..|+.
T Consensus 75 ~~~~~~~id~li~-~ag~~ 92 (246)
T PRK12938 75 VKAEVGEIDVLVN-NAGIT 92 (246)
T ss_pred HHHHhCCCCEEEE-CCCCC
Confidence 7765 6888887 66763
No 228
>PRK06179 short chain dehydrogenase; Provisional
Probab=94.87 E-value=0.27 Score=40.64 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=52.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eA 136 (182)
..+|+|.|++|..|+.+++.+.+.|.+|+ .++..... ... .. ++ -+-.|...++...++++.+
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~--~~~r~~~~--~~~----------~~--~~~~~~~D~~d~~~~~~~~~~~ 67 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYRVF--GTSRNPAR--AAP----------IP--GVELLELDVTDDASVQAAVDEV 67 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEE--EEeCChhh--ccc----------cC--CCeeEEeecCCHHHHHHHHHHH
Confidence 45699999999999999999999999888 33433211 110 01 11 2345777888888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|+ ..|+
T Consensus 68 ~~~~g~~d~li~-~ag~ 83 (270)
T PRK06179 68 IARAGRIDVLVN-NAGV 83 (270)
T ss_pred HHhCCCCCEEEE-CCCC
Confidence 664 4677776 7775
No 229
>PRK05865 hypothetical protein; Provisional
Probab=94.84 E-value=0.11 Score=52.30 Aligned_cols=89 Identities=17% Similarity=0.158 Sum_probs=59.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEec-------CccccccHHHHHhccCCcEEEEeeCh-----
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHL-------GLPVFNSVAEAKAETKANASVIYVPP----- 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~-------GvPVy~Sv~ea~~~~~~DvaVdfVpp----- 126 (182)
|||+|.|++|..|+.+++.+.+.|.+|+ + ++......... ++-=..+++++++ ++|+++.+...
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv-~-l~R~~~~~~~~~v~~v~gDL~D~~~l~~al~--~vD~VVHlAa~~~~~~ 76 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVV-G-IARHRPDSWPSSADFIAADIRDATAVESAMT--GADVVAHCAWVRGRND 76 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEE-E-EECCchhhcccCceEEEeeCCCHHHHHHHHh--CCCEEEECCCcccchH
Confidence 4799999999999999999999998888 4 44321110001 2222234555565 78999988643
Q ss_pred ----HHHHHHHHHHHHcCCCEEEEeCCCC
Q 030169 127 ----PFAAAAIMEAMEAELDLVVCITEGI 151 (182)
Q Consensus 127 ----~av~~a~~eAie~GIk~VV~iTeG~ 151 (182)
.....+++.|.++|++.+|.+++.-
T Consensus 77 ~vNv~GT~nLLeAa~~~gvkr~V~iSS~~ 105 (854)
T PRK05865 77 HINIDGTANVLKAMAETGTGRIVFTSSGH 105 (854)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEECCcH
Confidence 2345667777788998877766653
No 230
>PRK08278 short chain dehydrogenase; Provisional
Probab=94.79 E-value=0.15 Score=42.84 Aligned_cols=88 Identities=18% Similarity=0.168 Sum_probs=56.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCcc--ccccHHHHHhccCCc---EEEEeeChHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLP--VFNSVAEAKAETKAN---ASVIYVPPPFAAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvP--Vy~Sv~ea~~~~~~D---vaVdfVpp~av~~a 132 (182)
+++++|.|++|-.|+.+++.+.+.|.+++ .++..... ...++ +.+..++ .++...+ ...|...++.+.++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~--~~~~~~~l~~~~~~-~~~~~~~~~~~~~D~~~~~~i~~~ 80 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGANIV--IAAKTAEP--HPKLPGTIHTAAEE-IEAAGGQALPLVGDVRDEDQVAAA 80 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEeccccc--ccchhhHHHHHHHH-HHhcCCceEEEEecCCCHHHHHHH
Confidence 35799999999999999999999999888 44443321 11111 1111122 2211122 34678888888888
Q ss_pred HHHHHHc--CCCEEEEeCCCC
Q 030169 133 IMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 133 ~~eAie~--GIk~VV~iTeG~ 151 (182)
+++..+. ++..+|+ ..|+
T Consensus 81 ~~~~~~~~g~id~li~-~ag~ 100 (273)
T PRK08278 81 VAKAVERFGGIDICVN-NASA 100 (273)
T ss_pred HHHHHHHhCCCCEEEE-CCCC
Confidence 8887765 6788887 6665
No 231
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.78 E-value=0.06 Score=45.47 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=58.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC--e---EecCcccc---ccHHHHHhc---cCCcEEEEeeChH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG--T---EHLGLPVF---NSVAEAKAE---TKANASVIYVPPP 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G--~---~i~GvPVy---~Sv~ea~~~---~~~DvaVdfVpp~ 127 (182)
++++|+|+ |+.|..+++.+.+.|.+++ .++....- + +..+.-++ .+-.+++++ .++|+.+..+..+
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv--~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGHNVV--LIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCCceE--EEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 57999999 9999999999999998888 54443311 1 01223333 233333332 2789999999995
Q ss_pred HHH-HHHHHHHH-cCCCEEEEeC
Q 030169 128 FAA-AAIMEAME-AELDLVVCIT 148 (182)
Q Consensus 128 av~-~a~~eAie-~GIk~VV~iT 148 (182)
.+. -++..|.+ .|+|.+|+-+
T Consensus 78 ~~N~i~~~la~~~~gv~~viar~ 100 (225)
T COG0569 78 EVNSVLALLALKEFGVPRVIARA 100 (225)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEe
Confidence 555 45555555 5999998844
No 232
>PRK09186 flagellin modification protein A; Provisional
Probab=94.75 E-value=0.19 Score=40.95 Aligned_cols=86 Identities=14% Similarity=0.147 Sum_probs=53.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcE-EEEeeChHHHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA-SVIYVPPPFAAAAIME 135 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dv-aVdfVpp~av~~a~~e 135 (182)
+.++|+|.|++|..|+.+++.+.+.|.+++ .++..... .. .+..++.+.......+. ..|...++.+.+++++
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~--~~~r~~~~--~~--~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGGIVI--AADIDKEA--LN--ELLESLGKEFKSKKLSLVELDITDQESLEEFLSK 76 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEE--EEecChHH--HH--HHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHH
Confidence 356799999999999999999999998888 44443211 10 01111111001112333 5688888888888887
Q ss_pred HHHc--CCCEEEEeC
Q 030169 136 AMEA--ELDLVVCIT 148 (182)
Q Consensus 136 Aie~--GIk~VV~iT 148 (182)
+.+. ++..+|..+
T Consensus 77 ~~~~~~~id~vi~~A 91 (256)
T PRK09186 77 SAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHcCCccEEEECC
Confidence 7653 467777633
No 233
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.75 E-value=0.18 Score=40.76 Aligned_cols=84 Identities=17% Similarity=0.164 Sum_probs=54.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eA 136 (182)
+.+++|.|++|..|..+++.+.+.|.+++ +++..... .. ...+.+.+ ..++ -...|...++.+.++++++
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~~V~--~~~r~~~~--~~--~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~ 75 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGARVV--VTDRNEEA--AE--RVAAEILA---GGRAIAVAADVSDEADVEAAVAAA 75 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEE--EEeCCHHH--HH--HHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHH
Confidence 45799999999999999999999998877 55544311 10 01111111 0111 2345677888888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..||. ..|.
T Consensus 76 ~~~~~~~d~vi~-~ag~ 91 (251)
T PRK07231 76 LERFGSVDILVN-NAGT 91 (251)
T ss_pred HHHhCCCCEEEE-CCCC
Confidence 654 4666776 6665
No 234
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.71 E-value=0.051 Score=47.60 Aligned_cols=85 Identities=14% Similarity=0.288 Sum_probs=54.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCccc--cccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGLPV--FNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~GvPV--y~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
..+|+|+|+ |++|+.+++.+...|.+|. .+++...... ..|... +.+++++.+ ++|+++..+|......-
T Consensus 151 gk~v~IiG~-G~iG~avA~~L~~~G~~V~--v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~--~aDiVint~P~~ii~~~ 225 (287)
T TIGR02853 151 GSNVMVLGF-GRTGMTIARTFSALGARVF--VGARSSADLARITEMGLIPFPLNKLEEKVA--EIDIVINTIPALVLTAD 225 (287)
T ss_pred CCEEEEEcC-hHHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHHCCCeeecHHHHHHHhc--cCCEEEECCChHHhCHH
Confidence 468999999 9999999999999999888 4454431100 012222 345666666 79999999987654432
Q ss_pred HHHHHHcCCCEEEEeC
Q 030169 133 IMEAMEAELDLVVCIT 148 (182)
Q Consensus 133 ~~eAie~GIk~VV~iT 148 (182)
....++.+ ..++.++
T Consensus 226 ~l~~~k~~-aliIDla 240 (287)
T TIGR02853 226 VLSKLPKH-AVIIDLA 240 (287)
T ss_pred HHhcCCCC-eEEEEeC
Confidence 22333332 3455444
No 235
>PRK05993 short chain dehydrogenase; Provisional
Probab=94.68 E-value=0.2 Score=42.11 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=54.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
..+|+|.|++|..|+.+++.+.+.|.+|+ .++..... ++++.+. .++ +..|...++.+.++++++
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi--~~~r~~~~-----------~~~l~~~-~~~~~~~Dl~d~~~~~~~~~~~ 69 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVF--ATCRKEED-----------VAALEAE-GLEAFQLDYAEPESIAALVAQV 69 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEECCHHH-----------HHHHHHC-CceEEEccCCCHHHHHHHHHHH
Confidence 35699999999999999999999999988 44443211 1222221 233 346788888888888888
Q ss_pred HHc---CCCEEEEeCCCC
Q 030169 137 MEA---ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~---GIk~VV~iTeG~ 151 (182)
.+. .+..+|+ ..|+
T Consensus 70 ~~~~~g~id~li~-~Ag~ 86 (277)
T PRK05993 70 LELSGGRLDALFN-NGAY 86 (277)
T ss_pred HHHcCCCccEEEE-CCCc
Confidence 663 5777877 5443
No 236
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.67 E-value=0.19 Score=42.89 Aligned_cols=87 Identities=16% Similarity=0.114 Sum_probs=55.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeEec----------------------------C--ccccc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTEHL----------------------------G--LPVFN 106 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~i~----------------------------G--vPVy~ 106 (182)
..||+|+|+ |-.|..+++.+...| .+|+ -+|+........ + +-.++
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~~Gvg~i~--lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~ 100 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAAAGVGNLT--LLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPIN 100 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCCCEEE--EEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 478999999 999999999999999 5555 555554332100 1 11121
Q ss_pred ------cHHHHHhccCCcEEEEeeChHHHHH-HHHHHHHcCCCEEEEeCC
Q 030169 107 ------SVAEAKAETKANASVIYVPPPFAAA-AIMEAMEAELDLVVCITE 149 (182)
Q Consensus 107 ------Sv~ea~~~~~~DvaVdfVpp~av~~-a~~eAie~GIk~VV~iTe 149 (182)
+++++.+ ++|++|+.+-...+.. +-+.|.++++|.|.+-+.
T Consensus 101 ~~i~~~~~~~~~~--~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~ 148 (240)
T TIGR02355 101 AKLDDAELAALIA--EHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAI 148 (240)
T ss_pred ccCCHHHHHHHhh--cCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 1333444 6788888876655554 446677888888866333
No 237
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.66 E-value=0.012 Score=47.96 Aligned_cols=93 Identities=13% Similarity=0.153 Sum_probs=57.9
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---------------------------ecCccccccHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---------------------------HLGLPVFNSVAEAK 112 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---------------------------i~GvPVy~Sv~ea~ 112 (182)
||.|+|+ |.||+.++..+...|.+++ -+|+....-+ ...+.+..+++++.
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~--l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~ 77 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGYEVT--LYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV 77 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTSEEE--EE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCcEE--EEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh
Confidence 6899999 9999999999999998888 5555432110 11455667777755
Q ss_pred hccCCcEEEEeeChHHHH-HHHHHHHHc----CCCEEEEeCCCCCHHHHHHH
Q 030169 113 AETKANASVIYVPPPFAA-AAIMEAMEA----ELDLVVCITEGIPQHDMVIN 159 (182)
Q Consensus 113 ~~~~~DvaVdfVpp~av~-~a~~eAie~----GIk~VV~iTeG~~~eD~~~l 159 (182)
++|.++..+|.+.-. .-+..-++. ..-..-+ |.+++..++..-
T Consensus 78 ---~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasn-TSsl~i~~la~~ 125 (180)
T PF02737_consen 78 ---DADLVIEAIPEDLELKQELFAELDEICPPDTILASN-TSSLSISELAAA 125 (180)
T ss_dssp ---TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE---SSS-HHHHHTT
T ss_pred ---hhheehhhccccHHHHHHHHHHHHHHhCCCceEEec-CCCCCHHHHHhc
Confidence 489999999987633 333344444 3333444 789998887544
No 238
>PLN02778 3,5-epimerase/4-reductase
Probab=94.65 E-value=0.18 Score=43.56 Aligned_cols=79 Identities=15% Similarity=0.001 Sum_probs=52.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeC------------
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVP------------ 125 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVp------------ 125 (182)
.+||+|.|++|-.|+.+++.+.+.|.+++ .. ... .. -...++..++..++|+++-+.-
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~-~~-~~~-----~~---~~~~v~~~l~~~~~D~ViH~Aa~~~~~~~~~~~~ 78 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFH-YG-SGR-----LE---NRASLEADIDAVKPTHVFNAAGVTGRPNVDWCES 78 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCEEE-Ee-cCc-----cC---CHHHHHHHHHhcCCCEEEECCcccCCCCchhhhh
Confidence 47899999999999999999999998887 32 111 11 1123444455457888773321
Q ss_pred ---------hHHHHHHHHHHHHcCCCEEEE
Q 030169 126 ---------PPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 126 ---------p~av~~a~~eAie~GIk~VV~ 146 (182)
-.....+++.|.++|++.++.
T Consensus 79 ~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~ 108 (298)
T PLN02778 79 HKVETIRANVVGTLTLADVCRERGLVLTNY 108 (298)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 112445777788889997765
No 239
>PRK08328 hypothetical protein; Provisional
Probab=94.65 E-value=0.16 Score=42.93 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=27.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKK 94 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~ 94 (182)
+.+|+|+|+ |-.|..+++.+...| .+|. -+|+..
T Consensus 27 ~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~--lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGV-GGLGSPVAYYLAAAGVGRIL--LIDEQT 61 (231)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEE--EEcCCc
Confidence 467999999 999999999999999 4555 556544
No 240
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.61 E-value=0.14 Score=42.32 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=28.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKK 94 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~ 94 (182)
+.||+|+|+ |.+|..+++.+...|. +|. .+|+..
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~~Gv~~i~--lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAGAGVGTIV--IVDDDH 55 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCCCeEE--EecCCE
Confidence 477999999 9999999999999994 666 667663
No 241
>PRK06523 short chain dehydrogenase; Provisional
Probab=94.60 E-value=0.26 Score=40.39 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=51.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
..+|+|.|++|..|+.+++.+.+.|.+++ .++..... .. .. +++ +-.|...++.+.++++++
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~~v~--~~~r~~~~-~~------------~~--~~~~~~~D~~~~~~~~~~~~~~ 71 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGARVV--TTARSRPD-DL------------PE--GVEFVAADLTTAEGCAAVARAV 71 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCCEEE--EEeCChhh-hc------------CC--ceeEEecCCCCHHHHHHHHHHH
Confidence 46799999999999999999999999888 45443211 00 00 111 334667788888888777
Q ss_pred HHc--CCCEEEEeCCC
Q 030169 137 MEA--ELDLVVCITEG 150 (182)
Q Consensus 137 ie~--GIk~VV~iTeG 150 (182)
.+. ++..+|. ..|
T Consensus 72 ~~~~~~id~vi~-~ag 86 (260)
T PRK06523 72 LERLGGVDILVH-VLG 86 (260)
T ss_pred HHHcCCCCEEEE-CCc
Confidence 665 5777776 555
No 242
>PRK06138 short chain dehydrogenase; Provisional
Probab=94.60 E-value=0.16 Score=41.17 Aligned_cols=84 Identities=15% Similarity=0.076 Sum_probs=54.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eA 136 (182)
+++++|.|++|..|+.+++.+.+.|.+++ .+...... . -...++.....++ -+..|...+..+.+++++.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~~v~--~~~r~~~~--~-----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i 75 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGARVV--VADRDAEA--A-----ERVAAAIAAGGRAFARQGDVGSAEAVEALVDFV 75 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEE--EecCCHHH--H-----HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 45799999999999999999999998887 44433211 0 0111111111112 2345778888888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..|+. ..|.
T Consensus 76 ~~~~~~id~vi~-~ag~ 91 (252)
T PRK06138 76 AARWGRLDVLVN-NAGF 91 (252)
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 765 6777776 5554
No 243
>PRK06180 short chain dehydrogenase; Provisional
Probab=94.58 E-value=0.32 Score=40.72 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=54.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|..|+.+++.+.+.|.+|+ .++.... .++++.+.. .+ -+..|...++.+.++++
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~--~~~r~~~-----------~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~ 70 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVV--GTVRSEA-----------ARADFEALHPDRALARLLDVTDFDAIDAVVA 70 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEE--EEeCCHH-----------HHHHHHhhcCCCeeEEEccCCCHHHHHHHHH
Confidence 35699999999999999999999999988 4443321 112222211 12 23557888888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|. ..|.
T Consensus 71 ~~~~~~~~~d~vv~-~ag~ 88 (277)
T PRK06180 71 DAEATFGPIDVLVN-NAGY 88 (277)
T ss_pred HHHHHhCCCCEEEE-CCCc
Confidence 87765 5777877 6555
No 244
>PRK06057 short chain dehydrogenase; Provisional
Probab=94.56 E-value=0.37 Score=39.63 Aligned_cols=80 Identities=15% Similarity=0.057 Sum_probs=54.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccC-CcEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK-ANASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~-~DvaVdfVpp~av~~a~~eA 136 (182)
..+|+|.|++|..|..+++.+.+.|.+++ .++.... ..++..++.+ --...|...++.+.++++++
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~--~~~r~~~-----------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVV--VGDIDPE-----------AGKAAADEVGGLFVPTDVTDEDAVNALFDTA 73 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEE--EEeCCHH-----------HHHHHHHHcCCcEEEeeCCCHHHHHHHHHHH
Confidence 46799999999999999999999998888 4443221 1122212111 12456778888888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|. ..|.
T Consensus 74 ~~~~~~id~vi~-~ag~ 89 (255)
T PRK06057 74 AETYGSVDIAFN-NAGI 89 (255)
T ss_pred HHHcCCCCEEEE-CCCc
Confidence 654 5777877 6554
No 245
>PRK07890 short chain dehydrogenase; Provisional
Probab=94.54 E-value=0.12 Score=42.14 Aligned_cols=84 Identities=17% Similarity=0.076 Sum_probs=55.0
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC---cEEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA---NASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~---DvaVdfVpp~av~~a~ 133 (182)
++++|+|.|++|-.|+.+++.+.+.|.+|+ .++..... .. ...++... ... =+..|...++....++
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~--~~~r~~~~--~~-----~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~ 73 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVV--LAARTAER--LD-----EVAAEIDD-LGRRALAVPTDITDEDQCANLV 73 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEE--EEeCCHHH--HH-----HHHHHHHH-hCCceEEEecCCCCHHHHHHHH
Confidence 356799999999999999999999999888 55443211 10 01122111 111 2456677788888888
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. .+..+|. ..|.
T Consensus 74 ~~~~~~~g~~d~vi~-~ag~ 92 (258)
T PRK07890 74 ALALERFGRVDALVN-NAFR 92 (258)
T ss_pred HHHHHHcCCccEEEE-CCcc
Confidence 887665 4777777 5554
No 246
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.52 E-value=0.083 Score=45.96 Aligned_cols=102 Identities=20% Similarity=0.167 Sum_probs=65.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-------------Ee------------cCccccccHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-------------EH------------LGLPVFNSVAEAK 112 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-------------~i------------~GvPVy~Sv~ea~ 112 (182)
-.||.|+|+ |.||.-++..+...|.+++.-.++|..... +. ..+.+.+++++ .
T Consensus 5 ~~~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~ 82 (286)
T PRK07819 5 IQRVGVVGA-GQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD-F 82 (286)
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-h
Confidence 358999999 999999999999989888822344443111 00 12336677744 5
Q ss_pred hccCCcEEEEeeChHHHHHH-HHHHHHcCC-C--EE-EEeCCCCCHHHHHHHHHHh
Q 030169 113 AETKANASVIYVPPPFAAAA-IMEAMEAEL-D--LV-VCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 113 ~~~~~DvaVdfVpp~av~~a-~~eAie~GI-k--~V-V~iTeG~~~eD~~~l~~~a 163 (182)
+ ++|+++..+|.+...+- +...++.-. + .| +--|+++|..++..-....
T Consensus 83 ~--~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~ 136 (286)
T PRK07819 83 A--DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRP 136 (286)
T ss_pred C--CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCC
Confidence 5 79999999998776433 323333332 2 22 2237899998887754443
No 247
>PRK08177 short chain dehydrogenase; Provisional
Probab=94.51 E-value=0.17 Score=40.96 Aligned_cols=80 Identities=11% Similarity=0.118 Sum_probs=51.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 138 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAie 138 (182)
.+|+|.|++|..|+.+++.+.+.|.+|+ .++..... .. .+++. .... -..+|...++.+.+++++..+
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~--~~~r~~~~--~~------~~~~~-~~~~-~~~~D~~d~~~~~~~~~~~~~ 69 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVT--ATVRGPQQ--DT------ALQAL-PGVH-IEKLDMNDPASLDQLLQRLQG 69 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEE--EEeCCCcc--hH------HHHhc-cccc-eEEcCCCCHHHHHHHHHHhhc
Confidence 4589999999999999999999999888 55544311 11 01111 1111 123466677778888777765
Q ss_pred cCCCEEEEeCCCC
Q 030169 139 AELDLVVCITEGI 151 (182)
Q Consensus 139 ~GIk~VV~iTeG~ 151 (182)
.++..|+. ..|.
T Consensus 70 ~~id~vi~-~ag~ 81 (225)
T PRK08177 70 QRFDLLFV-NAGI 81 (225)
T ss_pred CCCCEEEE-cCcc
Confidence 57888776 5444
No 248
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.51 E-value=0.22 Score=38.33 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=26.7
Q ss_pred eEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCC
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKK 94 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~ 94 (182)
||+|+|+ |.+|..+++.+...|. ++. .+|+..
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~--ivD~d~ 33 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKIT--LIDFDT 33 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEE--EEcCCC
Confidence 5899999 9999999999999994 565 666654
No 249
>PRK05693 short chain dehydrogenase; Provisional
Probab=94.48 E-value=0.21 Score=41.67 Aligned_cols=78 Identities=15% Similarity=0.093 Sum_probs=55.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eAi 137 (182)
++++|.|++|-.|+.+++.+.+.|.+|+ .++.... .++++.+. +++ +..|...++.+.++++++.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~--~~~r~~~-----------~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~ 67 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVW--ATARKAE-----------DVEALAAA-GFTAVQLDVNDGAALARLAEELE 67 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHHC-CCeEEEeeCCCHHHHHHHHHHHH
Confidence 3589999999999999999999999888 4444321 12222221 233 3478889999999988887
Q ss_pred Hc--CCCEEEEeCCCC
Q 030169 138 EA--ELDLVVCITEGI 151 (182)
Q Consensus 138 e~--GIk~VV~iTeG~ 151 (182)
+. ++..+|. ..|+
T Consensus 68 ~~~~~id~vi~-~ag~ 82 (274)
T PRK05693 68 AEHGGLDVLIN-NAGY 82 (274)
T ss_pred HhcCCCCEEEE-CCCC
Confidence 65 5777887 6664
No 250
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=94.48 E-value=0.072 Score=48.30 Aligned_cols=88 Identities=13% Similarity=0.069 Sum_probs=66.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCeE--------------------------ec--Ccccccc--
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGTE--------------------------HL--GLPVFNS-- 107 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~~--------------------------i~--GvPVy~S-- 107 (182)
.||.|-|| ||.|+.+.+.+.+. +++|| |--||...-+. ++ -+++|..
T Consensus 3 ~ki~INGf-GRIGr~v~r~~~~~~~~~vv-aiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~d 80 (337)
T PTZ00023 3 VKLGINGF-GRIGRLVFRAALEREDVEVV-AINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKD 80 (337)
T ss_pred eEEEEECc-ChHHHHHHHHHHhcCCeEEE-EecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCC
Confidence 48999999 99999999987754 59999 75554321110 11 3556643
Q ss_pred HHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCC
Q 030169 108 VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITE 149 (182)
Q Consensus 108 v~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTe 149 (182)
+++++ .+.++|+++..+......+-+..++++|.+.|++ +.
T Consensus 81 p~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~i-Sa 122 (337)
T PTZ00023 81 PAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIM-SA 122 (337)
T ss_pred hhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEe-CC
Confidence 77765 3458999999999999999999999999999887 53
No 251
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.47 E-value=0.099 Score=50.61 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=71.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCe------------------EecCccccccHHHHHhccCCc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGT------------------EHLGLPVFNSVAEAKAETKAN 118 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~------------------~i~GvPVy~Sv~ea~~~~~~D 118 (182)
..+|+|.|++|..|+++++.+.+++ -+|+ -++.....+ .+.++-=++.+++++++++||
T Consensus 250 gK~vLVTGagGSiGsel~~qil~~~p~~i~--l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd 327 (588)
T COG1086 250 GKTVLVTGGGGSIGSELCRQILKFNPKEII--LFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD 327 (588)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhcCCCEEE--EecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence 4679999999999999999999888 4455 333322111 123444455688888888899
Q ss_pred EEEEe-----------eChHH-------HHHHHHHHHHcCCCEEEEeCC----------CCCHHHHHHHHHHh
Q 030169 119 ASVIY-----------VPPPF-------AAAAIMEAMEAELDLVVCITE----------GIPQHDMVINFTRV 163 (182)
Q Consensus 119 vaVdf-----------Vpp~a-------v~~a~~eAie~GIk~VV~iTe----------G~~~eD~~~l~~~a 163 (182)
++.=. =|.++ ++.+++.|+++|++.+|+++| |.+..-++++...+
T Consensus 328 ~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvmGaTKr~aE~~~~a~ 400 (588)
T COG1086 328 IVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVMGATKRLAEKLFQAA 400 (588)
T ss_pred eEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHhhHHHHHHHHHHHHH
Confidence 87532 22232 456788999999999999886 55556666665555
No 252
>PRK12827 short chain dehydrogenase; Provisional
Probab=94.47 E-value=0.34 Score=39.00 Aligned_cols=87 Identities=18% Similarity=0.163 Sum_probs=55.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|-.|+.+++.+.+.|.+++ +++...... -+-...+.+-......+ +..|...++....+++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~~v~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 79 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGADVI--VLDIHPMRG----RAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALD 79 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEE--EEcCccccc----HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 46899999999999999999999998888 554332110 11111111112111122 2356677888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..||. ..|+
T Consensus 80 ~~~~~~~~~d~vi~-~ag~ 97 (249)
T PRK12827 80 AGVEEFGRLDILVN-NAGI 97 (249)
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 87765 5777776 6664
No 253
>PRK12744 short chain dehydrogenase; Provisional
Probab=94.46 E-value=0.32 Score=40.06 Aligned_cols=87 Identities=15% Similarity=0.079 Sum_probs=54.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
+.+++|.|++|-.|..+++.+.+.|.++++-...+.... .. .....+.++..+.+ +-+|+..++.+.++++
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~---~~---~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 81 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASK---AD---AEETVAAVKAAGAKAVAFQADLTTAAAVEKLFD 81 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccch---HH---HHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHH
Confidence 467999999999999999999999988651222222211 00 11111112211222 3467888888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|. ..|+
T Consensus 82 ~~~~~~~~id~li~-~ag~ 99 (257)
T PRK12744 82 DAKAAFGRPDIAIN-TVGK 99 (257)
T ss_pred HHHHhhCCCCEEEE-CCcc
Confidence 88765 5777776 6675
No 254
>PRK07454 short chain dehydrogenase; Provisional
Probab=94.45 E-value=0.25 Score=40.02 Aligned_cols=84 Identities=20% Similarity=0.199 Sum_probs=55.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~ 133 (182)
+..+++|.|++|..|+.+++.+.+.|.+|+ .++..... .. .+.+.+++. +++ +..|...++....++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~--~~~r~~~~--~~------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 74 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLA--LVARSQDA--LE------ALAAELRSTGVKAAAYSIDLSNPEAIAPGI 74 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEE--EEeCCHHH--HH------HHHHHHHhCCCcEEEEEccCCCHHHHHHHH
Confidence 446799999999999999999999998888 45543211 11 111111111 222 345777888888888
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. ++..+|. ..|.
T Consensus 75 ~~~~~~~~~id~lv~-~ag~ 93 (241)
T PRK07454 75 AELLEQFGCPDVLIN-NAGM 93 (241)
T ss_pred HHHHHHcCCCCEEEE-CCCc
Confidence 887765 5777776 6665
No 255
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.44 E-value=0.078 Score=48.21 Aligned_cols=88 Identities=22% Similarity=0.194 Sum_probs=58.0
Q ss_pred eeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe----EecCcccccc-HHHHHhcc--CCcEEEEeeC
Q 030169 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT----EHLGLPVFNS-VAEAKAET--KANASVIYVP 125 (182)
Q Consensus 53 ~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~----~i~GvPVy~S-v~ea~~~~--~~DvaVdfVp 125 (182)
-.+.|..+|+|+|+ |-.|+..++..+..|.+++ .++.+..-. +...--++.+ -++..+.. .+|+++++++
T Consensus 162 ~~~~pG~~V~I~G~-GGlGh~avQ~Aka~ga~Vi--a~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~ 238 (339)
T COG1064 162 ANVKPGKWVAVVGA-GGLGHMAVQYAKAMGAEVI--AITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG 238 (339)
T ss_pred cCCCCCCEEEEECC-cHHHHHHHHHHHHcCCeEE--EEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC
Confidence 35788899999999 8899999999999999999 555544211 2222223332 12222222 3999999999
Q ss_pred hHHHHHHHHHHHHcCCCEE
Q 030169 126 PPFAAAAIMEAMEAELDLV 144 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~V 144 (182)
....+....+++.|=..|
T Consensus 239 -~~~~~~~l~~l~~~G~~v 256 (339)
T COG1064 239 -PATLEPSLKALRRGGTLV 256 (339)
T ss_pred -hhhHHHHHHHHhcCCEEE
Confidence 666666666666644443
No 256
>PRK07814 short chain dehydrogenase; Provisional
Probab=94.42 E-value=0.23 Score=41.21 Aligned_cols=82 Identities=22% Similarity=0.228 Sum_probs=56.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|-.|..+++.+.+.|.+++ .++..... . ..+.+.++.. +++ .-+|...++.+..+++
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi--~~~r~~~~--~------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 79 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVL--IAARTESQ--L------DEVAEQIRAAGRRAHVVAADLAHPEATAGLAG 79 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE--EEeCCHHH--H------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 46799999999999999999999999988 55543211 0 1111212111 222 2367888899989888
Q ss_pred HHHHc--CCCEEEEeCCC
Q 030169 135 EAMEA--ELDLVVCITEG 150 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG 150 (182)
++.+. ++..||. ..|
T Consensus 80 ~~~~~~~~id~vi~-~Ag 96 (263)
T PRK07814 80 QAVEAFGRLDIVVN-NVG 96 (263)
T ss_pred HHHHHcCCCCEEEE-CCC
Confidence 88775 6888887 455
No 257
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=94.40 E-value=0.094 Score=48.58 Aligned_cols=85 Identities=12% Similarity=0.033 Sum_probs=62.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHh---CCceEEeeccC---------------C----------CCCeE--ec--Cccccc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVVGGVTP---------------K----------KGGTE--HL--GLPVFN 106 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~---g~~IV~AgVdp---------------~----------~~G~~--i~--GvPVy~ 106 (182)
.||+|.|| |+.|+.+.+.+.+. ..+|+ | ||. . ..|+. ++ .++|+.
T Consensus 61 ~kVaInGf-GrIGR~vlr~l~~~~~~~~evv-a-INd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~ 137 (395)
T PLN03096 61 IKVAINGF-GRIGRNFLRCWHGRKDSPLDVV-A-INDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVS 137 (395)
T ss_pred cEEEEECc-CHHHHHHHHHHHhCCCCCeEEE-E-EcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEE
Confidence 68999999 99999999988765 36777 4 321 0 01111 12 366665
Q ss_pred c--HHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 107 S--VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 107 S--v~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
. +++.+ .+.++|+++..+......+.+...+++|.+.|++
T Consensus 138 ~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~i 180 (395)
T PLN03096 138 DRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 180 (395)
T ss_pred cCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEe
Confidence 2 66654 3358999999999999999999999999999887
No 258
>PRK06398 aldose dehydrogenase; Validated
Probab=94.40 E-value=0.31 Score=40.47 Aligned_cols=74 Identities=16% Similarity=0.115 Sum_probs=53.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 138 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAie 138 (182)
.+++|.|++|..|..+++.+.+.|.+|+ .++..... .. . -.-+..|...+..+.++++++.+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~Vi--~~~r~~~~--~~------------~--~~~~~~D~~~~~~i~~~~~~~~~ 68 (258)
T PRK06398 7 KVAIVTGGSQGIGKAVVNRLKEEGSNVI--NFDIKEPS--YN------------D--VDYFKVDVSNKEQVIKGIDYVIS 68 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEE--EEeCCccc--cC------------c--eEEEEccCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999888 44433211 00 0 01234577888888888888876
Q ss_pred c--CCCEEEEeCCCC
Q 030169 139 A--ELDLVVCITEGI 151 (182)
Q Consensus 139 ~--GIk~VV~iTeG~ 151 (182)
. ++..+|+ ..|+
T Consensus 69 ~~~~id~li~-~Ag~ 82 (258)
T PRK06398 69 KYGRIDILVN-NAGI 82 (258)
T ss_pred HcCCCCEEEE-CCCC
Confidence 5 5788887 5554
No 259
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=94.40 E-value=0.22 Score=42.64 Aligned_cols=87 Identities=23% Similarity=0.231 Sum_probs=59.2
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe---EecC-ccccccHHHHHhccCCcEEEEeeChHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT---EHLG-LPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~---~i~G-vPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~ 134 (182)
+++.|.|. |++|..++..+...|.+|+++.-+..+.-. +..+ .=.=.+.+++.+ ..|++++.||-.+..+++.
T Consensus 2 ~~~~i~Gt-GniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~--~aDVVvLAVP~~a~~~v~~ 78 (211)
T COG2085 2 MIIAIIGT-GNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAA--LADVVVLAVPFEAIPDVLA 78 (211)
T ss_pred cEEEEecc-ChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHh--cCCEEEEeccHHHHHhHHH
Confidence 44556665 999999999999999888845443332110 0111 112234677777 7999999999999999999
Q ss_pred HHHHc-CCCEEEEeC
Q 030169 135 EAMEA-ELDLVVCIT 148 (182)
Q Consensus 135 eAie~-GIk~VV~iT 148 (182)
+..+. +=|.||=.|
T Consensus 79 ~l~~~~~~KIvID~t 93 (211)
T COG2085 79 ELRDALGGKIVIDAT 93 (211)
T ss_pred HHHHHhCCeEEEecC
Confidence 99875 535555434
No 260
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.39 E-value=0.16 Score=43.47 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=27.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKK 94 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~ 94 (182)
+.||+|+|+ |..|..+++.+...| .+|. -+|+..
T Consensus 32 ~~~VliiG~-GglGs~va~~La~~Gvg~i~--lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAAAGVGTLT--LVDFDT 66 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCCEEE--EEcCCE
Confidence 478999999 999999999999988 4444 455443
No 261
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=94.37 E-value=0.013 Score=45.05 Aligned_cols=67 Identities=19% Similarity=0.196 Sum_probs=46.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCC-eEe---cCc----cccccHHHHHhccCCcEEEEeeChHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGG-TEH---LGL----PVFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G-~~i---~Gv----PVy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
..+|+|+|+ |.||..+++.+.+.| .++. .+++.... ++. .+. ..+.+.+++.+ ++|+++..+|+..
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~--v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Dvvi~~~~~~~ 93 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELGAAKIV--IVNRTLEKAKALAERFGELGIAIAYLDLEELLA--EADLIINTTPVGM 93 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCCEEE--EEcCCHHHHHHHHHHHhhcccceeecchhhccc--cCCEEEeCcCCCC
Confidence 467999998 999999999998876 4455 55554311 111 121 24556666655 7999999999987
Q ss_pred H
Q 030169 129 A 129 (182)
Q Consensus 129 v 129 (182)
.
T Consensus 94 ~ 94 (155)
T cd01065 94 K 94 (155)
T ss_pred C
Confidence 4
No 262
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.33 E-value=0.27 Score=44.99 Aligned_cols=93 Identities=18% Similarity=0.170 Sum_probs=70.2
Q ss_pred eeecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHH
Q 030169 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 132 (182)
Q Consensus 53 ~li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a 132 (182)
-.++|-.+|.|.|+-| .|+..++..+.+|++++ .++.... .-+|+++....|.-++++--..-.+.
T Consensus 177 ~g~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~--vis~~~~-----------kkeea~~~LGAd~fv~~~~d~d~~~~ 242 (360)
T KOG0023|consen 177 SGLGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVT--VISTSSK-----------KKEEAIKSLGADVFVDSTEDPDIMKA 242 (360)
T ss_pred cCCCCCcEEEEecCcc-cchHHHHHHHHhCcEEE--EEeCCch-----------hHHHHHHhcCcceeEEecCCHHHHHH
Confidence 4566899999999956 99999999999999999 6666542 23677887888999999954555566
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 133 IMEAMEAELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 133 ~~eAie~GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
+..+.+-++..|..+ +++.++.+.++.
