RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 030169
         (182 letters)



>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain,
           N-terminal (CoA-binding) domain {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 130

 Score =  157 bits (398), Expect = 1e-50
 Identities = 81/113 (71%), Positives = 93/113 (82%), Gaps = 1/113 (0%)

Query: 45  SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPV 104
           S  AS   ++VDKNT+VICQG TGK GTFH++QA+EYGT +V GG TP KGG  HLGLPV
Sbjct: 2   SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLV-GGTTPGKGGKTHLGLPV 60

Query: 105 FNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
           FN+V EAK +T A ASVIYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMV
Sbjct: 61  FNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMV 113


>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain,
           N-terminal (CoA-binding) domain {Thermus thermophilus
           [TaxId: 274]}
          Length = 121

 Score =  156 bits (395), Expect = 3e-50
 Identities = 58/105 (55%), Positives = 77/105 (73%), Gaps = 1/105 (0%)

Query: 53  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAK 112
           + V++ TRV+ QGITG+ G FHT+Q + YGTK+V  GVTP KGG E LG+PV+++V EA 
Sbjct: 2   ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIV-AGVTPGKGGMEVLGVPVYDTVKEAV 60

Query: 113 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
           A  + +AS+I+VP P AA A +EA  A + L+V ITEGIP  DMV
Sbjct: 61  AHHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMV 105


>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain,
           N-terminal (CoA-binding) domain {Escherichia coli
           [TaxId: 562]}
          Length = 119

 Score =  154 bits (392), Expect = 8e-50
 Identities = 70/105 (66%), Positives = 83/105 (79%), Gaps = 1/105 (0%)

Query: 53  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVVGGVTPKKGGTEHLGLPVFNSVAEAK 112
           + +DKNT+VICQG TG  GTFH+EQAI YGTKMV GGVTP KGGT HLGLPVFN+V EA 
Sbjct: 1   ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMV-GGVTPGKGGTTHLGLPVFNTVREAV 59

Query: 113 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 157
           A T A ASVIYVP PF   +I+EA++A + L++ ITEGIP  DM+
Sbjct: 60  AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 104


>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 338

 Score = 27.1 bits (60), Expect = 1.1
 Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 15/80 (18%)

Query: 79  IEYGTKMVVGGVTPKKGGTE--------HLGLPVFNSVAEAKAETKANASVIYVPPPFAA 130
           + +        V  +  G             +PV +SV +AK    A   +I V  P   
Sbjct: 33  LRHSRLFKPVCVVAEHEGKMASDFVKPVRYDVPVVSSVEKAKEM-GAEVLIIGVSNPGGY 91

Query: 131 ------AAIMEAMEAELDLV 144
                   + +A+   +D++
Sbjct: 92  LEEQIATLVKKALSLGMDVI 111


>d1dpta_ d.80.1.3 (A:) D-dopachrome tautomerase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 117

 Score = 24.4 bits (53), Expect = 5.4
 Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 8/41 (19%)

Query: 130 AAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF 170
           +A   E +  EL         + Q  ++I F  +    +  
Sbjct: 77  SAHFFEFLTKEL--------ALGQDRILIRFFPLESWQIGK 109


>d1uiza_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF)
           {African clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 115

 Score = 24.0 bits (52), Expect = 7.0
 Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 8/41 (19%)

Query: 130 AAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF 170
              + + +  +L         IP + + IN+  +N   V +
Sbjct: 77  TKLLCDILTKQL--------NIPANRVYINYYDLNAANVGW 109


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.130    0.372 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 630,300
Number of extensions: 25820
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 10
Length of query: 182
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,309,196
Effective search space: 133537992
Effective search space used: 133537992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)