T Consensus 243 ~~~~~dg~~~~v~~~----a~~~~~~~~~~l 269 (360)
T KOG0023|consen 243 IMKTTDGGIDTVSNL----AEHALEPLLGLL 269 (360)
T ss_pred HHHhhcCcceeeeec----cccchHHHHHHh
Confidence 678888888888884 444444444444
No 263
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.33 E-value=0.1 Score=48.42 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=56.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-EecCccccccHHHHHhccCCcEEEEeeChHHHHHH-HH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA-IM 134 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a-~~ 134 (182)
+..+|+|+|+ |..|..+++.+...|.++++..++|.+... ...|+.+. +++++.+ .+|++++.+....+.+. ..
T Consensus 201 ~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~--~aDVVI~atG~~~~i~~~~l 276 (413)
T cd00401 201 AGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVK--EGDIFVTTTGNKDIITGEHF 276 (413)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHc--CCCEEEECCCCHHHHHHHHH
Confidence 4567999999 999999999999999888844556654221 01255443 3467666 78999999875554443 25
Q ss_pred HHHHcCCCEE
Q 030169 135 EAMEAELDLV 144 (182)
Q Consensus 135 eAie~GIk~V 144 (182)
++++.|-..+
T Consensus 277 ~~mk~Ggilv 286 (413)
T cd00401 277 EQMKDGAIVC 286 (413)
T ss_pred hcCCCCcEEE
Confidence 5555555443
No 264
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=94.31 E-value=0.15 Score=42.15 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=54.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eAi 137 (182)
++++|.|++|..|+.+++.+.+.|.+++ .++..... .-...+++.+..++ -+..|...++.+.++++++.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~--~~~r~~~~-------~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~ 71 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVV--ISSRNEEN-------LEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW 71 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEE--EEeCCHHH-------HHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH
Confidence 4799999999999999999999998877 44443211 01112222111112 13456778888888888877
Q ss_pred Hc--CCCEEEEeCCCC
Q 030169 138 EA--ELDLVVCITEGI 151 (182)
Q Consensus 138 e~--GIk~VV~iTeG~ 151 (182)
+. ++..+|+ ..|+
T Consensus 72 ~~~g~id~li~-naG~ 86 (259)
T PRK08340 72 ELLGGIDALVW-NAGN 86 (259)
T ss_pred HhcCCCCEEEE-CCCC
Confidence 64 5777777 6665
No 265
>PLN02206 UDP-glucuronate decarboxylase
Probab=94.26 E-value=0.11 Score=47.96 Aligned_cols=87 Identities=14% Similarity=0.117 Sum_probs=54.3
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--Ee------cCcc-cccc-HHHHHhccCCcEEEEeeC
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--EH------LGLP-VFNS-VAEAKAETKANASVIYVP 125 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--~i------~GvP-Vy~S-v~ea~~~~~~DvaVdfVp 125 (182)
.+.+||+|.|++|-.|+.+++.+++.|.+|+ + ++....+. .. .++. +..+ +++++. ++|+++-+.-
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~-~-ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~--~~D~ViHlAa 192 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGDSVI-V-VDNFFTGRKENVMHHFSNPNFELIRHDVVEPILL--EVDQIYHLAC 192 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcCEEE-E-EeCCCccchhhhhhhccCCceEEEECCccChhhc--CCCEEEEeee
Confidence 3668999999999999999999999999998 4 43211110 00 0111 1112 333344 6888776652
Q ss_pred ----------hH--------HHHHHHHHHHHcCCCEEEE
Q 030169 126 ----------PP--------FAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 126 ----------p~--------av~~a~~eAie~GIk~VV~ 146 (182)
|. ....+++.|.+.|++.|.+
T Consensus 193 ~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~ 231 (442)
T PLN02206 193 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT 231 (442)
T ss_pred ecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 11 1356677788889876655
No 266
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=94.23 E-value=0.23 Score=49.66 Aligned_cols=109 Identities=13% Similarity=-0.031 Sum_probs=69.1
Q ss_pred CCceEEEEccCCCCchhhhHHHHH--------hC--CceEEeeccCCCCCeEecCcc---------------ccccHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIE--------YG--TKMVVGGVTPKKGGTEHLGLP---------------VFNSVAEA 111 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~--------~g--~~IV~AgVdp~~~G~~i~GvP---------------Vy~Sv~ea 111 (182)
+..+|++.|+ |.-|+.+.+.+.+ +| ++|+ +-.+....--...|+. -.+.+.|.
T Consensus 457 ~~i~i~l~G~-G~VG~~l~~~l~~~~~~l~~~~g~~~~v~-~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~e~ 534 (810)
T PRK09466 457 KRIGLVLFGK-GNIGSRWLELFAREQSTLSARTGFEFVLV-GVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLFLW 534 (810)
T ss_pred ceEEEEEEec-CCChHHHHHHHHHHHHHHHHhcCCCEEEE-EEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHHHH
Confidence 4578999999 9999999886652 35 4455 4333322100111221 11122333
Q ss_pred HhccCC--cEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCC---CHHHHHHHHHHhcccch
Q 030169 112 KAETKA--NASVIYVPPPFAAAAIMEAMEAELDLVVCITEGI---PQHDMVINFTRVNILLV 168 (182)
Q Consensus 112 ~~~~~~--DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~---~~eD~~~l~~~ak~ipv 168 (182)
+.+.++ +++|+.++.........+|+++|+++|-+ -... +.+...+|.++|++-.+
T Consensus 535 i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVta-NK~~~a~~~~~~~~l~~~a~~~~~ 595 (810)
T PRK09466 535 LRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISA-NKLAGSSPSNFYRQIKDAFAKTGR 595 (810)
T ss_pred HhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcC-CcccccccHHHHHHHHHHHHHcCC
Confidence 433333 59999999988888888999999998755 3322 45788899999875443
No 267
>PLN02306 hydroxypyruvate reductase
Probab=94.22 E-value=0.18 Score=46.22 Aligned_cols=99 Identities=14% Similarity=0.069 Sum_probs=62.4
Q ss_pred CceEEEEccCCCCchhhhHHHH-HhCCceEEeeccCCCCCe-E----ec------------CccccccHHHHHhccCCcE
Q 030169 58 NTRVICQGITGKNGTFHTEQAI-EYGTKMVVGGVTPKKGGT-E----HL------------GLPVFNSVAEAKAETKANA 119 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~-~~g~~IV~AgVdp~~~G~-~----i~------------GvPVy~Sv~ea~~~~~~Dv 119 (182)
..+|.|+|+ |+.|+.+++.+. .+|++|+ ++||..... + .. ++..+.+++|+++ +.|+
T Consensus 165 gktvGIiG~-G~IG~~vA~~l~~~fGm~V~--~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~--~sDi 239 (386)
T PLN02306 165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLI--YYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR--EADV 239 (386)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCEEE--EECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHh--hCCE
Confidence 456999999 999999999985 8999999 888764211 0 00 1122458999998 7999
Q ss_pred EEEeeChH-HHHHHHHHHHHcCCC---EEEEeCCCCCHHHHHHHHHH
Q 030169 120 SVIYVPPP-FAAAAIMEAMEAELD---LVVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 120 aVdfVpp~-av~~a~~eAie~GIk---~VV~iTeG~~~eD~~~l~~~ 162 (182)
+++.+|-. .....+.+..=.-+| .+|+++-|=-+ |...|.++
T Consensus 240 V~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lV-De~AL~~A 285 (386)
T PLN02306 240 ISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVI-DEVALVEH 285 (386)
T ss_pred EEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCcccc-CHHHHHHH
Confidence 99988843 333333332222222 46775555444 44444444
No 268
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=94.22 E-value=0.18 Score=50.33 Aligned_cols=111 Identities=14% Similarity=0.059 Sum_probs=71.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHHh-------C--CceEEeeccCCCCCeEecCccc---------------cccHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEY-------G--TKMVVGGVTPKKGGTEHLGLPV---------------FNSVAEAK 112 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~-------g--~~IV~AgVdp~~~G~~i~GvPV---------------y~Sv~ea~ 112 (182)
+..+|.+.|+ |.-|+.+.+.+.+. | ++|+ +-.+....--...|+.. .+.+-|.+
T Consensus 464 ~~~~i~l~G~-G~VG~~~~~~l~~~~~~l~~~~~~l~v~-~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (819)
T PRK09436 464 QVLDVFVIGV-GGVGGALLEQIKRQQPWLKKKNIDLRVC-GIANSRKMLLDEHGIDLDNWREELAEAGEPFDLDRLIRLV 541 (819)
T ss_pred ccccEEEEec-CHHHHHHHHHHHHHHHHHHhcCCcEEEE-EEEcCCccccCCCCCCHHHHHHHHhhccCCCCHHHHHHHH
Confidence 5788999998 99999998876531 3 4455 43332221000112221 11223333
Q ss_pred hcc--CCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCC---CHHHHHHHHHHhcccchhc
Q 030169 113 AET--KANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGI---PQHDMVINFTRVNILLVAF 170 (182)
Q Consensus 113 ~~~--~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~---~~eD~~~l~~~ak~ipv~~ 170 (182)
... ..|++|+.++-....+...+|+++|+++|-+ -.+. |.++..+|.++|++-.+.+
T Consensus 542 ~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVta-NK~~~a~~~~~~~el~~~a~~~~~~~ 603 (819)
T PRK09436 542 KEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTP-NKKANTSSYAYYHQLREAARKSRRKF 603 (819)
T ss_pred hhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcC-CchhccCCHHHHHHHHHHHHHcCCeE
Confidence 322 3599999999988888889999999999855 3332 3368899999998766544
No 269
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.21 E-value=0.31 Score=39.57 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=54.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCCc-EEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~D-vaVdfVpp~av~~a~~e 135 (182)
+.+|+|.|++|..|+.+++.+.+.|.+++ .++..... .. ....+.... .++. +..|+..++.+.+++++
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~--~~~r~~~~--~~-----~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 74 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVV--IADLNDEA--AA-----AAAEALQKAGGKAIGVAMDVTDEEAINAGIDY 74 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEE--EEeCCHHH--HH-----HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 35799999999999999999999998888 55544321 00 011121110 0121 44577888888888887
Q ss_pred HHHc--CCCEEEEeCCC
Q 030169 136 AMEA--ELDLVVCITEG 150 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG 150 (182)
..+. ++..||. ..|
T Consensus 75 ~~~~~~~~d~vi~-~a~ 90 (258)
T PRK12429 75 AVETFGGVDILVN-NAG 90 (258)
T ss_pred HHHHcCCCCEEEE-CCC
Confidence 7665 6777777 444
No 270
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=94.21 E-value=0.19 Score=43.57 Aligned_cols=87 Identities=16% Similarity=0.098 Sum_probs=61.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCcccc-------ccHHHHHhccCCcEEEEeeChHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVF-------NSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy-------~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
.++|+|.|.| ..|+.+++.+.+.|.++++.-+..... .+..+++++ ..+++.+.++++|++||.++|-+..
T Consensus 2 ~~~IlvlgGT-~egr~la~~L~~~g~~v~~Svat~~g~-~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~ 79 (248)
T PRK08057 2 MPRILLLGGT-SEARALARALAAAGVDIVLSLAGRTGG-PADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQ 79 (248)
T ss_pred CceEEEEech-HHHHHHHHHHHhCCCeEEEEEccCCCC-cccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHH
Confidence 3578999975 488999999988887777233333221 223355554 3377778788999999999998765
Q ss_pred ---HHHHHHHHcCCCEEEE
Q 030169 131 ---AAIMEAMEAELDLVVC 146 (182)
Q Consensus 131 ---~a~~eAie~GIk~VV~ 146 (182)
.+.+-|-+.||+.+=.
T Consensus 80 is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 80 ISANAAAACRALGIPYLRL 98 (248)
T ss_pred HHHHHHHHHHHhCCcEEEE
Confidence 6677777889998743
No 271
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=94.19 E-value=0.16 Score=46.42 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=59.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC--CCeEe-----------------cCcccccc--HHHHHhccCC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK--GGTEH-----------------LGLPVFNS--VAEAKAETKA 117 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~--~G~~i-----------------~GvPVy~S--v~ea~~~~~~ 117 (182)
+||.|+|. |.||..++..+. .|.+++ |+|... ...-. .+.-...+ .+++.+ ++
T Consensus 1 mkI~VIGl-GyvGl~~A~~lA-~G~~Vi--gvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~--~a 74 (388)
T PRK15057 1 MKITISGT-GYVGLSNGLLIA-QNHEVV--ALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYR--DA 74 (388)
T ss_pred CEEEEECC-CHHHHHHHHHHH-hCCcEE--EEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhc--CC
Confidence 47999998 999999995554 588888 655433 11000 11112122 456555 79
Q ss_pred cEEEEeeChH-----------HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 118 NASVIYVPPP-----------FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 118 DvaVdfVpp~-----------av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
|++++.||.. .+.++++...+..-..+|++.+=+|+.-.+++.+...+
T Consensus 75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~ 133 (388)
T PRK15057 75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRT 133 (388)
T ss_pred CEEEEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhc
Confidence 9999999954 44555544444222223333555666666666665443
No 272
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=94.19 E-value=0.18 Score=45.75 Aligned_cols=106 Identities=17% Similarity=0.057 Sum_probs=65.7
Q ss_pred CCceEEEEccCCCCchhhhHHHHHh--------C--CceEEeeccCCCCCe-EecCcc---ccccH-----HHHHhccCC
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEY--------G--TKMVVGGVTPKKGGT-EHLGLP---VFNSV-----AEAKAETKA 117 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~--------g--~~IV~AgVdp~~~G~-~i~GvP---Vy~Sv-----~ea~~~~~~ 117 (182)
+..||.|.|+ |.-|+.+.+.+.+. | ++++ +..+....-. .....+ ...+. .+.....++
T Consensus 2 ~~v~v~l~G~-G~VG~~~~~il~~~~~~l~~~~g~~i~v~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (333)
T COG0460 2 KTVKVGLLGL-GTVGSGVLEILAEKQEELRKRAGIEIRVV-AVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDI 79 (333)
T ss_pred ceEEEEEEcc-CchhHHHHHHHHHhHHHHHhhcCCceEEE-EEEeccchhcccccccchhhheecccccccHhhhccccC
Confidence 3578999999 99999998877753 3 4455 4444433111 122222 22234 555555578
Q ss_pred cEEEEeeCh--HHH--HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 118 NASVIYVPP--PFA--AAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 118 DvaVdfVpp--~av--~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
|+.+..++. ..+ .+...+|+++|+++|=. =.+.=-..-.+|.++|++
T Consensus 80 dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTa-NK~~lA~~~~el~~~A~~ 130 (333)
T COG0460 80 DVVVELVGGDVEPAEPADLYLKALENGKHVVTA-NKALLALHYHELREAAEK 130 (333)
T ss_pred CEEEecCcccCCchhhHHHHHHHHHcCCeEECC-CchHhHhhHHHHHHHHHH
Confidence 888887776 334 48999999999998733 222222236677777765
No 273
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.17 E-value=0.37 Score=38.47 Aligned_cols=81 Identities=19% Similarity=0.135 Sum_probs=51.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEE---EEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANAS---VIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~Dva---VdfVpp~av~~a~~ 134 (182)
.++|+|.|++|..|+.+++.+.+.|.+|+ +++..... .. .+.+..++...++. .|+..+..+.++++
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~--~~~r~~~~--~~------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVV--IYDSNEEA--AE------ALAAELRAAGGEARVLVFDVSDEAAVRALIE 74 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEE--EEeCChhH--HH------HHHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 35799999999999999999999998866 66554311 10 11111111122222 46777887878777
Q ss_pred HHHHc--CCCEEEEeC
Q 030169 135 EAMEA--ELDLVVCIT 148 (182)
Q Consensus 135 eAie~--GIk~VV~iT 148 (182)
+..+. .+..|+..+
T Consensus 75 ~~~~~~~~id~vi~~a 90 (246)
T PRK05653 75 AAVEAFGALDILVNNA 90 (246)
T ss_pred HHHHHhCCCCEEEECC
Confidence 76543 567777633
No 274
>PLN02572 UDP-sulfoquinovose synthase
Probab=94.16 E-value=0.41 Score=44.03 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=26.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMV 86 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV 86 (182)
++|+|.|++|-.|+.+++.+.+.|.+|+
T Consensus 48 k~VLVTGatGfIGs~Lv~~L~~~G~~V~ 75 (442)
T PLN02572 48 KKVMVIGGDGYCGWATALHLSKRGYEVA 75 (442)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEE
Confidence 5799999999999999999999998888
No 275
>PRK05884 short chain dehydrogenase; Provisional
Probab=94.13 E-value=0.27 Score=40.27 Aligned_cols=74 Identities=19% Similarity=0.109 Sum_probs=47.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eAi 137 (182)
+|++|.|++|.+|+.+++.+.+.|.+++ .++.... .++++.++.+.+ +..|...++.+.+++++..
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~--~~~r~~~-----------~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 67 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVT--LVGARRD-----------DLEVAAKELDVDAIVCDNTDPASLEEARGLFP 67 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHHhccCcEEecCCCCHHHHHHHHHHHh
Confidence 4799999999999999999999998888 4444321 112222211122 2245666777766665543
Q ss_pred HcCCCEEEE
Q 030169 138 EAELDLVVC 146 (182)
Q Consensus 138 e~GIk~VV~ 146 (182)
+ ++..+|+
T Consensus 68 ~-~id~lv~ 75 (223)
T PRK05884 68 H-HLDTIVN 75 (223)
T ss_pred h-cCcEEEE
Confidence 2 5777776
No 276
>PLN02583 cinnamoyl-CoA reductase
Probab=94.12 E-value=0.43 Score=40.84 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=28.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeec
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGV 90 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgV 90 (182)
..+|+|.|++|..|+.+++.+.+.|.+|+ +.+
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~-~~~ 37 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVH-AAV 37 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEE-EEE
Confidence 45799999999999999999999999988 543
No 277
>PLN02494 adenosylhomocysteinase
Probab=94.12 E-value=0.095 Score=49.68 Aligned_cols=100 Identities=16% Similarity=0.158 Sum_probs=64.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-EecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eA 136 (182)
..+|+|+|+ |+.|+.+++.+..+|.+|++-.++|.+... ...|+.+. +++|+++ ..|+++..+....+. ..+.
T Consensus 254 GKtVvViGy-G~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~--~ADVVI~tTGt~~vI--~~e~ 327 (477)
T PLN02494 254 GKVAVICGY-GDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVS--EADIFVTTTGNKDII--MVDH 327 (477)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHh--hCCEEEECCCCccch--HHHH
Confidence 467999999 999999999999999998833556653211 12356554 5788887 789999866644322 1333
Q ss_pred HHc-CCCEEEEeCCCC-CHHHHHHHHHHh
Q 030169 137 MEA-ELDLVVCITEGI-PQHDMVINFTRV 163 (182)
Q Consensus 137 ie~-GIk~VV~iTeG~-~~eD~~~l~~~a 163 (182)
++. +-..+++-+.++ ++=|...|.+++
T Consensus 328 L~~MK~GAiLiNvGr~~~eID~~aL~~~~ 356 (477)
T PLN02494 328 MRKMKNNAIVCNIGHFDNEIDMLGLETYP 356 (477)
T ss_pred HhcCCCCCEEEEcCCCCCccCHHHHhhcc
Confidence 333 222233323443 677888888773
No 278
>PRK07985 oxidoreductase; Provisional
Probab=94.11 E-value=0.42 Score=40.86 Aligned_cols=85 Identities=15% Similarity=0.105 Sum_probs=55.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+++ . ++....... ...+++..++...+ +..|...++.+.++++
T Consensus 49 ~k~vlITGas~gIG~aia~~L~~~G~~Vi-~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 120 (294)
T PRK07985 49 DRKALVTGGDSGIGRAAAIAYAREGADVA-I-SYLPVEEED------AQDVKKIIEECGRKAVLLPGDLSDEKFARSLVH 120 (294)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEE-E-ecCCcchhh------HHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHH
Confidence 35799999999999999999999999988 3 333221100 11223322221212 4567888899999988
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|. ..|+
T Consensus 121 ~~~~~~g~id~lv~-~Ag~ 138 (294)
T PRK07985 121 EAHKALGGLDIMAL-VAGK 138 (294)
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 88765 5777776 4443
No 279
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.02 E-value=0.62 Score=37.22 Aligned_cols=85 Identities=22% Similarity=0.212 Sum_probs=53.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCCc-EEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~D-vaVdfVpp~av~~a~~e 135 (182)
+.+++|.|++|..|+.+++.+.+.|.++++...++.. . . -.+ .+++... .++. +-.|...++.+.+++++
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~-~--~--~~~---~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQGANVVINYASSEA-G--A--EAL---VAEIGALGGKALAVQGDVSDAESVERAVDE 76 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchh-H--H--HHH---HHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 4579999999999999999999999888613333221 1 0 011 1121111 1222 22377888888888887
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
..+. ++..|+. ..|.
T Consensus 77 ~~~~~~~id~vi~-~ag~ 93 (248)
T PRK05557 77 AKAEFGGVDILVN-NAGI 93 (248)
T ss_pred HHHHcCCCCEEEE-CCCc
Confidence 7664 6777877 5554
No 280
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=94.01 E-value=0.08 Score=47.93 Aligned_cols=88 Identities=16% Similarity=0.113 Sum_probs=62.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCCCCeE----------------------------ec--Ccccc
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKKGGTE----------------------------HL--GLPVF 105 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~~G~~----------------------------i~--GvPVy 105 (182)
+..||.|.|+ |++|+.+.+.+.+ .+.+++ |-.||...-+. ++ .++|+
T Consensus 4 ~~lrVaI~G~-GrIGr~~~r~~~~~~~velv-aI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~ 81 (338)
T PLN02358 4 KKIRIGINGF-GRIGRLVARVVLQRDDVELV-AVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 81 (338)
T ss_pred CceEEEEEee-cHHHHHHHHHHhhCCCcEEE-EEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEE
Confidence 3579999999 9999999997775 469999 76665332211 01 12232
Q ss_pred cc--HHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 106 NS--VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 106 ~S--v~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
.. .++.+ .+.++|+++..+......+.+..++++|.+.|++
T Consensus 82 ~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~Vii 125 (338)
T PLN02358 82 GIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVI 125 (338)
T ss_pred EcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEe
Confidence 22 22322 1247999999999999999999999999988877
No 281
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=94.01 E-value=0.2 Score=46.30 Aligned_cols=65 Identities=23% Similarity=0.239 Sum_probs=44.1
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC--CeEecC-cc---------------ccccHHHHHhccCCc
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG--GTEHLG-LP---------------VFNSVAEAKAETKAN 118 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~--G~~i~G-vP---------------Vy~Sv~ea~~~~~~D 118 (182)
+.+||.|+|. |.||.-.+..+.+ +.+++ |+|.... ..-..| .| .+.+..++.+ ++|
T Consensus 5 ~~mkI~vIGl-GyvGlpmA~~la~-~~~V~--g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~--~ad 78 (425)
T PRK15182 5 DEVKIAIIGL-GYVGLPLAVEFGK-SRQVV--GFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIK--ECN 78 (425)
T ss_pred CCCeEEEECc-CcchHHHHHHHhc-CCEEE--EEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHc--CCC
Confidence 3489999998 9999999888665 68888 6665441 111112 22 3445445555 799
Q ss_pred EEEEeeChH
Q 030169 119 ASVIYVPPP 127 (182)
Q Consensus 119 vaVdfVpp~ 127 (182)
++++.||-.
T Consensus 79 vvii~Vptp 87 (425)
T PRK15182 79 FYIITVPTP 87 (425)
T ss_pred EEEEEcCCC
Confidence 999999954
No 282
>PRK08267 short chain dehydrogenase; Provisional
Probab=93.98 E-value=0.16 Score=41.81 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=54.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc---cCC-cEEEEeeChHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE---TKA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~---~~~-DvaVdfVpp~av~~a~~ 134 (182)
++++|.|++|..|+.+++.+.+.|.+++ .+++.... ++++.+. ..+ -+.+|....+.+.++++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~--~~~r~~~~-----------~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 68 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVG--AYDINEAG-----------LAALAAELGAGNAWTGALDVTDRAAWDAALA 68 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEE--EEeCCHHH-----------HHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 3599999999999999999999998887 45443211 2222111 122 23567888898888888
Q ss_pred HHHHc---CCCEEEEeCCCC
Q 030169 135 EAMEA---ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~---GIk~VV~iTeG~ 151 (182)
++.+. .+..+|. ..|.
T Consensus 69 ~~~~~~~~~id~vi~-~ag~ 87 (260)
T PRK08267 69 DFAAATGGRLDVLFN-NAGI 87 (260)
T ss_pred HHHHHcCCCCCEEEE-CCCC
Confidence 87653 6777877 5554
No 283
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=93.98 E-value=0.21 Score=47.75 Aligned_cols=81 Identities=15% Similarity=0.013 Sum_probs=55.4
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeC----------
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVP---------- 125 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVp---------- 125 (182)
.+.+||+|.|++|-.|+.+++.+.+.|.++. -.. + .+.=...+.+.++..+||++|-+.-
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~-~~~-----~----~l~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~ 447 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGIAYE-YGK-----G----RLEDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWC 447 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCCeEE-eec-----c----ccccHHHHHHHHHhhCCCEEEECCcccCCCCCChH
Confidence 3568999999999999999999998887773 121 1 1111233555566667888874431
Q ss_pred -----------hHHHHHHHHHHHHcCCCEEEE
Q 030169 126 -----------PPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 126 -----------p~av~~a~~eAie~GIk~VV~ 146 (182)
-..+..+++.|.+.|++.++.
T Consensus 448 ~~~~~~~~~~N~~gt~~l~~a~~~~g~~~v~~ 479 (668)
T PLN02260 448 ESHKVETIRANVVGTLTLADVCRENGLLMMNF 479 (668)
T ss_pred HhCHHHHHHHHhHHHHHHHHHHHHcCCeEEEE
Confidence 123556788888999987765
No 284
>PRK06841 short chain dehydrogenase; Provisional
Probab=93.97 E-value=0.22 Score=40.66 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=54.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eA 136 (182)
+.+|+|.|++|..|..+++.+.+.|.+++ .++...... ....+. ....+ =...|...+..+.++++++
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~~Vi--~~~r~~~~~--------~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~ 83 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGARVA--LLDRSEDVA--------EVAAQL-LGGNAKGLVCDVSDSQSVEAAVAAV 83 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE--EEeCCHHHH--------HHHHHh-hCCceEEEEecCCCHHHHHHHHHHH
Confidence 46799999999999999999999998887 555433110 001111 11111 2346778888888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|. ..|.
T Consensus 84 ~~~~~~~d~vi~-~ag~ 99 (255)
T PRK06841 84 ISAFGRIDILVN-SAGV 99 (255)
T ss_pred HHHhCCCCEEEE-CCCC
Confidence 765 5777776 5554
No 285
>PRK07825 short chain dehydrogenase; Provisional
Probab=93.95 E-value=0.48 Score=39.34 Aligned_cols=79 Identities=16% Similarity=0.116 Sum_probs=52.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-CCc-EEEEeeChHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~D-vaVdfVpp~av~~a~~eA 136 (182)
.+++|.|++|..|+.+++.+.+.|.+++ .++.... .++++.++. .+. +..|+..++.+.++++++
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~--~~~r~~~-----------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVA--IGDLDEA-----------LAKETAAELGLVVGGPLDVTDPASFAAFLDAV 72 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEE--EEECCHH-----------HHHHHHHHhccceEEEccCCCHHHHHHHHHHH
Confidence 5699999999999999999999998877 3332210 011111111 122 345778888888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|+ ..|+
T Consensus 73 ~~~~~~id~li~-~ag~ 88 (273)
T PRK07825 73 EADLGPIDVLVN-NAGV 88 (273)
T ss_pred HHHcCCCCEEEE-CCCc
Confidence 764 6777776 6664
No 286
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=93.89 E-value=0.086 Score=47.67 Aligned_cols=86 Identities=15% Similarity=0.052 Sum_probs=63.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCe----------------E---------ec--Cccccc--cH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGT----------------E---------HL--GLPVFN--SV 108 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~----------------~---------i~--GvPVy~--Sv 108 (182)
.||.|-|| ||.|+.+.+.+.+. +++|| |--|+..... + ++ .+.|+. ++
T Consensus 3 ~~i~inGf-GRIGr~~~r~~~~~~~~~vv-aiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp 80 (331)
T PRK15425 3 IKVGINGF-GRIGRIVFRAAQKRSDIEIV-AINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP 80 (331)
T ss_pred eEEEEEee-ChHHHHHHHHHHHCCCCEEE-EEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCCh
Confidence 48999999 99999999987754 59999 6433221000 0 11 355553 46
Q ss_pred HHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 109 AEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 109 ~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
++.. .+.++|+++..+......+-+..++++|.+.|++
T Consensus 81 ~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~i 119 (331)
T PRK15425 81 ANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119 (331)
T ss_pred hhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEe
Confidence 6654 3458999999999998999999999999998887
No 287
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.88 E-value=0.46 Score=38.24 Aligned_cols=83 Identities=14% Similarity=0.082 Sum_probs=53.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
..+|+|.|++|..|+.+++.+.+.|.+|+ .++..... .. .. ..+..+...++ +..|...+..+.+.++++
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~--~~~r~~~~--~~--~~---~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVA--ITARDQKE--LE--EA---AAELNNKGNVLGLAADVRDEADVQRAVDAI 76 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEE--EeeCCHHH--HH--HH---HHHHhccCcEEEEEccCCCHHHHHHHHHHH
Confidence 46799999999999999999998898888 44433211 00 01 11111111222 234677788888888877
Q ss_pred HHc--CCCEEEEeCCC
Q 030169 137 MEA--ELDLVVCITEG 150 (182)
Q Consensus 137 ie~--GIk~VV~iTeG 150 (182)
.+. ++..||. ..|
T Consensus 77 ~~~~~~~d~vi~-~ag 91 (237)
T PRK07326 77 VAAFGGLDVLIA-NAG 91 (237)
T ss_pred HHHcCCCCEEEE-CCC
Confidence 664 6788887 444
No 288
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.83 E-value=0.49 Score=34.67 Aligned_cols=84 Identities=15% Similarity=0.193 Sum_probs=57.5
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEE---eeChHHHHHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVI---YVPPPFAAAAIMEA 136 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVd---fVpp~av~~a~~eA 136 (182)
+|+|+|....+-....+.+.++|++++ -. -.++|. -+--..+++.+. ++|++|+ |+.+.....+-++|
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~--~h-g~~~~~----~~~~~~l~~~i~--~aD~VIv~t~~vsH~~~~~vk~~a 71 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLI--HH-GRDGGD----EKKASRLPSKIK--KADLVIVFTDYVSHNAMWKVKKAA 71 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEE--EE-ecCCCC----ccchhHHHHhcC--CCCEEEEEeCCcChHHHHHHHHHH
Confidence 589999544787888888889998887 33 112120 111112445455 6898876 46788999999999
Q ss_pred HHcCCCEEEEeCCCCC
Q 030169 137 MEAELDLVVCITEGIP 152 (182)
Q Consensus 137 ie~GIk~VV~iTeG~~ 152 (182)
-+.++|.+.+=+.|++
T Consensus 72 kk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 72 KKYGIPIIYSRSRGVS 87 (97)
T ss_pred HHcCCcEEEECCCCHH
Confidence 9999999988445554
No 289
>PRK12939 short chain dehydrogenase; Provisional
Probab=93.82 E-value=0.57 Score=37.79 Aligned_cols=84 Identities=20% Similarity=0.156 Sum_probs=54.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCCc-EEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~D-vaVdfVpp~av~~a~~e 135 (182)
.++++|.|++|..|+.+++.+.+.|.+++ .++..... .. ...+++... .+++ ..+|+..++.+.+++++
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~--~~~r~~~~--~~-----~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGATVA--FNDGLAAE--AR-----ELAAALEAAGGRAHAIAADLADPASVQRFFDA 77 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCEEE--EEeCCHHH--HH-----HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 46799999999999999999999999888 44432211 10 111221111 1222 24577888888888887
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. ++..++. ..|.
T Consensus 78 ~~~~~~~id~vi~-~ag~ 94 (250)
T PRK12939 78 AAAALGGLDGLVN-NAGI 94 (250)
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 7765 5777777 5555
No 290
>PRK06500 short chain dehydrogenase; Provisional
Probab=93.80 E-value=0.45 Score=38.45 Aligned_cols=80 Identities=20% Similarity=0.142 Sum_probs=52.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+++ .++.... .+++..++...+ +-.|....+...++.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~v~--~~~r~~~-----------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGARVA--ITGRDPA-----------SLEAARAELGESALVIRADAGDVAAQKALAQ 72 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE--EecCCHH-----------HHHHHHHHhCCceEEEEecCCCHHHHHHHHH
Confidence 35799999999999999999999998888 5544321 122222221112 2346677777777777
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
+..+. ++..+|. ..|.
T Consensus 73 ~~~~~~~~id~vi~-~ag~ 90 (249)
T PRK06500 73 ALAEAFGRLDAVFI-NAGV 90 (249)
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 66654 5677776 4443
No 291
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.74 E-value=0.64 Score=37.82 Aligned_cols=84 Identities=14% Similarity=0.045 Sum_probs=54.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCCc-EEEEeeChHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~D-vaVdfVpp~av~~a~~eA 136 (182)
+.|+|.|++|-.|+.+++.+.+.|.+++ .++..... . .-...++..+. .+++ +-.|+..++...++++++
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~~vi--~~~r~~~~-~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGFDLA--INDRPDDE-E-----LAATQQELRALGVEVIFFPADVADLSAHEAMLDAA 74 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCEEE--EEecCchh-H-----HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 4588999999999999999999998888 45533211 0 00111111111 1222 246788888888888888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. .+..||. ..|+
T Consensus 75 ~~~~~~id~vi~-~ag~ 90 (256)
T PRK12745 75 QAAWGRIDCLVN-NAGV 90 (256)
T ss_pred HHhcCCCCEEEE-CCcc
Confidence 765 5777777 6665
No 292
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=93.74 E-value=0.46 Score=41.17 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=26.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMV 86 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV 86 (182)
.+|+|.|++|-.|+.+++.+.+.|.+|+
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~ 28 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVH 28 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEE
Confidence 3699999999999999999999999988
No 293
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=93.74 E-value=0.36 Score=43.99 Aligned_cols=35 Identities=26% Similarity=0.172 Sum_probs=27.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCC
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKK 94 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~ 94 (182)
++.||+|+|+ |..|..+++.+...| .+|. .||+..
T Consensus 41 ~~~~VlviG~-GGlGs~va~~La~~Gvg~i~--lvD~D~ 76 (392)
T PRK07878 41 KNARVLVIGA-GGLGSPTLLYLAAAGVGTLG--IVEFDV 76 (392)
T ss_pred hcCCEEEECC-CHHHHHHHHHHHHcCCCeEE--EECCCE
Confidence 4578999999 999999999999989 4444 556543
No 294
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=93.74 E-value=0.11 Score=47.35 Aligned_cols=87 Identities=16% Similarity=0.117 Sum_probs=63.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCCe----------------E---------ec--Ccccc--ccH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGGT----------------E---------HL--GLPVF--NSV 108 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G~----------------~---------i~--GvPVy--~Sv 108 (182)
+||.|-|| ||.|+.+.+.+.+. +++|| |--|+..... + ++ .++|+ +++
T Consensus 3 ~ki~INGf-GRIGR~~~r~~~~~~~~~vv-aINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~dp 80 (343)
T PRK07729 3 TKVAINGF-GRIGRMVFRKAIKESAFEIV-AINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRDP 80 (343)
T ss_pred eEEEEECc-ChHHHHHHHHHhhcCCcEEE-EecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCCh
Confidence 58999999 99999999987754 48999 6333211000 0 11 35565 246
Q ss_pred HHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeC
Q 030169 109 AEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 109 ~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iT 148 (182)
++++ .+.++|+++..+......+.+..++++|.+.|++ +
T Consensus 81 ~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~i-S 120 (343)
T PRK07729 81 KELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVIL-T 120 (343)
T ss_pred hhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEe-C
Confidence 6664 3358999999999999999999999999999887 5
No 295
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.69 E-value=0.11 Score=46.80 Aligned_cols=87 Identities=13% Similarity=0.106 Sum_probs=57.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC--Ce--EecCccccc-c------HHHH-HhccCCcEEEEeeCh
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG--GT--EHLGLPVFN-S------VAEA-KAETKANASVIYVPP 126 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~--G~--~i~GvPVy~-S------v~ea-~~~~~~DvaVdfVpp 126 (182)
|+|+|+|+ |++|+.+++.+.+.|.+++ .+++... .. +..+++++. + ++++ ++ ++|+++..++.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~--vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~--~a~~vi~~~~~ 75 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVT--VIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAE--DADLLIAVTDS 75 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEE--EEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCC--cCCEEEEecCC
Confidence 47999999 9999999999999898888 6654321 10 012444442 1 2332 22 78999999987
Q ss_pred HHHHH-HHHHHHHc-CCCEEEEeCCC
Q 030169 127 PFAAA-AIMEAMEA-ELDLVVCITEG 150 (182)
Q Consensus 127 ~av~~-a~~eAie~-GIk~VV~iTeG 150 (182)
..... ++..+.+. +.+.+|+-+..
T Consensus 76 ~~~n~~~~~~~r~~~~~~~ii~~~~~ 101 (453)
T PRK09496 76 DETNMVACQIAKSLFGAPTTIARVRN 101 (453)
T ss_pred hHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 65554 44555554 77777775544
No 296
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.69 E-value=0.14 Score=39.26 Aligned_cols=91 Identities=14% Similarity=0.202 Sum_probs=57.6
Q ss_pred EEEEccCCCCchhhhHHHHHhCCceEEeeccCCC---------------CCeEecCccccccHHHHHhccCCcEEEEeeC
Q 030169 61 VICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK---------------GGTEHLGLPVFNSVAEAKAETKANASVIYVP 125 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~---------------~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVp 125 (182)
|+|+|+ |.+|...+-.+.+.|.++. .+.... .|++....+.+..-. .....++|.++++|.
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~~V~--l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGHDVT--LVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAP-SADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTCEEE--EEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSH-GHHHSTESEEEE-SS
T ss_pred CEEECc-CHHHHHHHHHHHHCCCceE--EEEccccHHhhhheeEEEEecccceecccccccCcc-hhccCCCcEEEEEec
Confidence 689999 9999999998887776655 333222 011112222222222 112237999999999
Q ss_pred hHHHHHHHHHHHHcCCC--EEEEeCCCCCHHH
Q 030169 126 PPFAAAAIMEAMEAELD--LVVCITEGIPQHD 155 (182)
Q Consensus 126 p~av~~a~~eAie~GIk--~VV~iTeG~~~eD 155 (182)
.....+++......--+ .|+.+--|+..++
T Consensus 77 a~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~ 108 (151)
T PF02558_consen 77 AYQLEQALQSLKPYLDPNTTIVSLQNGMGNEE 108 (151)
T ss_dssp GGGHHHHHHHHCTGEETTEEEEEESSSSSHHH
T ss_pred ccchHHHHHHHhhccCCCcEEEEEeCCCCcHH
Confidence 99999998886555333 4676688988663
No 297
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.66 E-value=0.28 Score=39.54 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=54.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+++ .++..... .-...+++.+ ...+ .-+|...++.+.++++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi--~~~r~~~~-------~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~ 74 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLA--LIDLNQEK-------LEEAVAECGA-LGTEVRGYAANVTDEEDVEATFA 74 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEeCCHHH-------HHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHH
Confidence 45799999999999999999999998877 55544311 1111222211 1222 3566777888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
+..+. ++..||. ..|.
T Consensus 75 ~~~~~~~~id~vi~-~ag~ 92 (253)
T PRK08217 75 QIAEDFGQLNGLIN-NAGI 92 (253)
T ss_pred HHHHHcCCCCEEEE-CCCc
Confidence 77653 5788887 6564
No 298
>PRK06172 short chain dehydrogenase; Provisional
Probab=93.61 E-value=0.32 Score=39.75 Aligned_cols=83 Identities=17% Similarity=0.118 Sum_probs=54.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccC--Cc-EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--AN-ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~--~D-vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|..+++.+.+.|.+++ .++..... .. ...+.+++.. +. ...|...++.+.++++
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~~v~--~~~r~~~~--~~------~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 76 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGAKVV--VADRDAAG--GE------ETVALIREAGGEALFVACDVTRDAEVKALVE 76 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEE--EEeCCHHH--HH------HHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 45799999999999999999999998887 55544311 11 1111122111 21 3467777888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. .+..+|+ ..|+
T Consensus 77 ~~~~~~g~id~li~-~ag~ 94 (253)
T PRK06172 77 QTIAAYGRLDYAFN-NAGI 94 (253)
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 77665 5677777 5554
No 299
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=93.60 E-value=0.37 Score=40.14 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=28.1
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCC
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK 93 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~ 93 (182)
+|+|.|++|-.|+.+++.+.+.|.+|+ +++..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~--~~~r~ 33 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHDVR--GLDRL 33 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCeEE--EEeCC
Confidence 499999999999999999999898999 66543
No 300
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.57 E-value=0.11 Score=43.14 Aligned_cols=83 Identities=17% Similarity=0.196 Sum_probs=47.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC-eE---ecCccccccHHHHHhccCCcEEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG-TE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G-~~---i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~ 133 (182)
.++|+|+|+ |++|+.+++.+.+.|.+|+ +.|....- .+ ..+....++ +++.. .++|+.+-...... +.
T Consensus 28 gk~v~I~G~-G~vG~~~A~~L~~~G~~Vv--v~D~~~~~~~~~~~~~g~~~v~~-~~l~~-~~~Dv~vp~A~~~~---I~ 99 (200)
T cd01075 28 GKTVAVQGL-GKVGYKLAEHLLEEGAKLI--VADINEEAVARAAELFGATVVAP-EEIYS-VDADVFAPCALGGV---IN 99 (200)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE--EEcCCHHHHHHHHHHcCCEEEcc-hhhcc-ccCCEEEecccccc---cC
Confidence 367999999 9999999999999999999 44443210 00 113344433 44433 26777663322221 11
Q ss_pred HHHH-HcCCCEEEEeC
Q 030169 134 MEAM-EAELDLVVCIT 148 (182)
Q Consensus 134 ~eAi-e~GIk~VV~iT 148 (182)
++.+ +-+.+.|+.-+
T Consensus 100 ~~~~~~l~~~~v~~~A 115 (200)
T cd01075 100 DDTIPQLKAKAIAGAA 115 (200)
T ss_pred HHHHHHcCCCEEEECC
Confidence 2222 22567777633
No 301
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=93.57 E-value=0.45 Score=41.43 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=27.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMV 86 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV 86 (182)
.+||+|.|++|-.|+.+++.+.+.|.+|+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~V~ 38 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGYTVH 38 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence 56899999999999999999999999988
No 302
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=93.56 E-value=0.54 Score=38.45 Aligned_cols=84 Identities=15% Similarity=0.091 Sum_probs=54.6
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCcE-EEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KANA-SVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~Dv-aVdfVpp~av~~a~ 133 (182)
+.++++|.|++|..|+.+++.+.+.|.+|+ .++... . .. ..+.+-+++. +++. -.|...++.+.+++
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~--~~~r~~-~-~~------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGAHVL--VNGRNA-A-TL------EAAVAALRAAGGAAEALAFDIADEEAVAAAF 79 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCeEE--EEeCCH-H-HH------HHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 356799999999999999999999999888 555532 1 01 1111111111 2222 34677788888888
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. .+..+|. ..|.
T Consensus 80 ~~~~~~~~~id~vi~-~ag~ 98 (256)
T PRK06124 80 ARIDAEHGRLDILVN-NVGA 98 (256)
T ss_pred HHHHHhcCCCCEEEE-CCCC
Confidence 888764 4666776 5564
No 303
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=93.52 E-value=0.73 Score=37.40 Aligned_cols=81 Identities=16% Similarity=0.151 Sum_probs=54.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccC--C-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--A-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~--~-DvaVdfVpp~av~~a~~ 134 (182)
..+|+|.|++|..|+.+++.+.+.|.+++ .++.... +...+..++.+ + -+..|+..++.+.++++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~vi--~~~r~~~----------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGADIV--GAGRSEP----------SETQQQVEALGRRFLSLTADLSDIEAIKALVD 72 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEcCchH----------HHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 46799999999999999999999998888 5554321 11222222111 2 23457778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
+..+. ++..+|. ..|+
T Consensus 73 ~~~~~~~~~d~li~-~ag~ 90 (248)
T TIGR01832 73 SAVEEFGHIDILVN-NAGI 90 (248)
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 77664 4777777 5554
No 304
>PRK08703 short chain dehydrogenase; Provisional
Probab=93.51 E-value=0.26 Score=40.00 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=29.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK 94 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~ 94 (182)
.+++|.|++|..|+.+++.+.+.|.+++ .++++.
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~--~~~r~~ 40 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVI--LVARHQ 40 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEE--EEeCCh
Confidence 5799999999999999999999999887 566544
No 305
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.49 E-value=0.62 Score=37.77 Aligned_cols=80 Identities=15% Similarity=0.073 Sum_probs=51.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+++ ....... . ..+++.++. ++. ...|+..++...++++
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~~G~~vv-~~~~~~~-~----------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFAREGARVV-VNYHQSE-D----------AAEALADELGDRAIALQADVTDREQVQAMFA 72 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCeEE-EEcCCCH-H----------HHHHHHHHhCCceEEEEcCCCCHHHHHHHHH
Confidence 35799999999999999999999998888 3222211 1 111211111 222 2356778888888888
Q ss_pred HHHHc-C--CCEEEEeCCC
Q 030169 135 EAMEA-E--LDLVVCITEG 150 (182)
Q Consensus 135 eAie~-G--Ik~VV~iTeG 150 (182)
++.+. | +..+|. ..|
T Consensus 73 ~~~~~~g~~id~li~-~ag 90 (253)
T PRK08642 73 TATEHFGKPITTVVN-NAL 90 (253)
T ss_pred HHHHHhCCCCeEEEE-CCC
Confidence 77655 2 777776 444
No 306
>PRK12746 short chain dehydrogenase; Provisional
Probab=93.49 E-value=0.61 Score=38.01 Aligned_cols=85 Identities=14% Similarity=0.093 Sum_probs=52.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCCc-EEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~D-vaVdfVpp~av~~a~~e 135 (182)
..+++|.|++|..|+.+++.+.+.|.+++ ..+.+.... . -...++.... .++. +-.|...++...+++++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G~~v~-i~~~r~~~~--~-----~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~ 77 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDGALVA-IHYGRNKQA--A-----DETIREIESNGGKAFLIEADLNSIDGVKKLVEQ 77 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEcCCCHHH--H-----HHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHH
Confidence 35799999999999999999999998877 444443211 1 0111221110 0111 23466777777777776
Q ss_pred HHHc--------CCCEEEEeCCCC
Q 030169 136 AMEA--------ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--------GIk~VV~iTeG~ 151 (182)
..+. ++..++. +.|.
T Consensus 78 ~~~~~~~~~~~~~id~vi~-~ag~ 100 (254)
T PRK12746 78 LKNELQIRVGTSEIDILVN-NAGI 100 (254)
T ss_pred HHHHhccccCCCCccEEEE-CCCC
Confidence 6643 5777776 5554
No 307
>PLN02427 UDP-apiose/xylose synthase
Probab=93.47 E-value=0.47 Score=41.96 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=27.8
Q ss_pred CCceEEEEccCCCCchhhhHHHHHh-CCceEEeecc
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVT 91 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVd 91 (182)
+.+||+|.|++|-.|+.+++.+.+. |.+|+ +++
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~--~l~ 46 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVL--ALD 46 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCCEEE--EEe
Confidence 3478999999999999999999987 47888 444
No 308
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=93.45 E-value=0.091 Score=41.61 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=54.9
Q ss_pred EEEEccCCCCchhhhHHHHHhC--CceEEeeccCCCCCeE--------------e-----------------cCcccccc
Q 030169 61 VICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKGGTE--------------H-----------------LGLPVFNS 107 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~G~~--------------i-----------------~GvPVy~S 107 (182)
|+|.|+||..|+...+.+.++. ++|+ |... +..-+. + .++.+|.-
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~-~Lsa-~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G 78 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVV-ALSA-GSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSG 78 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEE-EEEE-SSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEES
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEE-EEEc-CCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeC
Confidence 5788999999999999888765 8888 5333 221111 0 03445544
Q ss_pred ---HHHHHhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 108 ---VAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 108 ---v~ea~~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
+.|+.+..++|+++..+.-.+.......|+++|.++..+
T Consensus 79 ~~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaLA 120 (129)
T PF02670_consen 79 PEGLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIALA 120 (129)
T ss_dssp HHHHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE-
T ss_pred hHHHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEEEe
Confidence 445444457888888888888888888888888776543
No 309
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=93.40 E-value=0.33 Score=41.98 Aligned_cols=83 Identities=20% Similarity=0.173 Sum_probs=54.5
Q ss_pred EEEccCCCCchhhhHHHHHhC--CceEEeeccCCCCC-eEe----------cCccccccHHHHHhccCCcEEEEe---eC
Q 030169 62 ICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKGG-TEH----------LGLPVFNSVAEAKAETKANASVIY---VP 125 (182)
Q Consensus 62 iVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~G-~~i----------~GvPVy~Sv~ea~~~~~~DvaVdf---Vp 125 (182)
+|.|++|-.|+.+++.+++.| .+|.+....+.... ... .++-=+++++++++ ++|+++-. ++
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~--g~d~V~H~Aa~~~ 78 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALE--GVDVVFHTAAPVP 78 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhc--CCceEEEeCcccc
Confidence 488999999999999999998 66661122222111 001 13333445777777 78877765 22
Q ss_pred h--------------HHHHHHHHHHHHcCCCEEEE
Q 030169 126 P--------------PFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 126 p--------------~av~~a~~eAie~GIk~VV~ 146 (182)
+ ..+..+++.|.++|++.+|.
T Consensus 79 ~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVy 113 (280)
T PF01073_consen 79 PWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVY 113 (280)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 2 24566888899999999876
No 310
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.39 E-value=0.28 Score=41.12 Aligned_cols=34 Identities=29% Similarity=0.288 Sum_probs=27.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKK 94 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~ 94 (182)
+.||+|+|+ |..|..+++.+...| .++. -+|+..
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~Gvg~i~--lvD~D~ 55 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAAGVGKLG--LVDDDV 55 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEE--EEcCCE
Confidence 468999999 999999999999999 4554 566554
No 311
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=93.36 E-value=0.46 Score=41.01 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=42.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC-C-----------eE----ecCccccccHHHHHhccCCcEEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG-G-----------TE----HLGLPVFNSVAEAKAETKANASVI 122 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~-G-----------~~----i~GvPVy~Sv~ea~~~~~~DvaVd 122 (182)
+||+|.|++|-.|+.+++.+.+.|.+.+ -+++.... + .. ..++-=..++.+++++..+|++|-
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSV-VNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH 79 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeE-EEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence 4799999999999999999998886644 35543210 0 00 112222234566666556898887
Q ss_pred eeC
Q 030169 123 YVP 125 (182)
Q Consensus 123 fVp 125 (182)
+..
T Consensus 80 ~A~ 82 (352)
T PRK10084 80 LAA 82 (352)
T ss_pred CCc
Confidence 764
No 312
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=93.34 E-value=0.65 Score=40.06 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=26.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMV 86 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV 86 (182)
.++|+|.|++|-.|+.+++.+.+.|.+|+
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~~V~ 34 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGYEVH 34 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEE
Confidence 46799999999999999999999998888
No 313
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=93.29 E-value=0.83 Score=37.66 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=52.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eA 136 (182)
+++++|.|++|..|..+++.+.+.|.+++ .++..... ..+ . ++ -...|...+..+.++++++
T Consensus 9 ~k~vlItG~s~gIG~~la~~l~~~G~~v~--~~~~~~~~--~~~-----------~--~~~~~~~D~~~~~~~~~~~~~~ 71 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVKELLANGANVV--NADIHGGD--GQH-----------E--NYQFVPTDVSSAEEVNHTVAEI 71 (266)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEE--EEeCCccc--ccc-----------C--ceEEEEccCCCHHHHHHHHHHH
Confidence 46799999999999999999999998888 44433211 110 0 11 2345677788888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. .+..+|. +.|+
T Consensus 72 ~~~~g~id~li~-~Ag~ 87 (266)
T PRK06171 72 IEKFGRIDGLVN-NAGI 87 (266)
T ss_pred HHHcCCCCEEEE-CCcc
Confidence 765 5677776 5554
No 314
>PRK07774 short chain dehydrogenase; Provisional
Probab=93.29 E-value=0.51 Score=38.29 Aligned_cols=83 Identities=23% Similarity=0.226 Sum_probs=53.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|.+|+.+++.+.+.|.+++ .++..... . ..+.+.+.+. ++ -+..|...+..+.++..
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi--~~~r~~~~--~------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVV--VADINAEG--A------ERVAKQIVADGGTAIAVQVDVSDPDSAKAMAD 75 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEeCCHHH--H------HHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 35799999999999999999999998888 55544311 1 1111211111 11 13456677777777777
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
+..+. ++..||. +.|+
T Consensus 76 ~~~~~~~~id~vi~-~ag~ 93 (250)
T PRK07774 76 ATVSAFGGIDYLVN-NAAI 93 (250)
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 76655 4777777 6665
No 315
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=93.28 E-value=0.35 Score=42.05 Aligned_cols=89 Identities=16% Similarity=0.081 Sum_probs=56.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCCCCe----------Ee----cCccccccHHHHHhccCCcEEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKGGT----------EH----LGLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~G~----------~i----~GvPVy~Sv~ea~~~~~~DvaV 121 (182)
.++|+|.|++|-.|+.+++.+.+.| .+|+ .++...... .+ .++-=..++.++++ ++|+++
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~--~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~--~iD~Vi 79 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKII--IYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALR--GVDYVV 79 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEE--EEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHh--cCCEEE
Confidence 4679999999999999999998765 5676 333221110 00 12222233555555 689888
Q ss_pred EeeCh------------------HHHHHHHHHHHHcCCCEEEEeCCC
Q 030169 122 IYVPP------------------PFAAAAIMEAMEAELDLVVCITEG 150 (182)
Q Consensus 122 dfVpp------------------~av~~a~~eAie~GIk~VV~iTeG 150 (182)
-+.-. ..+..+++.|.+.|++.+|.+++.
T Consensus 80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~ 126 (324)
T TIGR03589 80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTD 126 (324)
T ss_pred ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 75421 134567777888899888776653
No 316
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=93.26 E-value=0.27 Score=45.60 Aligned_cols=86 Identities=14% Similarity=0.113 Sum_probs=56.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHh--CCceEEeeccCCCCCeE--------------ec---------------C--cccc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVTPKKGGTE--------------HL---------------G--LPVF 105 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVdp~~~G~~--------------i~---------------G--vPVy 105 (182)
.||+|.|.||..|+...+.+.++ .++|+ |. .-+..-+. +. + ..||
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~-~L-aa~~n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v~ 79 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVV-AL-SAGKNVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEVL 79 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEE-EE-EcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEEE
Confidence 47999999999999999877754 38888 53 22221110 00 1 3344
Q ss_pred cc---HHHHHhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 106 NS---VAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 106 ~S---v~ea~~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
.. +.++.+..++|+++..+.-.+......+|+++|.++..+
T Consensus 80 ~G~~~l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLA 123 (389)
T TIGR00243 80 VGEEGICEMAALEDVDQVMNAIVGAAGLLPTLAAIRAGKTIALA 123 (389)
T ss_pred ECHHHHHHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEe
Confidence 44 333333346788888888888888888888888776544
No 317
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=93.25 E-value=0.73 Score=37.75 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=54.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccC--Cc-EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--AN-ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~--~D-vaVdfVpp~av~~a~~ 134 (182)
..+|+|.|++|..|+.+++.+.+.|.+|+ .++..... . ....+.+++.+ ++ ...|...++.+.++++
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~--~~~r~~~~--~------~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~ 79 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAEVI--LNGRDPAK--L------AAAAESLKGQGLSAHALAFDVTDHDAVRAAID 79 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCEEE--EEeCCHHH--H------HHHHHHHHhcCceEEEEEccCCCHHHHHHHHH
Confidence 46799999999999999999999999988 45543211 1 11111122111 21 2347788888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. .+..+|. ..|.
T Consensus 80 ~~~~~~~~~d~li~-~ag~ 97 (255)
T PRK07523 80 AFEAEIGPIDILVN-NAGM 97 (255)
T ss_pred HHHHhcCCCCEEEE-CCCC
Confidence 87765 4666766 5554
No 318
>PRK06194 hypothetical protein; Provisional
Probab=93.23 E-value=0.37 Score=40.24 Aligned_cols=83 Identities=18% Similarity=0.172 Sum_probs=53.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|-.|+.+++.+.+.|.+++ .++..... .. ...+++.. ...+ +..|...++.+.++++
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~~V~--~~~r~~~~--~~-----~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~ 75 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGMKLV--LADVQQDA--LD-----RAVAELRA-QGAEVLGVRTDVSDAAQVEALAD 75 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEE--EEeCChHH--HH-----HHHHHHHh-cCCeEEEEECCCCCHHHHHHHHH
Confidence 35799999999999999999999998887 44432211 00 11222221 1223 3456777888888887
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..|+. ..|+
T Consensus 76 ~~~~~~g~id~vi~-~Ag~ 93 (287)
T PRK06194 76 AALERFGAVHLLFN-NAGV 93 (287)
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 77655 5788877 5554
No 319
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=93.20 E-value=0.97 Score=41.32 Aligned_cols=86 Identities=15% Similarity=0.166 Sum_probs=55.5
Q ss_pred chhhhHHHHHhCCceEEeeccCCCC--Ce------EecCccccccHHHHHhccCCcEEEEeeChHHH-HHHHHHHHHcCC
Q 030169 71 GTFHTEQAIEYGTKMVVGGVTPKKG--GT------EHLGLPVFNSVAEAKAETKANASVIYVPPPFA-AAAIMEAMEAEL 141 (182)
Q Consensus 71 G~~v~k~~~~~g~~IV~AgVdp~~~--G~------~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av-~~a~~eAie~GI 141 (182)
|+.++..+.+.|.+++ +.|+... .. ...|..+.+|..|+.+ ++|+++.++|-... .+++...+++-.
T Consensus 32 GspMArnLlkAGheV~--V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa--~ADVVIL~LPd~aaV~eVl~GLaa~L~ 107 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVV--LAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK--HGEIHVLFTPFGKGTFSIARTIIEHVP 107 (341)
T ss_pred HHHHHHHHHHCCCEEE--EEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh--CCCEEEEecCCHHHHHHHHHHHHhcCC
Confidence 4566778888898888 5554432 11 1248899999999998 79999999998874 466554444311
Q ss_pred --CEEEEeCCCCCHHHHHHHHH
Q 030169 142 --DLVVCITEGIPQHDMVINFT 161 (182)
Q Consensus 142 --k~VV~iTeG~~~eD~~~l~~ 161 (182)
+.||- ++=++.+..-++.+
T Consensus 108 ~GaIVID-~STIsP~t~~~~~e 128 (341)
T TIGR01724 108 ENAVICN-TCTVSPVVLYYSLE 128 (341)
T ss_pred CCCEEEE-CCCCCHHHHHHHHH
Confidence 23444 55555555555444
No 320
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=93.17 E-value=0.67 Score=40.05 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=42.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC-Ce-------------E--ecCccccccHHHHHhccCCcEEEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG-GT-------------E--HLGLPVFNSVAEAKAETKANASVI 122 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~-G~-------------~--i~GvPVy~Sv~ea~~~~~~DvaVd 122 (182)
+||+|.|++|-.|+.+++.+.+.|.+++ ..++.... +. + ..++.-..++++++++.++|.+|-
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih 80 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAV-VVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMH 80 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEE-EEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence 4799999999999999999999887655 44443210 00 0 012222234566666556898887
Q ss_pred ee
Q 030169 123 YV 124 (182)
Q Consensus 123 fV 124 (182)
+.
T Consensus 81 ~A 82 (355)
T PRK10217 81 LA 82 (355)
T ss_pred CC
Confidence 75
No 321
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.17 E-value=0.34 Score=43.50 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=28.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKK 94 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~ 94 (182)
..||+|+|+ |..|+.+++.+...|. +|. -||...
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGvg~i~--lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGVGKVT--IVDRDY 58 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCeEE--EEeCCc
Confidence 477999999 9999999999999994 555 677653
No 322
>PRK06198 short chain dehydrogenase; Provisional
Probab=93.13 E-value=0.64 Score=38.03 Aligned_cols=84 Identities=19% Similarity=0.115 Sum_probs=55.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCc-eEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTK-MVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~-IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~ 133 (182)
+.+++|.|++|..|+.+++.+.+.|.+ |+ .++..... . + ...+++ .+...+ +.+|+..++.+.+++
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~~~V~--~~~r~~~~--~---~--~~~~~l-~~~~~~~~~~~~D~~~~~~~~~~~ 75 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGAAGLV--ICGRNAEK--G---E--AQAAEL-EALGAKAVFVQADLSDVEDCRRVV 75 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCCeEE--EEcCCHHH--H---H--HHHHHH-HhcCCeEEEEEccCCCHHHHHHHH
Confidence 467999999999999999999999987 66 55543211 1 1 112222 211222 346788888888888
Q ss_pred HHHHHc--CCCEEEEeCCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGIP 152 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~~ 152 (182)
+.+.+. ++..++. ..|..
T Consensus 76 ~~~~~~~g~id~li~-~ag~~ 95 (260)
T PRK06198 76 AAADEAFGRLDALVN-AAGLT 95 (260)
T ss_pred HHHHHHhCCCCEEEE-CCCcC
Confidence 777654 6778877 66653
No 323
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=93.12 E-value=0.74 Score=40.60 Aligned_cols=106 Identities=15% Similarity=0.052 Sum_probs=69.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCe---Ee-----cCccccccHHHHHhccCCcEEEEeeChHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGT---EH-----LGLPVFNSVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~---~i-----~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
.++|+|.|.| ..++.+++.+..++ ..++ .-... .+++ +. .|.==..-+.+.+++.++|++||.++|-+
T Consensus 2 ~~~ilvlGGT-~Dar~la~~L~~~~~~~~~-ss~t~-~g~~l~~~~~~~~~~G~l~~e~l~~~l~e~~i~llIDATHPyA 78 (257)
T COG2099 2 MMRILLLGGT-SDARALAKKLAAAPVDIIL-SSLTG-YGAKLAEQIGPVRVGGFLGAEGLAAFLREEGIDLLIDATHPYA 78 (257)
T ss_pred CceEEEEecc-HHHHHHHHHhhccCccEEE-EEccc-ccccchhccCCeeecCcCCHHHHHHHHHHcCCCEEEECCChHH
Confidence 5789999974 47888899888876 3333 21111 1111 11 12111222777788889999999999988
Q ss_pred HH---HHHHHHHHcCCCEEEEeCCC--------CCHHHHHHHHHHhccc
Q 030169 129 AA---AAIMEAMEAELDLVVCITEG--------IPQHDMVINFTRVNIL 166 (182)
Q Consensus 129 v~---~a~~eAie~GIk~VV~iTeG--------~~~eD~~~l~~~ak~i 166 (182)
+. .+++-|-+.||+.+.--=.+ +.++|+.+..+++++.
T Consensus 79 a~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~ 127 (257)
T COG2099 79 ARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQL 127 (257)
T ss_pred HHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhcc
Confidence 76 77788889999997432222 3457778888877765
No 324
>PLN02650 dihydroflavonol-4-reductase
Probab=93.10 E-value=0.45 Score=41.32 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=26.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMV 86 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV 86 (182)
.++|+|.|++|-.|+.+++.+.+.|.+|+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~V~ 33 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYTVR 33 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCEEE
Confidence 45799999999999999999999998888
No 325
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=93.09 E-value=0.11 Score=47.25 Aligned_cols=86 Identities=12% Similarity=0.030 Sum_probs=62.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHh---CCceEEeeccCCCCCe----------------E---------ec--Ccccccc-
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVVGGVTPKKGGT----------------E---------HL--GLPVFNS- 107 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~---g~~IV~AgVdp~~~G~----------------~---------i~--GvPVy~S- 107 (182)
.||.|-|| ||.|+.+.+.+.+. +++|| |--|+..... + ++ .++|+..
T Consensus 2 ~ki~INGf-GRIGR~~~R~~~~~~~~~~~vv-aind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~ 79 (337)
T PRK07403 2 IRVAINGF-GRIGRNFLRCWLGRENSQLELV-AINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDR 79 (337)
T ss_pred eEEEEEcc-ChHHHHHHHHHHhccCCCeEEE-EecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcC
Confidence 58999999 99999999987654 58899 6444321100 0 11 3556652
Q ss_pred -HHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 108 -VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 108 -v~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
+++++ .+.++|+++..+......+-+..++++|.+.|++
T Consensus 80 dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~i 120 (337)
T PRK07403 80 NPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLI 120 (337)
T ss_pred CcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEe
Confidence 35554 3458999999999999999999999999999887
No 326
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=93.09 E-value=0.91 Score=38.78 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=28.8
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeec
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGV 90 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgV 90 (182)
...+|+|.|++|-.|+.+++.+.+.|.+|+ +.+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~-~~~ 36 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVK-ATV 36 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEE
Confidence 456899999999999999999999998888 544
No 327
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=93.07 E-value=0.27 Score=41.62 Aligned_cols=85 Identities=16% Similarity=0.170 Sum_probs=51.2
Q ss_pred EEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe---cCccc--cccHHHHHhc-------cCCcEEEEee----
Q 030169 61 VICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH---LGLPV--FNSVAEAKAE-------TKANASVIYV---- 124 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i---~GvPV--y~Sv~ea~~~-------~~~DvaVdfV---- 124 (182)
|+|.|++|-.|+.+++.+.+.|.+++ +.++....+... ..+.+ +.+.++..++ .++|+++-+.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A~~~~ 80 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDI-LVVDNLKDGTKFVNLVDLDIADYMDKEDFLAQIMAGDDFGDIEAIFHEGACSS 80 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceE-EEecCCCcchHHHhhhhhhhhhhhhHHHHHHHHhcccccCCccEEEECceecC
Confidence 78999999999999999999897777 566554322111 11111 1122222221 1689887752
Q ss_pred C------------hHHHHHHHHHHHHcCCCEEEE
Q 030169 125 P------------PPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 125 p------------p~av~~a~~eAie~GIk~VV~ 146 (182)
+ -..+..+++.|.+++++.|..
T Consensus 81 ~~~~~~~~~~~~n~~~t~~ll~~~~~~~~~~i~~ 114 (308)
T PRK11150 81 TTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYA 114 (308)
T ss_pred CcCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 1 112345777888889975544
No 328
>PRK05872 short chain dehydrogenase; Provisional
Probab=93.06 E-value=0.38 Score=41.07 Aligned_cols=80 Identities=24% Similarity=0.227 Sum_probs=55.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCcE---EEEeeChHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KANA---SVIYVPPPFAAAA 132 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~Dv---aVdfVpp~av~~a 132 (182)
..+++|.|++|..|..+++.+.+.|.+++ .++.... .++++.++. ..++ ..|...++.+.++
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~~V~--~~~r~~~-----------~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~ 75 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGAKLA--LVDLEEA-----------ELAALAAELGGDDRVLTVVADVTDLAAMQAA 75 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHHHhcCCCcEEEEEecCCCHHHHHHH
Confidence 35699999999999999999999998887 4443221 122221111 2223 2688899999999
Q ss_pred HHHHHHc--CCCEEEEeCCCC
Q 030169 133 IMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 133 ~~eAie~--GIk~VV~iTeG~ 151 (182)
+++..+. .+..+|+ ..|+
T Consensus 76 ~~~~~~~~g~id~vI~-nAG~ 95 (296)
T PRK05872 76 AEEAVERFGGIDVVVA-NAGI 95 (296)
T ss_pred HHHHHHHcCCCCEEEE-CCCc
Confidence 8888764 5788887 7665
No 329
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=93.05 E-value=0.94 Score=37.07 Aligned_cols=83 Identities=18% Similarity=0.199 Sum_probs=54.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+++ .++..... .. ...+++.+. ..+ ...|...++.+.+++.
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~~vv--l~~r~~~~--~~-----~~~~~l~~~-~~~~~~~~~Dl~~~~~~~~~~~ 78 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGAEII--INDITAER--AE-----LAVAKLRQE-GIKAHAAPFNVTHKQEVEAAIE 78 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCEEE--EEcCCHHH--HH-----HHHHHHHhc-CCeEEEEecCCCCHHHHHHHHH
Confidence 45699999999999999999999998888 33332210 00 011222111 112 2356778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|. ..|.
T Consensus 79 ~~~~~~~~id~vi~-~ag~ 96 (254)
T PRK08085 79 HIEKDIGPIDVLIN-NAGI 96 (254)
T ss_pred HHHHhcCCCCEEEE-CCCc
Confidence 88765 5777877 6664
No 330
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=93.04 E-value=0.17 Score=45.89 Aligned_cols=105 Identities=21% Similarity=0.228 Sum_probs=69.8
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-EecCccccccHHHHHhccCCcEEEEeeChHH-HHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM 134 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~a-v~~a~~ 134 (182)
..++|-.+|. |.||+..++.++..|.++.|=.++..+--. +..|--|++|..|+.+ ..|+++..+|-+. |.++..
T Consensus 34 s~~~iGFIGL-G~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae--~sDvvitmv~~~~~v~~v~~ 110 (327)
T KOG0409|consen 34 SKTRIGFIGL-GNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAE--DSDVVITMVPNPKDVKDVLL 110 (327)
T ss_pred ccceeeEEee-ccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHh--hcCEEEEEcCChHhhHHHhc
Confidence 4688999998 999999999999999888822344433210 1248999999999999 8999988887554 444433
Q ss_pred H------HHHcCCCEEEEeCCCCCHHHHHHHHHHhcc
Q 030169 135 E------AMEAELDLVVCITEGIPQHDMVINFTRVNI 165 (182)
Q Consensus 135 e------Aie~GIk~VV~iTeG~~~eD~~~l~~~ak~ 165 (182)
. .+..|-+..|= .+=+.+.-..+|.+.++.
T Consensus 111 g~~Gvl~g~~~g~~~~vD-mSTidp~~s~ei~~~i~~ 146 (327)
T KOG0409|consen 111 GKSGVLSGIRPGKKATVD-MSTIDPDTSLEIAKAISN 146 (327)
T ss_pred CCCcceeeccCCCceEEe-ccccCHHHHHHHHHHHHh
Confidence 2 11122222222 344666666777666543
No 331
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.03 E-value=0.21 Score=45.88 Aligned_cols=81 Identities=16% Similarity=0.223 Sum_probs=51.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe--------EecCcccccc--HHHHHhccCCcEEEEeeCh-
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT--------EHLGLPVFNS--VAEAKAETKANASVIYVPP- 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~--------~i~GvPVy~S--v~ea~~~~~~DvaVdfVpp- 126 (182)
..||.|+|. |+.|..+++.+.+.|.++. +.|.+.... +-.|+.++.. ..+.++ ++|++|.. |.
T Consensus 14 ~~~i~v~G~-G~sG~a~a~~L~~~G~~V~--~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~--~~dlVV~S-pgi 87 (458)
T PRK01710 14 NKKVAVVGI-GVSNIPLIKFLVKLGAKVT--AFDKKSEEELGEVSNELKELGVKLVLGENYLDKLD--GFDVIFKT-PSM 87 (458)
T ss_pred CCeEEEEcc-cHHHHHHHHHHHHCCCEEE--EECCCCCccchHHHHHHHhCCCEEEeCCCChHHhc--cCCEEEEC-CCC
Confidence 368999999 9999999999999998877 666543211 0125655422 223344 57865543 31
Q ss_pred HHHHHHHHHHHHcCCCEE
Q 030169 127 PFAAAAIMEAMEAELDLV 144 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~V 144 (182)
......+..|.+.||+.+
T Consensus 88 ~~~~p~~~~a~~~~i~i~ 105 (458)
T PRK01710 88 RIDSPELVKAKEEGAYIT 105 (458)
T ss_pred CCCchHHHHHHHcCCcEE
Confidence 222356677777787753
No 332
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.02 E-value=1.3 Score=36.43 Aligned_cols=80 Identities=15% Similarity=0.073 Sum_probs=54.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eA 136 (182)
.++++|.|++|..|+.+++.+.+.|.+++ .. ..... +..+++.+. ++ -+..|...++.+.++++++
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~~v~-~~-~~~~~----------~~~~~l~~~-~~~~~~~Dl~~~~~~~~~~~~~ 73 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGAKVA-VL-YNSAE----------NEAKELREK-GVFTIKCDVGNRDQVKKSKEVV 73 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEE-EE-eCCcH----------HHHHHHHhC-CCeEEEecCCCHHHHHHHHHHH
Confidence 46799999999999999999999998887 32 22110 011222211 22 2456788899999998888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|. ..|+
T Consensus 74 ~~~~~~id~li~-~ag~ 89 (255)
T PRK06463 74 EKEFGRVDVLVN-NAGI 89 (255)
T ss_pred HHHcCCCCEEEE-CCCc
Confidence 775 5777776 5554
No 333
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=93.02 E-value=0.55 Score=40.75 Aligned_cols=84 Identities=15% Similarity=0.238 Sum_probs=51.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-CCceEEeeccCCCCC-eE---ecCccccc-c-------HHHHHhccCCcEEEEe--
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTPKKGG-TE---HLGLPVFN-S-------VAEAKAETKANASVIY-- 123 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp~~~G-~~---i~GvPVy~-S-------v~ea~~~~~~DvaVdf-- 123 (182)
++|+|.|++|-.|+.+++.+++. |.+|+ +++..... .. ..++.++. + +.++.+ ++|+++-+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~--~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~~d~ViH~aa 77 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVY--GMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVK--KCDVILPLVA 77 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEE--EEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHc--CCCEEEECcc
Confidence 57999999999999999999876 57888 55532210 00 11233322 2 223334 78998854
Q ss_pred --eChH--------------HHHHHHHHHHHcCCCEEEE
Q 030169 124 --VPPP--------------FAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 124 --Vpp~--------------av~~a~~eAie~GIk~VV~ 146 (182)
.|+. .+..+++.|.+.+.+.|.+
T Consensus 78 ~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~ 116 (347)
T PRK11908 78 IATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFP 116 (347)
T ss_pred cCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 3321 2345677777788555544
No 334
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.02 E-value=0.16 Score=40.71 Aligned_cols=78 Identities=17% Similarity=0.104 Sum_probs=52.2
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCcccc----ccHHHH-HhccCCcEEEEeeChHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVF----NSVAEA-KAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy----~Sv~ea-~~~~~~DvaVdfVpp~av~~ 131 (182)
...+|+|+|+ |+.|...++.++++|.+|+ -|+|.... ++..++.. ..+++. ++ +.|+++..+.-..+..
T Consensus 12 ~~~~vlVvGG-G~va~rka~~Ll~~ga~V~--VIsp~~~~-~l~~l~~i~~~~~~~~~~dl~--~a~lViaaT~d~e~N~ 85 (157)
T PRK06719 12 HNKVVVIIGG-GKIAYRKASGLKDTGAFVT--VVSPEICK-EMKELPYITWKQKTFSNDDIK--DAHLIYAATNQHAVNM 85 (157)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEE--EEcCccCH-HHHhccCcEEEecccChhcCC--CceEEEECCCCHHHHH
Confidence 4578999999 9999999999999998887 66776533 22222211 112221 22 6788888888877776
Q ss_pred HHHHHHHcC
Q 030169 132 AIMEAMEAE 140 (182)
Q Consensus 132 a~~eAie~G 140 (182)
.+.++.+.+
T Consensus 86 ~i~~~a~~~ 94 (157)
T PRK06719 86 MVKQAAHDF 94 (157)
T ss_pred HHHHHHHHC
Confidence 665555544
No 335
>PRK07109 short chain dehydrogenase; Provisional
Probab=93.01 E-value=0.61 Score=40.91 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=55.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
...|+|.|++|..|+.+++.+.+.|.+|+ .++..... . ..+.+-+++...+ +..|...++.+.++++
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~~Vv--l~~R~~~~--l------~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~ 77 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGAKVV--LLARGEEG--L------EALAAEIRAAGGEALAVVADVADAEAVQAAAD 77 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEE--EEECCHHH--H------HHHHHHHHHcCCcEEEEEecCCCHHHHHHHHH
Confidence 35699999999999999999999998888 44443211 0 1111111211222 3468888999999988
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 78 ~~~~~~g~iD~lIn-nAg~ 95 (334)
T PRK07109 78 RAEEELGPIDTWVN-NAMV 95 (334)
T ss_pred HHHHHCCCCCEEEE-CCCc
Confidence 88765 5787877 6664
No 336
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=92.99 E-value=0.13 Score=47.95 Aligned_cols=86 Identities=16% Similarity=0.061 Sum_probs=62.4
Q ss_pred ceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCCCCeE-------------------e--------c--Cccccc--
Q 030169 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKKGGTE-------------------H--------L--GLPVFN-- 106 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~~G~~-------------------i--------~--GvPVy~-- 106 (182)
.||.|.|| |+.|+.+.+.+.+ .+++|| +--||....+. + + .+.|+.
T Consensus 86 ~kvgInGF-GRIGR~v~R~~~~~~~i~vv-aINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 86 TKIGINGF-GRIGRLVLRIATSRDDIEVV-AVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR 163 (421)
T ss_pred eEEEEECc-CHHHHHHHHHHhhcCCcEEE-EecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence 49999999 9999999998875 679999 75555432211 0 1 244442
Q ss_pred cHHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 107 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 107 Sv~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
++++.. ++.++|+++..+......+.+...+++|.+.||+
T Consensus 164 dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVI 204 (421)
T PLN02272 164 DPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVI 204 (421)
T ss_pred CcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEE
Confidence 344443 3347999999999888888899999999988877
No 337
>PRK07060 short chain dehydrogenase; Provisional
Probab=92.99 E-value=1.1 Score=36.19 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=49.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
..+++|.|++|..|+.+++.+.+.|.+|+ .++.... ..++..+..+++ +..|+..++.+.++.++
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~~V~--~~~r~~~-----------~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~- 74 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGARVV--AAARNAA-----------ALDRLAGETGCEPLRLDVGDDAAIRAALAA- 74 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHHHhCCeEEEecCCCHHHHHHHHHH-
Confidence 35799999999999999999999998888 5554321 122222221222 33567777665555544
Q ss_pred HHcCCCEEEEeCCCC
Q 030169 137 MEAELDLVVCITEGI 151 (182)
Q Consensus 137 ie~GIk~VV~iTeG~ 151 (182)
..++..||. ..|.
T Consensus 75 -~~~~d~vi~-~ag~ 87 (245)
T PRK07060 75 -AGAFDGLVN-CAGI 87 (245)
T ss_pred -hCCCCEEEE-CCCC
Confidence 235777777 5554
No 338
>PRK05867 short chain dehydrogenase; Provisional
Probab=92.98 E-value=0.82 Score=37.49 Aligned_cols=83 Identities=14% Similarity=0.209 Sum_probs=54.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|..+++.+.+.|.+|+ .++..... . ..+.+-+++. ++ -+..|+..++.+.++++
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~--~------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGAQVA--IAARHLDA--L------EKLADEIGTSGGKVVPVCCDVSQHQQVTSMLD 78 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEcCCHHH--H------HHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 45699999999999999999999999988 34332211 1 1111111111 11 23467788888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 79 ~~~~~~g~id~lv~-~ag~ 96 (253)
T PRK05867 79 QVTAELGGIDIAVC-NAGI 96 (253)
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 87765 6787777 5554
No 339
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.96 E-value=0.52 Score=38.21 Aligned_cols=32 Identities=19% Similarity=0.080 Sum_probs=25.6
Q ss_pred eEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCC
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKK 94 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~ 94 (182)
||+|+|+ |-+|..+++.+...|. ++. -+|+..
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg~i~--lvD~D~ 33 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVGNLK--LVDFDV 33 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCeEE--EEeCCE
Confidence 5899999 9999999999998884 355 555544
No 340
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=92.96 E-value=0.35 Score=43.40 Aligned_cols=105 Identities=15% Similarity=0.110 Sum_probs=68.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC--eEecCccccccHHHHHhccCCcEEEEeeChHHHH-HHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG--TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAA-AAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G--~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~-~a~~ 134 (182)
.+++.|+|. |+.|+.+++.+..+|++|+ .-++.... .+..+..-++ ++|+.+ +.|++++..|...-- .++.
T Consensus 146 gktvGIiG~-GrIG~avA~r~~~Fgm~v~--y~~~~~~~~~~~~~~~~y~~-l~ell~--~sDii~l~~Plt~~T~hLin 219 (324)
T COG1052 146 GKTLGIIGL-GRIGQAVARRLKGFGMKVL--YYDRSPNPEAEKELGARYVD-LDELLA--ESDIISLHCPLTPETRHLIN 219 (324)
T ss_pred CCEEEEECC-CHHHHHHHHHHhcCCCEEE--EECCCCChHHHhhcCceecc-HHHHHH--hCCEEEEeCCCChHHhhhcC
Confidence 567999998 9999999999999999998 66665421 1122344444 999999 899999999976544 3333
Q ss_pred HHHHcCCC--E-EEEeCCCCCHHHHHHHHHHhcccchh
Q 030169 135 EAMEAELD--L-VVCITEGIPQHDMVINFTRVNILLVA 169 (182)
Q Consensus 135 eAie~GIk--~-VV~iTeG~~~eD~~~l~~~ak~ipv~ 169 (182)
+..=+.+| . +|+ |.-=+.-|...|.++-++--|+
T Consensus 220 ~~~l~~mk~ga~lVN-taRG~~VDe~ALi~AL~~g~i~ 256 (324)
T COG1052 220 AEELAKMKPGAILVN-TARGGLVDEQALIDALKSGKIA 256 (324)
T ss_pred HHHHHhCCCCeEEEE-CCCccccCHHHHHHHHHhCCcc
Confidence 33322333 2 566 4444555555555555544443
No 341
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=92.93 E-value=0.18 Score=42.80 Aligned_cols=32 Identities=31% Similarity=0.396 Sum_probs=28.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeecc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVT 91 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVd 91 (182)
..||+|+|+ |+.|+.+++.+.+.|.+|+ +-.|
T Consensus 31 ~~~v~I~G~-G~VG~~~a~~L~~~g~~vv-~v~D 62 (227)
T cd01076 31 GARVAIQGF-GNVGSHAARFLHEAGAKVV-AVSD 62 (227)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEEC
Confidence 588999998 9999999999999999999 5444
No 342
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=92.89 E-value=0.29 Score=46.40 Aligned_cols=88 Identities=18% Similarity=0.207 Sum_probs=57.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-EecCccccccHHHHHhccCCcEEEEeeChHHHHHHH-HH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI-ME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~-~e 135 (182)
..+|+|+|+ |+.|+.+++.+..+|.+|++...+|.+.-+ ...|+.+ .+++++.+ .+|+++..+.. ..++ .+
T Consensus 254 GKtVgVIG~-G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~--~ADIVI~atGt---~~iI~~e 326 (476)
T PTZ00075 254 GKTVVVCGY-GDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVE--TADIFVTATGN---KDIITLE 326 (476)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHh--cCCEEEECCCc---ccccCHH
Confidence 457999998 999999999999999998734557655311 1135543 36888887 79999988643 3333 35
Q ss_pred HHHc-CCCEEEEeCCCCC
Q 030169 136 AMEA-ELDLVVCITEGIP 152 (182)
Q Consensus 136 Aie~-GIk~VV~iTeG~~ 152 (182)
.++. +-..+++-+..+.
T Consensus 327 ~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 327 HMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred HHhccCCCcEEEEcCCCc
Confidence 5544 3333433244443
No 343
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=92.86 E-value=0.67 Score=41.05 Aligned_cols=37 Identities=24% Similarity=0.236 Sum_probs=29.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG 96 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G 96 (182)
+.+|+|+|+ |-.|.++++++...|.+=+ .-+|+....
T Consensus 19 ~s~VLIvG~-gGLG~EiaKnLalaGVg~i-tI~D~d~ve 55 (286)
T cd01491 19 KSNVLISGL-GGLGVEIAKNLILAGVKSV-TLHDTKPCS 55 (286)
T ss_pred cCcEEEEcC-CHHHHHHHHHHHHcCCCeE-EEEcCCccc
Confidence 578999999 8999999999999995433 366776544
No 344
>PRK08017 oxidoreductase; Provisional
Probab=92.83 E-value=1.3 Score=36.04 Aligned_cols=77 Identities=16% Similarity=0.110 Sum_probs=48.1
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 138 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eAie 138 (182)
+|+|.|++|..|+.+++.+.+.|.+++ .++..... ++++.+ .+++ +..|...++...+.++.+.+
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~--~~~r~~~~-----------~~~~~~-~~~~~~~~D~~~~~~~~~~~~~i~~ 69 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVL--AACRKPDD-----------VARMNS-LGFTGILLDLDDPESVERAADEVIA 69 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEE--EEeCCHHH-----------hHHHHh-CCCeEEEeecCCHHHHHHHHHHHHH
Confidence 599999999999999999999898887 33332211 112111 1222 33466677777777666654
Q ss_pred ---cCCCEEEEeCCCC
Q 030169 139 ---AELDLVVCITEGI 151 (182)
Q Consensus 139 ---~GIk~VV~iTeG~ 151 (182)
.++..++. ..|+
T Consensus 70 ~~~~~~~~ii~-~ag~ 84 (256)
T PRK08017 70 LTDNRLYGLFN-NAGF 84 (256)
T ss_pred hcCCCCeEEEE-CCCC
Confidence 24555555 5554
No 345
>PRK05650 short chain dehydrogenase; Provisional
Probab=92.79 E-value=0.65 Score=38.58 Aligned_cols=81 Identities=14% Similarity=0.118 Sum_probs=50.8
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~eA 136 (182)
+|+|.|++|..|+.+++.+.+.|.+++ .++..... .. ...+++.. .+.+ +..|+..++.+.+++++.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~--~~~r~~~~--~~-----~~~~~l~~-~~~~~~~~~~D~~~~~~~~~~~~~i 71 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLA--LADVNEEG--GE-----ETLKLLRE-AGGDGFYQRCDVRDYSQLTALAQAC 71 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHHHHh-cCCceEEEEccCCCHHHHHHHHHHH
Confidence 689999999999999999999998887 33332211 00 00111111 1112 345677777777777666
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|. ..|+
T Consensus 72 ~~~~~~id~lI~-~ag~ 87 (270)
T PRK05650 72 EEKWGGIDVIVN-NAGV 87 (270)
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 554 5777777 6554
No 346
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=92.78 E-value=0.23 Score=45.00 Aligned_cols=83 Identities=8% Similarity=-0.148 Sum_probs=59.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCc---eEEeeccC-CCCCeEe----cCccccccHHHHHhccCCcEEEEeeChHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTK---MVVGGVTP-KKGGTEH----LGLPVFNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~---IV~AgVdp-~~~G~~i----~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
.+|+| |+||--|+.+.+.+.+.++. +. ---.+ ...|+.+ ..++|-.--++..+ ++|+++. .+.+...
T Consensus 4 ~~iAi-GATg~VG~~~l~~Leer~fpv~~l~-l~~s~~~s~gk~i~f~g~~~~V~~l~~~~f~--~vDia~f-ag~~~s~ 78 (322)
T PRK06901 4 LNIAI-AAEFELSEKLLEALEQSDLEIEQIS-IVEIEPFGEEQGIRFNNKAVEQIAPEEVEWA--DFNYVFF-AGKMAQA 78 (322)
T ss_pred ceEEE-ecCcHHHHHHHHHHHhcCCchhhee-ecccccccCCCEEEECCEEEEEEECCccCcc--cCCEEEE-cCHHHHH
Confidence 57999 99999999999999988843 22 11222 4445443 14555544444444 7999998 9999999
Q ss_pred HHHHHHHHcCCCEEEE
Q 030169 131 AAIMEAMEAELDLVVC 146 (182)
Q Consensus 131 ~a~~eAie~GIk~VV~ 146 (182)
+.+..+.++|..+|=+
T Consensus 79 ~~ap~a~~aG~~VIDn 94 (322)
T PRK06901 79 EHLAQAAEAGCIVIDL 94 (322)
T ss_pred HHHHHHHHCCCEEEEC
Confidence 9999999999888754
No 347
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=92.76 E-value=0.76 Score=36.99 Aligned_cols=83 Identities=20% Similarity=0.192 Sum_probs=51.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccC--CcE-EEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--ANA-SVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~--~Dv-aVdfVpp~av~~a~~ 134 (182)
.++|+|.|++|..|..+++.+.+.|.+|+ .++..... . ....+.+.+.. +++ ..|...++.+.+.++
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~~V~--~~~r~~~~--~------~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGAEVI--VVDICGDD--A------AATAELVEAAGGKARARQVDVRDRAALKAAVA 75 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCCEEE--EEeCCHHH--H------HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 45799999999999999999999998888 55543211 0 01111111111 222 235667788888777
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
+..+. .+..|++ ..|.
T Consensus 76 ~~~~~~~~~d~vi~-~ag~ 93 (251)
T PRK12826 76 AGVEDFGRLDILVA-NAGI 93 (251)
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 76654 5777777 4433
No 348
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=92.76 E-value=0.44 Score=37.99 Aligned_cols=87 Identities=11% Similarity=0.099 Sum_probs=55.4
Q ss_pred EEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE--------e--cCccccccHHHHHhccCCcEEEEeeChH---
Q 030169 61 VICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE--------H--LGLPVFNSVAEAKAETKANASVIYVPPP--- 127 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~--------i--~GvPVy~Sv~ea~~~~~~DvaVdfVpp~--- 127 (182)
|+|.|++|-.|+.+++.+++.|.+++ +-......... . .++-=-..++++++..++|+++.+.-..
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~ 79 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVI-VLSRSSNSESFEEKKLNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAFSSNP 79 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEE-EEESCSTGGHHHHHHTTEEEEESETTSHHHHHHHHHHHTESEEEEEBSSSSHH
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccc-cccccccccccccccceEEEEEeeccccccccccccccCceEEEEeecccccc
Confidence 78999999999999999999998877 33322221100 0 1122122367777766789999886542
Q ss_pred ---------------HHHHHHHHHHHcCCCEEEEeC
Q 030169 128 ---------------FAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 128 ---------------av~~a~~eAie~GIk~VV~iT 148 (182)
....+++.|.+++++.++.++
T Consensus 80 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~s 115 (236)
T PF01370_consen 80 ESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLS 115 (236)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccc
Confidence 123455667788985555434
No 349
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=92.74 E-value=0.89 Score=39.03 Aligned_cols=89 Identities=16% Similarity=0.100 Sum_probs=64.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC--CceEEe-----eccCCCCCeEecCcc-ccccHHHHHhc-cCCcEEEEe-----
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG--TKMVVG-----GVTPKKGGTEHLGLP-VFNSVAEAKAE-TKANASVIY----- 123 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g--~~IV~A-----gVdp~~~G~~i~GvP-Vy~Sv~ea~~~-~~~DvaVdf----- 123 (182)
++.+.|.|+||--|+.+.+.+.|.+ -+++ + .+||.... .+.-.. =|+.+++.... ..+|+....
T Consensus 18 ~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~-~i~RR~~~d~at~k-~v~q~~vDf~Kl~~~a~~~qg~dV~FcaLgTTR 95 (238)
T KOG4039|consen 18 NMSGFVLGATGLCGGGLLKHAQEAPQFSKVY-AILRRELPDPATDK-VVAQVEVDFSKLSQLATNEQGPDVLFCALGTTR 95 (238)
T ss_pred ccceEEEeccccccHHHHHHHHhcccceeEE-EEEeccCCCccccc-eeeeEEechHHHHHHHhhhcCCceEEEeecccc
Confidence 5779999999999999999999877 4555 4 35665532 333222 24446665443 478988754
Q ss_pred ----------eChHHHHHHHHHHHHcCCCEEEEeC
Q 030169 124 ----------VPPPFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 124 ----------Vpp~av~~a~~eAie~GIk~VV~iT 148 (182)
|.++.+.+.++.|-+.|++.++-++
T Consensus 96 gkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvS 130 (238)
T KOG4039|consen 96 GKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVS 130 (238)
T ss_pred cccccCceEeechHHHHHHHHHHHhCCCeEEEEEe
Confidence 6788999999999999999987654
No 350
>PRK14031 glutamate dehydrogenase; Provisional
Probab=92.74 E-value=0.5 Score=44.43 Aligned_cols=33 Identities=24% Similarity=0.478 Sum_probs=28.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccC
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTP 92 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp 92 (182)
+..||+|||+ |+.|+..++.+.+.|.+|| +|.+
T Consensus 227 ~g~rVaVQGf-GNVG~~aA~~L~e~GAkVV--aVSD 259 (444)
T PRK14031 227 KGKVCLVSGS-GNVAQYTAEKVLELGGKVV--TMSD 259 (444)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEE--EEEC
Confidence 4578999999 9999999999999999999 4444
No 351
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=92.72 E-value=0.85 Score=38.92 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=56.4
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe------------E----ecCccccccHHHHHhccCCcE
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT------------E----HLGLPVFNSVAEAKAETKANA 119 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~------------~----i~GvPVy~Sv~ea~~~~~~Dv 119 (182)
+..++|+|.|++|-.|+.+++.+.+.|.+|+....++..... . ..++--..+++++.+ ++|+
T Consensus 3 ~~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~ 80 (325)
T PLN02989 3 DGGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAID--GCET 80 (325)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHc--CCCE
Confidence 445789999999999999999999999888722345432110 0 012333334556665 6888
Q ss_pred EEEeeCh----------HH--------HHHHHHHHHHc-CCCEEEEeCC
Q 030169 120 SVIYVPP----------PF--------AAAAIMEAMEA-ELDLVVCITE 149 (182)
Q Consensus 120 aVdfVpp----------~a--------v~~a~~eAie~-GIk~VV~iTe 149 (182)
++-+... .. +..+++.|.+. +++.||.+++
T Consensus 81 vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS 129 (325)
T PLN02989 81 VFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSS 129 (325)
T ss_pred EEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 8776631 11 23445555554 5666666554
No 352
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.71 E-value=0.31 Score=39.16 Aligned_cols=83 Identities=19% Similarity=0.194 Sum_probs=52.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc--cCCc-EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE--TKAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~--~~~D-vaVdfVpp~av~~a~~e 135 (182)
.+++|.|++|.+|+.+++.+.+.|.+++ ..++..... . ..+.+.... .++. ...|+..++.+.+++++
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~-~~~~r~~~~--~------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 76 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVV-IAYDINEEA--A------QELLEEIKEEGGDAIAVKADVSSEEDVENLVEQ 76 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEcCCCHHH--H------HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 4799999999999999999998898888 332433211 0 011111111 1222 23577778888888877
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
..+. ++..||. ..|.
T Consensus 77 ~~~~~~~id~vi~-~ag~ 93 (247)
T PRK05565 77 IVEKFGKIDILVN-NAGI 93 (247)
T ss_pred HHHHhCCCCEEEE-CCCc
Confidence 7664 6888877 5554
No 353
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.71 E-value=0.74 Score=37.03 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=52.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccH-HHHHhccCCc-EEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSV-AEAKAETKAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv-~ea~~~~~~D-vaVdfVpp~av~~a~~e 135 (182)
..+|+|.|++|..|+.+++.+.+.|.+|+ +++..... .+ .+ ++..+...+. +-.|+..++.+.+++++
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~~V~--~~~r~~~~-----~~---~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 74 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGAQVC--INSRNENK-----LK---RMKKTLSKYGNIHYVVGDVSSTESARNVIEK 74 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEE--EEeCCHHH-----HH---HHHHHHHhcCCeEEEECCCCCHHHHHHHHHH
Confidence 35799999999999999999999999888 55554311 11 11 1111101121 23466777888887777
Q ss_pred HHH--cCCCEEEEeCCC
Q 030169 136 AME--AELDLVVCITEG 150 (182)
Q Consensus 136 Aie--~GIk~VV~iTeG 150 (182)
+.. .++..++. +.|
T Consensus 75 ~~~~~~~id~ii~-~ag 90 (238)
T PRK05786 75 AAKVLNAIDGLVV-TVG 90 (238)
T ss_pred HHHHhCCCCEEEE-cCC
Confidence 654 35777776 444
No 354
>PRK07062 short chain dehydrogenase; Provisional
Probab=92.68 E-value=1.1 Score=36.82 Aligned_cols=84 Identities=15% Similarity=0.093 Sum_probs=56.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-CCc---EEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KAN---ASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~D---vaVdfVpp~av~~a~ 133 (182)
...++|.|++|..|+.+++.+.+.|.+|+ .++..... .. ...+++.+.. +.+ +..|...++.+.+++
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~~V~--~~~r~~~~--~~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 78 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGASVA--ICGRDEER--LA-----SAEARLREKFPGARLLAARCDVLDEADVAAFA 78 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEE--EEeCCHHH--HH-----HHHHHHHhhCCCceEEEEEecCCCHHHHHHHH
Confidence 35699999999999999999999999888 45443311 10 0112222211 112 456888999999988
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. ++..+|+ ..|+
T Consensus 79 ~~~~~~~g~id~li~-~Ag~ 97 (265)
T PRK07062 79 AAVEARFGGVDMLVN-NAGQ 97 (265)
T ss_pred HHHHHhcCCCCEEEE-CCCC
Confidence 888764 5777777 6664
No 355
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=92.67 E-value=1.3 Score=36.56 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=53.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCC-cEEEEeeChHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~-DvaVdfVpp~av~~a~~eA 136 (182)
..++|.|++|..|+.+++.+.+.|.+++ +++..... ...+++.+. .++ -+-.|...++.+.++++++
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv--~~~~~~~~---------~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 79 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIV--GINIVEPT---------ETIEQVTALGRRFLSLTADLRKIDGIPALLERA 79 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEE--EecCcchH---------HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 5689999999999999999999999988 55543211 111221110 011 2345667788888888888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|. ..|+
T Consensus 80 ~~~~~~~D~li~-~Ag~ 95 (253)
T PRK08993 80 VAEFGHIDILVN-NAGL 95 (253)
T ss_pred HHHhCCCCEEEE-CCCC
Confidence 766 4667776 6554
No 356
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=92.66 E-value=0.6 Score=39.20 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=50.9
Q ss_pred EEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCCCeEec---Ccccccc------HHHHHhc--cCCcEEEEeeCh--
Q 030169 61 VICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKGGTEHL---GLPVFNS------VAEAKAE--TKANASVIYVPP-- 126 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~G~~i~---GvPVy~S------v~ea~~~--~~~DvaVdfVpp-- 126 (182)
|+|.|++|-.|+.+++.+.+.|. +++ +++......... +..+..+ ++.+.++ .++|+++-+...
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A~~~~ 78 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDIL--VVDNLRDGHKFLNLADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQGACSD 78 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEE--EEecCCCchhhhhhhheeeeccCcchhHHHHHHhhccCCCCEEEECccccC
Confidence 68999999999999999999896 566 554332221111 1112222 2222221 379999876632
Q ss_pred --------------HHHHHHHHHHHHcCCCEEEE
Q 030169 127 --------------PFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 127 --------------~av~~a~~eAie~GIk~VV~ 146 (182)
..+..+++.|.+++++.|..
T Consensus 79 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~ 112 (314)
T TIGR02197 79 TTETDGEYMMENNYQYSKRLLDWCAEKGIPFIYA 112 (314)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 22345677788888875554
No 357
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=92.65 E-value=0.092 Score=47.01 Aligned_cols=73 Identities=25% Similarity=0.264 Sum_probs=48.4
Q ss_pred ccCCCCCeEe-------cCccccccHHHHHhccCCcEEEEeeChH------HHHHHHHHHHHcCCCEEEEeCCCCCHHHH
Q 030169 90 VTPKKGGTEH-------LGLPVFNSVAEAKAETKANASVIYVPPP------FAAAAIMEAMEAELDLVVCITEGIPQHDM 156 (182)
Q Consensus 90 Vdp~~~G~~i-------~GvPVy~Sv~ea~~~~~~DvaVdfVpp~------av~~a~~eAie~GIk~VV~iTeG~~~eD~ 156 (182)
+|+...|++. .|+|+|.+++++. .++|+.|+-+-|. .-.+.+.+|+++|...|-+ =|....|.
T Consensus 1 ID~~~aG~~a~e~~~~~~~iPi~~~~~~a~--~~~~~liiGiA~~GG~lp~~w~~~i~~Ai~~Gl~IvsG--LH~~L~dd 76 (301)
T PF07755_consen 1 IDSRLAGKDAGEVLGGKRGIPIVASLEEAA--AGADTLIIGIAPAGGRLPPSWRPVILEAIEAGLDIVSG--LHDFLSDD 76 (301)
T ss_dssp E-TTTTTSBHHHCCSSSS--BEESSHHHHH--CT-SEEEE---STTHCCHCCHHHHHHHHHHTT-EEEE---SSS-HCCH
T ss_pred CCcccCCCcHHHhcCCCCCCCccCCHHHHh--cCCCEEEEecCcCCCcCCHHHHHHHHHHHHcCCCEEec--ChhhhccC
Confidence 3555666554 6999999999993 4899999987543 3458999999999988776 44577778
Q ss_pred HHHHHHhccc
Q 030169 157 VINFTRVNIL 166 (182)
Q Consensus 157 ~~l~~~ak~i 166 (182)
.+|.++|++-
T Consensus 77 pel~~~A~~~ 86 (301)
T PF07755_consen 77 PELAAAAKKN 86 (301)
T ss_dssp HHHHCCHHCC
T ss_pred HHHHHHHHHc
Confidence 8888888763
No 358
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=92.63 E-value=0.92 Score=37.49 Aligned_cols=81 Identities=15% Similarity=0.179 Sum_probs=56.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|+++..|+.+++.+.+.|.+++ .++.... +..++..++...+ +.+|...++.+.++++
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~vv--~~~~~~~----------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGADIV--GVGVAEA----------PETQAQVEALGRKFHFITADLIQQKDIDSIVS 75 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE--EecCchH----------HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH
Confidence 46789999999999999999999999988 4443221 0112222222222 3568889999999999
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|+ ..|+
T Consensus 76 ~~~~~~g~iD~lv~-~ag~ 93 (251)
T PRK12481 76 QAVEVMGHIDILIN-NAGI 93 (251)
T ss_pred HHHHHcCCCCEEEE-CCCc
Confidence 88765 5777877 6665
No 359
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=92.62 E-value=0.61 Score=38.39 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=54.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccC--Cc-EEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--AN-ASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~--~D-vaVdfVpp~av~~a~ 133 (182)
+..+|+|.|++|..|..+++.+.+.|.+++ .++..... ..+.+...+.. +. +..|...++.+.+++
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~--~~~~~~~~---------~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~ 82 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGADII--ITTHGTNW---------DETRRLIEKEGRKVTFVQVDLTKPESAEKVV 82 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEE--EEeCCcHH---------HHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 346799999999999999999999998887 34332211 11222222111 21 345677788888888
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
++..+. ++..+|. ..|.
T Consensus 83 ~~~~~~~g~id~li~-~ag~ 101 (258)
T PRK06935 83 KEALEEFGKIDILVN-NAGT 101 (258)
T ss_pred HHHHHHcCCCCEEEE-CCCC
Confidence 888766 5788887 6554
No 360
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.61 E-value=0.34 Score=41.46 Aligned_cols=89 Identities=13% Similarity=0.146 Sum_probs=54.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeE------------e---------------c-C--ccccc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTE------------H---------------L-G--LPVFN 106 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~------------i---------------~-G--vPVy~ 106 (182)
+.+|+|+|+ |..|+.+++.+...| .++. -+|+...... + + . +-.++
T Consensus 11 ~~~VlVvG~-GGvGs~va~~Lar~GVg~i~--LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~ 87 (231)
T cd00755 11 NAHVAVVGL-GGVGSWAAEALARSGVGKLT--LIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE 87 (231)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCCCEEE--EECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence 468999999 999999999999988 4555 5554432211 0 0 1 11111
Q ss_pred ------cHHHHHhccCCcEEEEeeCh-HHHHHHHHHHHHcCCCEEEEeCCC
Q 030169 107 ------SVAEAKAETKANASVIYVPP-PFAAAAIMEAMEAELDLVVCITEG 150 (182)
Q Consensus 107 ------Sv~ea~~~~~~DvaVdfVpp-~av~~a~~eAie~GIk~VV~iTeG 150 (182)
+..+... .++|++|+.+-. ..-..+.+.|.++++|.|.+.+.|
T Consensus 88 ~~i~~~~~~~l~~-~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g 137 (231)
T cd00755 88 EFLTPDNSEDLLG-GDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAG 137 (231)
T ss_pred eecCHhHHHHHhc-CCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 2333332 157888887543 333456777778888888776655
No 361
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=92.61 E-value=0.8 Score=37.86 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=54.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|..+++.+.+.|.+|+ .++.... .++++.+.. ++. +-.|...++.+.++++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~V~--~~~r~~~-----------~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 71 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGARVA--VLDKSAA-----------GLQELEAAHGDAVVGVEGDVRSLDDHKEAVA 71 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHhhcCCceEEEEeccCCHHHHHHHHH
Confidence 46799999999999999999999999988 4443321 112222211 121 3456777888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. .+..+|+ ..|+
T Consensus 72 ~~~~~~g~id~li~-~Ag~ 89 (262)
T TIGR03325 72 RCVAAFGKIDCLIP-NAGI 89 (262)
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 87764 5777777 6564
No 362
>PTZ00325 malate dehydrogenase; Provisional
Probab=92.57 E-value=0.76 Score=41.18 Aligned_cols=100 Identities=15% Similarity=0.041 Sum_probs=62.7
Q ss_pred ecCCceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCC-CCeEec-------Cccccc--c---HHHHHhccCCcE
Q 030169 55 VDKNTRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKK-GGTEHL-------GLPVFN--S---VAEAKAETKANA 119 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~-~G~~i~-------GvPVy~--S---v~ea~~~~~~Dv 119 (182)
+++..||.|+|+.|+.|+.++..+...+ -+++ .+|..+ .| +.. ...+.. + ..++++ ++|+
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elv--L~Di~~~~g-~a~Dl~~~~~~~~v~~~td~~~~~~~l~--gaDv 79 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELS--LYDIVGAPG-VAADLSHIDTPAKVTGYADGELWEKALR--GADL 79 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEE--EEecCCCcc-cccchhhcCcCceEEEecCCCchHHHhC--CCCE
Confidence 4567799999999999999988777444 4555 555432 23 111 133432 1 245666 7999
Q ss_pred EEEeeChH----------------HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Q 030169 120 SVIYVPPP----------------FAAAAIMEAMEAELDLVVCITEGIPQHDMVINF 160 (182)
Q Consensus 120 aVdfVpp~----------------av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~ 160 (182)
+|+..-.. .+.+++..+.++|++.+|++++ -|..-+..+.
T Consensus 80 VVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~S-NPvdv~~~~~ 135 (321)
T PTZ00325 80 VLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVS-NPVNSTVPIA 135 (321)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec-CcHHHHHHHH
Confidence 99765431 4456667777889998877443 4444444443
No 363
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.57 E-value=1.5 Score=37.91 Aligned_cols=97 Identities=15% Similarity=0.133 Sum_probs=71.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCCCCeEecCcccccc-HHHHHhc-cCCcEEEEe-eChHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKGGTEHLGLPVFNS-VAEAKAE-TKANASVIY-VPPPFAAAAI 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~G~~i~GvPVy~S-v~ea~~~-~~~DvaVdf-Vpp~av~~a~ 133 (182)
+||+|+.- |..|...+++++..+ .+++ +-..+ . + .+|.|=+ .++.+.. .++|++|-+ .+|+..+.+.
T Consensus 2 mki~vlt~-g~yG~R~~~nl~~~~f~~~~v-~v~~~-P-e----~~~~fie~P~~~Lp~~~e~Di~va~~lHPDl~~~L~ 73 (224)
T COG1810 2 MKILVLTD-GEYGKRAVNNLACKGFKNQFV-AVKEY-P-E----ELPDFIEEPEDLLPKLPEADIVVAYGLHPDLLLALP 73 (224)
T ss_pred cEEEEEee-ccchHHHHHhHhhhccccceE-EEEec-c-c----cccchhhCHHHhcCCCCCCCEEEEeccCccHHHHHH
Confidence 68889887 999999999888654 6777 54444 2 1 2444433 6666655 578999998 9999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhc
Q 030169 134 MEAMEAELDLVVCITEGIPQHDMVINFTRVN 164 (182)
Q Consensus 134 ~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak 164 (182)
++|.+.|++.+++ ..+=+.--..+|.+...
T Consensus 74 e~~~~~~~~alIv-p~~~~~g~rkqL~~~~~ 103 (224)
T COG1810 74 EKAAEGGVKALIV-PAEPPEGLRKQLKEFCE 103 (224)
T ss_pred HHHHhCCccEEEE-ecCCChhHHHHHHHHhh
Confidence 9999999999887 55555555555555554
No 364
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.56 E-value=0.94 Score=36.90 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=53.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+|+ .++..... . -...+++ .+...+ +..|+..++.+.+++.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~~v~--~~~r~~~~--~-----~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGAAVA--IADLNQDG--A-----NAVADEI-NKAGGKAIGVAMDVTNEDAVNAGID 76 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEE--EEeCChHH--H-----HHHHHHH-HhcCceEEEEECCCCCHHHHHHHHH
Confidence 35699999999999999999999998888 44443311 0 1111221 211222 3457788888888877
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|. ..|.
T Consensus 77 ~~~~~~~~~d~vi~-~ag~ 94 (262)
T PRK13394 77 KVAERFGSVDILVS-NAGI 94 (262)
T ss_pred HHHHHcCCCCEEEE-CCcc
Confidence 76543 4777777 5554
No 365
>PRK07024 short chain dehydrogenase; Provisional
Probab=92.54 E-value=0.81 Score=37.69 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=52.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eAi 137 (182)
++|+|.|++|-.|+.+++.+.+.|.+++ .++..... .. ...+++....+++ +.+|...++.+.+++++..
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~--~~~r~~~~--~~-----~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~ 73 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLG--LVARRTDA--LQ-----AFAARLPKAARVSVYAADVRDADALAAAAADFI 73 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHH
Confidence 5799999999999999999999998888 44433211 00 0011111100121 3467778888888888876
Q ss_pred Hc-C-CCEEEEeCCCC
Q 030169 138 EA-E-LDLVVCITEGI 151 (182)
Q Consensus 138 e~-G-Ik~VV~iTeG~ 151 (182)
+. | +..+|+ ..|+
T Consensus 74 ~~~g~id~lv~-~ag~ 88 (257)
T PRK07024 74 AAHGLPDVVIA-NAGI 88 (257)
T ss_pred HhCCCCCEEEE-CCCc
Confidence 54 4 677776 6564
No 366
>PRK07677 short chain dehydrogenase; Provisional
Probab=92.51 E-value=0.62 Score=38.20 Aligned_cols=81 Identities=14% Similarity=0.076 Sum_probs=52.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~e 135 (182)
++++|.|++|..|+.+++.+.+.|.+|+ .++..... . ..+.+-.++. +++ +-.|.+.++.+.+++++
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi--~~~r~~~~--~------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVV--ITGRTKEK--L------EEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQ 71 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEE--EEeCCHHH--H------HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 4689999999999999999999998888 44433210 1 1111111111 111 23467788888888888
Q ss_pred HHHc--CCCEEEEeCCC
Q 030169 136 AMEA--ELDLVVCITEG 150 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG 150 (182)
..+. ++..+|. ..|
T Consensus 72 ~~~~~~~id~lI~-~ag 87 (252)
T PRK07677 72 IDEKFGRIDALIN-NAA 87 (252)
T ss_pred HHHHhCCccEEEE-CCC
Confidence 8765 5777777 444
No 367
>PRK08226 short chain dehydrogenase; Provisional
Probab=92.48 E-value=0.72 Score=37.89 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=54.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHh-ccCCc-EEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKA-ETKAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~-~~~~D-vaVdfVpp~av~~a~~e 135 (182)
..+++|.|++|..|+.+++.+.+.|.+++ .++..... . ...++... ..+++ +..|...++.+.+++++
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~~Vv--~~~r~~~~-----~---~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 75 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGANLI--LLDISPEI-----E---KLADELCGRGHRCTAVVADVRDPASVAAAIKR 75 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEE--EecCCHHH-----H---HHHHHHHHhCCceEEEECCCCCHHHHHHHHHH
Confidence 46799999999999999999999998887 66553210 0 11112111 11222 35677888888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
..+. .+..+|. ..|+
T Consensus 76 ~~~~~~~id~vi~-~ag~ 92 (263)
T PRK08226 76 AKEKEGRIDILVN-NAGV 92 (263)
T ss_pred HHHHcCCCCEEEE-CCCc
Confidence 7765 5777776 6564
No 368
>PRK07904 short chain dehydrogenase; Provisional
Probab=92.48 E-value=0.61 Score=38.87 Aligned_cols=89 Identities=16% Similarity=0.141 Sum_probs=55.2
Q ss_pred ecCCceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeEecCccccccHHHHHhccC--C-cEEEEeeChHHHH
Q 030169 55 VDKNTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--A-NASVIYVPPPFAA 130 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~--~-DvaVdfVpp~av~ 130 (182)
+++..+|+|.|++|..|+.+++.+.+.| .+++ .++..... ... ...+++.+... + -+..|...++.+.
T Consensus 5 ~~~~~~vlItGas~giG~~la~~l~~~gg~~V~--~~~r~~~~-~~~-----~~~~~l~~~~~~~v~~~~~D~~~~~~~~ 76 (253)
T PRK07904 5 VGNPQTILLLGGTSEIGLAICERYLKNAPARVV--LAALPDDP-RRD-----AAVAQMKAAGASSVEVIDFDALDTDSHP 76 (253)
T ss_pred cCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEE--EEeCCcch-hHH-----HHHHHHHhcCCCceEEEEecCCChHHHH
Confidence 4556789999999999999999998875 7887 33332210 000 01222222111 1 2345677788888
Q ss_pred HHHHHHHHc-CCCEEEEeCCCCC
Q 030169 131 AAIMEAMEA-ELDLVVCITEGIP 152 (182)
Q Consensus 131 ~a~~eAie~-GIk~VV~iTeG~~ 152 (182)
+.++++.+. ++..+|+ ..|+.
T Consensus 77 ~~~~~~~~~g~id~li~-~ag~~ 98 (253)
T PRK07904 77 KVIDAAFAGGDVDVAIV-AFGLL 98 (253)
T ss_pred HHHHHHHhcCCCCEEEE-eeecC
Confidence 888887764 5777765 55553
No 369
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=92.47 E-value=0.54 Score=41.39 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=69.1
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~ 133 (182)
+..+++|.|+++..|.++++.+.+.|.+++ .|.....- . .-++..++ +++ +++ +.+|.+-++.+..+.
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~li--LvaR~~~k--L--~~la~~l~---~~~~v~v~vi~~DLs~~~~~~~l~ 75 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLI--LVARREDK--L--EALAKELE---DKTGVEVEVIPADLSDPEALERLE 75 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEE--EEeCcHHH--H--HHHHHHHH---HhhCceEEEEECcCCChhHHHHHH
Confidence 345799999999999999999999999999 88876632 1 11222222 222 232 356888889999998
Q ss_pred HHHHHc--CCCEEEEeCCC------CCHHHHHHHHHHhcccchh
Q 030169 134 MEAMEA--ELDLVVCITEG------IPQHDMVINFTRVNILLVA 169 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG------~~~eD~~~l~~~ak~ipv~ 169 (182)
++..+. .|...|+ -.| |.+.+.+++.++-+-.-+|
T Consensus 76 ~~l~~~~~~IdvLVN-NAG~g~~g~f~~~~~~~~~~mi~lN~~a 118 (265)
T COG0300 76 DELKERGGPIDVLVN-NAGFGTFGPFLELSLDEEEEMIQLNILA 118 (265)
T ss_pred HHHHhcCCcccEEEE-CCCcCCccchhhCChHHHHHHHHHHHHH
Confidence 888888 6777776 433 4555555555554433333
No 370
>PRK09135 pteridine reductase; Provisional
Probab=92.45 E-value=0.99 Score=36.26 Aligned_cols=85 Identities=14% Similarity=0.076 Sum_probs=53.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~ 134 (182)
..+|+|.|++|..|+.+++.+.+.|.+++ +++...... .. ....++.+.. .+. +..|.+..+.+..++.
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~~v~--~~~r~~~~~-~~-----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 77 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGYRVA--IHYHRSAAE-AD-----ALAAELNALRPGSAAALQADLLDPDALPELVA 77 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE--EEcCCCHHH-HH-----HHHHHHHhhcCCceEEEEcCCCCHHHHHHHHH
Confidence 35799999999999999999999999888 666543110 00 0001111110 111 2346677777788877
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..|+. ..|.
T Consensus 78 ~~~~~~~~~d~vi~-~ag~ 95 (249)
T PRK09135 78 ACVAAFGRLDALVN-NASS 95 (249)
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 77665 5677777 5553
No 371
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=92.45 E-value=0.38 Score=41.65 Aligned_cols=83 Identities=25% Similarity=0.249 Sum_probs=58.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe----cCcccc-------ccHHHHHhccCCcEEEEeeChH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH----LGLPVF-------NSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i----~GvPVy-------~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
|||+|.|.| ..|+.+++.+.+.|. +. .-|.-..+++.. .+++|. +.+++.++++++|++||.++|-
T Consensus 1 m~ILvlgGT-tE~r~la~~L~~~g~-v~-~sv~t~~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPf 77 (249)
T PF02571_consen 1 MKILVLGGT-TEGRKLAERLAEAGY-VI-VSVATSYGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHPF 77 (249)
T ss_pred CEEEEEech-HHHHHHHHHHHhcCC-EE-EEEEhhhhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCch
Confidence 589999974 478999999999886 55 444333333222 122332 2367778888999999999998
Q ss_pred HHH---HHHHHHHHcCCCEE
Q 030169 128 FAA---AAIMEAMEAELDLV 144 (182)
Q Consensus 128 av~---~a~~eAie~GIk~V 144 (182)
+.. .+.+-|-+.||+.+
T Consensus 78 A~~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 78 AAEISQNAIEACRELGIPYL 97 (249)
T ss_pred HHHHHHHHHHHHhhcCcceE
Confidence 765 66677778899987
No 372
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.45 E-value=0.59 Score=42.10 Aligned_cols=89 Identities=13% Similarity=0.016 Sum_probs=53.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeEec----------------------------Cccc--cc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTEHL----------------------------GLPV--FN 106 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~i~----------------------------GvPV--y~ 106 (182)
+.||+|+|+ |-.|..+++.+...| .+|. -||+........ .+.| ++
T Consensus 28 ~~~VlivG~-GGlGs~~a~~La~~Gvg~i~--lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~ 104 (355)
T PRK05597 28 DAKVAVIGA-GGLGSPALLYLAGAGVGHIT--IIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV 104 (355)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCCeEE--EEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence 478999999 999999999999998 4444 555544221100 1111 11
Q ss_pred ------cHHHHHhccCCcEEEEeeChHHHH-HHHHHHHHcCCCEEEEeCCCC
Q 030169 107 ------SVAEAKAETKANASVIYVPPPFAA-AAIMEAMEAELDLVVCITEGI 151 (182)
Q Consensus 107 ------Sv~ea~~~~~~DvaVdfVpp~av~-~a~~eAie~GIk~VV~iTeG~ 151 (182)
+..+.++ ++|++|+.+-..... -+-+.|.++++|.|.+-..|+
T Consensus 105 ~~i~~~~~~~~~~--~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~ 154 (355)
T PRK05597 105 RRLTWSNALDELR--DADVILDGSDNFDTRHLASWAAARLGIPHVWASILGF 154 (355)
T ss_pred eecCHHHHHHHHh--CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 1233444 677777776444333 344566677777776644444
No 373
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=92.44 E-value=0.13 Score=45.13 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=48.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-E--ecCccc--cccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-E--HLGLPV--FNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~--i~GvPV--y~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
..||+|+|+ |.+|+.+++.+...|.+|. .+++..... . ..|... |+++.+... ++|+++..+|+....+
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~~Ga~V~--v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~--~aDiVI~t~p~~~i~~ 225 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKALGANVT--VGARKSAHLARITEMGLSPFHLSELAEEVG--KIDIIFNTIPALVLTK 225 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCEEE--EEECCHHHHHHHHHcCCeeecHHHHHHHhC--CCCEEEECCChhhhhH
Confidence 578999998 9999999999999998888 444442110 0 123332 245666666 7999999999865443
No 374
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.43 E-value=0.73 Score=37.28 Aligned_cols=83 Identities=13% Similarity=0.086 Sum_probs=53.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|..+++.+.+.|.+|+ .++..... .. ....+. +..+.+ ...|+..++.+.++++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi--~~~r~~~~--~~-----~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGVNVG--LLARTEEN--LK-----AVAEEV-EAYGVKVVIATADVSDYEEVTAAIE 76 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHHH-HHhCCeEEEEECCCCCHHHHHHHHH
Confidence 35699999999999999999999999888 45443211 10 011121 211112 2446677888888877
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..||+ +.|.
T Consensus 77 ~~~~~~~~id~vi~-~ag~ 94 (239)
T PRK07666 77 QLKNELGSIDILIN-NAGI 94 (239)
T ss_pred HHHHHcCCccEEEE-cCcc
Confidence 77654 6888887 6554
No 375
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=92.42 E-value=0.43 Score=39.69 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=52.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCCCeEecCcccc----------ccHHHHHhccCCcEEEEeeCh
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKGGTEHLGLPVF----------NSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~G~~i~GvPVy----------~Sv~ea~~~~~~DvaVdfVpp 126 (182)
+.||+|+|+ |.+|+.+++.+...|. +++ .+|+.....+..+-=.| ...++.+.+..+++-+...+.
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~~Gvg~i~--lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~ 97 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLARAGIGKLI--LVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDE 97 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCCCEEE--EECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence 467999999 9999999999999995 566 66766322111110011 112333333355555555444
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHH
Q 030169 127 PFAAAAIMEAMEAELDLVVCITEGIPQH 154 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iTeG~~~e 154 (182)
....+.+.+.+ .+..+||.-++.+..+
T Consensus 98 ~i~~~~~~~~~-~~~DlVi~a~Dn~~~k 124 (200)
T TIGR02354 98 KITEENIDKFF-KDADIVCEAFDNAEAK 124 (200)
T ss_pred eCCHhHHHHHh-cCCCEEEECCCCHHHH
Confidence 44444444444 3567777634554444
No 376
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=92.41 E-value=0.21 Score=47.24 Aligned_cols=117 Identities=14% Similarity=0.122 Sum_probs=70.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-------------E------------ecCccccccHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-------------E------------HLGLPVFNSVAEA 111 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-------------~------------i~GvPVy~Sv~ea 111 (182)
+-.||.|+|+ |.||+.++..+...|.++++-.+++..... + ...+..-.++++
T Consensus 4 ~~~kV~VIGa-G~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~- 81 (503)
T TIGR02279 4 NVVTVAVIGA-GAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA- 81 (503)
T ss_pred CccEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-
Confidence 4567999999 999999999999999888722333322110 0 012445666765
Q ss_pred HhccCCcEEEEeeChHHH-HHHHHHHHHcCCC--EEEE-eCCCCCHHHHHH-HHHHhcccchhcch--hhhhh
Q 030169 112 KAETKANASVIYVPPPFA-AAAIMEAMEAELD--LVVC-ITEGIPQHDMVI-NFTRVNILLVAFLN--FIMKL 177 (182)
Q Consensus 112 ~~~~~~DvaVdfVpp~av-~~a~~eAie~GIk--~VV~-iTeG~~~eD~~~-l~~~ak~ipv~~~~--~~~~~ 177 (182)
.. ++|++|-.+|.+.. ++.+..-++.-.+ .|++ -|..++..++.. +.+-.+.+-+-|.| .+|+|
T Consensus 82 l~--~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~L 152 (503)
T TIGR02279 82 LA--DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMAL 152 (503)
T ss_pred hC--CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCce
Confidence 34 79999999997543 4443333554333 3442 378888876433 33333555555655 44454
No 377
>PRK07063 short chain dehydrogenase; Provisional
Probab=92.41 E-value=0.53 Score=38.69 Aligned_cols=84 Identities=18% Similarity=0.130 Sum_probs=54.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHh---ccCC-cEEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKA---ETKA-NASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~---~~~~-DvaVdfVpp~av~~a~ 133 (182)
..+++|.|++|..|+.+++.+.+.|.+++ .++..... . -...+++.+ ..++ -+..|...++.+.+++
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~~vv--~~~r~~~~--~-----~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGAAVA--LADLDAAL--A-----ERAAAAIARDVAGARVLAVPADVTDAASVAAAV 77 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEeCCHHH--H-----HHHHHHHHhccCCceEEEEEccCCCHHHHHHHH
Confidence 35699999999999999999999999888 44443211 0 011112111 0111 1345777888888888
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. ++..+|. ..|+
T Consensus 78 ~~~~~~~g~id~li~-~ag~ 96 (260)
T PRK07063 78 AAAEEAFGPLDVLVN-NAGI 96 (260)
T ss_pred HHHHHHhCCCcEEEE-CCCc
Confidence 887765 5777777 6664
No 378
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=92.41 E-value=0.41 Score=43.96 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=60.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHh-----CCceEEeeccCCCCCe----------------------------------Ee
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY-----GTKMVVGGVTPKKGGT----------------------------------EH 99 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~-----g~~IV~AgVdp~~~G~----------------------------------~i 99 (182)
.||.|-|| ||.|+.+.+.+.+. +++|| |-.||...-+ .+
T Consensus 4 ikVgINGF-GRIGR~v~R~~~~~~~~~~~ievV-AINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~i 81 (361)
T PTZ00434 4 IKVGINGF-GRIGRMVFQAICDQGLIGTEIDVV-AVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVV 81 (361)
T ss_pred eEEEEECc-ChHHHHHHHHHHHcccCCCCeEEE-EEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEE
Confidence 48999999 99999999987764 48899 7656421110 01
Q ss_pred cC--cccc---ccHHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 100 LG--LPVF---NSVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 100 ~G--vPVy---~Sv~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
+| +++| .++++++ .+.++|+++..+-.-...+-+..=++.|.|.|++
T Consensus 82 ng~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkVii 134 (361)
T PTZ00434 82 NGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVI 134 (361)
T ss_pred CCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEE
Confidence 22 4444 3466665 3458999998777777777777777899999887
No 379
>PRK07576 short chain dehydrogenase; Provisional
Probab=92.39 E-value=0.48 Score=39.49 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=53.2
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~ 133 (182)
+..+++|.|++|..|..+++.+.+.|.+|+ .++..... .. ...++..+ ...+ ..+|...++.+..++
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~~V~--~~~r~~~~--~~-----~~~~~~~~-~~~~~~~~~~Dv~~~~~i~~~~ 77 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGANVA--VASRSQEK--VD-----AAVAQLQQ-AGPEGLGVSADVRDYAAVEAAF 77 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHHHHH-hCCceEEEECCCCCHHHHHHHH
Confidence 345799999999999999999999998888 55544311 10 11112111 1112 235677888888888
Q ss_pred HHHHHc--CCCEEEE
Q 030169 134 MEAMEA--ELDLVVC 146 (182)
Q Consensus 134 ~eAie~--GIk~VV~ 146 (182)
+++.+. ++..+|+
T Consensus 78 ~~~~~~~~~iD~vi~ 92 (264)
T PRK07576 78 AQIADEFGPIDVLVS 92 (264)
T ss_pred HHHHHHcCCCCEEEE
Confidence 888764 5788887
No 380
>PRK05717 oxidoreductase; Validated
Probab=92.30 E-value=1.1 Score=36.68 Aligned_cols=80 Identities=18% Similarity=0.152 Sum_probs=53.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~e 135 (182)
.+++|.|++|..|+.+++.+.+.|.+++ .++..... .++..++. .+. +..|...++.+.+++++
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~--~~~~~~~~-----------~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVV--LADLDRER-----------GSKVAKALGENAWFIAMDVADEAQVAAGVAE 77 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEE--EEcCCHHH-----------HHHHHHHcCCceEEEEccCCCHHHHHHHHHH
Confidence 5699999999999999999999998888 44432211 11111111 111 35677788888888888
Q ss_pred HHHc--CCCEEEEeCCCCC
Q 030169 136 AMEA--ELDLVVCITEGIP 152 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~~ 152 (182)
+.+. .+..+|. ..|+.
T Consensus 78 ~~~~~g~id~li~-~ag~~ 95 (255)
T PRK05717 78 VLGQFGRLDALVC-NAAIA 95 (255)
T ss_pred HHHHhCCCCEEEE-CCCcc
Confidence 7764 4777777 55543
No 381
>PRK12937 short chain dehydrogenase; Provisional
Probab=92.26 E-value=1.1 Score=36.19 Aligned_cols=84 Identities=13% Similarity=0.116 Sum_probs=53.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+++ ....+.. . -...+.+...+. +++ +-+|...++.+.++++
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g~~v~-~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADGFAVA-VNYAGSA-A-------AADELVAEIEAAGGRAIAVQADVADAAAVTRLFD 75 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE-EecCCCH-H-------HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 45799999999999999999999998877 3222211 1 011111111111 122 2357778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
+..+. ++..++. ..|+
T Consensus 76 ~~~~~~~~id~vi~-~ag~ 93 (245)
T PRK12937 76 AAETAFGRIDVLVN-NAGV 93 (245)
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 87764 6777777 5664
No 382
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=92.23 E-value=0.93 Score=37.16 Aligned_cols=81 Identities=22% Similarity=0.192 Sum_probs=54.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+++ .++... . . -...+++.+ ...+ +..|...++.+.++++
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~~v~--~~~r~~-~--~-----~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~ 76 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGARVV--LVDRSE-L--V-----HEVAAELRA-AGGEALALTADLETYAGAQAAMA 76 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE--EEeCch-H--H-----HHHHHHHHh-cCCeEEEEEEeCCCHHHHHHHHH
Confidence 35699999999999999999999998888 444321 0 0 011122211 1223 3457788888888888
Q ss_pred HHHHc--CCCEEEEeCCC
Q 030169 135 EAMEA--ELDLVVCITEG 150 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG 150 (182)
++.+. ++..+|. ..|
T Consensus 77 ~~~~~~~~id~lv~-nAg 93 (260)
T PRK12823 77 AAVEAFGRIDVLIN-NVG 93 (260)
T ss_pred HHHHHcCCCeEEEE-CCc
Confidence 88775 5777776 555
No 383
>PRK07806 short chain dehydrogenase; Provisional
Probab=92.23 E-value=0.98 Score=36.64 Aligned_cols=83 Identities=18% Similarity=0.093 Sum_probs=51.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccC--C-cEEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--A-NASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~--~-DvaVdfVpp~av~~a~~e 135 (182)
.+++|.|++|..|+.+++.+.+.|.+++ .+..+... .. ..+.+.++... + -+-.|...++.+.+++++
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~--~~~r~~~~-~~------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVV--VNYRQKAP-RA------NKVVAEIEAAGGRASAVGADLTDEESVAALMDT 77 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEE--EEeCCchH-hH------HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 5799999999999999999999998888 33332211 00 11111121111 1 234577788888888777
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
..+. ++..+|. ..|.
T Consensus 78 ~~~~~~~~d~vi~-~ag~ 94 (248)
T PRK07806 78 AREEFGGLDALVL-NASG 94 (248)
T ss_pred HHHhCCCCcEEEE-CCCC
Confidence 6654 5676665 5544
No 384
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=92.22 E-value=0.71 Score=37.90 Aligned_cols=84 Identities=17% Similarity=0.098 Sum_probs=54.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~ 133 (182)
+..+++|.|++|-.|..+++.+.+.|.+++ .++..... . +...+.+.+. +++ .-.|...++...+++
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~~V~--~~~r~~~~--~------~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~ 80 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGARVV--LSARKAEE--L------EEAAAHLEALGIDALWIAADVADEADIERLA 80 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEE--EEeCCHHH--H------HHHHHHHHhcCCeEEEEEccCCCHHHHHHHH
Confidence 346799999999999999999999998887 44443211 0 0111111111 111 345778888888888
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. ++..||. ..|.
T Consensus 81 ~~~~~~~~~id~vi~-~ag~ 99 (259)
T PRK08213 81 EETLERFGHVDILVN-NAGA 99 (259)
T ss_pred HHHHHHhCCCCEEEE-CCCC
Confidence 887775 6788877 5553
No 385
>PRK06924 short chain dehydrogenase; Provisional
Probab=92.18 E-value=1.1 Score=36.48 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=46.9
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~eA 136 (182)
+++|.|++|..|+.+++.+.+.|.+|+ .++..... .++++.+.. ++ -+..|...++....+++++
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~--~~~r~~~~----------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 70 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVI--SISRTENK----------ELTKLAEQYNSNLTFHSLDLQDVHELETNFNEI 70 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEE--EEeCCchH----------HHHHHHhccCCceEEEEecCCCHHHHHHHHHHH
Confidence 689999999999999999999998888 55543211 122222211 22 2457778888888888887
Q ss_pred HHc
Q 030169 137 MEA 139 (182)
Q Consensus 137 ie~ 139 (182)
.+.
T Consensus 71 ~~~ 73 (251)
T PRK06924 71 LSS 73 (251)
T ss_pred HHh
Confidence 654
No 386
>PRK05876 short chain dehydrogenase; Provisional
Probab=92.17 E-value=0.96 Score=38.22 Aligned_cols=82 Identities=17% Similarity=0.119 Sum_probs=54.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~e 135 (182)
..++|.|++|..|+.+++.+.+.|.+|+ .++..... +. ...+++ ++...+ +..|...++.+.+++++
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv--~~~r~~~~-----l~--~~~~~l-~~~~~~~~~~~~Dv~d~~~v~~~~~~ 76 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVV--LGDVDKPG-----LR--QAVNHL-RAEGFDVHGVMCDVRHREEVTHLADE 76 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEE--EEeCCHHH-----HH--HHHHHH-HhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4699999999999999999999998888 33332211 10 012222 211222 34678889999999888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. .+..+|. ..|+
T Consensus 77 ~~~~~g~id~li~-nAg~ 93 (275)
T PRK05876 77 AFRLLGHVDVVFS-NAGI 93 (275)
T ss_pred HHHHcCCCCEEEE-CCCc
Confidence 8765 4777777 6664
No 387
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.17 E-value=1.1 Score=40.43 Aligned_cols=83 Identities=19% Similarity=0.222 Sum_probs=57.5
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIME 135 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~e 135 (182)
+..+++|.|++|..|..+++.+.+.|.+++ .++..... ..+++..++.+. -+.+|...++.+.+++++
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~Ga~vi--~~~~~~~~---------~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~ 277 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDGAHVV--CLDVPAAG---------EALAAVANRVGGTALALDITAPDAPARIAEH 277 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEE--EEeCCccH---------HHHHHHHHHcCCeEEEEeCCCHHHHHHHHHH
Confidence 346799999999999999999999999988 44432211 112232222222 345688888888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
..+. ++..||. ..|+
T Consensus 278 ~~~~~g~id~vi~-~AG~ 294 (450)
T PRK08261 278 LAERHGGLDIVVH-NAGI 294 (450)
T ss_pred HHHhCCCCCEEEE-CCCc
Confidence 7765 5888887 6665
No 388
>PRK08862 short chain dehydrogenase; Provisional
Probab=92.15 E-value=0.6 Score=38.61 Aligned_cols=82 Identities=6% Similarity=-0.023 Sum_probs=52.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
...++|.|+++..|..+++.+.+.|.+|+ .++..... .. .+ .++ +++...+ ...|...++.+.++++
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~~V~--~~~r~~~~--l~--~~---~~~-i~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGATLI--LCDQDQSA--LK--DT---YEQ-CSALTDNVYSFQLKDFSQESIRHLFD 74 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCCEEE--EEcCCHHH--HH--HH---HHH-HHhcCCCeEEEEccCCCHHHHHHHHH
Confidence 35689999999999999999999999988 44443311 10 01 111 1111222 2245677888888888
Q ss_pred HHHHc---CCCEEEEeCCC
Q 030169 135 EAMEA---ELDLVVCITEG 150 (182)
Q Consensus 135 eAie~---GIk~VV~iTeG 150 (182)
++.+. .+..+|+ ..|
T Consensus 75 ~~~~~~g~~iD~li~-nag 92 (227)
T PRK08862 75 AIEQQFNRAPDVLVN-NWT 92 (227)
T ss_pred HHHHHhCCCCCEEEE-CCc
Confidence 88765 4777777 443
No 389
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=92.09 E-value=1.8 Score=34.77 Aligned_cols=80 Identities=15% Similarity=0.089 Sum_probs=52.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc--cCC-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE--TKA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~--~~~-DvaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|..++ ..+.... .+++..+. .++ -...|....+.+.++++
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~~v~--~~~~~~~-----------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGAIVG--LHGTRVE-----------KLEALAAELGERVKIFPANLSDRDEVKALGQ 72 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE--EEcCCHH-----------HHHHHHHHhCCceEEEEccCCCHHHHHHHHH
Confidence 46799999999999999999999897665 3333221 11121111 122 23456778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
+..+. ++..+|. ..|.
T Consensus 73 ~~~~~~~~id~vi~-~ag~ 90 (245)
T PRK12936 73 KAEADLEGVDILVN-NAGI 90 (245)
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 77764 5777777 5554
No 390
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=92.08 E-value=0.54 Score=42.66 Aligned_cols=88 Identities=16% Similarity=0.178 Sum_probs=62.5
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-----------------ecCccccccHHHHHhccCCcE
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-----------------HLGLPVFNSVAEAKAETKANA 119 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-----------------i~GvPVy~Sv~ea~~~~~~Dv 119 (182)
..++|+|.|++|-.|+-+++.+++.|.+|. |-|-.....+. ..++--|+++.++.+ +||.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~-gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~--gcdg 81 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVR-GTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID--GCDG 81 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEE-EEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh--CCCE
Confidence 467899999999999999999999999998 65433322111 136778888999998 6777
Q ss_pred EEEeeCh-----------------HHHHHHHHHHHHcC-CCEEEEeC
Q 030169 120 SVIYVPP-----------------PFAAAAIMEAMEAE-LDLVVCIT 148 (182)
Q Consensus 120 aVdfVpp-----------------~av~~a~~eAie~G-Ik~VV~iT 148 (182)
++=.-.| ..+..+++-|.+.. ++.||. |
T Consensus 82 VfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~-T 127 (327)
T KOG1502|consen 82 VFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVY-T 127 (327)
T ss_pred EEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEE-e
Confidence 6532222 12345566666666 888886 6
No 391
>PRK06181 short chain dehydrogenase; Provisional
Probab=92.08 E-value=0.91 Score=37.26 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=52.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~e 135 (182)
.+|+|.|++|..|+.+++.+.+.|.+++ .++..... . ..+.+.+...+.. ...|...++...+++++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi--~~~r~~~~--~------~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 71 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGAQLV--LAARNETR--L------ASLAQELADHGGEALVVPTDVSDAEACERLIEA 71 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCCEEE--EEeCCHHH--H------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 4689999999999999999999998888 44443211 0 0111111111112 24467778888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. ++..||. ..|.
T Consensus 72 ~~~~~~~id~vi~-~ag~ 88 (263)
T PRK06181 72 AVARFGGIDILVN-NAGI 88 (263)
T ss_pred HHHHcCCCCEEEE-CCCc
Confidence 7765 6788887 5554
No 392
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=92.08 E-value=0.38 Score=38.95 Aligned_cols=84 Identities=18% Similarity=0.163 Sum_probs=52.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eA 136 (182)
+.+++|.|++|..|+.+++.+.+.|.+++ .++..... .. ...+.+.+... ++ -+..|...++.+.+.+++.
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~~v~--~~~r~~~~--~~--~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~ 74 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGAKVA--VFDLNREA--AE--KVAADIRAKGG--NAQAFACDITDRDSVDTAVAAA 74 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEE--EecCCHHH--HH--HHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHH
Confidence 46799999999999999999999998887 45443311 00 01111111100 11 1345666777788877776
Q ss_pred HHc--CCCEEEEeCCC
Q 030169 137 MEA--ELDLVVCITEG 150 (182)
Q Consensus 137 ie~--GIk~VV~iTeG 150 (182)
.+. ++..+|. ..|
T Consensus 75 ~~~~~~~d~vi~-~ag 89 (250)
T TIGR03206 75 EQALGPVDVLVN-NAG 89 (250)
T ss_pred HHHcCCCCEEEE-CCC
Confidence 654 5676776 444
No 393
>PRK09242 tropinone reductase; Provisional
Probab=92.03 E-value=0.95 Score=37.11 Aligned_cols=84 Identities=12% Similarity=0.073 Sum_probs=53.9
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-CCc---EEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KAN---ASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~D---vaVdfVpp~av~~a~ 133 (182)
..+++|.|++|..|+.+++.+.+.|.+|+ .++..... .-...+++.+.. +.+ +.+|+..++...+++
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~~v~--~~~r~~~~-------~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGADVL--IVARDADA-------LAQARDELAEEFPEREVHGLAADVSDDEDRRAIL 79 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEE--EEeCCHHH-------HHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHH
Confidence 46799999999999999999999998888 44432211 011112221110 112 245777888888888
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. ++..+|. ..|.
T Consensus 80 ~~~~~~~g~id~li~-~ag~ 98 (257)
T PRK09242 80 DWVEDHWDGLHILVN-NAGG 98 (257)
T ss_pred HHHHHHcCCCCEEEE-CCCC
Confidence 877654 5777777 6664
No 394
>PRK05866 short chain dehydrogenase; Provisional
Probab=92.03 E-value=0.5 Score=40.49 Aligned_cols=84 Identities=15% Similarity=0.225 Sum_probs=54.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+|+ .++.+... . ..+.+-..+...+ +..|...++.+.++++
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~~Vi--~~~R~~~~--l------~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~ 109 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGATVV--AVARREDL--L------DAVADRITRAGGDAMAVPCDLSDLDAVDALVA 109 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEECCHHH--H------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 35799999999999999999999999988 44443211 1 0111111111112 2356677888888877
Q ss_pred HHHHc--CCCEEEEeCCCCC
Q 030169 135 EAMEA--ELDLVVCITEGIP 152 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~~ 152 (182)
+..+. ++..+|+ ..|+.
T Consensus 110 ~~~~~~g~id~li~-~AG~~ 128 (293)
T PRK05866 110 DVEKRIGGVDILIN-NAGRS 128 (293)
T ss_pred HHHHHcCCCCEEEE-CCCCC
Confidence 76654 6888887 66653
No 395
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=92.03 E-value=0.65 Score=44.71 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=30.9
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHh-CCceEEeeccC
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEY-GTKMVVGGVTP 92 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~-g~~IV~AgVdp 92 (182)
-+.+.++|+|.|++|-.|+.+++.+.+. |.+|+ +++.
T Consensus 311 ~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~--~l~r 348 (660)
T PRK08125 311 SAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVY--GLDI 348 (660)
T ss_pred hhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEE--EEeC
Confidence 4556789999999999999999999975 68899 5554
No 396
>PRK12742 oxidoreductase; Provisional
Probab=92.02 E-value=1.2 Score=35.70 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=26.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMV 86 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV 86 (182)
..+|+|.|++|..|+.+++.+.+.|.+++
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~~v~ 34 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGANVR 34 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE
Confidence 35799999999999999999999998887
No 397
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=92.01 E-value=0.3 Score=47.11 Aligned_cols=102 Identities=20% Similarity=0.215 Sum_probs=60.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe-EecCccccc-c--HHHHHhc---cCCcEEEEeeChHH-H
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT-EHLGLPVFN-S--VAEAKAE---TKANASVIYVPPPF-A 129 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~-~i~GvPVy~-S--v~ea~~~---~~~DvaVdfVpp~a-v 129 (182)
..+|+|+|+ |+.|+.+++.+.+.|.++++=.-||..... ...|.+||. + =.|.+++ .++|+.++.++-+. .
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n 478 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTS 478 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHH
Confidence 467999999 999999999999999887711344443110 013666653 3 2222321 27899998887754 4
Q ss_pred HHHHHHHHHcCCCE-EEEeCCCCCHHHHHHHHHH
Q 030169 130 AAAIMEAMEAELDL-VVCITEGIPQHDMVINFTR 162 (182)
Q Consensus 130 ~~a~~eAie~GIk~-VV~iTeG~~~eD~~~l~~~ 162 (182)
..++..+.++..+. |++-+ -..++..++.++
T Consensus 479 ~~i~~~ar~~~p~~~iiaRa--~d~~~~~~L~~~ 510 (621)
T PRK03562 479 LQLVELVKEHFPHLQIIARA--RDVDHYIRLRQA 510 (621)
T ss_pred HHHHHHHHHhCCCCeEEEEE--CCHHHHHHHHHC
Confidence 45556666654332 33323 334555555543
No 398
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=92.00 E-value=0.52 Score=43.86 Aligned_cols=88 Identities=20% Similarity=0.132 Sum_probs=62.7
Q ss_pred cCCceEEEEccCCCCchhhhHHHHH-hCCceEEeeccCCCCCe----------E-----------------ecCcccccc
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIE-YGTKMVVGGVTPKKGGT----------E-----------------HLGLPVFNS 107 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~-~g~~IV~AgVdp~~~G~----------~-----------------i~GvPVy~S 107 (182)
++..||-++|+ |.||+-++.+... .|+++| |--|.+..+- + -+-+-|-++
T Consensus 15 G~PiRVGlIGA-G~mG~~ivtQi~~m~Gm~vv-aisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D 92 (438)
T COG4091 15 GKPIRVGLIGA-GEMGTGIVTQIASMPGMEVV-AISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDD 92 (438)
T ss_pred CCceEEEEecc-cccchHHHHHHhhcCCceEE-EEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecc
Confidence 45689999999 9999998776664 579999 6433322110 0 013444555
Q ss_pred HHHHHhccCCcEEEEeeC-hHHHHHHHHHHHHcCCCEEE
Q 030169 108 VAEAKAETKANASVIYVP-PPFAAAAIMEAMEAELDLVV 145 (182)
Q Consensus 108 v~ea~~~~~~DvaVdfVp-p~av~~a~~eAie~GIk~VV 145 (182)
.+++.....+|++|+.+- |....++..+|++||.++|.
T Consensus 93 ~~~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVM 131 (438)
T COG4091 93 AELIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLVM 131 (438)
T ss_pred hhhhhcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEEE
Confidence 666665557899999885 56777999999999999983
No 399
>PRK05875 short chain dehydrogenase; Provisional
Probab=91.99 E-value=0.39 Score=39.84 Aligned_cols=86 Identities=14% Similarity=0.050 Sum_probs=53.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
+.+++|.|++|..|+.+++.+.+.|.+|+ +++..... .. +....+.+.....++. +..|...++.+.++++++
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~~V~--~~~r~~~~--~~--~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGAAVM--IVGRNPDK--LA--AAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAA 80 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEE--EEeCCHHH--HH--HHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHH
Confidence 46799999999999999999999998887 55543311 11 0111111100000111 124667788888888887
Q ss_pred HHc--CCCEEEEeCCC
Q 030169 137 MEA--ELDLVVCITEG 150 (182)
Q Consensus 137 ie~--GIk~VV~iTeG 150 (182)
.+. ++..++. ..|
T Consensus 81 ~~~~~~~d~li~-~ag 95 (276)
T PRK05875 81 TAWHGRLHGVVH-CAG 95 (276)
T ss_pred HHHcCCCCEEEE-CCC
Confidence 765 5777776 554
No 400
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=91.99 E-value=0.35 Score=46.42 Aligned_cols=81 Identities=17% Similarity=0.159 Sum_probs=53.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC--CCe-EecCcccc-cc--HHHHHhc---cCCcEEEEeeChHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK--GGT-EHLGLPVF-NS--VAEAKAE---TKANASVIYVPPPF 128 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~--~G~-~i~GvPVy-~S--v~ea~~~---~~~DvaVdfVpp~a 128 (182)
+.+|+|+|+ |+.|+.+++.+.+.|.+++ .+|.+. ..+ ...|.|+| .+ =.|.+++ .++|+.+..++.+.
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vv--vID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~ 476 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKMRIT--VLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPE 476 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCCCEE--EEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHH
Confidence 467999999 9999999999999998888 555443 110 01356654 33 2222322 27899999998876
Q ss_pred HH-HHHHHHHHcCC
Q 030169 129 AA-AAIMEAMEAEL 141 (182)
Q Consensus 129 v~-~a~~eAie~GI 141 (182)
.. .++..+.+...
T Consensus 477 ~n~~i~~~~r~~~p 490 (601)
T PRK03659 477 DTMKIVELCQQHFP 490 (601)
T ss_pred HHHHHHHHHHHHCC
Confidence 66 55555555543
No 401
>PRK07831 short chain dehydrogenase; Provisional
Probab=91.96 E-value=1.7 Score=35.76 Aligned_cols=85 Identities=21% Similarity=0.230 Sum_probs=54.3
Q ss_pred CCceEEEEccCC-CCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc---CC-cEEEEeeChHHHHH
Q 030169 57 KNTRVICQGITG-KNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET---KA-NASVIYVPPPFAAA 131 (182)
Q Consensus 57 ~~trViVvG~tG-kmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~---~~-DvaVdfVpp~av~~ 131 (182)
+..+++|.|++| ..|..+++.+.+.|.+|+ .++..... .. ...+++.+.. ++ -+..|...++.+.+
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~--~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 86 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVV--ISDIHERR--LG-----ETADELAAELGLGRVEAVVCDVTSEAQVDA 86 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEE--EEeCCHHH--HH-----HHHHHHHHhcCCceEEEEEccCCCHHHHHH
Confidence 356799999997 699999999999998887 34433211 10 1112211111 12 23357788888888
Q ss_pred HHHHHHHc--CCCEEEEeCCCC
Q 030169 132 AIMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 132 a~~eAie~--GIk~VV~iTeG~ 151 (182)
+++++.+. ++..+|. ..|+
T Consensus 87 ~~~~~~~~~g~id~li~-~ag~ 107 (262)
T PRK07831 87 LIDAAVERLGRLDVLVN-NAGL 107 (262)
T ss_pred HHHHHHHHcCCCCEEEE-CCCC
Confidence 88888765 5677776 6664
No 402
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=91.94 E-value=1.3 Score=36.37 Aligned_cols=82 Identities=15% Similarity=0.107 Sum_probs=52.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
+.+++|.|++|-.|..+++.+.+.|.+++ .++..... .. .+.+.+. ..+. +..|...++.+.+++++.
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~~v~--~~~r~~~~--~~------~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~ 74 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGARVV--IADIKPAR--AR------LAALEIG-PAAIAVSLDVTRQDSIDRIVAAA 74 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEE--EEcCCHHH--HH------HHHHHhC-CceEEEEccCCCHHHHHHHHHHH
Confidence 35699999999999999999999999888 44443211 10 0111111 0122 344667788888888777
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. .+..+|. ..|.
T Consensus 75 ~~~~~~id~li~-~ag~ 90 (257)
T PRK07067 75 VERFGGIDILFN-NAAL 90 (257)
T ss_pred HHHcCCCCEEEE-CCCc
Confidence 654 4677776 5443
No 403
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.94 E-value=0.25 Score=45.22 Aligned_cols=84 Identities=24% Similarity=0.287 Sum_probs=48.2
Q ss_pred ecCCceEEEEccCCCCchh-hhHHHHHhCCceEEeeccCCCCCe--E--ecCccccc-cHHHHHhccCCcEEEEeeChHH
Q 030169 55 VDKNTRVICQGITGKNGTF-HTEQAIEYGTKMVVGGVTPKKGGT--E--HLGLPVFN-SVAEAKAETKANASVIYVPPPF 128 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~-v~k~~~~~g~~IV~AgVdp~~~G~--~--i~GvPVy~-Sv~ea~~~~~~DvaVdfVpp~a 128 (182)
+.+..+|.|+|+ |+.|.. +++.+.+.|.++. +.|.+.... + -.|++++. .-.+.++ ++|++|..-.-..
T Consensus 4 ~~~~~~v~viG~-G~sG~s~~a~~L~~~G~~V~--~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~--~~d~vv~spgi~~ 78 (461)
T PRK00421 4 LRRIKRIHFVGI-GGIGMSGLAEVLLNLGYKVS--GSDLKESAVTQRLLELGAIIFIGHDAENIK--DADVVVYSSAIPD 78 (461)
T ss_pred cCCCCEEEEEEE-chhhHHHHHHHHHhCCCeEE--EECCCCChHHHHHHHCCCEEeCCCCHHHCC--CCCEEEECCCCCC
Confidence 445678999999 999999 6889999999888 666543210 0 12555542 1122223 4665443221111
Q ss_pred HHHHHHHHHHcCCCE
Q 030169 129 AAAAIMEAMEAELDL 143 (182)
Q Consensus 129 v~~a~~eAie~GIk~ 143 (182)
-...+.+|.++|++.
T Consensus 79 ~~~~~~~a~~~~i~i 93 (461)
T PRK00421 79 DNPELVAARELGIPV 93 (461)
T ss_pred CCHHHHHHHHCCCcE
Confidence 123456666666655
No 404
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=91.92 E-value=0.24 Score=44.17 Aligned_cols=112 Identities=19% Similarity=0.173 Sum_probs=67.4
Q ss_pred EEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCe-----Ee------cCc-----ccccc------HHHHHhccCC
Q 030169 61 VICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGT-----EH------LGL-----PVFNS------VAEAKAETKA 117 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~-----~i------~Gv-----PVy~S------v~ea~~~~~~ 117 (182)
|+|.|++|..|+.+++.+.+++ -+|+ .+|...... +. ..+ |+..+ +.++.++++|
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~li--l~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~p 78 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLI--LFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKP 78 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEE--EEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEE--EeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCC
Confidence 6899999999999999999998 4566 555442110 01 012 33334 5666677789
Q ss_pred cEEEEeeC-----------h-------HHHHHHHHHHHHcCCCEEEEeCCC----------CCHHHHHHHHHHhcccc--
Q 030169 118 NASVIYVP-----------P-------PFAAAAIMEAMEAELDLVVCITEG----------IPQHDMVINFTRVNILL-- 167 (182)
Q Consensus 118 DvaVdfVp-----------p-------~av~~a~~eAie~GIk~VV~iTeG----------~~~eD~~~l~~~ak~ip-- 167 (182)
|+++=+.- . -.++.+++.|+++|++.+|+++|. .+..-++++...+.+-.
T Consensus 79 diVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~PtnvmGatKrlaE~l~~~~~~~~~~ 158 (293)
T PF02719_consen 79 DIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVMGATKRLAEKLVQAANQYSGN 158 (293)
T ss_dssp SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHHHHHHHHHHHHHHHHCCTSSS
T ss_pred CEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHHHHHHHHHHHHHHHHhhhCCC
Confidence 99876531 1 234567889999999999998865 44455555555554444
Q ss_pred -------hhcchhh
Q 030169 168 -------VAFLNFI 174 (182)
Q Consensus 168 -------v~~~~~~ 174 (182)
|=|||.+
T Consensus 159 ~~t~f~~VRFGNVl 172 (293)
T PF02719_consen 159 SDTKFSSVRFGNVL 172 (293)
T ss_dssp S--EEEEEEE-EET
T ss_pred CCcEEEEEEeccee
Confidence 6666654
No 405
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.91 E-value=0.2 Score=45.25 Aligned_cols=81 Identities=17% Similarity=0.300 Sum_probs=50.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe------E--ecCcccc-cc-HHHHHhccCCcEEEEeeChH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT------E--HLGLPVF-NS-VAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~------~--i~GvPVy-~S-v~ea~~~~~~DvaVdfVpp~ 127 (182)
..+|+|+|+ |+.|..+++.+.+.|.+|+ ++|+..... + -.|+.++ .+ ..+... ++|++|......
T Consensus 5 ~k~v~iiG~-g~~G~~~A~~l~~~G~~V~--~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~d~vv~~~g~~ 79 (450)
T PRK14106 5 GKKVLVVGA-GVSGLALAKFLKKLGAKVI--LTDEKEEDQLKEALEELGELGIELVLGEYPEEFLE--GVDLVVVSPGVP 79 (450)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE--EEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhh--cCCEEEECCCCC
Confidence 477999998 7799999999999999888 777753110 0 0133332 22 222223 578877765544
Q ss_pred HHHHHHHHHHHcCCCE
Q 030169 128 FAAAAIMEAMEAELDL 143 (182)
Q Consensus 128 av~~a~~eAie~GIk~ 143 (182)
.....+.+|.+.||+.
T Consensus 80 ~~~~~~~~a~~~~i~~ 95 (450)
T PRK14106 80 LDSPPVVQAHKKGIEV 95 (450)
T ss_pred CCCHHHHHHHHCCCcE
Confidence 4445666666666654
No 406
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=91.88 E-value=1 Score=36.95 Aligned_cols=83 Identities=19% Similarity=0.113 Sum_probs=54.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc---cCC-cEEEEeeChHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE---TKA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~---~~~-DvaVdfVpp~av~~a~~ 134 (182)
.+|+|.|++|..|+.+++.+.+.|.+++ .++..... ... ..+++... .++ -+..|...++.+.++++
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~~vi--~~~r~~~~--~~~-----~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 73 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGYRVA--VADINSEK--AAN-----VAQEINAEYGEGMAYGFGADATSEQSVLALSR 73 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEE--EEECCHHH--HHH-----HHHHHHHhcCCceeEEEEccCCCHHHHHHHHH
Confidence 4699999999999999999999998888 55543311 100 11111111 112 24457778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|. ..|.
T Consensus 74 ~~~~~~~~id~vv~-~ag~ 91 (259)
T PRK12384 74 GVDEIFGRVDLLVY-NAGI 91 (259)
T ss_pred HHHHHcCCCCEEEE-CCCc
Confidence 87764 5777777 5554
No 407
>PRK07578 short chain dehydrogenase; Provisional
Probab=91.85 E-value=1.3 Score=34.99 Aligned_cols=32 Identities=9% Similarity=0.212 Sum_probs=26.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK 93 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~ 93 (182)
++++|.|++|.+|..+++.+.+. .+++ ++++.
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~vi--~~~r~ 32 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HEVI--TAGRS 32 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-CcEE--EEecC
Confidence 36999999999999999998877 7777 55554
No 408
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.84 E-value=0.32 Score=43.90 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=48.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC--e---E--ecCccccc--cHHHHHhccCCcEEEEeeC-hH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG--T---E--HLGLPVFN--SVAEAKAETKANASVIYVP-PP 127 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G--~---~--i~GvPVy~--Sv~ea~~~~~~DvaVdfVp-p~ 127 (182)
..+|+|.|+ |+.|...++.+.+.|.+|+ +.|..... . + ..|+.++. ...+.+.. .+|++|. +| -.
T Consensus 5 ~k~v~v~G~-g~~G~s~a~~l~~~G~~V~--~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~d~vV~-s~gi~ 79 (447)
T PRK02472 5 NKKVLVLGL-AKSGYAAAKLLHKLGANVT--VNDGKPFSENPEAQELLEEGIKVICGSHPLELLDE-DFDLMVK-NPGIP 79 (447)
T ss_pred CCEEEEEee-CHHHHHHHHHHHHCCCEEE--EEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcC-cCCEEEE-CCCCC
Confidence 467999999 6699999999999999888 55543211 0 0 12566552 23343331 3775443 33 11
Q ss_pred HHHHHHHHHHHcCCCEE
Q 030169 128 FAAAAIMEAMEAELDLV 144 (182)
Q Consensus 128 av~~a~~eAie~GIk~V 144 (182)
.....+++|.+.|++.+
T Consensus 80 ~~~~~~~~a~~~~i~v~ 96 (447)
T PRK02472 80 YTNPMVEKALEKGIPII 96 (447)
T ss_pred CCCHHHHHHHHCCCcEE
Confidence 12345677777777654
No 409
>PRK09072 short chain dehydrogenase; Provisional
Probab=91.84 E-value=0.69 Score=38.16 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=52.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
..+++|.|++|.+|..+++.+.+.|.+|+ .++..... .. .-..+.....+.. +..|...++.+.++.+..
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~~V~--~~~r~~~~--~~-----~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~ 75 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGARLL--LVGRNAEK--LE-----ALAARLPYPGRHRWVVADLTSEAGREAVLARA 75 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEECCHHH--HH-----HHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 45799999999999999999999998877 55543211 10 0011110000111 245677888877777766
Q ss_pred HHc-CCCEEEEeCCCCC
Q 030169 137 MEA-ELDLVVCITEGIP 152 (182)
Q Consensus 137 ie~-GIk~VV~iTeG~~ 152 (182)
.+. ++..+|. ..|..
T Consensus 76 ~~~~~id~lv~-~ag~~ 91 (263)
T PRK09072 76 REMGGINVLIN-NAGVN 91 (263)
T ss_pred HhcCCCCEEEE-CCCCC
Confidence 543 5666776 66653
No 410
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=91.84 E-value=0.79 Score=43.89 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=27.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHh--CCceEEeecc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEY--GTKMVVGGVT 91 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~--g~~IV~AgVd 91 (182)
.+||+|.|++|-.|+.+++.+.+. +.+|+ +++
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~--~~d 39 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIV--VLD 39 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEE--EEe
Confidence 478999999999999999999876 57888 444
No 411
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=91.81 E-value=0.17 Score=47.74 Aligned_cols=112 Identities=14% Similarity=0.186 Sum_probs=68.6
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe------------EecC-------------ccccccHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT------------EHLG-------------LPVFNSVAEA 111 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~------------~i~G-------------vPVy~Sv~ea 111 (182)
+-.+|.|+|+ |.||..++..+...|.++++-..++..... ...| +..-.++++
T Consensus 6 ~i~~V~VIGa-G~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~- 83 (507)
T PRK08268 6 SIATVAVIGA-GAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD- 83 (507)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-
Confidence 4467999999 999999999999989888822333332111 0012 556677766
Q ss_pred HhccCCcEEEEeeChHHHHHHHH-HHHHcCCC--EEEE-eCCCCCHHHHHHHHHHhc-ccchhcch
Q 030169 112 KAETKANASVIYVPPPFAAAAIM-EAMEAELD--LVVC-ITEGIPQHDMVINFTRVN-ILLVAFLN 172 (182)
Q Consensus 112 ~~~~~~DvaVdfVpp~av~~a~~-eAie~GIk--~VV~-iTeG~~~eD~~~l~~~ak-~ipv~~~~ 172 (182)
.. ++|++|-.+|.+...+... .-++.-.+ .|++ -|+.++..++..-....+ .+-+-|.|
T Consensus 84 ~~--~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~ 147 (507)
T PRK08268 84 LA--DCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFN 147 (507)
T ss_pred hC--CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecC
Confidence 34 7999999999877654432 33444332 3442 288899875443222211 24555555
No 412
>PLN02700 homoserine dehydrogenase family protein
Probab=91.79 E-value=0.43 Score=43.94 Aligned_cols=48 Identities=10% Similarity=-0.061 Sum_probs=35.7
Q ss_pred cCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHh
Q 030169 115 TKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 115 ~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~a 163 (182)
...+++||.++.....+...+++++|+++|-+ -.+.-..+..++.+++
T Consensus 108 ~~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTa-NK~~~a~~~~~~~~la 155 (377)
T PLN02700 108 STGLVVVDCSASMETIGALNEAVDLGCCIVLA-NKKPLTSTLEDYDKLA 155 (377)
T ss_pred cCCCEEEECCCChHHHHHHHHHHHCCCeEEcC-CchHhccCHHHHHHHH
Confidence 34699999999988899999999999999855 4333344444455554
No 413
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=91.79 E-value=0.85 Score=36.99 Aligned_cols=84 Identities=18% Similarity=0.154 Sum_probs=53.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+++ ....... . .. ..+.+.+.+...+ +-.|+..++.+.++++
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~~v~-~~~~~~~-~-~~------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGAKVV-INYNSSK-E-AA------ENLVNELGKEGHDVYAVQADVSKVEDANRLVE 76 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEE-EEcCCcH-H-HH------HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 46799999999999999999999998887 4332221 1 00 1111112211222 2356677788888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. .+..|+. ..|+
T Consensus 77 ~~~~~~~~id~vi~-~ag~ 94 (247)
T PRK12935 77 EAVNHFGKVDILVN-NAGI 94 (247)
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 87765 3677776 5665
No 414
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=91.78 E-value=0.93 Score=37.39 Aligned_cols=80 Identities=15% Similarity=0.122 Sum_probs=54.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|-.|+.+++.+.+.|.+|+ .++..... .+++.++. ++ -+..|...++.+..+++
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~-----------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGARVA--VLERSAEK-----------LASLRQRFGDHVLVVEGDVTSYADNQRAVD 72 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE--EEeCCHHH-----------HHHHHHHhCCcceEEEccCCCHHHHHHHHH
Confidence 45799999999999999999999999888 44443211 12222211 11 23456777888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. .+..+|. ..|+
T Consensus 73 ~~~~~~g~id~li~-~ag~ 90 (263)
T PRK06200 73 QTVDAFGKLDCFVG-NAGI 90 (263)
T ss_pred HHHHhcCCCCEEEE-CCCC
Confidence 87765 5777777 6664
No 415
>PRK07035 short chain dehydrogenase; Provisional
Probab=91.78 E-value=1 Score=36.73 Aligned_cols=81 Identities=16% Similarity=0.091 Sum_probs=53.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-CC-cEEEEeeChHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~-DvaVdfVpp~av~~a~~eA 136 (182)
.+|+|.|++|..|..+++.+.+.|.+++ .++..... .. ...+++.+.. ++ -+-+|....+.+.++++++
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi--~~~r~~~~--~~-----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 79 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVI--VSSRKLDG--CQ-----AVADAIVAAGGKAEALACHIGEMEQIDALFAHI 79 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 5699999999999999999999998888 55554311 11 1122222110 11 2445677788888888887
Q ss_pred HHc--CCCEEEEeC
Q 030169 137 MEA--ELDLVVCIT 148 (182)
Q Consensus 137 ie~--GIk~VV~iT 148 (182)
.+. .+..+|+..
T Consensus 80 ~~~~~~id~li~~a 93 (252)
T PRK07035 80 RERHGRLDILVNNA 93 (252)
T ss_pred HHHcCCCCEEEECC
Confidence 764 478887634
No 416
>PRK07102 short chain dehydrogenase; Provisional
Probab=91.77 E-value=0.79 Score=37.27 Aligned_cols=82 Identities=11% Similarity=0.057 Sum_probs=49.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~e 135 (182)
++++|.|++|..|+.+++.+.+.|.+++ .++..... .. ...++........ +-.|...++.+.+.+++
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi--~~~r~~~~--~~-----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 72 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLY--LAARDVER--LE-----RLADDLRARGAVAVSTHELDILDTASHAAFLDS 72 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEE--EEeCCHHH--HH-----HHHHHHHHhcCCeEEEEecCCCChHHHHHHHHH
Confidence 4699999999999999999999998877 44444321 10 0111111110111 12345566677777776
Q ss_pred HHHcCCCEEEEeCCCC
Q 030169 136 AMEAELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~GIk~VV~iTeG~ 151 (182)
+.+ .+..+++ ..|.
T Consensus 73 ~~~-~~d~vv~-~ag~ 86 (243)
T PRK07102 73 LPA-LPDIVLI-AVGT 86 (243)
T ss_pred Hhh-cCCEEEE-CCcC
Confidence 654 4677776 5553
No 417
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=91.72 E-value=1.5 Score=35.50 Aligned_cols=76 Identities=17% Similarity=0.182 Sum_probs=50.5
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eA 136 (182)
+++++|.|++|..|+.+++.+.+.|.+++ .++... ... ....+ =+-.|+..++.+.+++++.
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~G~~v~--~~~~~~-------------~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 70 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEAGAKVI--GFDQAF-------------LTQ--EDYPFATFVLDVSDAAAVAQVCQRL 70 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE--EEecch-------------hhh--cCCceEEEEecCCCHHHHHHHHHHH
Confidence 46799999999999999999999998888 443322 000 00011 1335667788888887777
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. .+..++. ..|.
T Consensus 71 ~~~~~~id~vi~-~ag~ 86 (252)
T PRK08220 71 LAETGPLDVLVN-AAGI 86 (252)
T ss_pred HHHcCCCCEEEE-CCCc
Confidence 665 3667776 4444
No 418
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=91.69 E-value=0.53 Score=44.19 Aligned_cols=96 Identities=13% Similarity=0.034 Sum_probs=62.9
Q ss_pred CchhhhHHHHHhCCceEEeeccCCCCCeE--e------cCccccccHHHHHhcc-CCcEEEEeeChHHHH-HHHHHHHHc
Q 030169 70 NGTFHTEQAIEYGTKMVVGGVTPKKGGTE--H------LGLPVFNSVAEAKAET-KANASVIYVPPPFAA-AAIMEAMEA 139 (182)
Q Consensus 70 mG~~v~k~~~~~g~~IV~AgVdp~~~G~~--i------~GvPVy~Sv~ea~~~~-~~DvaVdfVpp~av~-~a~~eAie~ 139 (182)
||+.++.++.+.|++++ ..|......+ . .|+..++|++|+.+.. .+|++++.+|...+. ++++..+..
T Consensus 1 MG~~mA~nL~~~G~~V~--v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~ 78 (459)
T PRK09287 1 MGKNLALNIASHGYTVA--VYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPL 78 (459)
T ss_pred CcHHHHHHHHhCCCeEE--EECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhc
Confidence 89999999999999988 5555432111 1 2488899999998854 489999999987554 444554443
Q ss_pred -CC-CEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 140 -EL-DLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 140 -GI-k~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
.. ..||- +.....+|..++.+..++-.+
T Consensus 79 l~~GdiiID-~gn~~~~~t~~~~~~l~~~Gi 108 (459)
T PRK09287 79 LEKGDIIID-GGNSNYKDTIRREKELAEKGI 108 (459)
T ss_pred CCCCCEEEE-CCCCCHHHHHHHHHHHHhcCC
Confidence 11 23444 555566666666665554443
No 419
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=91.66 E-value=1.4 Score=35.92 Aligned_cols=85 Identities=14% Similarity=0.088 Sum_probs=51.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCcEE-EEe--eChHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KANAS-VIY--VPPPFAAA 131 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~Dva-Vdf--Vpp~av~~ 131 (182)
+..+|+|.|++|.+|..+++.+.+.|.+++ .++..... .. .-.+++.+.. .+.+. .|. ...+.+.+
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~~Vi--~~~r~~~~--~~-----~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 81 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGATVI--LLGRTEEK--LE-----AVYDEIEAAGGPQPAIIPLDLLTATPQNYQQ 81 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCcEE--EEeCCHHH--HH-----HHHHHHHhcCCCCceEEEecccCCCHHHHHH
Confidence 567799999999999999999999898888 55544311 10 1112221111 11111 222 25566777
Q ss_pred HHHHHHHc--CCCEEEEeCCCC
Q 030169 132 AIMEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 132 a~~eAie~--GIk~VV~iTeG~ 151 (182)
+++++.+. .+..||. ..|.
T Consensus 82 ~~~~~~~~~~~id~vi~-~Ag~ 102 (247)
T PRK08945 82 LADTIEEQFGRLDGVLH-NAGL 102 (247)
T ss_pred HHHHHHHHhCCCCEEEE-CCcc
Confidence 77776665 5777777 5554
No 420
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=91.64 E-value=1.1 Score=42.44 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=28.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeecc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVT 91 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVd 91 (182)
..+|+|||+ |+.|+..++.+.+.|.+|| +--|
T Consensus 237 Gk~VaVqG~-GnVg~~aa~~L~e~GakVV-avSD 268 (454)
T PTZ00079 237 GKTVVVSGS-GNVAQYAVEKLLQLGAKVL-TMSD 268 (454)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEEc
Confidence 468999999 9999999999999999999 6333
No 421
>PRK08628 short chain dehydrogenase; Provisional
Probab=91.63 E-value=1.7 Score=35.57 Aligned_cols=82 Identities=18% Similarity=0.099 Sum_probs=53.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCC-cEEEEeeChHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKA-NASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~-DvaVdfVpp~av~~a~~eA 136 (182)
.+++|.|++|..|+.+++.+.+.|.+++ .++..... .. ..+++.+. .++ -...|+..++....+++++
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~--~~~r~~~~-----~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPV--IFGRSAPD-----DE---FAEELRALQPRAEFVQVDLTDDAQCRDAVEQT 77 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEE--EEcCChhh-----HH---HHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 4699999999999999999999998887 34333211 11 12222111 011 2445677778788877777
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..++. ..|.
T Consensus 78 ~~~~~~id~vi~-~ag~ 93 (258)
T PRK08628 78 VAKFGRIDGLVN-NAGV 93 (258)
T ss_pred HHhcCCCCEEEE-CCcc
Confidence 665 5777777 6564
No 422
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=91.62 E-value=0.76 Score=39.52 Aligned_cols=84 Identities=12% Similarity=0.100 Sum_probs=53.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHh-ccCCc-EEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKA-ETKAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~-~~~~D-vaVdfVpp~av~~a~~e 135 (182)
..+++|.|++|-.|..+++.+.+.|.+|+ .++..... .. ...+++.. ..++. +..|...++.+.+++++
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~~V~--~~~r~~~~--~~-----~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~ 76 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGWHVI--MACRNLKK--AE-----AAAQELGIPPDSYTIIHIDLGDLDSVRRFVDD 76 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCCEEE--EEECCHHH--HH-----HHHHHhhccCCceEEEEecCCCHHHHHHHHHH
Confidence 45699999999999999999999998888 34432211 00 00111111 01122 34678888888888888
Q ss_pred HHHcC--CCEEEEeCCCC
Q 030169 136 AMEAE--LDLVVCITEGI 151 (182)
Q Consensus 136 Aie~G--Ik~VV~iTeG~ 151 (182)
..+.+ +..+|+ ..|+
T Consensus 77 ~~~~~~~iD~li~-nAg~ 93 (322)
T PRK07453 77 FRALGKPLDALVC-NAAV 93 (322)
T ss_pred HHHhCCCccEEEE-CCcc
Confidence 66553 788887 5553
No 423
>PRK07069 short chain dehydrogenase; Validated
Probab=91.60 E-value=2.4 Score=34.26 Aligned_cols=83 Identities=20% Similarity=0.172 Sum_probs=53.4
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC----cEEEEeeChHHHHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA----NASVIYVPPPFAAAAIME 135 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~----DvaVdfVpp~av~~a~~e 135 (182)
+|+|.|++|..|..+++.+.+.|.+++ .++..... .... ..+++.+.... .+..|+..++...+++++
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~--~~~r~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVF--LTDINDAA-GLDA-----FAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQ 72 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEE--EEeCCcch-HHHH-----HHHHHHhcCCCceEEEEEeecCCHHHHHHHHHH
Confidence 489999999999999999999998888 44433111 0110 01121111111 245588888988888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.++ ++..+|. ..|+
T Consensus 73 ~~~~~~~id~vi~-~ag~ 89 (251)
T PRK07069 73 AADAMGGLSVLVN-NAGV 89 (251)
T ss_pred HHHHcCCccEEEE-CCCc
Confidence 8764 5777776 5554
No 424
>PRK07074 short chain dehydrogenase; Provisional
Probab=91.58 E-value=0.85 Score=37.30 Aligned_cols=82 Identities=16% Similarity=0.241 Sum_probs=53.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eAi 137 (182)
.+++|.|++|..|+.+++.+.+.|.+++ .++..... .. .+.+-+.+.+++ .-.|...++.+..+++++.
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~--~~~r~~~~--~~------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVL--ALDIDAAA--LA------AFADALGDARFVPVACDLTDAASLAAALANAA 72 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEE--EEeCCHHH--HH------HHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 4699999999999999999999998888 44443211 00 011111111333 2567778888888887776
Q ss_pred Hc--CCCEEEEeCCCC
Q 030169 138 EA--ELDLVVCITEGI 151 (182)
Q Consensus 138 e~--GIk~VV~iTeG~ 151 (182)
+. ++..|+. ..|.
T Consensus 73 ~~~~~~d~vi~-~ag~ 87 (257)
T PRK07074 73 AERGPVDVLVA-NAGA 87 (257)
T ss_pred HHcCCCCEEEE-CCCC
Confidence 64 5777777 5554
No 425
>PRK08643 acetoin reductase; Validated
Probab=91.57 E-value=0.44 Score=38.99 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=54.5
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCCc-EEEEeeChHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~D-vaVdfVpp~av~~a~~eA 136 (182)
..++|.|++|..|..+++.+.+.|.+++ .++..... .. .. .+++.+. .++. ...|...++.+.++++++
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~--~~~r~~~~--~~--~~---~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 73 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVA--IVDYNEET--AQ--AA---ADKLSKDGGKAIAVKADVSDRDQVFAAVRQV 73 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEE--EEeCCHHH--HH--HH---HHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 4688999999999999999999998888 45433211 00 01 1111110 0111 345788899999988888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|. ..|+
T Consensus 74 ~~~~~~id~vi~-~ag~ 89 (256)
T PRK08643 74 VDTFGDLNVVVN-NAGV 89 (256)
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 765 6788877 6665
No 426
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=91.54 E-value=0.95 Score=36.94 Aligned_cols=64 Identities=16% Similarity=0.206 Sum_probs=40.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccC-CCC-----CeEe--cCccccccHHHHHhccCCcEEEEeeC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTP-KKG-----GTEH--LGLPVFNSVAEAKAETKANASVIYVP 125 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp-~~~-----G~~i--~GvPVy~Sv~ea~~~~~~DvaVdfVp 125 (182)
++|+|.|+||..|+.+++.+++.|.+++ +.+-. .+. +-++ .++---.++..+.+ +.|..++.++
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~-~~~r~~~~~~~~~~~v~~~~~d~~~~~~l~~a~~--G~~~~~~i~~ 72 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVR-AAVRNPEAAAALAGGVEVVLGDLRDPKSLVAGAK--GVDGVLLISG 72 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEE-EEEeCHHHHHhhcCCcEEEEeccCCHhHHHHHhc--cccEEEEEec
Confidence 4799999999999999999998898888 54322 111 1011 11222223444444 7787777777
No 427
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=91.53 E-value=1.2 Score=37.56 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=25.8
Q ss_pred eEEEEccCCCCchhhhHHHHHhC--CceEEeec
Q 030169 60 RVICQGITGKNGTFHTEQAIEYG--TKMVVGGV 90 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g--~~IV~AgV 90 (182)
+|+|.|++|-.|+.+++.+.+.| .+|+ +.+
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~-~l~ 32 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVI-CLV 32 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEE-EEE
Confidence 48999999999999999999887 6688 554
No 428
>PRK08265 short chain dehydrogenase; Provisional
Probab=91.52 E-value=1.6 Score=36.14 Aligned_cols=80 Identities=14% Similarity=0.083 Sum_probs=53.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|+.+++.+.+.|.+|+ .++..... .+++.++. ++ =+..|...++.+.++++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~-----------~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 72 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVA--IVDIDADN-----------GAAVAASLGERARFIATDITDDAAIERAVA 72 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE--EEeCCHHH-----------HHHHHHHhCCeeEEEEecCCCHHHHHHHHH
Confidence 45799999999999999999999999888 44443211 12222211 11 13457778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. .+..+|. ..|+
T Consensus 73 ~~~~~~g~id~lv~-~ag~ 90 (261)
T PRK08265 73 TVVARFGRVDILVN-LACT 90 (261)
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 87764 5777776 5453
No 429
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=91.52 E-value=0.88 Score=37.63 Aligned_cols=84 Identities=10% Similarity=0.029 Sum_probs=52.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC---cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA---NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~---DvaVdfVpp~av~~a~~ 134 (182)
..+++|.|+++..|+.+++.+.+.|.+++ .+...... ... ...+++...... -+.+|++.++.+.++++
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~~v~--~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 79 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGVNIA--FTYNSNVE-EAN-----KIAEDLEQKYGIKAKAYPLNILEPETYKELFK 79 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE--EEcCCCHH-HHH-----HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 35689999999999999999999999887 33322100 000 011121111122 23457788899988888
Q ss_pred HHHHc--CCCEEEEeCCC
Q 030169 135 EAMEA--ELDLVVCITEG 150 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG 150 (182)
+..+. .+..+|+ ..|
T Consensus 80 ~~~~~~g~id~lv~-nAg 96 (260)
T PRK08416 80 KIDEDFDRVDFFIS-NAI 96 (260)
T ss_pred HHHHhcCCccEEEE-Ccc
Confidence 87764 5677776 444
No 430
>PRK06114 short chain dehydrogenase; Provisional
Probab=91.50 E-value=2 Score=35.31 Aligned_cols=84 Identities=15% Similarity=0.108 Sum_probs=54.7
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~ 134 (182)
...++|.|++|-.|+.+++.+.+.|.+++ .++..... -.....+.+++. ++ -+-.|...++.+.++++
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~~v~--~~~r~~~~-------~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~ 78 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGADVA--LFDLRTDD-------GLAETAEHIEAAGRRAIQIAADVTSKADLRAAVA 78 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEeCCcch-------HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 45789999999999999999999999888 44443211 011111112211 22 23457778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. .+..+|. ..|+
T Consensus 79 ~~~~~~g~id~li~-~ag~ 96 (254)
T PRK06114 79 RTEAELGALTLAVN-AAGI 96 (254)
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 87764 5777776 6665
No 431
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.37 E-value=0.85 Score=40.06 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=27.2
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCC
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPK 93 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~ 93 (182)
.+.+|+|+|+ |-.|..+++.+...| .+|. -+|+.
T Consensus 29 ~~s~VlVvG~-GGVGs~vae~Lar~GVg~it--LiD~D 63 (268)
T PRK15116 29 ADAHICVVGI-GGVGSWAAEALARTGIGAIT--LIDMD 63 (268)
T ss_pred cCCCEEEECc-CHHHHHHHHHHHHcCCCEEE--EEeCC
Confidence 3578999999 999999999999988 5555 55544
No 432
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.36 E-value=0.67 Score=38.84 Aligned_cols=33 Identities=18% Similarity=0.112 Sum_probs=26.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPK 93 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~ 93 (182)
..+|+|+|+ |.+|..+++.+...| .+|. -+|..
T Consensus 28 ~~~V~ViG~-GglGs~ia~~La~~Gvg~i~--lvD~D 61 (212)
T PRK08644 28 KAKVGIAGA-GGLGSNIAVALARSGVGNLK--LVDFD 61 (212)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCCCeEE--EEeCC
Confidence 467999999 999999999999888 4455 55555
No 433
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=91.34 E-value=0.99 Score=38.28 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=46.7
Q ss_pred CccccccHHHHHhccCCcEEEEeeChHHHHHHHHHHHH--cCCCEEEEeCCCCCHHHHHHHHH
Q 030169 101 GLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME--AELDLVVCITEGIPQHDMVINFT 161 (182)
Q Consensus 101 GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eAie--~GIk~VV~iTeG~~~eD~~~l~~ 161 (182)
|+.++++..++.+ ++|++++.|+|....+++.+.-. .+=+.||-++.|++.+++.++..
T Consensus 30 g~~~~~~~~e~~~--~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l~~~~~ 90 (245)
T TIGR00112 30 GIVASSDAQEAVK--EADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKLSQLLG 90 (245)
T ss_pred CcEEeCChHHHHh--hCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHHHHHcC
Confidence 3445667778777 78999999999999998876653 23368888899999999998764
No 434
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.34 E-value=0.4 Score=39.08 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=46.6
Q ss_pred CceEEEEccCCCC-chhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKN-GTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkm-G~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~eA 136 (182)
..+|+|+|+ |.| |..+++.+.+.|.+++ .++.. ++.+.+.+. ++|++|-.++.... +-.+.
T Consensus 44 gk~vlViG~-G~~~G~~~a~~L~~~g~~V~--v~~r~-----------~~~l~~~l~--~aDiVIsat~~~~i--i~~~~ 105 (168)
T cd01080 44 GKKVVVVGR-SNIVGKPLAALLLNRNATVT--VCHSK-----------TKNLKEHTK--QADIVIVAVGKPGL--VKGDM 105 (168)
T ss_pred CCEEEEECC-cHHHHHHHHHHHhhCCCEEE--EEECC-----------chhHHHHHh--hCCEEEEcCCCCce--ecHHH
Confidence 578999999 887 8889999999997766 44443 245666676 79999999987552 33344
Q ss_pred HHcC
Q 030169 137 MEAE 140 (182)
Q Consensus 137 ie~G 140 (182)
++.+
T Consensus 106 ~~~~ 109 (168)
T cd01080 106 VKPG 109 (168)
T ss_pred ccCC
Confidence 4443
No 435
>PRK07411 hypothetical protein; Validated
Probab=91.32 E-value=0.75 Score=42.02 Aligned_cols=36 Identities=19% Similarity=0.140 Sum_probs=28.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGG 96 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G 96 (182)
+.||+|+|+ |-.|..+++++...| .+|. -+|+....
T Consensus 38 ~~~VlivG~-GGlG~~va~~La~~Gvg~l~--lvD~D~ve 74 (390)
T PRK07411 38 AASVLCIGT-GGLGSPLLLYLAAAGIGRIG--IVDFDVVD 74 (390)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCCCEEE--EECCCEec
Confidence 478999999 999999999999999 4444 66665533
No 436
>PRK07877 hypothetical protein; Provisional
Probab=91.31 E-value=0.55 Score=46.60 Aligned_cols=106 Identities=14% Similarity=0.080 Sum_probs=55.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC--CceEEeeccCCCCCeEe-c---------CccccccHHHHHhccCCcEEEEeeC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG--TKMVVGGVTPKKGGTEH-L---------GLPVFNSVAEAKAETKANASVIYVP 125 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g--~~IV~AgVdp~~~G~~i-~---------GvPVy~Sv~ea~~~~~~DvaVdfVp 125 (182)
+.||+|+|+ | .|+.++..+...| ++|. -||........ + |.|=-...++.+.+.++++-|...+
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~--lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGELR--LADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCeEE--EEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 477999999 8 9999999988887 3666 55554322211 1 1111111222233334555555555
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhcccch
Q 030169 126 PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 168 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l~~~ak~ipv 168 (182)
.....+.+++.++ +...|+..+..+..+.+..-....+.+|+
T Consensus 183 ~~i~~~n~~~~l~-~~DlVvD~~D~~~~R~~ln~~a~~~~iP~ 224 (722)
T PRK07877 183 DGLTEDNVDAFLD-GLDVVVEECDSLDVKVLLREAARARRIPV 224 (722)
T ss_pred ccCCHHHHHHHhc-CCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 4444444444432 35555555555544444433334444544
No 437
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=91.29 E-value=1.4 Score=36.66 Aligned_cols=83 Identities=12% Similarity=0.098 Sum_probs=53.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
...++|.|++|..|+.+++.+.+.|.+++ .++..... . ..+.+-+++.+.+ +-.|...++.+.++++
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~~V~--~~~r~~~~--~------~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 79 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGAKVA--ILDRNQEK--A------EAVVAEIKAAGGEALAVKADVLDKESLEQARQ 79 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE--EEeCCHHH--H------HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 45689999999999999999999998887 45543211 1 1111112211122 2456677788888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|. ..|.
T Consensus 80 ~~~~~~g~id~li~-~ag~ 97 (278)
T PRK08277 80 QILEDFGPCDILIN-GAGG 97 (278)
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 77764 6788887 5553
No 438
>PRK06482 short chain dehydrogenase; Provisional
Probab=91.27 E-value=1.8 Score=35.91 Aligned_cols=79 Identities=18% Similarity=0.223 Sum_probs=52.0
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~e 135 (182)
++++|.|++|..|+.+++.+.+.|.+++ .+..... .++++.+.. ++. +..|...++...+++.+
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~--~~~r~~~-----------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 69 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVA--ATVRRPD-----------ALDDLKARYGDRLWVLQLDVTDSAAVRAVVDR 69 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEE--EEeCCHH-----------HHHHHHHhccCceEEEEccCCCHHHHHHHHHH
Confidence 4699999999999999999999998877 3333220 122222211 121 24677788888888877
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. ++..||. ..|.
T Consensus 70 ~~~~~~~id~vi~-~ag~ 86 (276)
T PRK06482 70 AFAALGRIDVVVS-NAGY 86 (276)
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 7664 4777777 5554
No 439
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=91.25 E-value=1.3 Score=34.76 Aligned_cols=79 Identities=16% Similarity=0.090 Sum_probs=48.0
Q ss_pred chhhhHHHH-HhCCceEEeeccCCCCCeEecCccccccHHHHH---hccCCcEEEEee----ChHHHHHHHHHHHHcCCC
Q 030169 71 GTFHTEQAI-EYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAK---AETKANASVIYV----PPPFAAAAIMEAMEAELD 142 (182)
Q Consensus 71 G~~v~k~~~-~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~---~~~~~DvaVdfV----pp~av~~a~~eAie~GIk 142 (182)
|..++..++ ..|++++ ..| ++.+.+++. .+.++|++++.+ ....+.++++++-+.|.+
T Consensus 18 g~~iv~~~l~~~GfeVi-------~lg-------~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~ 83 (132)
T TIGR00640 18 GAKVIATAYADLGFDVD-------VGP-------LFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRP 83 (132)
T ss_pred HHHHHHHHHHhCCcEEE-------ECC-------CCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCC
Confidence 344455444 6679888 323 444544443 245899998876 445666777777677763
Q ss_pred EE-EEeCCCCCHHHHHHHHHHh
Q 030169 143 LV-VCITEGIPQHDMVINFTRV 163 (182)
Q Consensus 143 ~V-V~iTeG~~~eD~~~l~~~a 163 (182)
.+ |.+.-.+|.+|..++.++-
T Consensus 84 ~i~vivGG~~~~~~~~~l~~~G 105 (132)
T TIGR00640 84 DILVVVGGVIPPQDFDELKEMG 105 (132)
T ss_pred CCEEEEeCCCChHhHHHHHHCC
Confidence 32 3323347888888877754
No 440
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=91.23 E-value=1.6 Score=35.32 Aligned_cols=82 Identities=17% Similarity=0.150 Sum_probs=52.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~e 135 (182)
.+++|.|++|..|+.+++.+.+.|.+++ .++..... . ..+.+..+.. ++. +..|+..++.+.+++.+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~~v~--~~~r~~~~--~------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGANVV--VNDLGEAG--A------EAAAKVATDAGGSVIYLVADVTKEDEIADMIAA 71 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCCEEE--EEeCCHHH--H------HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHH
Confidence 3699999999999999999999998888 55554311 0 0111111111 232 23577888888887777
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
..+. ++..|+. ..|.
T Consensus 72 ~~~~~~~~d~vi~-~a~~ 88 (255)
T TIGR01963 72 AAAEFGGLDILVN-NAGI 88 (255)
T ss_pred HHHhcCCCCEEEE-CCCC
Confidence 7653 5777776 4443
No 441
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.21 E-value=1.1 Score=40.26 Aligned_cols=89 Identities=17% Similarity=0.149 Sum_probs=54.7
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeec--cCCCCCe---EecCcccc-cc---HHHHHhc--cCCcEEEEeeC
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGV--TPKKGGT---EHLGLPVF-NS---VAEAKAE--TKANASVIYVP 125 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgV--dp~~~G~---~i~GvPVy-~S---v~ea~~~--~~~DvaVdfVp 125 (182)
+..+++|+|+ |+.|+.+++.+.+.|.+++ .+ +|..... +..+++++ .+ .+.+.+. .++|+++..++
T Consensus 230 ~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~--vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~ 306 (453)
T PRK09496 230 PVKRVMIVGG-GNIGYYLAKLLEKEGYSVK--LIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTN 306 (453)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEE--EEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCC
Confidence 3577999999 9999999999999888887 55 4432110 11245543 22 2222121 27898888877
Q ss_pred hHHHH-HHHHHHHHcCCCEEEEeC
Q 030169 126 PPFAA-AAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 126 p~av~-~a~~eAie~GIk~VV~iT 148 (182)
.+... .++..|.+.+.+.|+..+
T Consensus 307 ~~~~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 307 DDEANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred CcHHHHHHHHHHHHhCCCeEEEEE
Confidence 54333 334445666777666533
No 442
>PRK07478 short chain dehydrogenase; Provisional
Probab=91.16 E-value=0.98 Score=36.97 Aligned_cols=83 Identities=19% Similarity=0.142 Sum_probs=54.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|..|..+++.+.+.|.+++ .++..... .. ...++ +++...+ +..|...++.+..+++
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~~v~--~~~r~~~~--~~-----~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGAKVV--VGARRQAE--LD-----QLVAE-IRAEGGEAVALAGDVRDEAYAKALVA 75 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHH-HHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 35699999999999999999999998888 44433211 10 01112 1111112 3357788888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
+..+. ++..+|. ..|+
T Consensus 76 ~~~~~~~~id~li~-~ag~ 93 (254)
T PRK07478 76 LAVERFGGLDIAFN-NAGT 93 (254)
T ss_pred HHHHhcCCCCEEEE-CCCC
Confidence 88775 6777777 5554
No 443
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]
Probab=91.15 E-value=0.29 Score=46.98 Aligned_cols=108 Identities=17% Similarity=0.192 Sum_probs=77.0
Q ss_pred eecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCC-------eEecCccccccHHHHHhcc-CCcEEEEeeC
Q 030169 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGG-------TEHLGLPVFNSVAEAKAET-KANASVIYVP 125 (182)
Q Consensus 54 li~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G-------~~i~GvPVy~Sv~ea~~~~-~~DvaVdfVp 125 (182)
++..++|.++.|- =+...+.+.+.--.++ |-+.+.... +...-+|||.+.++++.+| ..|+-+-|..
T Consensus 5 lfe~dtKAi~~~~----q~ravqlckr~~psVa-a~~~~~~~~lqk~~~g~kei~IPv~~t~~~a~~~hp~~dv~~~faS 79 (600)
T KOG1254|consen 5 LFEYDTKAIVWGM----QQRAVQLCKRHFPSVA-AIIYFTGDRLQKIYFGQKEILIPVEKTMENALVEHPEADVEPWFAS 79 (600)
T ss_pred hhhccchHhhhhh----hhhhhhhhhccCccce-eeecccccchhheecCCceEEeechhhHHHHHhcCcccceeechhh
Confidence 4566788888884 2233334443333344 444422211 1122599999988887665 7799999999
Q ss_pred hHHHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHhccc
Q 030169 126 PPFAAAAIMEAMEA-ELDLVVCITEGIPQHDMVINFTRVNIL 166 (182)
Q Consensus 126 p~av~~a~~eAie~-GIk~VV~iTeG~~~eD~~~l~~~ak~i 166 (182)
-..|++-..++++. .+++|-++.||+|+.|..++..-+++-
T Consensus 80 ~rsv~k~~m~~~k~~ki~lvAiiAegvpe~~~~kl~~~a~~k 121 (600)
T KOG1254|consen 80 TRSVAKPDMLALKRGKIGLVAIIAEGVPEADTRKLRAGAEVK 121 (600)
T ss_pred hhhhhcchHHHhhcCcceEEEEEecCCcHHHHHHHHhccccc
Confidence 99999999999998 488898889999999999998877653
No 444
>PLN02477 glutamate dehydrogenase
Probab=91.14 E-value=1.4 Score=41.05 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=28.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTP 92 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp 92 (182)
..+|+|||+ |+-|+.+++.+.+.|.+|| |-.|.
T Consensus 206 g~~VaIqGf-GnVG~~~A~~L~e~GakVV-aVsD~ 238 (410)
T PLN02477 206 GQTFVIQGF-GNVGSWAAQLIHEKGGKIV-AVSDI 238 (410)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEE-EEECC
Confidence 478999999 9999999999999999999 64443
No 445
>PRK08264 short chain dehydrogenase; Validated
Probab=91.13 E-value=1.4 Score=35.44 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=26.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC-ceE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMV 86 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~-~IV 86 (182)
+.+|+|.|++|..|+.+++.+.+.|. +++
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~~~V~ 35 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGAAKVY 35 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCcccEE
Confidence 46799999999999999999999997 777
No 446
>PRK08263 short chain dehydrogenase; Provisional
Probab=91.12 E-value=2.1 Score=35.70 Aligned_cols=80 Identities=23% Similarity=0.246 Sum_probs=52.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CC-cEEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~-DvaVdfVpp~av~~a~~e 135 (182)
++|+|.|++|.+|+.+++.+.+.|.+|+ .++..... ++++.+.. .+ -+..|+..++.+.++++.
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~~V~--~~~r~~~~-----------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 70 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGDRVV--ATARDTAT-----------LADLAEKYGDRLLPLALDVTDRAAVFAAVET 70 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEE--EEECCHHH-----------HHHHHHhccCCeeEEEccCCCHHHHHHHHHH
Confidence 4699999999999999999999898877 44433211 11221111 11 134677788888888777
Q ss_pred HHHc--CCCEEEEeCCCCC
Q 030169 136 AMEA--ELDLVVCITEGIP 152 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~~ 152 (182)
+.+. ++..+|. ..|+.
T Consensus 71 ~~~~~~~~d~vi~-~ag~~ 88 (275)
T PRK08263 71 AVEHFGRLDIVVN-NAGYG 88 (275)
T ss_pred HHHHcCCCCEEEE-CCCCc
Confidence 7654 5677776 66653
No 447
>PRK07791 short chain dehydrogenase; Provisional
Probab=91.11 E-value=1.5 Score=37.35 Aligned_cols=91 Identities=25% Similarity=0.241 Sum_probs=55.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCcccccc-HHHHHhccCCc---EEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNS-VAEAKAETKAN---ASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~S-v~ea~~~~~~D---vaVdfVpp~av~~a~ 133 (182)
...++|.|+++..|..+++.+.+.|.+++..+.+....|..- +-.-... .+++.+ ...+ +..|...++.+.+++
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~-~~~~~~~~~~~l~~-~~~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSAS-GGSAAQAVVDEIVA-AGGEAVANGDDIADWDGAANLV 83 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCcccccccc-chhHHHHHHHHHHh-cCCceEEEeCCCCCHHHHHHHH
Confidence 457999999999999999999999988872333321111000 0001111 222211 1122 235778888899999
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. .+..+|+ ..|+
T Consensus 84 ~~~~~~~g~id~lv~-nAG~ 102 (286)
T PRK07791 84 DAAVETFGGLDVLVN-NAGI 102 (286)
T ss_pred HHHHHhcCCCCEEEE-CCCC
Confidence 888865 5788877 6665
No 448
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=91.05 E-value=0.98 Score=42.10 Aligned_cols=34 Identities=18% Similarity=0.074 Sum_probs=26.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCC
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKK 94 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~ 94 (182)
+.+|+|+|+ |-.|.++++++.-.| .++. -+|+..
T Consensus 20 ~s~VlliG~-gglGsEilKNLvL~GIg~~t--IvD~~~ 54 (425)
T cd01493 20 SAHVCLLNA-TATGTEILKNLVLPGIGSFT--IVDGSK 54 (425)
T ss_pred hCeEEEEcC-cHHHHHHHHHHHHcCCCeEE--EECCCc
Confidence 578999999 669999999999999 3444 555554
No 449
>PRK07832 short chain dehydrogenase; Provisional
Probab=91.02 E-value=1.8 Score=36.07 Aligned_cols=82 Identities=20% Similarity=0.194 Sum_probs=54.3
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHHHH
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~eA 136 (182)
+++|.|++|..|..+++.+.+.|.+++ .++..... . -...+++.... ... ...|...++.+.+++++.
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv--~~~r~~~~--~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELF--LTDRDADG--L-----AQTVADARALGGTVPEHRALDISDYDAVAAFAADI 72 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEE--EEeCCHHH--H-----HHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHH
Confidence 589999999999999999999998877 44443211 0 01122221111 122 357888899998888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|. ..|.
T Consensus 73 ~~~~~~id~lv~-~ag~ 88 (272)
T PRK07832 73 HAAHGSMDVVMN-IAGI 88 (272)
T ss_pred HHhcCCCCEEEE-CCCC
Confidence 765 5777777 5554
No 450
>PRK09291 short chain dehydrogenase; Provisional
Probab=90.95 E-value=1.7 Score=35.42 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=26.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEee
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGG 89 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~Ag 89 (182)
.+|+|.|++|..|+.+++.+.+.|.+++ +.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~-~~ 32 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVI-AG 32 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEE-EE
Confidence 4699999999999999999999998888 53
No 451
>PRK12743 oxidoreductase; Provisional
Probab=90.91 E-value=0.75 Score=37.88 Aligned_cols=84 Identities=14% Similarity=0.137 Sum_probs=53.8
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCCc-EEEEeeChHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~D-vaVdfVpp~av~~a~~eA 136 (182)
.+|+|.|++|..|+.+++.+.+.|.+++ ......... . -.. .+++... .+++ +..|+..++.+.++++++
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~~V~-~~~~~~~~~--~--~~~---~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGFDIG-ITWHSDEEG--A--KET---AEEVRSHGVRAEIRQLDLSDLPEGAQALDKL 74 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEE-EEeCCChHH--H--HHH---HHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 4689999999999999999999998887 332222211 0 001 1121111 1222 246788889999998888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. .+..+|+ ..|+
T Consensus 75 ~~~~~~id~li~-~ag~ 90 (256)
T PRK12743 75 IQRLGRIDVLVN-NAGA 90 (256)
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 765 4677776 5554
No 452
>PRK06914 short chain dehydrogenase; Provisional
Probab=90.87 E-value=1.6 Score=36.32 Aligned_cols=81 Identities=11% Similarity=0.141 Sum_probs=50.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc----CCc-EEEEeeChHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET----KAN-ASVIYVPPPFAAAAI 133 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~----~~D-vaVdfVpp~av~~a~ 133 (182)
..++|.|++|.+|+.+++.+.+.|.+|+ .++..... . ..+.+...+. ++. +..|...++.+.+ +
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~~V~--~~~r~~~~--~------~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~ 72 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGYLVI--ATMRNPEK--Q------ENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-F 72 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCEEE--EEeCCHHH--H------HHHHHHHHhcCCCCceeEEecCCCCHHHHHH-H
Confidence 3589999999999999999999999888 33332211 1 1111111111 122 2457778888888 7
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. ++..||. ..|.
T Consensus 73 ~~~~~~~~~id~vv~-~ag~ 91 (280)
T PRK06914 73 QLVLKEIGRIDLLVN-NAGY 91 (280)
T ss_pred HHHHHhcCCeeEEEE-CCcc
Confidence 776654 4666666 5554
No 453
>PRK08324 short chain dehydrogenase; Validated
Probab=90.86 E-value=1.3 Score=42.99 Aligned_cols=83 Identities=20% Similarity=0.212 Sum_probs=55.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCC-cEEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKA-NASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~-DvaVdfVpp~av~~a~~e 135 (182)
..+|+|.|++|..|+.+++.+.+.|.+|+ .++..... . ....+.+.. ..+ -+..|.+.++.+.+++++
T Consensus 422 gk~vLVTGasggIG~~la~~L~~~Ga~Vv--l~~r~~~~--~------~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~ 491 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLAAEGACVV--LADLDEEA--A------EAAAAELGGPDRALGVACDVTDEAAVQAAFEE 491 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcCEEE--EEeCCHHH--H------HHHHHHHhccCcEEEEEecCCCHHHHHHHHHH
Confidence 46799999999999999999999998888 44443211 0 011111110 012 344577888888888887
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. ++..||. ..|+
T Consensus 492 ~~~~~g~iDvvI~-~AG~ 508 (681)
T PRK08324 492 AALAFGGVDIVVS-NAGI 508 (681)
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 7765 6888887 6664
No 454
>PRK06128 oxidoreductase; Provisional
Probab=90.83 E-value=1.7 Score=37.11 Aligned_cols=85 Identities=12% Similarity=0.090 Sum_probs=53.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+|+|.|++|..|+.+++.+.+.|.+++ . +........ ...+.+.++....+ +-.|...++.+.++++
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~~V~-i-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 126 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGADIA-L-NYLPEEEQD------AAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVE 126 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCCEEE-E-EeCCcchHH------HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH
Confidence 35799999999999999999999998887 2 222111100 01122222211222 2356778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|. ..|+
T Consensus 127 ~~~~~~g~iD~lV~-nAg~ 144 (300)
T PRK06128 127 RAVKELGGLDILVN-IAGK 144 (300)
T ss_pred HHHHHhCCCCEEEE-CCcc
Confidence 87764 6888887 5554
No 455
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=90.80 E-value=0.18 Score=38.37 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=49.1
Q ss_pred ceEEEEccCCCCchhh--hHHHHHh-C-CceEEeeccCCCCCeEecCccc----cccHHHHHhccCCcEEEEeeChHHHH
Q 030169 59 TRVICQGITGKNGTFH--TEQAIEY-G-TKMVVGGVTPKKGGTEHLGLPV----FNSVAEAKAETKANASVIYVPPPFAA 130 (182)
Q Consensus 59 trViVvG~tGkmG~~v--~k~~~~~-g-~~IV~AgVdp~~~G~~i~GvPV----y~Sv~ea~~~~~~DvaVdfVpp~av~ 130 (182)
|||+|+|- | |++| +..+.+. . .+|++++=||+-... -..+++ ++.+.+..++.++|.+|+---...+.
T Consensus 1 MkVLviGs-G--gREHAia~~l~~s~~v~~v~~aPGN~G~~~~-~~~~~~~~~d~~~l~~~a~~~~idlvvvGPE~pL~~ 76 (100)
T PF02844_consen 1 MKVLVIGS-G--GREHAIAWKLSQSPSVEEVYVAPGNPGTAEL-GKNVPIDITDPEELADFAKENKIDLVVVGPEAPLVA 76 (100)
T ss_dssp EEEEEEES-S--HHHHHHHHHHTTCTTEEEEEEEE--TTGGGT-SEEE-S-TT-HHHHHHHHHHTTESEEEESSHHHHHT
T ss_pred CEEEEECC-C--HHHHHHHHHHhcCCCCCEEEEeCCCHHHHhh-ceecCCCCCCHHHHHHHHHHcCCCEEEECChHHHHH
Confidence 68999996 4 6665 4444433 2 466633334432110 011222 22255555567899999888888888
Q ss_pred HHHHHHHHcCCCEE
Q 030169 131 AAIMEAMEAELDLV 144 (182)
Q Consensus 131 ~a~~eAie~GIk~V 144 (182)
.+++.+.+.||+.+
T Consensus 77 Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 77 GLADALRAAGIPVF 90 (100)
T ss_dssp THHHHHHHTT-CEE
T ss_pred HHHHHHHHCCCcEE
Confidence 99999999998864
No 456
>PLN02253 xanthoxin dehydrogenase
Probab=90.78 E-value=1 Score=37.49 Aligned_cols=84 Identities=14% Similarity=0.059 Sum_probs=54.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
.++++|.|++|..|+.+++.+.+.|.+++ .++..... .. ...++.....++. +-.|...++.+.+++++.
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~~v~--~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 88 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGAKVC--IVDLQDDL--GQ-----NVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFT 88 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEE--EEeCCHHH--HH-----HHHHHhcCCCceEEEEeecCCHHHHHHHHHHH
Confidence 35699999999999999999999998888 44432211 00 0011111101121 346778888888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|. ..|+
T Consensus 89 ~~~~g~id~li~-~Ag~ 104 (280)
T PLN02253 89 VDKFGTLDIMVN-NAGL 104 (280)
T ss_pred HHHhCCCCEEEE-CCCc
Confidence 765 5777877 5554
No 457
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=90.75 E-value=0.74 Score=38.29 Aligned_cols=113 Identities=14% Similarity=0.145 Sum_probs=68.8
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEe------cCccccc-cHHH-HHhccCCcEEEEeeChHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEH------LGLPVFN-SVAE-AKAETKANASVIYVPPPF 128 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i------~GvPVy~-Sv~e-a~~~~~~DvaVdfVpp~a 128 (182)
+..+|+|+|+ |++|...++.+.+.|.+|+ -|+|.... ++ ..+..-. ...+ -++ ++|+++..+....
T Consensus 9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~--VIs~~~~~-~l~~l~~~~~i~~~~~~~~~~~l~--~adlViaaT~d~e 82 (202)
T PRK06718 9 SNKRVVIVGG-GKVAGRRAITLLKYGAHIV--VISPELTE-NLVKLVEEGKIRWKQKEFEPSDIV--DAFLVIAATNDPR 82 (202)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEE--EEcCCCCH-HHHHHHhCCCEEEEecCCChhhcC--CceEEEEcCCCHH
Confidence 4568999999 9999999999999998877 66665422 11 1122111 1111 133 6899888887777
Q ss_pred HHHHHHHHHHcCCCEE----------------------EEe-CCCCCHHHHHHHHHHhcc-cchhcchhhh
Q 030169 129 AAAAIMEAMEAELDLV----------------------VCI-TEGIPQHDMVINFTRVNI-LLVAFLNFIM 175 (182)
Q Consensus 129 v~~a~~eAie~GIk~V----------------------V~i-TeG~~~eD~~~l~~~ak~-ipv~~~~~~~ 175 (182)
....+.+..+.++..- |.| |.|-+..-..+|.+--+. +|=..+.|+-
T Consensus 83 lN~~i~~~a~~~~lvn~~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie~~~~~~~~~~~~ 153 (202)
T PRK06718 83 VNEQVKEDLPENALFNVITDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDELEALYDESYESYID 153 (202)
T ss_pred HHHHHHHHHHhCCcEEECCCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHHHHcchhHHHHHH
Confidence 6655544446665321 122 467777777666655544 4555555543
No 458
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=90.65 E-value=2.9 Score=36.02 Aligned_cols=102 Identities=12% Similarity=0.098 Sum_probs=62.7
Q ss_pred ecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE---ecCc--cccccHHHHHhcc-CCcEEEEeeChHH
Q 030169 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE---HLGL--PVFNSVAEAKAET-KANASVIYVPPPF 128 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~---i~Gv--PVy~Sv~ea~~~~-~~DvaVdfVpp~a 128 (182)
+.|..+++|+|+ |+-++.+++....-|++++ -+|+...-.. ..+. -++...++..... .-+.+++.++-..
T Consensus 97 ~~p~~~L~IfGa-G~va~~la~la~~lGf~V~--v~D~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~vvi~th~h~ 173 (246)
T TIGR02964 97 APPAPHVVLFGA-GHVGRALVRALAPLPCRVT--WVDSREAEFPEDLPDGVATLVTDEPEAEVAEAPPGSYFLVLTHDHA 173 (246)
T ss_pred cCCCCEEEEECC-cHHHHHHHHHHhcCCCEEE--EEeCCcccccccCCCCceEEecCCHHHHHhcCCCCcEEEEEeCChH
Confidence 457789999999 9999999999999999998 6777653110 1111 1223345554432 3466677676333
Q ss_pred -HHHHHHHHH-HcCCCEEEEeC--------------CCCCHHHHHHH
Q 030169 129 -AAAAIMEAM-EAELDLVVCIT--------------EGIPQHDMVIN 159 (182)
Q Consensus 129 -v~~a~~eAi-e~GIk~VV~iT--------------eG~~~eD~~~l 159 (182)
=.+++..++ +....=|=.+. +|++++++++|
T Consensus 174 ~D~~~L~~aL~~~~~~YIG~lGSr~k~~~~~~~L~~~G~~~~~l~ri 220 (246)
T TIGR02964 174 LDLELCHAALRRGDFAYFGLIGSKTKRARFEHRLRARGVDPAQIARM 220 (246)
T ss_pred HHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCCHHHHhhE
Confidence 346677777 34443443323 56666665554
No 459
>PRK05086 malate dehydrogenase; Provisional
Probab=90.55 E-value=1.6 Score=38.63 Aligned_cols=94 Identities=13% Similarity=0.089 Sum_probs=58.3
Q ss_pred ceEEEEccCCCCchhhhHHHHH-hC--CceEEeecc--CCCCCeE--e-c-C--cccc----ccHHHHHhccCCcEEEEe
Q 030169 59 TRVICQGITGKNGTFHTEQAIE-YG--TKMVVGGVT--PKKGGTE--H-L-G--LPVF----NSVAEAKAETKANASVIY 123 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~-~g--~~IV~AgVd--p~~~G~~--i-~-G--vPVy----~Sv~ea~~~~~~DvaVdf 123 (182)
+||+|+|++|+.|+.++..+.. .+ -+++ -++ +...|.. + + + ..|. +++.+.++ ++|++|+.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~--L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~--~~DiVIit 76 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELS--LYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALE--GADVVLIS 76 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEE--EEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcC--CCCEEEEc
Confidence 5899999999999999986643 33 3455 433 3332211 1 1 1 2232 34455566 79999987
Q ss_pred eCh----------------HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHH
Q 030169 124 VPP----------------PFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157 (182)
Q Consensus 124 Vpp----------------~av~~a~~eAie~GIk~VV~iTeG~~~eD~~ 157 (182)
.-. ..+.++++...+++.+.+|++++. |..-+.
T Consensus 77 aG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN-P~D~~t 125 (312)
T PRK05086 77 AGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN-PVNTTV 125 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC-chHHHH
Confidence 653 155667777778898888876654 444333
No 460
>PRK06196 oxidoreductase; Provisional
Probab=90.51 E-value=0.82 Score=39.25 Aligned_cols=81 Identities=11% Similarity=0.107 Sum_probs=54.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc-EEEEeeChHHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 136 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D-vaVdfVpp~av~~a~~eA 136 (182)
..+|+|.|++|..|+.+++.+.+.|.+|+ .++..... .. ...+++ . +++ +..|...++.+.+++++.
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~~Vv--~~~R~~~~--~~-----~~~~~l-~--~v~~~~~Dl~d~~~v~~~~~~~ 93 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGAHVI--VPARRPDV--AR-----EALAGI-D--GVEVVMLDLADLESVRAFAERF 93 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE--EEeCCHHH--HH-----HHHHHh-h--hCeEEEccCCCHHHHHHHHHHH
Confidence 35799999999999999999999999988 34432211 00 001111 1 122 345778888888888888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030169 137 MEA--ELDLVVCITEGI 151 (182)
Q Consensus 137 ie~--GIk~VV~iTeG~ 151 (182)
.+. ++..+|+ ..|+
T Consensus 94 ~~~~~~iD~li~-nAg~ 109 (315)
T PRK06196 94 LDSGRRIDILIN-NAGV 109 (315)
T ss_pred HhcCCCCCEEEE-CCCC
Confidence 764 6788887 5554
No 461
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.47 E-value=0.3 Score=45.27 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=48.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCe----EecCcccccc--HHHHHhccCCcEEEEeeCh-HHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGT----EHLGLPVFNS--VAEAKAETKANASVIYVPP-PFAA 130 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~----~i~GvPVy~S--v~ea~~~~~~DvaVdfVpp-~av~ 130 (182)
.+||+|+|+ |+.|..+++.+.+.|.++. +.|...... +..|++++.. ..+-++ ++|++| ++|. ..-.
T Consensus 15 ~~~v~v~G~-G~sG~a~a~~L~~~G~~V~--~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~--~~d~vV-~Spgi~~~~ 88 (473)
T PRK00141 15 SGRVLVAGA-GVSGRGIAAMLSELGCDVV--VADDNETARHKLIEVTGVADISTAEASDQLD--SFSLVV-TSPGWRPDS 88 (473)
T ss_pred CCeEEEEcc-CHHHHHHHHHHHHCCCEEE--EECCChHHHHHHHHhcCcEEEeCCCchhHhc--CCCEEE-eCCCCCCCC
Confidence 357999998 9999999999999998777 666532211 1237777643 223233 567554 3431 1112
Q ss_pred HHHHHHHHcCCCE
Q 030169 131 AAIMEAMEAELDL 143 (182)
Q Consensus 131 ~a~~eAie~GIk~ 143 (182)
..+.+|.+.|++.
T Consensus 89 p~~~~a~~~gi~v 101 (473)
T PRK00141 89 PLLVDAQSQGLEV 101 (473)
T ss_pred HHHHHHHHCCCce
Confidence 3456666777654
No 462
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.46 E-value=0.5 Score=43.02 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=29.8
Q ss_pred ecCCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC
Q 030169 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK 94 (182)
Q Consensus 55 i~~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~ 94 (182)
+..+--|+|+|+ |+.|..+++.+.+.|.++. |.|.+.
T Consensus 3 ~~~~~~~~v~G~-G~sG~s~a~~L~~~G~~v~--~~D~~~ 39 (448)
T PRK03803 3 MQSDGLHIVVGL-GKTGLSVVRFLARQGIPFA--VMDSRE 39 (448)
T ss_pred cccCCeEEEEee-cHhHHHHHHHHHhCCCeEE--EEeCCC
Confidence 445666999999 9999998999999998877 666543
No 463
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.46 E-value=1.5 Score=36.35 Aligned_cols=82 Identities=10% Similarity=0.044 Sum_probs=53.4
Q ss_pred CceEEEEccC--CCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGIT--GKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~t--GkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~ 134 (182)
...++|.|++ +..|+.+++.+.+.|.+|+ .++..... -..+++.... .+ =+.+|...++.+.++++
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi--~~~r~~~~--------~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~ 75 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVI--YTYQNDRM--------KKSLQKLVDE-EDLLVECDVASDESIERAFA 75 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEE--EecCchHH--------HHHHHhhccC-ceeEEeCCCCCHHHHHHHHH
Confidence 3568999998 6899999999999999988 33332100 0112221111 11 23467788899999998
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. .+..+|+ ..|+
T Consensus 76 ~~~~~~g~iD~lv~-nAg~ 93 (252)
T PRK06079 76 TIKERVGKIDGIVH-AIAY 93 (252)
T ss_pred HHHHHhCCCCEEEE-cccc
Confidence 88764 4777776 5554
No 464
>PRK08618 ornithine cyclodeaminase; Validated
Probab=90.43 E-value=0.31 Score=43.06 Aligned_cols=96 Identities=13% Similarity=0.052 Sum_probs=64.0
Q ss_pred CceEEEEccCCCCchhhhHHHH-HhCCceEEeeccCCCCCeE--------ecC--ccccccHHHHHhccCCcEEEEeeCh
Q 030169 58 NTRVICQGITGKNGTFHTEQAI-EYGTKMVVGGVTPKKGGTE--------HLG--LPVFNSVAEAKAETKANASVIYVPP 126 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~-~~g~~IV~AgVdp~~~G~~--------i~G--vPVy~Sv~ea~~~~~~DvaVdfVpp 126 (182)
..+++|+|+ |.+|+.++..+. ..+++-+ .-+++....-+ ..+ +.+|.+.++++. +.|+++..+|.
T Consensus 127 ~~~v~iiGa-G~~a~~~~~al~~~~~~~~v-~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~aDiVi~aT~s 202 (325)
T PRK08618 127 AKTLCLIGT-GGQAKGQLEAVLAVRDIERV-RVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIE--EADIIVTVTNA 202 (325)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhcCCccEE-EEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHh--cCCEEEEccCC
Confidence 456999999 999999987665 4565555 45555431110 113 345888999887 89999999986
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCC---CCCHHHHHHHH
Q 030169 127 PFAAAAIMEAMEAELDLVVCITE---GIPQHDMVINF 160 (182)
Q Consensus 127 ~av~~a~~eAie~GIk~VV~iTe---G~~~eD~~~l~ 160 (182)
. ..-.. ++++.|.++.-+ .. +..|.|.+.+.
T Consensus 203 ~-~p~i~-~~l~~G~hV~~i-Gs~~p~~~E~~~~~~~ 236 (325)
T PRK08618 203 K-TPVFS-EKLKKGVHINAV-GSFMPDMQELPSEAIA 236 (325)
T ss_pred C-CcchH-HhcCCCcEEEec-CCCCcccccCCHHHHh
Confidence 6 44445 888999886544 33 55566654333
No 465
>PRK08309 short chain dehydrogenase; Provisional
Probab=90.41 E-value=0.27 Score=40.09 Aligned_cols=83 Identities=14% Similarity=-0.023 Sum_probs=54.7
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCC---------CeEe----cCccccccHHHHHh----c-cCCcEE
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKG---------GTEH----LGLPVFNSVAEAKA----E-TKANAS 120 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~---------G~~i----~GvPVy~Sv~ea~~----~-~~~Dva 120 (182)
|+++|.|++| +|..+++.+.+.|.++++..-++... +..+ .++--..++.++++ + ..+|+.
T Consensus 1 m~vlVtGGtG-~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~l 79 (177)
T PRK08309 1 MHALVIGGTG-MLKRVSLWLCEKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDLA 79 (177)
T ss_pred CEEEEECcCH-HHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeEE
Confidence 4689999986 77778999998898877223222110 0011 12222233444333 2 257999
Q ss_pred EEeeChHHHHHHHHHHHHcCCC
Q 030169 121 VIYVPPPFAAAAIMEAMEAELD 142 (182)
Q Consensus 121 VdfVpp~av~~a~~eAie~GIk 142 (182)
+..++......++..|-+.|++
T Consensus 80 v~~vh~~~~~~~~~~~~~~gv~ 101 (177)
T PRK08309 80 VAWIHSSAKDALSVVCRELDGS 101 (177)
T ss_pred EEeccccchhhHHHHHHHHccC
Confidence 9999999999999999999998
No 466
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=90.41 E-value=0.67 Score=41.84 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=58.8
Q ss_pred eEEEEccCCCCchhhhHHHHHh---CCceEEeeccCCCC------------------------C--eEecC---ccccc-
Q 030169 60 RVICQGITGKNGTFHTEQAIEY---GTKMVVGGVTPKKG------------------------G--TEHLG---LPVFN- 106 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~---g~~IV~AgVdp~~~------------------------G--~~i~G---vPVy~- 106 (182)
||.|-|| |+.|+.+.+.+++. +++|| |.-|+... + -.++| +.|+.
T Consensus 1 ~i~INGf-GRIGr~~~r~~~~~~~~~~~iv-aind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~ 78 (327)
T TIGR01534 1 KVGINGF-GRIGRLVLRAILEKQGLDLEVV-AINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASE 78 (327)
T ss_pred CEEEEcc-ChHHHHHHHHHHhccCCceEEE-EEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEec
Confidence 5889999 99999999987754 48888 64433110 0 00112 23342
Q ss_pred -cHHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030169 107 -SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 107 -Sv~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~ 146 (182)
++++.. ++.++|+++..+......+.+..++++|.+.|++
T Consensus 79 ~dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~i 120 (327)
T TIGR01534 79 RDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLI 120 (327)
T ss_pred CCcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEe
Confidence 344443 3347999999999999999999999999998887
No 467
>PRK07023 short chain dehydrogenase; Provisional
Probab=90.39 E-value=2.4 Score=34.45 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=42.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~e 135 (182)
++++|.|++|..|+.+++.+.+.|.+++ .++..... +. .++ .. .++ =+.+|+..++.+.+++.+
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G~~v~--~~~r~~~~-~~--------~~~-~~-~~~~~~~~D~~~~~~~~~~~~~ 66 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPGIAVL--GVARSRHP-SL--------AAA-AG-ERLAEVELDLSDAAAAAAWLAG 66 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCCCEEE--EEecCcch-hh--------hhc-cC-CeEEEEEeccCCHHHHHHHHHH
Confidence 4799999999999999999999998888 45443311 00 010 00 011 134677778878777666
No 468
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=90.38 E-value=1.9 Score=34.68 Aligned_cols=83 Identities=16% Similarity=0.146 Sum_probs=50.9
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc--CCc-EEEEeeChHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~--~~D-vaVdfVpp~av~~a~~e 135 (182)
.+++|.|++|..|+.+++.+.+.|.+++ ..+..... +. ....+..... +++ ...|+..++.+.+++++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~~vi--~~~r~~~~-~~------~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 73 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGYRVI--ATYFSGND-CA------KDWFEEYGFTEDQVRLKELDVTDTEECAEALAE 73 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEE--EEeCCcHH-HH------HHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHH
Confidence 3689999999999999999998898888 33332210 00 0011111111 122 23466777888888877
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. .+..+|+ ..|.
T Consensus 74 ~~~~~~~id~vi~-~ag~ 90 (245)
T PRK12824 74 IEEEEGPVDILVN-NAGI 90 (245)
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 7654 5787887 5553
No 469
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=90.38 E-value=0.68 Score=42.15 Aligned_cols=88 Identities=13% Similarity=-0.002 Sum_probs=54.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeE------------e---------------c-C--ccccc
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTE------------H---------------L-G--LPVFN 106 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~------------i---------------~-G--vPVy~ 106 (182)
+.||+|+|+ |-.|..+++.+...| .+|. .+|+...... + + + +-.++
T Consensus 41 ~~~VliiG~-GglG~~v~~~La~~Gvg~i~--ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 117 (370)
T PRK05600 41 NARVLVIGA-GGLGCPAMQSLASAGVGTIT--LIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALR 117 (370)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEE--EEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEee
Confidence 467999999 999999999999999 4555 5555432211 0 0 1 11222
Q ss_pred ------cHHHHHhccCCcEEEEeeChHHHHH-HHHHHHHcCCCEEEEeCCC
Q 030169 107 ------SVAEAKAETKANASVIYVPPPFAAA-AIMEAMEAELDLVVCITEG 150 (182)
Q Consensus 107 ------Sv~ea~~~~~~DvaVdfVpp~av~~-a~~eAie~GIk~VV~iTeG 150 (182)
++.++++ ++|++++.+-...+.. +-+.|.+.++|.|.+-..|
T Consensus 118 ~~i~~~~~~~~~~--~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g 166 (370)
T PRK05600 118 ERLTAENAVELLN--GVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLR 166 (370)
T ss_pred eecCHHHHHHHHh--CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEec
Confidence 1334444 6788877776555543 3355667788877664433
No 470
>PLN00203 glutamyl-tRNA reductase
Probab=90.32 E-value=0.17 Score=48.22 Aligned_cols=102 Identities=20% Similarity=0.187 Sum_probs=62.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCCCe-E----ecCc----cccccHHHHHhccCCcEEEEee---
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKGGT-E----HLGL----PVFNSVAEAKAETKANASVIYV--- 124 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~G~-~----i~Gv----PVy~Sv~ea~~~~~~DvaVdfV--- 124 (182)
..+|+|+|+ |.||+.+++.+...|. +|+ .+++....- . ..+. ..++++.+++. ++|+++..+
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~--V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~--~aDVVIsAT~s~ 340 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSKGCTKMV--VVNRSEERVAALREEFPDVEIIYKPLDEMLACAA--EADVVFTSTSSE 340 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhCCCCeEE--EEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHh--cCCEEEEccCCC
Confidence 467999999 9999999999998885 566 455542110 1 1122 12445666666 799988885
Q ss_pred ChHHHHHHHHHHHHc----CCCEE-EEeC------------CCCCHHHHHHHHHHhc
Q 030169 125 PPPFAAAAIMEAMEA----ELDLV-VCIT------------EGIPQHDMVINFTRVN 164 (182)
Q Consensus 125 pp~av~~a~~eAie~----GIk~V-V~iT------------eG~~~eD~~~l~~~ak 164 (182)
+|-...+.++.+... |-+.+ |=++ +|+..-|++.|.+.+.
T Consensus 341 ~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v~~l~~v~lydiDdL~~i~~ 397 (519)
T PLN00203 341 TPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACVSELESARVYNVDDLKEVVA 397 (519)
T ss_pred CCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCccccccCCCCeEEEeccHHHHHH
Confidence 344455666666532 23333 2222 5666666666666553
No 471
>PRK08589 short chain dehydrogenase; Validated
Probab=90.31 E-value=1.5 Score=36.60 Aligned_cols=83 Identities=17% Similarity=0.150 Sum_probs=55.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhcc-CC-cEEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KA-NASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~-~~-DvaVdfVpp~av~~a~~e 135 (182)
..+++|.|++|..|+.+++.+.+.|.+++ .++... . . -...+++.+.. ++ -+..|...++.+..++++
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~~vi--~~~r~~-~--~-----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 75 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGAYVL--AVDIAE-A--V-----SETVDKIKSNGGKAKAYHVDISDEQQVKDFASE 75 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE--EEeCcH-H--H-----HHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHH
Confidence 45799999999999999999999999988 444331 1 0 01122221110 12 245778888888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030169 136 AMEA--ELDLVVCITEGI 151 (182)
Q Consensus 136 Aie~--GIk~VV~iTeG~ 151 (182)
+.+. ++..+|+ ..|+
T Consensus 76 ~~~~~g~id~li~-~Ag~ 92 (272)
T PRK08589 76 IKEQFGRVDVLFN-NAGV 92 (272)
T ss_pred HHHHcCCcCEEEE-CCCC
Confidence 8865 4777776 5454
No 472
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=90.30 E-value=2 Score=34.87 Aligned_cols=84 Identities=17% Similarity=0.053 Sum_probs=50.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eAi 137 (182)
++|+|.|++|..|+.+++.+.+.|.+++ ..+...... . -.++..+++.. .++ -+..|...++...++++++.
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~~v~-~~~~~~~~~--~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGWSVG-INYARDAAA--A--EETADAVRAAG--GRACVVAGDVANEADVIAMFDAVQ 75 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCCEEE-EEeCCCHHH--H--HHHHHHHHhcC--CcEEEEEeccCCHHHHHHHHHHHH
Confidence 4699999999999999999999998877 333222111 0 01111111100 011 23356667778888887776
Q ss_pred Hc--CCCEEEEeCCC
Q 030169 138 EA--ELDLVVCITEG 150 (182)
Q Consensus 138 e~--GIk~VV~iTeG 150 (182)
+. .+..+|+ ..|
T Consensus 76 ~~~~~id~li~-~ag 89 (248)
T PRK06947 76 SAFGRLDALVN-NAG 89 (248)
T ss_pred HhcCCCCEEEE-CCc
Confidence 54 4777776 444
No 473
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.30 E-value=2.7 Score=33.93 Aligned_cols=84 Identities=11% Similarity=0.083 Sum_probs=53.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
..+|+|.|++|..|+.+++.+.+.|.+++ ..+.+.... . .+.+.+..+ .+.+ ...|...+....++++
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~~v~-~~~~~~~~~--~-----~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~ 76 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGSLVV-VNAKKRAEE--M-----NETLKMVKE-NGGEGIGVLADVSTREGCETLAK 76 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCCEEE-EEeCCChHH--H-----HHHHHHHHH-cCCeeEEEEeccCCHHHHHHHHH
Confidence 35799999999999999999999998877 433332210 1 111222111 1112 2356777777777777
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..||. ..|+
T Consensus 77 ~~~~~~~~~d~vi~-~ag~ 94 (252)
T PRK06077 77 ATIDRYGVADILVN-NAGL 94 (252)
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 77654 5777776 6664
No 474
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=90.29 E-value=0.55 Score=42.38 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=26.2
Q ss_pred eEEEEccCCCCchhhhHHHHHhCCceEEeeccCC
Q 030169 60 RVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK 93 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~ 93 (182)
||.|+|+ |+.|..+++.+.+.|.+|. |.|.+
T Consensus 1 ~~~~iG~-G~~G~a~a~~l~~~G~~V~--~sD~~ 31 (433)
T TIGR01087 1 KILILGL-GKTGRAVARFLHKKGAEVT--VTDLK 31 (433)
T ss_pred CEEEEEe-CHhHHHHHHHHHHCCCEEE--EEeCC
Confidence 5789998 9999988999999999888 66644
No 475
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=90.26 E-value=0.82 Score=37.03 Aligned_cols=86 Identities=20% Similarity=0.212 Sum_probs=47.1
Q ss_pred cCCceEEEEccCCCCchhhhHHHHH-hC-CceEEeeccCCCCCeEecC--ccccccHHHHHhccCCcEEEEeeChHHHHH
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIE-YG-TKMVVGGVTPKKGGTEHLG--LPVFNSVAEAKAETKANASVIYVPPPFAAA 131 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~-~g-~~IV~AgVdp~~~G~~i~G--vPVy~Sv~ea~~~~~~DvaVdfVpp~av~~ 131 (182)
....+|+++|| |.-|..+...+-- .. ...+ ...||.+-|.-..| +||++.= ++.+ ..+|.++++ ++....+
T Consensus 66 ~~gk~I~~yGA-~~kg~tlln~~g~~~~~I~~v-vD~np~K~G~~~PGt~ipI~~p~-~l~~-~~pd~vivl-aw~y~~E 140 (160)
T PF08484_consen 66 AEGKRIAGYGA-GAKGNTLLNYFGLDNDLIDYV-VDDNPLKQGKYLPGTHIPIVSPE-ELKE-RKPDYVIVL-AWNYKDE 140 (160)
T ss_dssp HTT--EEEE----SHHHHHHHHHT--TTTS--E-EES-GGGTTEE-TTT--EEEEGG-G--S-S--SEEEES--GGGHHH
T ss_pred HcCCEEEEECc-chHHHHHHHHhCCCcceeEEE-EeCChhhcCcccCCCCCeECCHH-HHhh-CCCCEEEEc-ChhhHHH
Confidence 45577999999 7777777666552 22 4445 58899999977764 9998763 3333 378998774 4677777
Q ss_pred HHH---HHHHcCCCEEEE
Q 030169 132 AIM---EAMEAELDLVVC 146 (182)
Q Consensus 132 a~~---eAie~GIk~VV~ 146 (182)
+.+ +..+.|-+.|+.
T Consensus 141 I~~~~~~~~~~gg~fi~p 158 (160)
T PF08484_consen 141 IIEKLREYLERGGKFIVP 158 (160)
T ss_dssp HHHHTHHHHHTT-EEEE-
T ss_pred HHHHHHHHHhcCCEEEEe
Confidence 664 445678777765
No 476
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=90.25 E-value=1.5 Score=38.61 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=51.6
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCC-ceEEeeccCCCC---CeEe-----------c-CccccccHHHHHhccCCcEEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVVGGVTPKKG---GTEH-----------L-GLPVFNSVAEAKAETKANASV 121 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~-~IV~AgVdp~~~---G~~i-----------~-GvPVy~Sv~ea~~~~~~DvaV 121 (182)
++||.|+|+ |.||..++..+...|. +++ .+|.... |+.. . -+....+.++ .+ ++|+++
T Consensus 1 ~~KV~VIGa-G~vG~~iA~~la~~g~~~Vv--lvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~--~aDiVI 74 (305)
T TIGR01763 1 RKKISVIGA-GFVGATTAFRLAEKELADLV--LLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TA--NSDIVV 74 (305)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHcCCCeEE--EEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hC--CCCEEE
Confidence 368999998 9999999998888773 766 6666321 1100 0 1222345655 44 689999
Q ss_pred EeeCh----------------HHHHHHHHHHHHcCCCEEEE
Q 030169 122 IYVPP----------------PFAAAAIMEAMEAELDLVVC 146 (182)
Q Consensus 122 dfVpp----------------~av~~a~~eAie~GIk~VV~ 146 (182)
++++. ..+.++++...+++-+.+++
T Consensus 75 itag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iI 115 (305)
T TIGR01763 75 ITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIV 115 (305)
T ss_pred EcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 98872 34445555556665555444
No 477
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=90.18 E-value=0.83 Score=41.19 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=27.9
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCC
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPK 93 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~ 93 (182)
++.||+|+|+ |..|..+++.+...| .+|. -+|+.
T Consensus 134 ~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~--lvD~d 168 (376)
T PRK08762 134 LEARVLLIGA-GGLGSPAALYLAAAGVGTLG--IVDHD 168 (376)
T ss_pred hcCcEEEECC-CHHHHHHHHHHHHcCCCeEE--EEeCC
Confidence 4678999999 999999999999999 4555 66665
No 478
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.10 E-value=1.8 Score=37.25 Aligned_cols=85 Identities=16% Similarity=0.118 Sum_probs=53.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC---cEEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA---NASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~---DvaVdfVpp~av~~a~~ 134 (182)
..+++|.|++|-.|..+++.+.+.|.+++ .++..... ..-...+++ +.... -.-.|...++.+.++++
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv--~~~~~~~~------~~~~~~~~i-~~~g~~~~~~~~Dv~d~~~~~~~~~ 82 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLARLGATVV--VNDVASAL------DASDVLDEI-RAAGAKAVAVAGDISQRATADELVA 82 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE--EecCCchh------HHHHHHHHH-HhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 35699999999999999999999998888 33332111 000111222 11111 23346677888888888
Q ss_pred HHHHc-CCCEEEEeCCCCC
Q 030169 135 EAMEA-ELDLVVCITEGIP 152 (182)
Q Consensus 135 eAie~-GIk~VV~iTeG~~ 152 (182)
++.+. ++..+|+ ..|+.
T Consensus 83 ~~~~~g~iD~li~-nAG~~ 100 (306)
T PRK07792 83 TAVGLGGLDIVVN-NAGIT 100 (306)
T ss_pred HHHHhCCCCEEEE-CCCCC
Confidence 77764 4777777 66653
No 479
>PRK05855 short chain dehydrogenase; Validated
Probab=90.09 E-value=1.5 Score=39.85 Aligned_cols=83 Identities=18% Similarity=0.070 Sum_probs=55.4
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
+.+++|.|++|-.|+.+++.+.+.|.+|+ .++..... . ..+.+.+.+...+ +..|...++.+.++++
T Consensus 315 ~~~~lv~G~s~giG~~~a~~l~~~G~~v~--~~~r~~~~--~------~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~ 384 (582)
T PRK05855 315 GKLVVVTGAGSGIGRETALAFAREGAEVV--ASDIDEAA--A------ERTAELIRAAGAVAHAYRVDVSDADAMEAFAE 384 (582)
T ss_pred CCEEEEECCcCHHHHHHHHHHHHCCCEEE--EEeCCHHH--H------HHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 46799999999999999999999998877 44443211 0 1111111111111 2467788899999998
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. .+..+|+ ..|+
T Consensus 385 ~~~~~~g~id~lv~-~Ag~ 402 (582)
T PRK05855 385 WVRAEHGVPDIVVN-NAGI 402 (582)
T ss_pred HHHHhcCCCcEEEE-CCcc
Confidence 88765 4788887 6665
No 480
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.07 E-value=1.4 Score=35.53 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=28.1
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCC
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK 93 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~ 93 (182)
.+++|.|++|..|+.+++.+.+.|.+++ .++..
T Consensus 6 k~~lVtGas~~iG~~ia~~l~~~G~~v~--~~~r~ 38 (235)
T PRK06550 6 KTVLITGAASGIGLAQARAFLAQGAQVY--GVDKQ 38 (235)
T ss_pred CEEEEcCCCchHHHHHHHHHHHCCCEEE--EEeCC
Confidence 5689999999999999999999998888 44443
No 481
>PRK14030 glutamate dehydrogenase; Provisional
Probab=90.06 E-value=0.62 Score=43.86 Aligned_cols=30 Identities=30% Similarity=0.343 Sum_probs=27.4
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEe
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVG 88 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~A 88 (182)
+..||+|||+ |+.|+..++.+.+.|.+|| +
T Consensus 227 ~g~~vaIQGf-GnVG~~aA~~L~e~GakvV-a 256 (445)
T PRK14030 227 KGKTVAISGF-GNVAWGAATKATELGAKVV-T 256 (445)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-E
Confidence 3578999999 9999999999999999999 5
No 482
>PRK06483 dihydromonapterin reductase; Provisional
Probab=89.97 E-value=2 Score=34.75 Aligned_cols=79 Identities=10% Similarity=0.031 Sum_probs=52.4
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC-cEEEEeeChHHHHHHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~-DvaVdfVpp~av~~a~~eAi 137 (182)
.+++|.|++|..|+.+++.+.+.|.+|+ .++..... . .+++ ++.++ =+..|...++.+.+++++..
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~~V~--~~~r~~~~-------~---~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~ 69 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQPVI--VSYRTHYP-------A---IDGL-RQAGAQCIQADFSTNAGIMAFIDELK 69 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCCeEE--EEeCCchh-------H---HHHH-HHcCCEEEEcCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999988 44443211 1 1221 11111 13456777888888888777
Q ss_pred Hc--CCCEEEEeCCCC
Q 030169 138 EA--ELDLVVCITEGI 151 (182)
Q Consensus 138 e~--GIk~VV~iTeG~ 151 (182)
+. ++..+|. ..|+
T Consensus 70 ~~~~~id~lv~-~ag~ 84 (236)
T PRK06483 70 QHTDGLRAIIH-NASD 84 (236)
T ss_pred hhCCCccEEEE-CCcc
Confidence 64 4777777 4443
No 483
>PRK09134 short chain dehydrogenase; Provisional
Probab=89.90 E-value=3.1 Score=34.13 Aligned_cols=84 Identities=12% Similarity=0.088 Sum_probs=52.8
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc--cCCc-EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE--TKAN-ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~--~~~D-vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|..|+.+++.+.+.|.+++ ......... . ..+.+.+.. .+++ +..|...++.+.++++
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g~~v~-~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 79 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHGFDVA-VHYNRSRDE--A------EALAAEIRALGRRAVALQADLADEAEVRALVA 79 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeCCCHHH--H------HHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 45799999999999999999999998887 433322111 0 111111111 1222 3346777888888877
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030169 135 EAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 135 eAie~--GIk~VV~iTeG~ 151 (182)
++.+. ++..+|. ..|+
T Consensus 80 ~~~~~~~~iD~vi~-~ag~ 97 (258)
T PRK09134 80 RASAALGPITLLVN-NASL 97 (258)
T ss_pred HHHHHcCCCCEEEE-CCcC
Confidence 77653 5777777 5554
No 484
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=89.88 E-value=1.3 Score=39.58 Aligned_cols=109 Identities=16% Similarity=0.103 Sum_probs=66.6
Q ss_pred ceEEEEccCCCCchhhhHHHHHhCCceEEe-eccCCCCCeE-ecCccccccHHHHHhcc-CCcEEEEeeChH-HHHHHHH
Q 030169 59 TRVICQGITGKNGTFHTEQAIEYGTKMVVG-GVTPKKGGTE-HLGLPVFNSVAEAKAET-KANASVIYVPPP-FAAAAIM 134 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~g~~IV~A-gVdp~~~G~~-i~GvPVy~Sv~ea~~~~-~~DvaVdfVpp~-av~~a~~ 134 (182)
+++-++|. ||||..+++.+++.|-++| + .+||.....- -.|...-.|++|++... .|.++-+-||+. .+..+++
T Consensus 1 M~iGmiGL-GrMG~n~v~rl~~~ghdvV-~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~ 78 (300)
T COG1023 1 MQIGMIGL-GRMGANLVRRLLDGGHDVV-GYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID 78 (300)
T ss_pred Ccceeecc-chhhHHHHHHHHhCCCeEE-EEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH
Confidence 35778898 9999999999999999999 3 3444331100 13677788888888765 678888889988 5555555
Q ss_pred HHHHc-CCCEEEEeCCCCCHHHHHHHHHHhcccchh
Q 030169 135 EAMEA-ELDLVVCITEGIPQHDMVINFTRVNILLVA 169 (182)
Q Consensus 135 eAie~-GIk~VV~iTeG~~~eD~~~l~~~ak~ipv~ 169 (182)
+.-.. .---||+=.-.---+|..+-.+..++--|.
T Consensus 79 ~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~ 114 (300)
T COG1023 79 DLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH 114 (300)
T ss_pred HHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe
Confidence 54333 222244312222234444444444443333
No 485
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.88 E-value=2.5 Score=34.19 Aligned_cols=83 Identities=14% Similarity=0.043 Sum_probs=51.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc-cCCc-EEEEeeChHHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIME 135 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~-~~~D-vaVdfVpp~av~~a~~e 135 (182)
.++++|.|++|..|+.+++.+.+.|.+++ ....+.. . . .-...++.... .++. +..|...++.+..++++
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g~~v~-~~~~r~~-~-~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEGYDIA-VNYARSR-K-A-----AEETAEEIEALGRKALAVKANVGDVEKIKEMFAQ 75 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEcCCCH-H-H-----HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 35799999999999999999999998877 4333322 1 0 11112221111 0111 33566777777777777
Q ss_pred HHHc--CCCEEEEeC
Q 030169 136 AMEA--ELDLVVCIT 148 (182)
Q Consensus 136 Aie~--GIk~VV~iT 148 (182)
..+. ++..+|+.+
T Consensus 76 ~~~~~~~id~vi~~a 90 (250)
T PRK08063 76 IDEEFGRLDVFVNNA 90 (250)
T ss_pred HHHHcCCCCEEEECC
Confidence 6654 577787733
No 486
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=89.86 E-value=1.1 Score=40.61 Aligned_cols=72 Identities=26% Similarity=0.216 Sum_probs=54.6
Q ss_pred CCceEEEEccCCCCc---------hhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCcEEEEeeChH
Q 030169 57 KNTRVICQGITGKNG---------TFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP 127 (182)
Q Consensus 57 ~~trViVvG~tGkmG---------~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~ 127 (182)
+..+|+|.|.+=|-+ ..+++.+.+.|.+|. ..||.........++.+.+++|+.+ +.|++|+.+..+
T Consensus 312 ~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~--~~DP~~~~~~~~~~~~~~~~~~~~~--~ad~~v~~t~~~ 387 (411)
T TIGR03026 312 KGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVK--AYDPLVPEEEVKGLPLIDDLEEALK--GADALVILTDHD 387 (411)
T ss_pred cCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEE--EECCCCChhhhhhcccCCCHHHHHh--CCCEEEEecCCH
Confidence 457899999985555 355788889998888 8999864433334555688988888 899999999988
Q ss_pred HHHHH
Q 030169 128 FAAAA 132 (182)
Q Consensus 128 av~~a 132 (182)
.-.+.
T Consensus 388 ~~~~~ 392 (411)
T TIGR03026 388 EFKDL 392 (411)
T ss_pred HHhcc
Confidence 76544
No 487
>PRK06701 short chain dehydrogenase; Provisional
Probab=89.83 E-value=2.2 Score=36.35 Aligned_cols=80 Identities=13% Similarity=0.075 Sum_probs=51.3
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 134 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~~ 134 (182)
.++++|.|++|..|..+++.+.+.|.+++ .++..... ... ..++..+....+ +..|....+...++++
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~~V~--l~~r~~~~----~~~---~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 116 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGADIA--IVYLDEHE----DAN---ETKQRVEKEGVKCLLIPGDVSDEAFCKDAVE 116 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE--EEeCCcch----HHH---HHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 46799999999999999999999998877 44333211 011 112222211222 3456777888888877
Q ss_pred HHHHc--CCCEEEE
Q 030169 135 EAMEA--ELDLVVC 146 (182)
Q Consensus 135 eAie~--GIk~VV~ 146 (182)
+..+. ++..+|.
T Consensus 117 ~i~~~~~~iD~lI~ 130 (290)
T PRK06701 117 ETVRELGRLDILVN 130 (290)
T ss_pred HHHHHcCCCCEEEE
Confidence 77664 5777776
No 488
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=89.77 E-value=1.3 Score=37.90 Aligned_cols=88 Identities=16% Similarity=0.025 Sum_probs=54.4
Q ss_pred eEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCCCeE------------e----------------cCc---ccccc
Q 030169 60 RVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKGGTE------------H----------------LGL---PVFNS 107 (182)
Q Consensus 60 rViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~G~~------------i----------------~Gv---PVy~S 107 (182)
||+|+|+ |..|..+++.+...| .+|. .+|+...... + .++ +....
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gvg~i~--ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGFGQIH--VIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEE--EEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 6899998 999999999999888 4454 4444332211 0 011 11122
Q ss_pred H-------HHHHhccCCcEEEEeeChHHHH-HHHHHHHHcCCCEEEEeCCCCC
Q 030169 108 V-------AEAKAETKANASVIYVPPPFAA-AAIMEAMEAELDLVVCITEGIP 152 (182)
Q Consensus 108 v-------~ea~~~~~~DvaVdfVpp~av~-~a~~eAie~GIk~VV~iTeG~~ 152 (182)
+ .+..+ ++|++++.+-.-.+. -+-+.|.+.++|.|-+-|+|+.
T Consensus 78 i~~~~~~~~~f~~--~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~ 128 (234)
T cd01484 78 VGPEQDFNDTFFE--QFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFK 128 (234)
T ss_pred CChhhhchHHHHh--CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCc
Confidence 2 22334 688888876555554 4556667778888877666653
No 489
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=89.72 E-value=1.7 Score=37.98 Aligned_cols=94 Identities=13% Similarity=0.115 Sum_probs=59.0
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCC---------CCeEe------cCccccccHHHHHhccCCcEEEE
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKK---------GGTEH------LGLPVFNSVAEAKAETKANASVI 122 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~---------~G~~i------~GvPVy~Sv~ea~~~~~~DvaVd 122 (182)
.+||+|+|+ |.+|..+.-.+.+.|.++. .+++.. .|-.+ ..+|+.....+..+ .+|.+++
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~~V~--lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~--~~D~viv 76 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGLPVR--LILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAE--PIHRLLL 76 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCCCeE--EEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCccccc--ccCEEEE
Confidence 478999999 9999999998888886665 444431 12111 11222222222122 6899999
Q ss_pred eeChHHHHHHHHHHHHc-CCC-EEEEeCCCCCHHHH
Q 030169 123 YVPPPFAAAAIMEAMEA-ELD-LVVCITEGIPQHDM 156 (182)
Q Consensus 123 fVpp~av~~a~~eAie~-GIk-~VV~iTeG~~~eD~ 156 (182)
+|-.....+++...... +-. .|+.+--|+..++.
T Consensus 77 ~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~ 112 (305)
T PRK05708 77 ACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDA 112 (305)
T ss_pred ECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHH
Confidence 99998888877665442 222 35555788876553
No 490
>PRK06197 short chain dehydrogenase; Provisional
Probab=89.68 E-value=0.55 Score=39.98 Aligned_cols=84 Identities=14% Similarity=0.108 Sum_probs=54.1
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhc---cCCc-EEEEeeChHHHHHHH
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAE---TKAN-ASVIYVPPPFAAAAI 133 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~---~~~D-vaVdfVpp~av~~a~ 133 (182)
.++|+|.|++|..|+.+++.+.+.|.+++ .+...... . -.. .+++.+. .++. +.+|...++.+..++
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G~~vi--~~~r~~~~--~--~~~---~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~ 86 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGAHVV--LAVRNLDK--G--KAA---AARITAATPGADVTLQELDLTSLASVRAAA 86 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCCEEE--EEeCCHHH--H--HHH---HHHHHHhCCCCceEEEECCCCCHHHHHHHH
Confidence 46799999999999999999999998887 34332211 0 011 1222211 1122 245777888888888
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030169 134 MEAMEA--ELDLVVCITEGI 151 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~ 151 (182)
+++.+. ++..+|. ..|+
T Consensus 87 ~~~~~~~~~iD~li~-nAg~ 105 (306)
T PRK06197 87 DALRAAYPRIDLLIN-NAGV 105 (306)
T ss_pred HHHHhhCCCCCEEEE-CCcc
Confidence 888765 5787877 5554
No 491
>PRK06484 short chain dehydrogenase; Validated
Probab=89.58 E-value=1.8 Score=39.54 Aligned_cols=111 Identities=12% Similarity=0.069 Sum_probs=0.0
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCCc---EEEEeeChHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAI 133 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~D---vaVdfVpp~av~~a~ 133 (182)
+...++|.|+++..|..+++.+.+.|.+|+ .++..... ++++.++...+ +.+|...++.+.+++
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~--~~~r~~~~-----------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 70 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGDQVV--VADRNVER-----------ARERADSLGPDHHALAMDVSDEAQIREGF 70 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCCEEE--EEeCCHHH-----------HHHHHHHhCCceeEEEeccCCHHHHHHHH
Q ss_pred HHHHHc--CCCEEEEeCCCC--------CHHHHHHHHHHhcccchhcchhhhhhhccC
Q 030169 134 MEAMEA--ELDLVVCITEGI--------PQHDMVINFTRVNILLVAFLNFIMKLTRNW 181 (182)
Q Consensus 134 ~eAie~--GIk~VV~iTeG~--------~~eD~~~l~~~ak~ipv~~~~~~~~~~~~~ 181 (182)
++..+. ++..+|+ ..|+ .+.+.+++.+.-+..-.+..+++..+.+.+
T Consensus 71 ~~~~~~~g~iD~li~-nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~ 127 (520)
T PRK06484 71 EQLHREFGRIDVLVN-NAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLM 127 (520)
T ss_pred HHHHHHhCCCCEEEE-CCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHH
No 492
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=89.56 E-value=0.55 Score=44.23 Aligned_cols=87 Identities=13% Similarity=-0.023 Sum_probs=61.3
Q ss_pred ceEEEEccCCCCchhhhHHHHHh---CCceEEeeccCCCCC------------------------eE--ec--Ccccccc
Q 030169 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVVGGVTPKKGG------------------------TE--HL--GLPVFNS 107 (182)
Q Consensus 59 trViVvG~tGkmG~~v~k~~~~~---g~~IV~AgVdp~~~G------------------------~~--i~--GvPVy~S 107 (182)
+||.|-|| ||.|+.+.+.+.+. +++|| |--|+.... +. ++ .+.|+..
T Consensus 76 ikVgINGF-GRIGR~vlR~~~~~~~~~ievV-aINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~~ 153 (442)
T PLN02237 76 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVV-VVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVSN 153 (442)
T ss_pred EEEEEECC-ChHHHHHHHHHHHccCCCeEEE-EECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEEc
Confidence 78999999 99999999986643 58999 633221100 00 11 2444432
Q ss_pred --HHHHH-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeC
Q 030169 108 --VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 148 (182)
Q Consensus 108 --v~ea~-~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iT 148 (182)
.++.. .+.++|+++..+......+.+...+++|.+.|++ +
T Consensus 154 ~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~i-S 196 (442)
T PLN02237 154 RDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII-T 196 (442)
T ss_pred CCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEE-C
Confidence 33443 2358999999999999999999999999999887 5
No 493
>PTZ00117 malate dehydrogenase; Provisional
Probab=89.54 E-value=2.5 Score=37.48 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=55.4
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC-CceEEeeccCCCC---CeEe--------c----CccccccHHHHHhccCCcEE
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG-TKMVVGGVTPKKG---GTEH--------L----GLPVFNSVAEAKAETKANAS 120 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g-~~IV~AgVdp~~~---G~~i--------~----GvPVy~Sv~ea~~~~~~Dva 120 (182)
+..||.|+|+ |.+|..++..+...| .+|+ -+|.... |... . .+....+.+ +.+ ++|++
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~--L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~--~ADiV 77 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVV--LYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIK--DSDVV 77 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEE--EEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhC--CCCEE
Confidence 4579999998 999999988877777 5655 6665431 1110 1 122234455 345 68888
Q ss_pred EEee--Ch--------------HHHHHHHHHHHHcCCCEEEEeCCC
Q 030169 121 VIYV--PP--------------PFAAAAIMEAMEAELDLVVCITEG 150 (182)
Q Consensus 121 VdfV--pp--------------~av~~a~~eAie~GIk~VV~iTeG 150 (182)
|+.. |. ....+.++..-+...+.++++.++
T Consensus 78 Vitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 78 VITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 8887 22 446677777777776764444443
No 494
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=89.53 E-value=0.63 Score=44.26 Aligned_cols=89 Identities=17% Similarity=0.155 Sum_probs=60.4
Q ss_pred cCCceEEEEccCCCCchhhhHHHHHh-----CCceEEeeccCCCCCeE-------------------------------e
Q 030169 56 DKNTRVICQGITGKNGTFHTEQAIEY-----GTKMVVGGVTPKKGGTE-------------------------------H 99 (182)
Q Consensus 56 ~~~trViVvG~tGkmG~~v~k~~~~~-----g~~IV~AgVdp~~~G~~-------------------------------i 99 (182)
....||.|.|| ||.|+.+.+.+.+. +++|| |-++.+....+ +
T Consensus 125 ~~~~~V~InGF-GRIGR~v~R~~~~~~~~~~~l~lv-AIn~~~nd~~d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~lii 202 (477)
T PRK08289 125 IEPRDVVLYGF-GRIGRLLARLLIEKTGGGNGLRLR-AIVVRKGSEGDLEKRASLLRRDSVHGPFNGTITVDEENNAIIA 202 (477)
T ss_pred CCCceEEEECC-CHHHHHHHHHHHhccCCCCCeEEE-EEecCCCCCCCHHHHHHHhhhhcCCCCCCCceEeecCCCEEEE
Confidence 34679999999 99999999987754 58899 66432111101 0
Q ss_pred cC--cccccc--HHHHH-hccCCc--EEEEeeChHHHHHHHHHHHH-cCCCEEEE
Q 030169 100 LG--LPVFNS--VAEAK-AETKAN--ASVIYVPPPFAAAAIMEAME-AELDLVVC 146 (182)
Q Consensus 100 ~G--vPVy~S--v~ea~-~~~~~D--vaVdfVpp~av~~a~~eAie-~GIk~VV~ 146 (182)
+| ++++.. +++++ .+.++| ++|+.+..-.-.+-+..=++ +|.+.|++
T Consensus 203 ng~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkVii 257 (477)
T PRK08289 203 NGNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLL 257 (477)
T ss_pred CCEEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEE
Confidence 11 333332 55554 345789 99999888777777777777 79888886
No 495
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=89.51 E-value=0.92 Score=36.58 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=28.6
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCC
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPK 93 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~ 93 (182)
+..+++|.|++|.+|+.+++.+.+.|.+++ .+++.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~--l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVV--LVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEE--EEcCC
Confidence 347899999999999999999998887777 44443
No 496
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.46 E-value=1.3 Score=38.71 Aligned_cols=87 Identities=17% Similarity=0.193 Sum_probs=61.3
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhC----CceEEeeccCCCCCeE---ecCcccccc-HHHHHhcc---CCcEEEEeeC
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYG----TKMVVGGVTPKKGGTE---HLGLPVFNS-VAEAKAET---KANASVIYVP 125 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g----~~IV~AgVdp~~~G~~---i~GvPVy~S-v~ea~~~~---~~DvaVdfVp 125 (182)
...||+|+|- |+.|+-+.-.++..| .... -|+||+.+|-. -.|+|--+- ++.++... ++|.+.+.+.
T Consensus 3 sk~kvaiigs-gni~tdlm~k~lr~g~~le~~~m-vgidp~sdglaraarlgv~tt~egv~~ll~~p~~~di~lvfdats 80 (310)
T COG4569 3 SKRKVAIIGS-GNIGTDLMIKILRHGQHLEMAVM-VGIDPQSDGLARAARLGVATTHEGVIGLLNMPEFADIDLVFDATS 80 (310)
T ss_pred CcceEEEEcc-CcccHHHHHHHHhcCCcccceeE-EccCCCccHHHHHHhcCCcchhhHHHHHHhCCCCCCcceEEeccc
Confidence 4578999996 999998855555444 3333 39999987721 136765554 55554432 4568888888
Q ss_pred hHHHHHHHHHHHHcCCCEEE
Q 030169 126 PPFAAAAIMEAMEAELDLVV 145 (182)
Q Consensus 126 p~av~~a~~eAie~GIk~VV 145 (182)
+.+..+++-...|.||+.|=
T Consensus 81 a~~h~~~a~~~ae~gi~~id 100 (310)
T COG4569 81 AGAHVKNAAALAEAGIRLID 100 (310)
T ss_pred cchhhcchHhHHhcCCceee
Confidence 88888888888999999873
No 497
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=89.46 E-value=0.72 Score=39.66 Aligned_cols=84 Identities=12% Similarity=0.075 Sum_probs=53.5
Q ss_pred CCceEEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeE-ecCccccccHHHHHhccCCcEEEEeeChHHHHHHHHH
Q 030169 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTE-HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 135 (182)
Q Consensus 57 ~~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~-i~GvPVy~Sv~ea~~~~~~DvaVdfVpp~av~~a~~e 135 (182)
+..+|+|+|+ |-.|...++.++.+|.+.+ ..++......+ .....+++.-++ ....+|++++.+......+.+.+
T Consensus 144 ~~~~vlV~G~-G~vG~~a~q~ak~~G~~~v-~~~~~~~~rl~~a~~~~~i~~~~~--~~~g~Dvvid~~G~~~~~~~~~~ 219 (308)
T TIGR01202 144 KVLPDLIVGH-GTLGRLLARLTKAAGGSPP-AVWETNPRRRDGATGYEVLDPEKD--PRRDYRAIYDASGDPSLIDTLVR 219 (308)
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHcCCceE-EEeCCCHHHHHhhhhccccChhhc--cCCCCCEEEECCCCHHHHHHHHH
Confidence 3456999996 9999999999999998865 45554321111 112233433222 22368999999998766566666
Q ss_pred HHHcCCCEE
Q 030169 136 AMEAELDLV 144 (182)
Q Consensus 136 Aie~GIk~V 144 (182)
++..+=+.+
T Consensus 220 ~l~~~G~iv 228 (308)
T TIGR01202 220 RLAKGGEIV 228 (308)
T ss_pred hhhcCcEEE
Confidence 666654444
No 498
>PLN02686 cinnamoyl-CoA reductase
Probab=89.44 E-value=2.1 Score=38.11 Aligned_cols=32 Identities=16% Similarity=0.048 Sum_probs=28.2
Q ss_pred CceEEEEccCCCCchhhhHHHHHhCCceEEeec
Q 030169 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVVGGV 90 (182)
Q Consensus 58 ~trViVvG~tGkmG~~v~k~~~~~g~~IV~AgV 90 (182)
.++|+|.|++|-.|+.+++.+.+.|.+|+ +.+
T Consensus 53 ~k~VLVTGatGfIG~~lv~~L~~~G~~V~-~~~ 84 (367)
T PLN02686 53 ARLVCVTGGVSFLGLAIVDRLLRHGYSVR-IAV 84 (367)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEE-EEe
Confidence 46799999999999999999999998887 544
No 499
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=89.44 E-value=0.73 Score=41.64 Aligned_cols=82 Identities=12% Similarity=0.177 Sum_probs=60.0
Q ss_pred EEEEccCCCCchhhhHHHHHhCCceEEeeccCCCCCeEecCccccccHHHHHhccCC---cEEEEeeChHHHHHHHHHHH
Q 030169 61 VICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA---NASVIYVPPPFAAAAIMEAM 137 (182)
Q Consensus 61 ViVvG~tGkmG~~v~k~~~~~g~~IV~AgVdp~~~G~~i~GvPVy~Sv~ea~~~~~~---DvaVdfVpp~av~~a~~eAi 137 (182)
.+|.|+|+..|+..++++.+.|+++| -+....+- .. ..-+|+.+++++ =+++||..++.+++.+++-+
T Consensus 52 AVVTGaTDGIGKayA~eLAkrG~nvv--LIsRt~~K--L~-----~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l 122 (312)
T KOG1014|consen 52 AVVTGATDGIGKAYARELAKRGFNVV--LISRTQEK--LE-----AVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKL 122 (312)
T ss_pred EEEECCCCcchHHHHHHHHHcCCEEE--EEeCCHHH--HH-----HHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHh
Confidence 67889999999999999999999988 77776622 21 223444444443 36789999999999998888
Q ss_pred Hc-CCCEEEEeCCCCC
Q 030169 138 EA-ELDLVVCITEGIP 152 (182)
Q Consensus 138 e~-GIk~VV~iTeG~~ 152 (182)
+. .|-..|+ --|..
T Consensus 123 ~~~~VgILVN-NvG~~ 137 (312)
T KOG1014|consen 123 AGLDVGILVN-NVGMS 137 (312)
T ss_pred cCCceEEEEe-ccccc
Confidence 76 4666665 44433
No 500
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=89.37 E-value=1.6 Score=32.07 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=50.7
Q ss_pred hCCceEEeeccCCCCCeEecCcccccc-HHHHHhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHH
Q 030169 81 YGTKMVVGGVTPKKGGTEHLGLPVFNS-VAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVIN 159 (182)
Q Consensus 81 ~g~~IV~AgVdp~~~G~~i~GvPVy~S-v~ea~~~~~~DvaVdfVpp~av~~a~~eAie~GIk~VV~iTeG~~~eD~~~l 159 (182)
-+.+++ .|-+... ..+..+-|... ++++.+..+.+.+++..--. .|+...|++++++.++. |.|.++++...=
T Consensus 6 L~~~~l-~g~~~~~--~~~~~v~v~a~~~~~~~~~~~~~~lvIt~gdR--~di~~~a~~~~i~~iIl-tg~~~~~~~v~~ 79 (105)
T PF07085_consen 6 LDGEVL-NGGEELD--RRVGKVVVGAMSLSDFLEYLKPGDLVITPGDR--EDIQLAAIEAGIACIIL-TGGLEPSEEVLE 79 (105)
T ss_dssp TT-EEE-E--TTS----EESEEEE-SS-HHHHHHCHHTTEEEEEETT---HHHHHHHCCTTECEEEE-ETT----HHHHH
T ss_pred cCCEEE-ECCcccc--eEEeeEEEEECCHHHHHhhcCCCeEEEEeCCc--HHHHHHHHHhCCCEEEE-eCCCCCCHHHHH
Confidence 456777 6655444 23666777777 77777765667766664333 78889999999999998 887777665444
Q ss_pred HHHhcccchhcchh
Q 030169 160 FTRVNILLVAFLNF 173 (182)
Q Consensus 160 ~~~ak~ipv~~~~~ 173 (182)
..-.+.+||=+.++
T Consensus 80 la~~~~i~vi~t~~ 93 (105)
T PF07085_consen 80 LAKELGIPVISTPY 93 (105)
T ss_dssp HHHHHT-EEEE-SS
T ss_pred HHHHCCCEEEEECC
Confidence 44444588766554
Done!